Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus]. 483 e-144
Alignment gi|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus]. 362 e-100
Alignment gi|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [B... 318 5e-87
Alignment gi|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos ... 316 3e-86
Alignment gi|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus]. 111 1e-24
Alignment gi|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus]. 63 5e-10
>ref|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus].
Length = 305
Score = 483 bits (1244), Expect(2) = e-144
Identities = 233/252 (92%), Positives = 241/252 (95%)
Frame = +1
Query: 175 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 354
RRSRRP VTLLDPNEKY LRLLDKTTVNHNTK+FRFALPTAHHVLGLPVGKHVYLSARID
Sbjct: 31 RRSRRPPVTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLGLPVGKHVYLSARID 90
Query: 355 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 534
GSLVIRPYTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GDVVEFRGPS
Sbjct: 91 GSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPS 150
Query: 535 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 714
GLLTY GKGKF+IQPNKK+PPE RVAR LGMIAGGTGITPMLQLIRAILKDPEDPTQCFL
Sbjct: 151 GLLTYAGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 210
Query: 715 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 894
LFANQTEKDIILREDLEELQARHP +FKLWFTLD PPE W YSKGFVS DMIREHLPAP
Sbjct: 211 LFANQTEKDIILREDLEELQARHPGRFKLWFTLDHPPEGWAYSKGFVSVDMIREHLPAPG 270
Query: 895 KDVLLLLCGPPP 930
+DVLLLLCGPPP
Sbjct: 271 EDVLLLLCGPPP 282
Score = 48.1 bits (113), Expect(2) = e-144
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP LDKLGYS KMRFT
Sbjct: 282 PMVQLACHPSLDKLGYSPKMRFT 304
>ref|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus].
Length = 301
Score = 362 bits (930), Expect = e-100
Identities = 163/247 (65%), Positives = 210/247 (85%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL +P+ KY LRL+DK ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LVI
Sbjct: 32 PAITLENPDIKYPLRLIDKEVISHDTRRFRFALPSPEHILGLPVGQHIYLSARIDGNLVI 91
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y
Sbjct: 92 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 151
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 152 QGKGKFAIRPDKKSDPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 211
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P ++ L+
Sbjct: 212 TEKDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLV 271
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 272 LMCGPPP 278
>ref|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 478
Score = 318 bits (815), Expect = 5e-87
Identities = 143/245 (58%), Positives = 186/245 (75%)
Frame = +1
Query: 196 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 375
+TL + + KY L L++K ++HNT++FRF LP+ H LGLPVG +V+L A IDG LV+R
Sbjct: 211 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDGVLVVRA 270
Query: 376 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 555
YTP++SD+D G+VDL+IK+Y K VHP +PEGGKM+QYL ++K+GD + F+GPSG L Y G
Sbjct: 271 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 330
Query: 556 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 735
GKF +P K S PE ++ LGMIAGGTGITPMLQLIR I + P D T L+FANQTE
Sbjct: 331 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 390
Query: 736 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLLLL 915
+DI++R +LEE+ HP QF LW+TLD+PP DW YS GF++ DMI+EHLP P K L+L+
Sbjct: 391 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 450
Query: 916 CGPPP 930
CGP P
Sbjct: 451 CGPLP 455
>ref|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 479
Score = 316 bits (809), Expect = 3e-86
Identities = 142/245 (57%), Positives = 185/245 (75%)
Frame = +1
Query: 196 VTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRP 375
+TL + + KY L L++K ++HNT++FRF LP+ H LGLPVG +V+L A ID LV+R
Sbjct: 212 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDSVLVVRA 271
Query: 376 YTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTG 555
YTP++SD+D G+VDL+IK+Y K VHP +PEGGKM+QYL ++K+GD + F+GPSG L Y G
Sbjct: 272 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 331
Query: 556 KGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTE 735
GKF +P K S PE ++ LGMIAGGTGITPMLQLIR I + P D T L+FANQTE
Sbjct: 332 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 391
Query: 736 KDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLLLL 915
+DI++R +LEE+ HP QF LW+TLD+PP DW YS GF++ DMI+EHLP P K L+L+
Sbjct: 392 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 451
Query: 916 CGPPP 930
CGP P
Sbjct: 452 CGPLP 456
>ref|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus].
Length = 520
Score = 111 bits (277), Expect = 1e-24
Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 4/238 (1%)
Frame = +1
Query: 232 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDEDQGY 411
+L+ K V H+TK F LP + H L +PVG+HVYL I G+ +++PYTP+ +
Sbjct: 278 QLVSKEDVTHDTKLFCLMLPPSTH-LEVPVGQHVYLRLPITGTEIVKPYTPVCDSLFSEF 336
Query: 412 VDLVI--KVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNK 585
+ V+ +Y+ + +P G + L+ L++GD V P +G F I +
Sbjct: 337 KEPVLPNNIYIYFLIKIYP-AGFFTPELDQLQIGDYVSVSNP--------EGNFIISQLQ 387
Query: 586 KSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLE 765
+ L ++A GTG TPM++++ L + + L+F N+TE DII R LE
Sbjct: 388 E-------LEDLFLLAAGTGFTPMVKVLNYALTNIPSLRKVKLMFFNKTEDDIIWRSQLE 440
Query: 766 ELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLP--APAKDVLLLLCGPPPW 933
+L A +F++ F L P +W+ +G++S ++ E L + VL+ LCGP P+
Sbjct: 441 KL-AFKDKRFEVEFVLSAPTSEWSGKQGYISPALLSEFLKRRSDTSKVLICLCGPTPF 497
>ref|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus].
