Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030438.1| RNA-binding motif, single-stranded-interacti... 684 0.0
Alignment gi|XP_002696917.1| PREDICTED: RNA binding motif, single strande... 517 e-147
Alignment gi|XP_001252034.2| PREDICTED: RNA binding motif, single strande... 517 e-147
Alignment gi|NP_001029537.1| RNA-binding motif, single-stranded-interacti... 503 e-142
Alignment gi|XP_002707879.1| PREDICTED: ELAV-like 2-like [Bos taurus]. 106 6e-23
Alignment gi|NP_001075075.1| ELAV-like protein 4 [Bos taurus]. 101 2e-21
Alignment gi|NP_001069922.1| ELAV-like protein 1 [Bos taurus]. 97 3e-20
Alignment gi|XP_002688919.1| PREDICTED: ELAV-like protein 3-like [Bos tau... 96 8e-20
Alignment gi|XP_887465.3| PREDICTED: ELAV-like protein 3 isoform 8 [Bos t... 96 8e-20
Alignment gi|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]. 80 6e-15
>ref|NP_001030438.1| RNA-binding motif, single-stranded-interacting protein 1 [Bos
taurus].
Length = 403
Score = 684 bits (1764), Expect = 0.0
Identities = 346/406 (85%), Positives = 346/406 (85%)
Frame = +3
Query: 66 MGKVWKXXXXXXXXXXXXXXXXXXKQSLVXXXXXXXXXXXXXXXXXXXXXXXXXGWDQLS 245
MGKVWK KQSLV GWDQLS
Sbjct: 1 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 60
Query: 246 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXX 425
KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 426 XXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 605
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
Sbjct: 121 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 180
Query: 606 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 785
RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
Sbjct: 181 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 240
Query: 786 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 965
GRPWHREGE AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
Sbjct: 241 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 297
Query: 966 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 1145
VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
Sbjct: 298 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 357
Query: 1146 AMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
AMQGAYLPQYTHVQTAAVPVEEASGQQQV VETSNDHSPYTFQPNK
Sbjct: 358 AMQGAYLPQYTHVQTAAVPVEEASGQQQVTVETSNDHSPYTFQPNK 403
>ref|XP_002696917.1| PREDICTED: RNA binding motif, single stranded interacting protein
3-like [Bos taurus].
Length = 420
Score = 517 bits (1332), Expect = e-147
Identities = 264/369 (71%), Positives = 297/369 (80%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPASM+ PL QQM+HLSLG+TGTY
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPAMDHPMSMQPASMMGPLTQQMNHLSLGTTGTY 351
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDH- 1256
M A + MQG Y+PQYT V AV +E + SG QQQ+AV+T+++H
Sbjct: 352 MTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTASEHA 411
Query: 1257 SPYTFQPNK 1283
S Y++Q +K
Sbjct: 412 SAYSYQQSK 420
>ref|XP_001252034.2| PREDICTED: RNA binding motif, single stranded interacting protein 3
isoform 1 [Bos taurus].
Length = 420
Score = 517 bits (1332), Expect = e-147
Identities = 264/369 (71%), Positives = 297/369 (80%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPASM+ PL QQM+HLSLG+TGTY
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPAMDHPMSMQPASMMGPLTQQMNHLSLGTTGTY 351
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDH- 1256
M A + MQG Y+PQYT V AV +E + SG QQQ+AV+T+++H
Sbjct: 352 MTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTASEHA 411
Query: 1257 SPYTFQPNK 1283
S Y++Q +K
Sbjct: 412 SAYSYQQSK 420
>ref|NP_001029537.1| RNA-binding motif, single-stranded-interacting protein 2 [Bos
taurus].
