Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014924.1| bystin [Bos taurus]. 446 e-125
>ref|NP_001014924.1| bystin [Bos taurus].
Length = 435
Score = 446 bits (1146), Expect = e-125
Identities = 225/302 (74%), Positives = 241/302 (79%)
Frame = +1
Query: 55 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 234
MPK KAARGA QEKHAPLA+QILAG+AVRA YVGP
Sbjct: 1 MPKFKAARGAGVQEKHAPLAEQILAGDAVRAGTREKRRGRGTGDEEEEYVGPRLTRRILQ 60
Query: 235 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 414
HG+GDRPA P++RTTRLGPG PQDGSDDEEWPTL +AA GPGYQAE
Sbjct: 61 QARQQQEELEAEHGSGDRPAVPRERTTRLGPGVPQDGSDDEEWPTLEQAAARAGPGYQAE 120
Query: 415 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXXXX 594
VV+DPEDERAIE+FMN+NPPARRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 121 VVVDPEDERAIEMFMNQNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPVPQLDPRVL 180
Query: 595 EVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 774
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILY+TEPEAW+AAAMYQATRIFASNLK
Sbjct: 181 EVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEAWTAAAMYQATRIFASNLK 240
Query: 775 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 954
E AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTCTL
Sbjct: 241 ERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTCTL 300
Query: 955 GE 960
E
Sbjct: 301 RE 302
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,133,749
Number of extensions: 1187123
Number of successful extensions: 6716
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6556
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,273,310
Effective search space: 3411321090
Effective search space used: 3411321090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532135.2| PREDICTED: similar to bystin [Canis familiaris]. 426 e-119
>ref|XP_532135.2| PREDICTED: similar to bystin [Canis familiaris].
Length = 573
Score = 426 bits (1094), Expect = e-119
Identities = 219/308 (71%), Positives = 236/308 (76%), Gaps = 2/308 (0%)
Frame = +1
Query: 43 FSSEMPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXX 222
F + PK K A GQEKHAPLA+QILAG+A RA YVGP
Sbjct: 133 FGKKWPKFKPDGVAAGQEKHAPLAEQILAGDAARAGPREKRRGRGTREEDEEYVGPRLTR 192
Query: 223 XXXXXXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEE--WPTLAKAATMTG 396
HGTG++ AAP++RTTRLGPG PQDGSDDE+ WPTL KAATMTG
Sbjct: 193 RILQQARQQQEELETEHGTGNKAAAPRERTTRLGPGVPQDGSDDEDEDWPTLEKAATMTG 252
Query: 397 PGYQAEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXX 576
G+ EVV+D EDERAIE+FMNKNPPARRTLADIIMEKLTEK+TEVE VMSEVSG
Sbjct: 253 AGHHTEVVVDAEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVEMVMSEVSGFPMPQ 312
Query: 577 XXXXXXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRI 756
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILY+TEPEAW+AAAMYQATRI
Sbjct: 313 LDPRVLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYITEPEAWTAAAMYQATRI 372
Query: 757 FASNLKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCE 936
FASNLKE AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCE
Sbjct: 373 FASNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCE 432
Query: 937 SGTCTLGE 960
SGTCTL E
Sbjct: 433 SGTCTLRE 440
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,870,023
Number of extensions: 1230023
Number of successful extensions: 7306
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7141
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 239
Effective length of database: 15,440,896
Effective search space: 3690374144
Effective search space used: 3690374144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004044.3| bystin [Homo sapiens]. 444 e-125
>ref|NP_004044.3| bystin [Homo sapiens].