Length = 195
Score = 62.8 bits (151), Expect = 5e-10
Identities = 45/133 (33%), Positives = 67/133 (50%)
Frame = +1
Query: 223 YLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDED 402
+L+ +D+ T +T RFALP + LGL G+H+ L +D + R YTPI+
Sbjct: 78 FLISAVDRLT--EDTYLVRFALP-GNSQLGLRPGQHLILRGTVDDLEIQRAYTPISPANA 134
Query: 403 QGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPN 582
+GY +++IK Y + G MS+Y+ S K GD +RGP G F +PN
Sbjct: 135 EGYFEVLIKCY---------QTGLMSRYVKSWKAGDTAFWRGPF--------GGFFYKPN 177
Query: 583 KKSPPEPRVARKL 621
+ P R+ R L
Sbjct: 178 QFHGPFTRLWRPL 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,814,421
Number of extensions: 1324123
Number of successful extensions: 5040
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5025
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoredu... 477 e-143
Alignment gi|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus ... 366 e-101
Alignment gi|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b... 326 3e-93
Alignment gi|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polyp... 177 2e-53
Alignment gi|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxido... 109 4e-24
Alignment gi|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b... 92 1e-18
>ref|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoreductase type 3,
polypeptide A2 isoform 1 [Canis familiaris].
Length = 305
Score = 477 bits (1227), Expect(2) = e-143
Identities = 227/252 (90%), Positives = 244/252 (96%)
Frame = +1
Query: 175 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 354
RRSRRP VTLLDP+EKYLLRLLD+TTV+HNTK+FRFALP+AHHVLGLPVGKHVYLSARID
Sbjct: 31 RRSRRPKVTLLDPDEKYLLRLLDRTTVSHNTKRFRFALPSAHHVLGLPVGKHVYLSARID 90
Query: 355 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 534
GSLVIRPYTP+TSDED GYVDLVIKVY+KGVHPKFP+GGKMSQYLNSLK+GDVVEFRGPS
Sbjct: 91 GSLVIRPYTPVTSDEDLGYVDLVIKVYMKGVHPKFPDGGKMSQYLNSLKIGDVVEFRGPS 150
Query: 535 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 714
GLLTYTG+G F+IQPNKKSPPEP+VA+KLGMIAGGTGITPMLQLI+AILKDPEDPTQC L
Sbjct: 151 GLLTYTGRGNFNIQPNKKSPPEPQVAKKLGMIAGGTGITPMLQLIQAILKDPEDPTQCSL 210
Query: 715 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 894
LFANQTEKDIILREDLEELQAR+PN+FKLWFTLD PPEDW YSKGFV+ADMIREHLPAP
Sbjct: 211 LFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPEDWAYSKGFVTADMIREHLPAPG 270
Query: 895 KDVLLLLCGPPP 930
DVLLLLCGPPP
Sbjct: 271 DDVLLLLCGPPP 282
Score = 51.2 bits (121), Expect(2) = e-143
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP+LDKLGYSQKMRFT
Sbjct: 282 PMVQLACHPNLDKLGYSQKMRFT 304
>ref|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus familiaris].
Length = 301
Score = 366 bits (940), Expect = e-101
Identities = 165/247 (66%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+DK +NH+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LVI
Sbjct: 32 PAITLESPDIKYPLRLIDKEVINHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVI 91
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y
Sbjct: 92 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 151
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP DPT C LLFANQ
Sbjct: 152 QGKGKFAIRPDKKSNPIIKTVKSVGMIAGGTGITPMLQVIRAIIKDPHDPTVCHLLFANQ 211
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P ++ L+
Sbjct: 212 TEKDILLRPELEELRNEHSARFKLWYTVDKAPEAWDYSQGFVNEEMIRDHLPPPEEEPLI 271
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 272 LMCGPPP 278
>ref|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1 [Canis
familiaris].
Length = 636
Score = 326 bits (836), Expect(2) = 3e-93
Identities = 147/250 (58%), Positives = 196/250 (78%)
Frame = +1
Query: 181 SRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGS 360
SRR +TL D KYLL L++K ++HNT +FRF LP++ HVLGLP+G +V+L A+IDG
Sbjct: 364 SRRKQITLQDSEAKYLLPLIEKEQISHNTWRFRFGLPSSDHVLGLPIGNYVHLLAKIDGV 423
Query: 361 LVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGL 540
+V+R YTP++SD+D+G+VDL+IKVY K VHP +PEGGKM+QYL ++K+GD + FRGP+G
Sbjct: 424 MVVRAYTPVSSDDDRGFVDLIIKVYFKNVHPNYPEGGKMTQYLENMKIGDTILFRGPTGR 483
Query: 541 LTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLF 720
L Y G G FSI+P K S PE ++ LGMIAGGTGITPMLQLIR I K+P D T+ L+F
Sbjct: 484 LFYNGPGNFSIKPYKTSEPEKKLVSHLGMIAGGTGITPMLQLIRHITKNPNDRTRMSLIF 543
Query: 721 ANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKD 900
ANQTE+DI++R +LEE+ HP+QF LW+TLD+PP W YS G+++A+MI+EHLP P +
Sbjct: 544 ANQTEEDILVRRELEEVARTHPDQFDLWYTLDRPPVGWKYSSGYITANMIKEHLPPPGQS 603
Query: 901 VLLLLCGPPP 930
L+L+CGP P
Sbjct: 604 TLILVCGPMP 613
Score = 35.4 bits (80), Expect(2) = 3e-93
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
P++Q A HP+L+KLGY+++M FT
Sbjct: 613 PLIQTAAHPNLEKLGYTKEMIFT 635
>ref|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polypeptide A2 [Canis lupus
familiaris].
Length = 115
Score = 177 bits (450), Expect(2) = 2e-53
Identities = 83/92 (90%), Positives = 87/92 (94%)
Frame = +1
Query: 655 MLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDW 834
MLQLI+AILKDPEDPTQC LLFANQTEKDIILREDLEELQAR+PN+FKLWFTLD PPEDW
Sbjct: 1 MLQLIQAILKDPEDPTQCSLLFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPEDW 60
Query: 835 TYSKGFVSADMIREHLPAPAKDVLLLLCGPPP 930
YSKGFV+ADMIREHLPAP DVLLLLCGPPP
Sbjct: 61 AYSKGFVTADMIREHLPAPGDDVLLLLCGPPP 92
Score = 51.2 bits (121), Expect(2) = 2e-53
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP+LDKLGYSQKMRFT
Sbjct: 92 PMVQLACHPNLDKLGYSQKMRFT 114
>ref|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxidoreductase [Canis
familiaris].