Length = 407
Score = 503 bits (1296), Expect = e-142
Identities = 250/360 (69%), Positives = 291/360 (80%), Gaps = 10/360 (2%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
DQLSKTNLYIRGL P+TTDQDLVKLCQ YGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 51 DQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 110
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILRD+
Sbjct: 111 QKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDT 170
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
SGTSRGVGFARMESTEKCEA+I HFNGK+IKTPPGV AP++PLLCKFADGG KKRQN K
Sbjct: 171 SGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQGK 230
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPV 953
++ NGR W R G+ + GM LTYDP+T A+QNGFYP+PY++A NRM+TQ++++PY+ SP+
Sbjct: 231 FVQNGRAWPRNGD--MGGMALTYDPST-ALQNGFYPAPYNLAPNRMLTQSALSPYLPSPM 287
Query: 954 SAY---------QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHL 1106
++Y Q SPSWM Q Y++Q G+VLTP M+H +SLQPASM+ PL QQ+ HL
Sbjct: 288 TSYQRVTQTSPLQAPSPSWMHHQSYLMQPSGSVLTPGMDHPISLQPASMVGPLTQQLGHL 347
Query: 1107 SLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQ-QVAVETSNDHSPYTFQPNK 1283
SL STGTY+P +AMQGAYL QYT V +++V VEE+ QQ QV V+ ++H Y+FQ NK
Sbjct: 348 SLSSTGTYVPTAAAMQGAYLSQYTPVPSSSVSVEESGSQQSQVPVDAPSEHGVYSFQFNK 407
>ref|XP_002707879.1| PREDICTED: ELAV-like 2-like [Bos taurus].
Length = 620
Score = 106 bits (264), Expect = 6e-23
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 311 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 370
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 371 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 430
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 431 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 484
Query: 759 ---------QNPNKYIPNG----------RPWHREGEVRLAGMTLTYDPTT 854
Q+PN+ P P +G LAG+ + P T
Sbjct: 485 NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 535
>ref|NP_001075075.1| ELAV-like protein 4 [Bos taurus].
Length = 366
Score = 101 bits (252), Expect = 2e-21
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 17/207 (8%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++ L G+I S K + DK T + GYGFV++ P
Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 104 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 163
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + P G TEP+ KFA+ +K
Sbjct: 164 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPSGA---TEPITVKFANNPSQKS 217
Query: 759 ---------QNPNKYIPNGRPWHREGE 812
Q+PN+ P P H + +
Sbjct: 218 SQALLSQLYQSPNRRYPG--PLHHQAQ 242
>ref|NP_001069922.1| ELAV-like protein 1 [Bos taurus].
Length = 326
Score = 97.4 bits (241), Expect = 3e-20
Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 8/188 (4%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
D + +TNL + LP N T +L L G++ S K I DK GYGFV++ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVIS 572
+Q++ K P+ NLYIS LP +M ++++E+M FG++I+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIIN 134
Query: 573 TRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQ 749
+R+L D ++G SRGV F R + + E I FNG PPG S EP+ KFA
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSS---EPITVKFA---- 184
Query: 750 KKRQNPNK 773
NPN+
Sbjct: 185 ---ANPNQ 189
>ref|XP_002688919.1| PREDICTED: ELAV-like protein 3-like [Bos taurus].
Length = 407
Score = 95.9 bits (237), Expect = 8e-20
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T + L G I S K + DK T + GYGFV++ P
Sbjct: 84 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 143
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++E+E + +G++I++RI
Sbjct: 144 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 203
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 755
L D +G SRGVGF R + + E I NG + P G + EP+ KFA+ +K
Sbjct: 204 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 256
>ref|XP_887465.3| PREDICTED: ELAV-like protein 3 isoform 8 [Bos taurus].
Length = 400
Score = 95.9 bits (237), Expect = 8e-20
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T + L G I S K + DK T + GYGFV++ P
Sbjct: 77 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 136
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++E+E + +G++I++RI
Sbjct: 137 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 196
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 755
L D +G SRGVGF R + + E I NG + P G + EP+ KFA+ +K
Sbjct: 197 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 249
>ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus].
