Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014924.1| bystin [Bos taurus]. 485 e-137
>ref|NP_001014924.1| bystin [Bos taurus].
Length = 435
Score = 485 bits (1249), Expect = e-137
Identities = 246/325 (75%), Positives = 264/325 (81%)
Frame = +3
Query: 60 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 239
MPK KAARGA QEKHAPLA+QILAG+AVRA YVGP
Sbjct: 1 MPKFKAARGAGVQEKHAPLAEQILAGDAVRAGTREKRRGRGTGDEEEEYVGPRLTRRILQ 60
Query: 240 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 419
HG+GDRPA P++RTTRLGPG PQDGSDDEEWPTL +AA GPGYQAE
Sbjct: 61 QARQQQEELEAEHGSGDRPAVPRERTTRLGPGVPQDGSDDEEWPTLEQAAARAGPGYQAE 120
Query: 420 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXXXX 599
VV+DPEDERAIE+FMN+NPPARRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 121 VVVDPEDERAIEMFMNQNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPVPQLDPRVL 180
Query: 600 EVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 779
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILY+TEPEAW+AAAMYQATRIFASNLK
Sbjct: 181 EVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEAWTAAAMYQATRIFASNLK 240
Query: 780 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 959
E AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTCTL
Sbjct: 241 ERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTL 300
Query: 960 RGSIILGSIITKCSIPVLHSSAAML 1034
R +II+GSIITKCSIPVLHSSAAML
Sbjct: 301 REAIIVGSIITKCSIPVLHSSAAML 325
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,836,663
Number of extensions: 1104835
Number of successful extensions: 6627
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6461
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,273,310
Effective search space: 3439867710
Effective search space used: 3439867710
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532135.2| PREDICTED: similar to bystin [Canis familiaris]. 465 e-131
>ref|XP_532135.2| PREDICTED: similar to bystin [Canis familiaris].
Length = 573
Score = 465 bits (1197), Expect = e-131
Identities = 240/331 (72%), Positives = 259/331 (78%), Gaps = 2/331 (0%)
Frame = +3
Query: 48 FSSEMPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXX 227
F + PK K A GQEKHAPLA+QILAG+A RA YVGP
Sbjct: 133 FGKKWPKFKPDGVAAGQEKHAPLAEQILAGDAARAGPREKRRGRGTREEDEEYVGPRLTR 192
Query: 228 XXXXXXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEE--WPTLAKAATMTG 401
HGTG++ AAP++RTTRLGPG PQDGSDDE+ WPTL KAATMTG
Sbjct: 193 RILQQARQQQEELETEHGTGNKAAAPRERTTRLGPGVPQDGSDDEDEDWPTLEKAATMTG 252
Query: 402 PGYQAEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXX 581
G+ EVV+D EDERAIE+FMNKNPPARRTLADIIMEKLTEK+TEVE VMSEVSG
Sbjct: 253 AGHHTEVVVDAEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVEMVMSEVSGFPMPQ 312
Query: 582 XXXXXXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRI 761
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILY+TEPEAW+AAAMYQATRI
Sbjct: 313 LDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEAWTAAAMYQATRI 372
Query: 762 FASNLKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCE 941
FASNLKE AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCE
Sbjct: 373 FASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCE 432
Query: 942 SGTCTLRGSIILGSIITKCSIPVLHSSAAML 1034
SGTCTLR +II+GSIITKCSIPVLHSSAAML
Sbjct: 433 SGTCTLREAIIVGSIITKCSIPVLHSSAAML 463
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,518,934
Number of extensions: 1145954
Number of successful extensions: 7238
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7074
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 240
Effective length of database: 15,407,560
Effective search space: 3697814400
Effective search space used: 3697814400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004044.3| bystin [Homo sapiens]. 484 e-137
>ref|NP_004044.3| bystin [Homo sapiens].