Length = 485
Score = 109 bits (273), Expect = 4e-24
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 11/245 (4%)
Frame = +1
Query: 232 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDE---- 399
+L+ K V H+TK F LP + H L +P+G+HVYL I G+ +++PYTP++
Sbjct: 244 QLISKECVTHDTKLFCLMLPPSTH-LQVPIGQHVYLKLTITGTEIVKPYTPVSDFLLSEL 302
Query: 400 -----DQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 564
+ Y+ +IK+Y G+ PE L+ L++GD V P +G
Sbjct: 303 KEPVLNNKYIYFLIKIYAAGLFT--PE-------LDHLQIGDFVSVSNP--------EGN 345
Query: 565 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 744
F I ++ L ++A GTG TPM++++ L + + L+F N+TE DI
Sbjct: 346 FKISQFQE-------LEDLFLLAAGTGFTPMVKILNYALTNIPSLRKVKLMFFNKTEDDI 398
Query: 745 ILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHL--PAPAKDVLLLLC 918
I R LE+L A +F++ F L P +W +G +S ++ E L VL+ +C
Sbjct: 399 IWRSQLEKL-AFKDKRFQVEFVLSAPTSEWNGKQGHISPGLLSEFLKRSLDRSKVLICIC 457
Query: 919 GPPPW 933
GP P+
Sbjct: 458 GPTPF 462
>ref|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1
[Canis familiaris].
Length = 314
Score = 91.7 bits (226), Expect = 1e-18
Identities = 74/247 (29%), Positives = 120/247 (48%), Gaps = 8/247 (3%)
Frame = +1
Query: 205 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 384
L P R+ + +T + RFA+P + LGL G+H+ L ++D + R YTP
Sbjct: 71 LSPETFLAFRISAMDRLTEDTYRVRFAVPR-NSQLGLRPGQHLILRGKVDDLEIQRAYTP 129
Query: 385 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 564
I+ +GY +++IK Y E G MS+Y+ S GD +RGP G
Sbjct: 130 ISPANAEGYFEVLIKCY---------ETGLMSRYVKSWSTGDTTFWRGPF--------GD 172
Query: 565 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 744
F +PN+ +L M+A GTG+ PM+ ++++I + ED T L+ +T + I
Sbjct: 173 FFYKPNQHG--------ELLMLASGTGLAPMVPVLQSITDNAEDETFVTLVGCFKTFEGI 224
Query: 745 ILREDLEELQARHPNQFKLWFTLDQPPE----DWTYSK----GFVSADMIREHLPAPAKD 900
L+ L+E QAR N + +F L Q W+Y + G ++ D+I E + + +
Sbjct: 225 YLKTFLQE-QARFWN-VRTFFVLSQENSLEKLPWSYREKTRFGRLAQDLIEELVSSCRRK 282
Query: 901 VLLLLCG 921
L+CG
Sbjct: 283 PFALVCG 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,653,162
Number of extensions: 1357848
Number of successful extensions: 5106
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5084
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens]. 481 e-144
Alignment gi|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 361 e-100
Alignment gi|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Ho... 361 e-100
Alignment gi|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo ... 361 e-100
Alignment gi|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo ... 361 e-100
Alignment gi|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 361 e-100
Alignment gi|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens]. 328 5e-90
Alignment gi|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens]. 105 6e-23
Alignment gi|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapi... 89 5e-18
>ref|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens].
Length = 305
Score = 481 bits (1238), Expect(2) = e-144
Identities = 230/252 (91%), Positives = 243/252 (96%)
Frame = +1
Query: 175 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 354
RRSRRP VTLLDPNEKYLLRLLDKTTV+HNTK+FRFALPTAHH LGLPVGKH+YLS RID
Sbjct: 31 RRSRRPQVTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHTLGLPVGKHIYLSTRID 90
Query: 355 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 534
GSLVIRPYTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GDVVEFRGPS
Sbjct: 91 GSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPS 150
Query: 535 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 714
GLLTYTGKG F+IQPNKKSPPEPRVA+KLGMIAGGTGITPMLQLIRAILK PEDPTQCFL
Sbjct: 151 GLLTYTGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFL 210
Query: 715 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 894
LFANQTEKDIILREDLEELQAR+PN+FKLWFTLD PP+DW YSKGFV+ADMIREHLPAP
Sbjct: 211 LFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPKDWAYSKGFVTADMIREHLPAPG 270
Query: 895 KDVLLLLCGPPP 930
DVL+LLCGPPP
Sbjct: 271 DDVLVLLCGPPP 282
Score = 51.2 bits (121), Expect(2) = e-144
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP+LDKLGYSQKMRFT
Sbjct: 282 PMVQLACHPNLDKLGYSQKMRFT 304
>ref|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 361 bits (926), Expect = e-100
Identities = 163/247 (65%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+
Sbjct: 9 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 68
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y
Sbjct: 69 RPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 128
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 129 QGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 188
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P ++ L+
Sbjct: 189 TEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLV 248
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 249 LMCGPPP 255
>ref|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Homo sapiens].
Length = 334
Score = 361 bits (926), Expect = e-100
Identities = 163/247 (65%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+
Sbjct: 65 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 124
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y
Sbjct: 125 RPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 184
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 185 QGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 244
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P ++ L+
Sbjct: 245 TEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLV 304
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 305 LMCGPPP 311
>ref|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo sapiens].