Length = 636
Score = 79.7 bits (195), Expect = 6e-15
Identities = 89/374 (23%), Positives = 147/374 (39%), Gaps = 38/374 (10%)
Frame = +3
Query: 249 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF----------D 398
TN+YI+ + D+ L L +G +S K + D++ K KG+GFV F D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 399 SPXXXXXXXXXXXXXGVQAQMAKQQE---------QDP------TNLYISNLPLSMDEQE 533
Q ++ +Q E QD NLY+ NL +D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 534 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 713
L PFG + S +++ + G S+G GF S E+ + NG+ + T
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------AT 360
Query: 714 EPLLCKFADGGQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPY 890
+PL A ++++ + N+Y+ R+A + +P + N + P+P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-----------RMASVRAVPNP----VINPYQPAPP 405
Query: 891 SIATNRMITQTSITPYIASPVSAYQVQ-SPSW----MQPQPYILQHPGAVLTPSMEHTMS 1055
S I QT P Q++ SP W +P P+ PGA+ + S
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPF-QNMPGAIRPAAPRPPFS 464
Query: 1056 -LQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGA------YLPQYTHVQTAAVPVEEA 1214
++PAS P ++ ST T P +A A +PQY + P +
Sbjct: 465 TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL 524
Query: 1215 SGQQQVAVETSNDH 1256
+ Q QV ++ H
Sbjct: 525 NAQPQVTMQQPAVH 538
Score = 70.1 bits (170), Expect = 5e-12
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 9/187 (4%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
+LY+ L P+ T+ L + P G I+S + D T + GY +V+F P
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 432 XXXXGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 584
++ + + ++DP+ N++I NL S+D + L + FG ++S +++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 585 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQN 764
D +G S+G GF E+ E E I NG + + + A+ G + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 765 PNKYIPN 785
N YI N
Sbjct: 191 TNVYIKN 197
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,911,974
Number of extensions: 1484801
Number of successful extensions: 6062
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5985
Number of HSP's successfully gapped: 41
Length of query: 501
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 395
Effective length of database: 14,174,046
Effective search space: 5598748170
Effective search space used: 5598748170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535930.2| PREDICTED: similar to RNA binding motif, single... 667 0.0
Alignment gi|XP_862067.1| PREDICTED: similar to RNA binding motif, single... 521 e-148
Alignment gi|XP_850695.1| PREDICTED: similar to RNA binding motif, single... 511 e-145
Alignment gi|XP_857653.1| PREDICTED: similar to RNA binding motif, single... 491 e-139
Alignment gi|XP_538236.2| PREDICTED: similar to RNA binding motif, single... 488 e-138
Alignment gi|XP_857534.1| PREDICTED: similar to RNA binding motif, single... 486 e-137
Alignment gi|XP_542749.2| PREDICTED: similar to RNA binding motif, single... 481 e-136
Alignment gi|XP_857612.1| PREDICTED: similar to RNA binding motif, single... 468 e-132
Alignment gi|XP_857495.1| PREDICTED: similar to RNA binding motif, single... 468 e-132
Alignment gi|XP_865045.1| PREDICTED: similar to ELAV-like 2 isoform 3 iso... 106 7e-23
>ref|XP_535930.2| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 1 isoform b [Canis familiaris].
Length = 461
Score = 667 bits (1720), Expect = 0.0
Identities = 334/368 (90%), Positives = 335/368 (91%), Gaps = 16/368 (4%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 97 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPA 156
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR
Sbjct: 157 AAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 216
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP
Sbjct: 217 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 276
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
NKYIPNGRPWHREGE AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTS+TPYIAS
Sbjct: 277 NKYIPNGRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSLTPYIAS 333
Query: 948 PVSAYQ----------------VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS 1079
PVSAYQ VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS
Sbjct: 334 PVSAYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS 393
Query: 1080 PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHS 1259
PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQT AVPVEEASGQQQVAVETSNDHS
Sbjct: 394 PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTTAVPVEEASGQQQVAVETSNDHS 453
Query: 1260 PYTFQPNK 1283
PYTFQPNK
Sbjct: 454 PYTFQPNK 461
>ref|XP_862067.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 3 isoform 2 isoform 8 [Canis familiaris].