Length = 437
Score = 444 bits (1143), Expect = e-125
Identities = 228/304 (75%), Positives = 241/304 (79%), Gaps = 2/304 (0%)
Frame = +1
Query: 55 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 234
MPK KAARG GQEKHAPLADQILAGNAVRA YVGP
Sbjct: 1 MPKFKAARGVGGQEKHAPLADQILAGNAVRAGVREKRRGRGTGEAEEEYVGPRLSRRILQ 60
Query: 235 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDE--EWPTLAKAATMTGPGYQ 408
HGTGD+PAAP++RTTRLGP PQDGSDDE EWPTL KAATMT G+
Sbjct: 61 QARQQQEELEAEHGTGDKPAAPRERTTRLGPRMPQDGSDDEDEEWPTLEKAATMTAAGHH 120
Query: 409 AEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXX 588
AEVV+DPEDERAIE+FMNKNPPARRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 121 AEVVVDPEDERAIEMFMNKNPPARRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPR 180
Query: 589 XXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASN 768
EVYRGVREVLSKYRSGKLP AFK+IPALSNWE+ILYVTEPEAW+AAAMYQATRIFASN
Sbjct: 181 VLEVYRGVREVLSKYRSGKLPKAFKIIPALSNWEQILYVTEPEAWTAAAMYQATRIFASN 240
Query: 769 LKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTC 948
LKE AQRFYNLVLLPRVRDD+AEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTC
Sbjct: 241 LKERMAQRFYNLVLLPRVRDDVAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTC 300
Query: 949 TLGE 960
TL E
Sbjct: 301 TLRE 304
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,791,441
Number of extensions: 1180805
Number of successful extensions: 6406
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6287
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 239
Effective length of database: 14,901,872
Effective search space: 3561547408
Effective search space used: 3561547408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058555.3| bystin [Mus musculus]. 423 e-118
>ref|NP_058555.3| bystin [Mus musculus].
Length = 436
Score = 423 bits (1087), Expect = e-118
Identities = 219/304 (72%), Positives = 233/304 (76%), Gaps = 2/304 (0%)
Frame = +1
Query: 55 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 234
MPK K RGA +EKHAPLA+QILAGNAVRA YVGP
Sbjct: 1 MPKFKVTRGASNREKHAPLAEQILAGNAVRAGTREKRRGREVEEEEE-YVGPRLSRRILQ 59
Query: 235 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSD--DEEWPTLAKAATMTGPGYQ 408
HG GDR A P++R TRLGPG PQDGSD DEEWPTL KAA M G +Q
Sbjct: 60 QARQQQEELETDHGAGDRSAPPRERATRLGPGLPQDGSDEEDEEWPTLEKAAKMAGVDHQ 119
Query: 409 AEVVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXX 588
AEV++DPEDERAIE+FMNKNPP RRTLADIIMEKLTEK+TEVE+VMSEVSG
Sbjct: 120 AEVIVDPEDERAIEMFMNKNPPVRRTLADIIMEKLTEKQTEVETVMSEVSGFPMPQLDPR 179
Query: 589 XXEVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASN 768
EVYRGVREVL KYRSGKLP AFK+IPALSNWE+ILYVTEPEAW+AAAMYQATRIFASN
Sbjct: 180 VLEVYRGVREVLCKYRSGKLPKAFKVIPALSNWEQILYVTEPEAWTAAAMYQATRIFASN 239
Query: 769 LKEHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTC 948
LKE AQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGIL+PLCESGTC
Sbjct: 240 LKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILIPLCESGTC 299
Query: 949 TLGE 960
TL E
Sbjct: 300 TLRE 303
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,446,497
Number of extensions: 957479
Number of successful extensions: 5071
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4944
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 240
Effective length of database: 12,553,887
Effective search space: 3012932880
Effective search space used: 3012932880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124203.1| bystin [Sus scrofa]. 490 e-139
>ref|NP_001124203.1| bystin [Sus scrofa].