Length = 301
Score = 361 bits (926), Expect = e-100
Identities = 163/247 (65%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+
Sbjct: 32 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 91
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y
Sbjct: 92 RPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 151
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 152 QGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 211
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P ++ L+
Sbjct: 212 TEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLV 271
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 272 LMCGPPP 278
>ref|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 361 bits (926), Expect = e-100
Identities = 163/247 (65%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+
Sbjct: 9 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 68
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y
Sbjct: 69 RPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 128
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 129 QGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 188
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P ++ L+
Sbjct: 189 TEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLV 248
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 249 LMCGPPP 255
>ref|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 361 bits (926), Expect = e-100
Identities = 163/247 (65%), Positives = 209/247 (84%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL P+ KY LRL+D+ ++H+T++FRFALP+ H+LGLPVG+H+YLSARIDG+LV+
Sbjct: 9 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 68
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTPI+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+++GD +EFRGPSGLL Y
Sbjct: 69 RPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY 128
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P R + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 129 QGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 188
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ +H +FKLW+TLD+ PE W Y +GFV+ +MIR+HLP P ++ L+
Sbjct: 189 TEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLV 248
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 249 LMCGPPP 255
>ref|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens].
Length = 276
Score = 328 bits (841), Expect = 5e-90
Identities = 149/249 (59%), Positives = 195/249 (78%)
Frame = +1
Query: 184 RRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSL 363
RR +TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V L A+ID L
Sbjct: 5 RREPITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHVLGLPVGNYVQLLAKIDNEL 64
Query: 364 VIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLL 543
V+R YTP++SD+D+G+VDL+IK+Y K VHP++PEGGKM+QYL ++K+G+ + FRGP G L
Sbjct: 65 VVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGRL 124
Query: 544 TYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFA 723
Y G G I+P++ S P+ +A LGMIAGGTGITPMLQLIR I KDP D T+ L+FA
Sbjct: 125 FYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIFA 184
Query: 724 NQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDV 903
NQTE+DI++R++LEE+ HP+QF LW+TLD+PP W YS GFV+ADMI+EHLP PAK
Sbjct: 185 NQTEEDILVRKELEEIARTHPDQFNLWYTLDRPPIGWKYSSGFVTADMIKEHLPPPAKST 244
Query: 904 LLLLCGPPP 930
L+L+CGPPP
Sbjct: 245 LILVCGPPP 253
>ref|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens].
Length = 521
Score = 105 bits (263), Expect = 6e-23
Identities = 75/246 (30%), Positives = 120/246 (48%), Gaps = 12/246 (4%)
Frame = +1
Query: 232 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 396
+L+ K V H+T+ F LP + H L +P+G+HVYL I G+ +++PYTP++
Sbjct: 279 QLISKEDVTHDTRLFCLMLPPSTH-LQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEF 337
Query: 397 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 561
+ Y+ +IK+Y G+ PE L+ L++GD V P +G
Sbjct: 338 KEPVLPNNKYIYFLIKIYPTGLFT--PE-------LDRLQIGDFVSVSSP--------EG 380
Query: 562 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 741
F I ++ L ++A GTG TPM++++ L D + L+F N+TE D
Sbjct: 381 NFKISKFQE-------LEDLFLLAAGTGFTPMVKILNYALTDIPSLRKVKLMFFNKTEDD 433
Query: 742 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLP--APAKDVLLLL 915
II R LE+L A + + F L P +W +G +S ++ E L VL+ +
Sbjct: 434 IIWRSQLEKL-AFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLKRNLDKSKVLVCI 492
Query: 916 CGPPPW 933
CGP P+
Sbjct: 493 CGPVPF 498
>ref|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapiens].
Length = 315
Score = 89.4 bits (220), Expect = 5e-18
Identities = 71/247 (28%), Positives = 120/247 (48%), Gaps = 8/247 (3%)
Frame = +1
Query: 205 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 384
L+P ++ + +T + RFALP + LGL G+H+ L +D + R YTP
Sbjct: 72 LNPETFVAFCIIAMDRLTKDTYRVRFALP-GNSQLGLRPGQHLILRGIVDDLEIQRAYTP 130
Query: 385 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 564
I+ +GY +++IK Y G+ MS+Y+ S ++GD +RGP G
Sbjct: 131 ISPANAEGYFEVLIKCYQMGL---------MSRYVESWRVGDTAFWRGPF--------GD 173
Query: 565 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 744
F +PN+ +L ++A GTG+ PM+ ++++I + D T L+ +T + I
Sbjct: 174 FFYKPNQYG--------ELLLLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESI 225
Query: 745 ILREDLEELQARHPNQFKLWFTLDQPPED----WTYSK----GFVSADMIREHLPAPAKD 900
L+ L+E QAR N + +F L Q W+Y + G + D+I+E + +
Sbjct: 226 YLKTFLQE-QARFWN-VRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRK 283
Query: 901 VLLLLCG 921
L+CG
Sbjct: 284 PFALVCG 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,669,640
Number of extensions: 1331795
Number of successful extensions: 5017
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4993
Number of HSP's successfully gapped: 10
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus]. 474 e-142
Alignment gi|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus]. 353 2e-97
Alignment gi|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus m... 332 8e-93
Alignment gi|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mu... 321 1e-89
Alignment gi|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus]. 107 1e-23
Alignment gi|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus]. 94 2e-19
>ref|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus].