Length = 420
Score = 521 bits (1342), Expect = e-148
Identities = 265/369 (71%), Positives = 298/369 (80%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGTY
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTY 351
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDHS 1259
M A + MQG Y+PQYT V AV +E + SG QQQ+AV+TSN+H+
Sbjct: 352 MTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHA 411
Query: 1260 P-YTFQPNK 1283
P Y++Q +K
Sbjct: 412 PAYSYQQSK 420
>ref|XP_850695.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 3 isoform 1 isoform 6 [Canis familiaris].
Length = 437
Score = 511 bits (1315), Expect = e-145
Identities = 265/385 (68%), Positives = 298/385 (77%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTI 351
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E +
Sbjct: 352 QSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDT 411
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+TSN+H+P Y++Q +K
Sbjct: 412 SGQQQQIAVDTSNEHAPAYSYQQSK 436
>ref|XP_857653.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 2 isoform 5 [Canis familiaris].
Length = 399
Score = 491 bits (1265), Expect = e-139
Identities = 245/354 (69%), Positives = 282/354 (79%), Gaps = 2/354 (0%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQ YGKIVSTKAILDK+TNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTP GV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
KY+ NGR W R G+ + GM LTYDPTT A+QNGFYP+PY+I NRM+ Q++++PY+ S
Sbjct: 229 GKYVQNGRAWPRNGD--MGGMALTYDPTT-ALQNGFYPAPYNITPNRMLAQSALSPYLPS 285
Query: 948 PVSAYQV-QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTG 1124
PVS+YQV +PSWM Q Y++Q G+VL P M+H +SLQPASM+ PL QQ+ HLSL STG
Sbjct: 286 PVSSYQVLPNPSWMHHQSYLMQPSGSVLPPGMDHPISLQPASMMGPLTQQLGHLSLSSTG 345
Query: 1125 TYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQ-VAVETSNDHSPYTFQPNK 1283
TY+P + + GAY+ QY V ++V EE+ QQ V V+ +DH Y+FQ NK
Sbjct: 346 TYLPPAATVPGAYISQYAPVAASSVSAEESGSQQNPVPVDAPSDHGLYSFQFNK 399
>ref|XP_538236.2| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 2 isoform 1 [Canis familiaris].
Length = 407
Score = 488 bits (1257), Expect = e-138
Identities = 245/362 (67%), Positives = 282/362 (77%), Gaps = 10/362 (2%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQ YGKIVSTKAILDK+TNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTP GV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
KY+ NGR W R G+ + GM LTYDPTT A+QNGFYP+PY+I NRM+ Q++++PY+ S
Sbjct: 229 GKYVQNGRAWPRNGD--MGGMALTYDPTT-ALQNGFYPAPYNITPNRMLAQSALSPYLPS 285
Query: 948 PVSAY---------QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMS 1100
PVS+Y QV +PSWM Q Y++Q G+VL P M+H +SLQPASM+ PL QQ+
Sbjct: 286 PVSSYQRVTQTSPLQVPNPSWMHHQSYLMQPSGSVLPPGMDHPISLQPASMMGPLTQQLG 345
Query: 1101 HLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQ-VAVETSNDHSPYTFQP 1277
HLSL STGTY+P + + GAY+ QY V ++V EE+ QQ V V+ +DH Y+FQ
Sbjct: 346 HLSLSSTGTYLPPAATVPGAYISQYAPVAASSVSAEESGSQQNPVPVDAPSDHGLYSFQF 405
Query: 1278 NK 1283
NK
Sbjct: 406 NK 407
>ref|XP_857534.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 2 isoform 3 [Canis familiaris].