Length = 437
Score = 484 bits (1246), Expect = e-137
Identities = 249/327 (76%), Positives = 264/327 (80%), Gaps = 2/327 (0%)
Frame = +3
Query: 60 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 239
MPK KAARG GQEKHAPLADQILAGNAVRA YVGP
Sbjct: 1 MPKFKAARGVGGQEKHAPLADQILAGNAVRAGVREKRRGRGTGEAEEEYVGPRLSRRILQ 60
Query: 240 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDE--EWPTLAKAATMTGPGYQ 413
HGTGD+PAAP++RTTRLGP PQDGSDDE EWPTL KAATMT G+
Sbjct: 61 QARQQQEELEAEHGTGDKPAAPRERTTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHH 120
Query: 414 AEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXX 593
AEVV+DPEDERAIE+FMNKNPPARRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 121 AEVVVDPEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPR 180
Query: 594 XXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASN 773
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILYVTEPEAW+AAAMYQATRIFASN
Sbjct: 181 VLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASN 240
Query: 774 LKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTC 953
LKE AQRFYNLVLLPRVRDD+AEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTC
Sbjct: 241 LKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTC 300
Query: 954 TLRGSIILGSIITKCSIPVLHSSAAML 1034
TLR +II+GSIITKCSIPVLHSSAAML
Sbjct: 301 TLREAIIVGSIITKCSIPVLHSSAAML 327
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,468,743
Number of extensions: 1096001
Number of successful extensions: 6239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6118
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 241
Effective length of database: 14,901,872
Effective search space: 3591351152
Effective search space used: 3591351152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058555.3| bystin [Mus musculus]. 462 e-130
>ref|NP_058555.3| bystin [Mus musculus].
Length = 436
Score = 462 bits (1190), Expect = e-130
Identities = 240/327 (73%), Positives = 256/327 (78%), Gaps = 2/327 (0%)
Frame = +3
Query: 60 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 239
MPK K RGA +EKHAPLA+QILAGNAVRA YVGP
Sbjct: 1 MPKFKVTRGASNREKHAPLAEQILAGNAVRAGTREKRRGREVEEEEE-YVGPRLSRRILQ 59
Query: 240 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSD--DEEWPTLAKAATMTGPGYQ 413
HG GDR A P++R TRLGPG PQDGSD DEEWPTL KAA M G +Q
Sbjct: 60 QARQQQEELETDHGAGDRSAPPRERATRLGPGLPQDGSDEEDEEWPTLEKAAKMAGVDHQ 119
Query: 414 AEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXX 593
AEV++DPEDERAIE+FMNKNPP RRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 120 AEVIVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPR 179
Query: 594 XXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASN 773
EVYRGVREVL KYRSGKLP AFK+IPALSNWE+ILYVTEPEAW+AAAMYQATRIFASN
Sbjct: 180 VLEVYRGVREVLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTAAAMYQATRIFASN 239
Query: 774 LKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTC 953
LKE AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTC
Sbjct: 240 LKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTC 299
Query: 954 TLRGSIILGSIITKCSIPVLHSSAAML 1034
TLR +II+GSIITKCSIPVLHSSAAML
Sbjct: 300 TLREAIIVGSIITKCSIPVLHSSAAML 326
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,315,054
Number of extensions: 888000
Number of successful extensions: 4910
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4780
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 242
Effective length of database: 12,553,887
Effective search space: 3038040654
Effective search space used: 3038040654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124203.1| bystin [Sus scrofa]. 531 e-151
>ref|NP_001124203.1| bystin [Sus scrofa].