Length = 305
Score = 474 bits (1219), Expect(2) = e-142
Identities = 226/252 (89%), Positives = 245/252 (97%)
Frame = +1
Query: 175 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 354
RRSRRP VTL DP+EKYLLRLLDKTTV+HNT++FRFALPTAHH+LGLPVGKHVYLSARID
Sbjct: 31 RRSRRPQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSARID 90
Query: 355 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 534
GSLVIRPYTP+TSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYL+SLK+GD+VEFRGPS
Sbjct: 91 GSLVIRPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPS 150
Query: 535 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 714
GLL+Y GKG F+IQPNKKSPPE RVA+KLGMIAGGTGITPMLQLIRAILK PEDPTQCFL
Sbjct: 151 GLLSYAGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFL 210
Query: 715 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 894
LFANQTE+DIILREDLEELQA++PN+FKLWFTLD PPEDWTYSKGFV+ADMI+EHLPAPA
Sbjct: 211 LFANQTERDIILREDLEELQAQYPNRFKLWFTLDSPPEDWTYSKGFVTADMIQEHLPAPA 270
Query: 895 KDVLLLLCGPPP 930
+DVLLLLCGPPP
Sbjct: 271 EDVLLLLCGPPP 282
Score = 51.2 bits (121), Expect(2) = e-142
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP+LDKLGYSQKMRFT
Sbjct: 282 PMVQLACHPNLDKLGYSQKMRFT 304
>ref|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus].
Length = 301
Score = 353 bits (905), Expect = 2e-97
Identities = 156/247 (63%), Positives = 207/247 (83%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL +P+ KY LRL+DK ++ +T++FRFALP+ H+LGLP+G+H+YLS RIDG+LVI
Sbjct: 32 PAITLENPDIKYPLRLIDKEVISPDTRRFRFALPSPQHILGLPIGQHIYLSTRIDGNLVI 91
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTP++SD+D+G+VDLV+KVY K HPKFP GGKMSQYL ++K+GD +EFRGP+GLL Y
Sbjct: 92 RPYTPVSSDDDKGFVDLVVKVYFKDTHPKFPAGGKMSQYLENMKIGDTIEFRGPNGLLVY 151
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+ +KKS P R + +GMIAGGTGITPMLQ+IRA+LKDP D T C+LLFANQ
Sbjct: 152 QGKGKFAIRADKKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 211
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
+EKDI+LR +LEEL+ H +FKLW+T+D+ P+ W YS+GFV+ +MIR+HLP P ++ L+
Sbjct: 212 SEKDILLRPELEELRNEHSARFKLWYTVDKAPDAWDYSQGFVNEEMIRDHLPTPGEEPLI 271
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 272 LMCGPPP 278
>ref|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus musculus].
Length = 276
Score = 332 bits (850), Expect(2) = 8e-93
Identities = 152/249 (61%), Positives = 194/249 (77%)
Frame = +1
Query: 184 RRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSL 363
++ L+TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V+L A+I+ L
Sbjct: 5 KKDLITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNEL 64
Query: 364 VIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLL 543
VIR YTP++SD+DQG+VDL+IK+Y K VHPK+PEGGKM+QYL ++K+GD + FRGP+G L
Sbjct: 65 VIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRL 124
Query: 544 TYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFA 723
Y G I+ NK S PE ++ LGMIAGGTGITPMLQLIR I KD D T+ LLFA
Sbjct: 125 FYNEPGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFA 184
Query: 724 NQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDV 903
NQTE+DI+LR++LEE+ H QF LW+TLD+PP DW YS GFVSADMI+EHLP P +D
Sbjct: 185 NQTEEDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADMIKEHLPPPGEDT 244
Query: 904 LLLLCGPPP 930
L+L+CGPPP
Sbjct: 245 LILVCGPPP 253
Score = 28.1 bits (61), Expect(2) = 8e-93
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRF 992
P++Q A HP L++L Y++ M F
Sbjct: 253 PLIQAAAHPSLEQLSYTKDMIF 274
>ref|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mus musculus].
Length = 292
Score = 321 bits (823), Expect(2) = 1e-89
Identities = 152/265 (57%), Positives = 194/265 (73%), Gaps = 16/265 (6%)
Frame = +1
Query: 184 RRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSL 363
++ L+TL DP KY L L++K ++HNT++FRF LP+ HVLGLPVG +V+L A+I+ L
Sbjct: 5 KKDLITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNEL 64
Query: 364 VIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLL 543
VIR YTP++SD+DQG+VDL+IK+Y K VHPK+PEGGKM+QYL ++K+GD + FRGP+G L
Sbjct: 65 VIRAYTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRL 124
Query: 544 TYTGKG----------------KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRA 675
Y G I+ NK S PE ++ LGMIAGGTGITPMLQLIR
Sbjct: 125 FYNEPGCQTRAAEVKNIFIFLGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRH 184
Query: 676 ILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFV 855
I KD D T+ LLFANQTE+DI+LR++LEE+ H QF LW+TLD+PP DW YS GFV
Sbjct: 185 ITKDTSDETRMSLLFANQTEEDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFV 244
Query: 856 SADMIREHLPAPAKDVLLLLCGPPP 930
SADMI+EHLP P +D L+L+CGPPP
Sbjct: 245 SADMIKEHLPPPGEDTLILVCGPPP 269
Score = 28.1 bits (61), Expect(2) = 1e-89
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRF 992
P++Q A HP L++L Y++ M F
Sbjct: 269 PLIQAAAHPSLEQLSYTKDMIF 290
>ref|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus].
Length = 528
Score = 107 bits (268), Expect = 1e-23
Identities = 73/246 (29%), Positives = 120/246 (48%), Gaps = 12/246 (4%)
Frame = +1
Query: 232 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 396
+L+ K V H+T+ F LP + H L +PVG+HVYL + G+ +++PYTP++
Sbjct: 286 QLISKEDVTHDTRLFCLMLPPSTH-LQVPVGQHVYLKLSVTGAEIVKPYTPVSDSLLSDF 344
Query: 397 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 561
Y+ +IK+Y G+ PE L+ L++GD + GP +G
Sbjct: 345 KEPVLSPNKYICFLIKIYPAGLFT--PE-------LDRLQIGDFISVSGP--------EG 387
Query: 562 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 741
F + ++ L ++A GTG TPM+ ++ L + L+F N+TE D
Sbjct: 388 DFKVSKLQE-------VEDLFLLAAGTGFTPMVTVLNYALSHMSSLRKVKLMFFNKTEDD 440
Query: 742 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKD--VLLLL 915
II R LE+L R +F + F L P +W +G +S ++ E L +++ L +
Sbjct: 441 IIWRCQLEKLALRE-KRFDVEFVLSAPSPEWNGKQGHISRALLSEFLQRSSENSRAFLCI 499
Query: 916 CGPPPW 933
CGP P+
Sbjct: 500 CGPTPF 505
>ref|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus].