Length = 414
Score = 486 bits (1250), Expect = e-137
Identities = 245/369 (66%), Positives = 282/369 (76%), Gaps = 17/369 (4%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQ YGKIVSTKAILDK+TNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTP GV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
KY+ NGR W R G+ + GM LTYDPTT A+QNGFYP+PY+I NRM+ Q++++PY+ S
Sbjct: 229 GKYVQNGRAWPRNGD--MGGMALTYDPTT-ALQNGFYPAPYNITPNRMLAQSALSPYLPS 285
Query: 948 PVSAY----------------QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS 1079
PVS+Y QV +PSWM Q Y++Q G+VL P M+H +SLQPASM+
Sbjct: 286 PVSSYQVCKDTGQREKQTSPLQVPNPSWMHHQSYLMQPSGSVLPPGMDHPISLQPASMMG 345
Query: 1080 PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQ-VAVETSNDH 1256
PL QQ+ HLSL STGTY+P + + GAY+ QY V ++V EE+ QQ V V+ +DH
Sbjct: 346 PLTQQLGHLSLSSTGTYLPPAATVPGAYISQYAPVAASSVSAEESGSQQNPVPVDAPSDH 405
Query: 1257 SPYTFQPNK 1283
Y+FQ NK
Sbjct: 406 GLYSFQFNK 414
>ref|XP_542749.2| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 3 isoform 3 isoform 5 [Canis familiaris].
Length = 419
Score = 481 bits (1238), Expect = e-136
Identities = 256/385 (66%), Positives = 287/385 (74%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 114
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 115 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 174
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 175 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 234
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 235 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 290
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQ GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 291 VSTYQ-----------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTI 333
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E +
Sbjct: 334 QSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDT 393
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+TSN+H+P Y++Q +K
Sbjct: 394 SGQQQQIAVDTSNEHAPAYSYQQSK 418
>ref|XP_857612.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 2 isoform 4 [Canis familiaris].
Length = 381
Score = 468 bits (1203), Expect = e-132
Identities = 237/353 (67%), Positives = 271/353 (76%), Gaps = 1/353 (0%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQ YGKIVSTKAILDK+TNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTP GV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
KY+ NGR W R G+ + GM LTYDPTT A+QNGFYP+PY+I NRM+ Q++++PY+ S
Sbjct: 229 GKYVQNGRAWPRNGD--MGGMALTYDPTT-ALQNGFYPAPYNITPNRMLAQSALSPYLPS 285
Query: 948 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 1127
PVS+YQ G+VL P M+H +SLQPASM+ PL QQ+ HLSL STGT
Sbjct: 286 PVSSYQ-----------------GSVLPPGMDHPISLQPASMMGPLTQQLGHLSLSSTGT 328
Query: 1128 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQ-VAVETSNDHSPYTFQPNK 1283
Y+P + + GAY+ QY V ++V EE+ QQ V V+ +DH Y+FQ NK
Sbjct: 329 YLPPAATVPGAYISQYAPVAASSVSAEESGSQQNPVPVDAPSDHGLYSFQFNK 381
>ref|XP_857495.1| PREDICTED: similar to RNA binding motif, single stranded interacting
protein 2 isoform 2 [Canis familiaris].