Length = 435
Score = 531 bits (1368), Expect = e-151
Identities = 274/325 (84%), Positives = 275/325 (84%)
Frame = +3
Query: 60 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 239
MPKLKAARGAEGQEKHAPLADQILAGNAVRA YVGP
Sbjct: 1 MPKLKAARGAEGQEKHAPLADQILAGNAVRAGTREKRRGRGTGEEEEEYVGPRLTRRILQ 60
Query: 240 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 419
HGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE
Sbjct: 61 QARQQQEELEAEHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 120
Query: 420 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXXXX 599
VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSG
Sbjct: 121 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGLPLPRLNPRLL 180
Query: 600 EVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 779
EVYRGVREVLSKYRSGKLPTAFKM PALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK
Sbjct: 181 EVYRGVREVLSKYRSGKLPTAFKMTPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 240
Query: 780 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 959
EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL
Sbjct: 241 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 300
Query: 960 RGSIILGSIITKCSIPVLHSSAAML 1034
R +IILGSIITKCSIPVLHSSAAML
Sbjct: 301 REAIILGSIITKCSIPVLHSSAAML 325
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,865,186
Number of extensions: 718913
Number of successful extensions: 4505
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4418
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 244
Effective length of database: 8,854,232
Effective search space: 2160432608
Effective search space used: 2160432608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002637
(1034 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 636 e-180
>Sscrofa_Chr07
|| Length = 134764511
Score = 636 bits (321), Expect = e-180
Identities = 327/329 (99%)
Strand = Plus / Plus
Query: 1 actcagagcttttcctctgtccccacatgtgaaacttcccggcgaggttttctagcgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476668 actcagagcttttcctctgtccccacatgtgaaacttcccggcgaggttttctagcgaaa 42476727
Query: 61 tgcccaaactcaaggccgcccgcggggccgagggtcaggaaaagcatgcgcccctggccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476728 tgcccaaactcaaggccgcccgcggggccgagggtcaggaaaagcatgcgcccctggccg 42476787
Query: 121 accaaatcctggctgggaatgcggtgcgggcggggacccgggaaaagcggcggggtcgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476788 accaaatcctggctgggaatgcggtgcgggcggggacccgggaaaagcggcggggtcgcg 42476847
Query: 181 gcaccggagaagaggaggaggagtacgtggggcctcggctgacccgacggattttgcaac 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476848 gaaccggagaagaggaggaggagtacgtggggcctcggctgacccgacggattttgcaac 42476907
Query: 241 aagcgcggcagcagcaagaggagctcgaggctgagcatgggaccggggacaggccggcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476908 aagcgcggcagcagcaagaggagctcgaggctgagcatgggaccggggacaggccggcgg 42476967
Query: 301 cacctcaggatcgcaccacgcggctgggt 329
||||||| |||||||||||||||||||||
Sbjct: 42476968 cacctcaagatcgcaccacgcggctgggt 42476996
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 482 caggcgcaccctggccgacatcatcatggagaagctgaccgagaagaagacggaggtcga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42484533 caggcgcaccctggccgacatcatcatggagaagctgaccgagaagaagacggaggtcga 42484592
Query: 542 gagcgtcatgtcggaggtgtcaggcctcccgctgccccggctgaacccccggctcctgga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42484593 gagcgtcatgtcggaggtgtcaggcctcccgctgccccggctgaacccccggctcctgga 42484652
Query: 602 ggtctaccgaggggtcagggaggt 625
||||||||||||||||||||||||
Sbjct: 42484653 ggtctaccgaggggtcagggaggt 42484676
Score = 264 bits (133), Expect = 9e-68
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 622 aggtgttgtccaagtaccgcagcgggaaactacccacggcttttaagatgatccctgcgc 681
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42484975 aggtgttgtccaagtaccgcagcggaaaactacccacggcttttaagatgatccctgcgc 42485034
Query: 682 tgtccaactgggaggagatcctctacgtcaccgagcccgaggcctggagcgcagcggcca 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42485035 tgtccaactgggaggagatcctctacgtcaccgagcccgaggcctggagcgcagcggcca 42485094
Query: 742 tgtaccaagccacgagg 758
|||||||||||||||||
Sbjct: 42485095 tgtaccaagccacgagg 42485111
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,243,469
Number of extensions: 134
Number of successful extensions: 134
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 3
Length of query: 1034
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1013
Effective length of database: 2,808,413,156
Effective search space: 2844922527028
Effective search space used: 2844922527028
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)