Length = 435
Score = 490 bits (1262), Expect = e-139
Identities = 252/302 (83%), Positives = 252/302 (83%)
Frame = +1
Query: 55 MPKLKAARGAEGQEKHAPLADQILAGNAVRAXXXXXXXXXXXXXXXXXYVGPXXXXXXXX 234
MPKLKAARGAEGQEKHAPLADQILAGNAVRA YVGP
Sbjct: 1 MPKLKAARGAEGQEKHAPLADQILAGNAVRAGTREKRRGRGTGEEEEEYVGPRLTRRILQ 60
Query: 235 XXXXXXXXXXXXHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 414
HGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE
Sbjct: 61 QARQQQEELEAEHGTGDRPAAPQDRTTRLGPGAPQDGSDDEEWPTLAKAATMTGPGYQAE 120
Query: 415 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGXXXXXXXXXXX 594
VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSG
Sbjct: 121 VVIDPEDERAIELFMNKNPPARRTLADIIMEKLTEKKTEVESVMSEVSGLPLPRLNPRLL 180
Query: 595 EVYRGVREVLSKYRSGKLPTAFKMIPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 774
EVYRGVREVLSKYRSGKLPTAFKM PALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK
Sbjct: 181 EVYRGVREVLSKYRSGKLPTAFKMTPALSNWEEILYVTEPEAWSAAAMYQATRIFASNLK 240
Query: 775 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 954
EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL
Sbjct: 241 EHKAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKPGAWFKGILLPLCESGTCTL 300
Query: 955 GE 960
E
Sbjct: 301 RE 302
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,702,543
Number of extensions: 772462
Number of successful extensions: 4545
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4458
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 242
Effective length of database: 8,854,232
Effective search space: 2142724144
Effective search space used: 2142724144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002638
(1028 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 618 e-174
>Sscrofa_Chr07
|| Length = 134764511
Score = 618 bits (312), Expect = e-174
Identities = 321/324 (99%)
Strand = Plus / Plus
Query: 1 gagcttttcctctgtccccacatgtgaaacttcccggtgaggttttctagcgaaatgccc 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 42476673 gagcttttcctctgtccccacatgtgaaacttcccggcgaggttttctagcgaaatgccc 42476732
Query: 61 aaactcaaggccgcccgcggggccgagggtcaggaaaagcatgcgcccctggccgaccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476733 aaactcaaggccgcccgcggggccgagggtcaggaaaagcatgcgcccctggccgaccaa 42476792
Query: 121 atcctggctgggaatgcggtgcgggcggggacccgggaaaagcggcggggtcgcggcacc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 42476793 atcctggctgggaatgcggtgcgggcggggacccgggaaaagcggcggggtcgcggaacc 42476852
Query: 181 ggagaagaggaggaggagtacgtggggcctcggctgacccgacggattttgcaacaagcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476853 ggagaagaggaggaggagtacgtggggcctcggctgacccgacggattttgcaacaagcg 42476912
Query: 241 cggcagcagcaagaggagctcgaggctgagcatgggaccggggacaggccggcggcacct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42476913 cggcagcagcaagaggagctcgaggctgagcatgggaccggggacaggccggcggcacct 42476972
Query: 301 caggatcgcaccacgcggctgggt 324
|| |||||||||||||||||||||
Sbjct: 42476973 caagatcgcaccacgcggctgggt 42476996
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 477 caggcgcaccctggccgacatcatcatggagaagctgaccgagaagaagacggaggtcga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42484533 caggcgcaccctggccgacatcatcatggagaagctgaccgagaagaagacggaggtcga 42484592
Query: 537 gagcgtcatgtcggaggtgtcaggcctcccgctgccccggctgaacccccggctcctgga 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42484593 gagcgtcatgtcggaggtgtcaggcctcccgctgccccggctgaacccccggctcctgga 42484652
Query: 597 ggtctaccgaggggtcagggaggt 620
||||||||||||||||||||||||
Sbjct: 42484653 ggtctaccgaggggtcagggaggt 42484676
Score = 264 bits (133), Expect = 9e-68
Identities = 136/137 (99%)
Strand = Plus / Plus
Query: 617 aggtgttgtccaagtaccgcagcgggaaactacccacggcttttaagatgatccctgcgc 676
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 42484975 aggtgttgtccaagtaccgcagcggaaaactacccacggcttttaagatgatccctgcgc 42485034
Query: 677 tgtccaactgggaggagatcctctacgtcaccgagcccgaggcctggagcgcagcggcca 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42485035 tgtccaactgggaggagatcctctacgtcaccgagcccgaggcctggagcgcagcggcca 42485094
Query: 737 tgtaccaagccacgagg 753
|||||||||||||||||
Sbjct: 42485095 tgtaccaagccacgagg 42485111
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,209,566
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 3
Length of query: 1028
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1007
Effective length of database: 2,808,413,156
Effective search space: 2828072048092
Effective search space used: 2828072048092
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)