Length = 256
Score = 93.6 bits (231), Expect = 2e-19
Identities = 76/249 (30%), Positives = 116/249 (46%), Gaps = 8/249 (3%)
Frame = +1
Query: 205 LDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTP 384
L P + V +T RF LP + LGL G+H+ L +DG + R YTP
Sbjct: 13 LSPETFLAFHISTMEKVTKDTYLVRFTLP-GNSRLGLRPGQHLILRGVVDGLEIQRAYTP 71
Query: 385 ITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGK 564
I+ +GY D++IK Y G+ MSQY+ S + GD +RGP G Y
Sbjct: 72 ISPVTAEGYFDVLIKCYRTGL---------MSQYVESWRTGDTAFWRGPFGSFLY----- 117
Query: 565 FSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDI 744
EP+ +L M+A GTG+ PM+ ++++I D +D T L+ +T + I
Sbjct: 118 -----------EPKKYGELLMLAAGTGLAPMVPILQSITDDEDDETFVTLVGCFKTFEGI 166
Query: 745 ILREDLEELQARHPNQFKLWFTLDQ--PPED--WTYSK----GFVSADMIREHLPAPAKD 900
L+ +E QAR N + +F L Q PE W+Y G + +++ E + +
Sbjct: 167 YLKTFFQE-QARFWN-VQTFFVLSQEVSPEQLPWSYRDKTHFGRLGQELVAELVACCRRK 224
Query: 901 VLLLLCGPP 927
L+CG P
Sbjct: 225 PFTLVCGSP 233
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,512,711
Number of extensions: 1109770
Number of successful extensions: 3937
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3924
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa]. 515 e-155
Alignment gi|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-li... 365 e-101
Alignment gi|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [S... 113 2e-25
Alignment gi|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochr... 82 5e-16
Alignment gi|XP_003356510.1| PREDICTED: NADH-cytochrome b5 reductase-like... 56 4e-08
>ref|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa].
Length = 305
Score = 515 bits (1327), Expect(2) = e-155
Identities = 251/252 (99%), Positives = 252/252 (100%)
Frame = +1
Query: 175 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 354
RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID
Sbjct: 31 RRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARID 90
Query: 355 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 534
GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS
Sbjct: 91 GSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPS 150
Query: 535 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 714
GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL
Sbjct: 151 GLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFL 210
Query: 715 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 894
LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA
Sbjct: 211 LFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPA 270
Query: 895 KDVLLLLCGPPP 930
+DVLLLLCGPPP
Sbjct: 271 EDVLLLLCGPPP 282
Score = 51.2 bits (121), Expect(2) = e-155
Identities = 22/23 (95%), Positives = 23/23 (100%)
Frame = +3
Query: 927 PMVQLACHPHLDKLGYSQKMRFT 995
PMVQLACHP+LDKLGYSQKMRFT
Sbjct: 282 PMVQLACHPNLDKLGYSQKMRFT 304
>ref|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-like [Sus scrofa].
Length = 301
Score = 365 bits (937), Expect = e-101
Identities = 166/247 (67%), Positives = 210/247 (85%)
Frame = +1
Query: 190 PLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 369
P +TL +P+ KY LRL+DK VNH+T++FRFALP+ HVLGLPVG+H+YLSARIDG+LVI
Sbjct: 32 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHVLGLPVGQHIYLSARIDGNLVI 91
Query: 370 RPYTPITSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTY 549
RPYTP++SD+D+G+VDLVIKVY K HPKFP GGKMSQYL S+K+GD +EFRGP+GLL Y
Sbjct: 92 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 151
Query: 550 TGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 729
GKGKF+I+P+KKS P + + +GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 152 QGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 211
Query: 730 TEKDIILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAKDVLL 909
TEKDI+LR +LEEL+ H +FKLW+T+D+ PE W YS+GFV+ +MIR+HLP P ++ L+
Sbjct: 212 TEKDILLRPELEELRNEHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLPPPEEEPLV 271
Query: 910 LLCGPPP 930
L+CGPPP
Sbjct: 272 LMCGPPP 278
>ref|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [Sus scrofa].
Length = 281
Score = 113 bits (283), Expect = 2e-25
Identities = 77/246 (31%), Positives = 124/246 (50%), Gaps = 12/246 (4%)
Frame = +1
Query: 232 RLLDKTTVNHNTKKFRFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSD----- 396
+L+ K V H+TK F LP + H L +PVG+HVYL I G+ +++PYTP++
Sbjct: 56 QLISKEDVTHDTKLFSVMLPPSTH-LQVPVGQHVYLKLTIAGTEIVKPYTPVSDSLVPEF 114
Query: 397 -----EDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKG 561
+ Y+ ++K+Y G+ PE L+ L++GD V P +G
Sbjct: 115 KEPVFPNSKYIYFLVKIYPAGLFT--PE-------LDLLQIGDYVSVSNP--------EG 157
Query: 562 KFSIQPNKKSPPEPRVARKLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKD 741
F I ++ L ++A GTG TPM++++ L + L+F N+TE D
Sbjct: 158 SFKISQFQEM-------EDLFLLAAGTGFTPMVKVLHYALTGIPSLRKVKLMFFNKTEDD 210
Query: 742 IILREDLEELQARHPNQFKLWFTLDQPPEDWTYSKGFVSADMIREHLPAPAK--DVLLLL 915
II R LE+L A +F + F L PP +W+ +G++S ++ E L + VL+ +
Sbjct: 211 IIWRSQLEKL-ALKDKRFDVEFVLSAPPSEWSGKQGYISPALLSEFLKKSLEKSKVLICI 269
Query: 916 CGPPPW 933
CGP P+
Sbjct: 270 CGPTPF 275
>ref|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochrome b5 reductase-like
[Sus scrofa].
Length = 313
Score = 82.0 bits (201), Expect = 5e-16
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 4/192 (2%)
Frame = +1
Query: 277 RFALPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPK 456
RFALP + LGL G+H+ L +D + R YTPI+ +GY +++IK Y
Sbjct: 94 RFALP-GNSQLGLRPGQHLILRGTVDDLEIQRAYTPISPANTEGYFEVLIKCY------- 145
Query: 457 FPEGGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAG 636
+ G MSQ + S ++GD +RGP G Y +P +L M+A
Sbjct: 146 --QTGLMSQCVKSWRVGDAAFWRGPFGSFCY----------------KPNQYGELLMLAA 187
Query: 637 GTGITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLD 816
GTG+ PM+ ++++I + ED T L+ +T + I L+ L+E QAR N + +F L
Sbjct: 188 GTGLAPMVPILQSITDNAEDETFVTLVGCFKTFEGIYLKAFLQE-QARFWN-VRTFFVLS 245
Query: 817 Q--PPED--WTY 840
Q PE W+Y
Sbjct: 246 QENSPEQLPWSY 257
>ref|XP_003356510.1| PREDICTED: NADH-cytochrome b5 reductase-like, partial [Sus scrofa].
Length = 170
Score = 55.8 bits (133), Expect = 4e-08
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Frame = +1
Query: 469 GKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTGI 648
G MSQ + S ++GD +RGP G Y +P +L M+A GTG+
Sbjct: 5 GLMSQCVKSWRVGDAAFWRGPFGSFCY----------------KPNQYGELLMLAAGTGL 48
Query: 649 TPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQ--P 822
PM+ ++++I + ED T L+ +T + I L+ L+E QAR N + +F L Q
Sbjct: 49 APMVPILQSITDNAEDETFVTLVGCFKTFEGIYLKAFLQE-QARFWN-VRTFFVLSQENS 106
Query: 823 PED--WTYSK----GFVSADMIREHLPAPAKDVLLLLCG 921
PE W+Y G + D++ E + + + L+CG
Sbjct: 107 PEQLPWSYRDKTRFGRLGQDLVDELVGSCRRKPFALVCG 145
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,953,858
Number of extensions: 853486
Number of successful extensions: 3247
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002636
(1078 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 456 e-125
Sscrofa_Chr01 186 2e-44
>Sscrofa_Chr10
|| Length = 79102373
Score = 456 bits (230), Expect = e-125
Identities = 317/342 (92%), Gaps = 3/342 (0%)
Strand = Plus / Plus
Query: 737 aggacataatcttacgggaggacttggaggagctgcaggcacgacaccccaatcagttta 796
||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||
Sbjct: 13050831 aggacataatcttacgggaggacttagaggagctgtgggtgcaacaccccaatcagttta 13050890
Query: 797 agctctggttcactctggatcagcccccagaagattggacctacagcaagggttttgtgt 856
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 13050891 agctctggttcactctggatcagccccc-gaagactggacctacagcaagggttttgtgt 13050949
Query: 857 ctgccgacatgatccgggagcacctgcctgccccagcaaaagacgtgttgctgctgctgt 916
||||||||||||||| |||||||||||||||||||||| | || ||| |||||||||||
Sbjct: 13050950 ctgccgacatgatccaggagcacctgcctgccccagcagaggatgtgctgctgctgctgg 13051009
Query: 917 gtgggcca-cccccatggtgcagctggcctgccacccccacctagacaaactgggctact 975
|||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| ||
Sbjct: 13051010 gtgggccaccccccatggtgcagctggcctgccaccccaacctggacaaactgggctcct 13051069
Query: 976 cacagaagatgcgcttca-ctactgagcatcctctcgtttccctggtctcgctgccagca 1034
| |||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |||
Sbjct: 13051070 cgcagaagatgcgcttcacctactgaacatcctctcgtttccctggtcttgctgctggca 13051129
Query: 1035 tctgcccccagccagcacctagtgctctgagccttagatgcc 1076
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13051130 tctgcccccagccagcacctagtgctctgagccctagatgcc 13051171
Score = 446 bits (225), Expect = e-122
Identities = 248/253 (98%), Gaps = 2/253 (0%)
Strand = Plus / Minus
Query: 828 agattggacctacagcaagggttttgtgtctgccgacatgatccgggagcacctgcctgc 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285152 agattggacctacagcaagggttttgtgtctgccgacatgatccgggagcacctgcctgc 29285093
Query: 888 cccagcaaaagacgtgttgctgctgctgtgtgggccac-ccccatggtgcagctggcctg 946
||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 29285092 cccagcagaggacgtgttgctgctgctgtgtgggccaccccccatggtgcagctggcctg 29285033
Query: 947 ccacccccacctagacaaactgggctactcacagaagatgcgcttca-ctactgagcatc 1005
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 29285032 ccaccccaacctagacaaactgggctactcacagaagatgcgcttcacctactgagcatc 29284973
Query: 1006 ctctcgtttccctggtctcgctgccagcatctgcccccagccagcacctagtgctctgag 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29284972 ctctcgtttccctggtctcgctgccagcatctgcccccagccagcacctagtgctctgag 29284913
Query: 1066 ccttagatgccct 1078
|||||||||||||
Sbjct: 29284912 ccttagatgccct 29284900
Score = 355 bits (179), Expect = 3e-95
Identities = 182/183 (99%)
Strand = Plus / Minus
Query: 67 gggcggcggtcacgctgccccttctgcccacagagtccagtcctgctggcttccctgggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29289574 gggcggcggtcacgctgccccttctgcccacagagtccagtcctgctggcttccctgggg 29289515
Query: 127 gtggggctgctgagtctgtttggcctagctctgggctcctacctcctgcggagatcccgc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29289514 gtggggctgctgagtctgtttggcctagctctgggctcctacctcctgcggagatcccgc 29289455
Query: 187 cggccgctggtcacgctcctggaccccaatgaaaagtacctgctgcgactgttagataaa 246
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 29289454 cggccgctggtcacgctcttggaccccaatgaaaagtacctgctgcgactgttagataaa 29289395
Query: 247 acg 249
|||
Sbjct: 29289394 acg 29289392
Score = 264 bits (133), Expect = 9e-68
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 428 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288346 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 29288287
Query: 488 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288286 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 29288227
Query: 548 acaccgggaaagg 560
|||||||||||||
Sbjct: 29288226 acaccgggaaagg 29288214
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 322 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288688 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 29288629
Query: 382 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 431
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29288628 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 29288579
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 727 cagaccgaaaaggacataatcttacgggaggacttggaggagctgcaggcacgacacccc 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285507 cagaccgaaaaggacataatcttacgggaggacttggaggagctgcaggcacgacacccc 29285448
Query: 787 aatcagtttaagctctggttcactctggatcagcccccagaag 829
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29285447 aatcagtttaagctctggttcactctggatcagcccccagaag 29285405
Score = 194 bits (98), Expect = 7e-47
Identities = 107/110 (97%)
Strand = Plus / Plus
Query: 322 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 381
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 78746579 ggcaaacatgtctacctctctgcctgcatcaacggcagtcttgtcatcaggccctacact 78746638
Query: 382 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 431
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 78746639 cccatcaccagcgatgaggaccaaggctacgtggatcgtgtcatcaaggt 78746688
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 641 cagggatcaccccgatgctgcagctgatccgggccatcctgaaagacccagaagatccaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29286323 cagggatcaccccgatgctgcagctgatccgggccatcctgaaagacccagaagatccaa 29286264
Query: 701 cccagtgctttctgctttttgccaaccag 729
|||||||||||||||||||||||||||||
Sbjct: 29286263 cccagtgctttctgctttttgccaaccag 29286235
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 558 aggaaagttcagcattcagcccaacaagaaatctccgccggaaccccgagtggccaggaa 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29287534 aggaaagttcagcattcagcccaacaagaaatctccgccggaaccccgagtggccaggaa 29287475
Query: 618 actgggaatgattgccggaggcacagg 644
|||||||||||||||||||||||||||
Sbjct: 29287474 actgggaatgattgccggaggcacagg 29287448
Score = 161 bits (81), Expect = 1e-36
Identities = 120/133 (90%)
Strand = Plus / Plus
Query: 428 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 487
|||||||| |||||||| |||||||||||||||||||||| || ||| |||||| |||||
Sbjct: 78746926 aggtctacttgaagggcatgcaccccaaatttcctgagggtggaaaggtgtctctgtacc 78746985
Query: 488 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 547
||||||||||||||||||||||||||||| | || ||||| ||||||||||||| ||||
Sbjct: 78746986 agaatagcctgaagcttggggatgtggtggcgatttgagggtccagtgggttgcttactt 78747045
Query: 548 acaccgggaaagg 560
|||| ||||||||
Sbjct: 78747046 acactgggaaagg 78747058
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 249 gaccgtgaaccacaacactaagaagttccgctttgccctgcccaccgcccaccacgttct 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29289277 gaccgtgaaccacaacactaagaagttccgctttgccctgcccaccgcccaccacgttct 29289218
Query: 309 ggggctgcctgtggg 323
|||||||||||||||
Sbjct: 29289217 ggggctgcctgtggg 29289203
Score = 109 bits (55), Expect = 3e-21
Identities = 58/59 (98%)
Strand = Plus / Minus
Query: 10 gatctgcaggccggctgcgcggtggaggtcgcggttctccgtcatggggttccagccgg 68
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 29289916 gatctgcaggccggctgcgcggtggaggtcccggttctccgtcatggggttccagccgg 29289858
>Sscrofa_Chr01
|| Length = 315321322
Score = 186 bits (94), Expect = 2e-44
Identities = 106/110 (96%)
Strand = Plus / Plus
Query: 322 ggcaaacatgtctacctctctgcccgcatcgacggcagtcttgtcatcaggccctacact 381
|||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct: 312977819 ggcaaacatgtctacctctctgcctgcatcaatggcagtcttgtcatcaggccctacact 312977878
Query: 382 cccatcaccagcgatgaggaccaaggctacgtggatcttgtcatcaaggt 431
||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312977879 cccatcaccagcgatgaggaccaaggctacgtggatcgtgtcatcaaggt 312977928
Score = 168 bits (85), Expect = 4e-39
Identities = 121/133 (90%)
Strand = Plus / Plus
Query: 428 aggtctacctgaagggcgtgcaccccaaatttcctgagggagggaagatgtctcagtacc 487
|||||||| |||||||| |||||||||||||||||||||| || ||| |||||| |||||
Sbjct: 312978166 aggtctacttgaagggcatgcaccccaaatttcctgagggtggaaaggtgtctctgtacc 312978225
Query: 488 tgaatagcctgaagcttggggatgtggtggagtttcgagggcccagtgggttgctcactt 547
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct: 312978226 agaatagcctgaagcttggggatgtggtggagatttgagggtccagtgggttgcttactt 312978285
Query: 548 acaccgggaaagg 560
|||| ||||||||
Sbjct: 312978286 acactgggaaagg 312978298
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,109,956
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 14
Length of query: 1078
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1057
Effective length of database: 2,808,413,156
Effective search space: 2968492705892
Effective search space used: 2968492705892
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)