Length = 407
Score = 468 bits (1203), Expect = e-132
Identities = 235/359 (65%), Positives = 272/359 (75%), Gaps = 7/359 (1%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQ YGKIVSTKAILDK+TNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKSTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTP GV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPAGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNG-----FYPSPYSIATNRMITQTSIT 932
KY+ NGR W R G++ L P T + FYP+PY+I NRM+ Q++++
Sbjct: 229 GKYVQNGRAWPRNGDMALNRCATQVSPLTLIFKQQLVVPVFYPAPYNITPNRMLAQSALS 288
Query: 933 PYIASPVSAYQV-QSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLS 1109
PY+ SPVS+YQV +PSWM Q Y++Q G+VL P M+H +SLQPASM+ PL QQ+ HLS
Sbjct: 289 PYLPSPVSSYQVLPNPSWMHHQSYLMQPSGSVLPPGMDHPISLQPASMMGPLTQQLGHLS 348
Query: 1110 LGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQ-VAVETSNDHSPYTFQPNK 1283
L STGTY+P + + GAY+ QY V ++V EE+ QQ V V+ +DH Y+FQ NK
Sbjct: 349 LSSTGTYLPPAATVPGAYISQYAPVAASSVSAEESGSQQNPVPVDAPSDHGLYSFQFNK 407
>ref|XP_865045.1| PREDICTED: similar to ELAV-like 2 isoform 3 isoform 2 [Canis
familiaris].
Length = 346
Score = 106 bits (264), Expect = 7e-23
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 210
Query: 759 ---------QNPNKYIPNG----------RPWHREGEVRLAGMTLTYDPTT 854
Q+PN+ P P +G LAG+ + P T
Sbjct: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,089,041
Number of extensions: 1519635
Number of successful extensions: 6994
Number of sequences better than 1.0e-05: 112
Number of HSP's gapped: 6568
Number of HSP's successfully gapped: 207
Length of query: 501
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 394
Effective length of database: 15,307,552
Effective search space: 6031175488
Effective search space used: 6031175488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058520.1| RNA-binding motif, single-stranded-interacting ... 689 0.0
Alignment gi|NP_002888.1| RNA-binding motif, single-stranded-interacting ... 679 0.0
Alignment gi|NP_055298.2| RNA-binding motif, single-stranded-interacting ... 521 e-148
Alignment gi|NP_001171182.1| RNA-binding motif, single-stranded-interacti... 521 e-148
Alignment gi|NP_001171183.1| RNA-binding motif, single-stranded-interacti... 521 e-148
Alignment gi|NP_001003793.1| RNA-binding motif, single-stranded-interacti... 511 e-145
Alignment gi|NP_002889.1| RNA-binding motif, single-stranded-interacting ... 508 e-144
Alignment gi|NP_001003792.1| RNA-binding motif, single-stranded-interacti... 481 e-136
Alignment gi|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]. 106 6e-23
Alignment gi|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]. 106 6e-23
>ref|NP_058520.1| RNA-binding motif, single-stranded-interacting protein 1 isoform a
[Homo sapiens].
Length = 406
Score = 689 bits (1778), Expect = 0.0
Identities = 346/406 (85%), Positives = 348/406 (85%)
Frame = +3
Query: 66 MGKVWKXXXXXXXXXXXXXXXXXXKQSLVXXXXXXXXXXXXXXXXXXXXXXXXXGWDQLS 245
MGKVWK KQSLV GWDQLS
Sbjct: 1 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 60
Query: 246 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXX 425
KTNLYIRGLPP+TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 61 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 426 XXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 605
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
Sbjct: 121 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 180
Query: 606 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 785
RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
Sbjct: 181 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 240
Query: 786 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 965
GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
Sbjct: 241 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 300
Query: 966 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 1145
VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
Sbjct: 301 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 360
Query: 1146 AMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
AMQGAYLPQY H+QT AVPVEEASGQQQVAVETSNDHSPYTFQPNK
Sbjct: 361 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK 406
>ref|NP_002888.1| RNA-binding motif, single-stranded-interacting protein 1 isoform c
[Homo sapiens].
Length = 403
Score = 679 bits (1751), Expect = 0.0
Identities = 343/406 (84%), Positives = 345/406 (84%)
Frame = +3
Query: 66 MGKVWKXXXXXXXXXXXXXXXXXXKQSLVXXXXXXXXXXXXXXXXXXXXXXXXXGWDQLS 245
MGKVWK KQSLV GWDQLS
Sbjct: 1 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 60
Query: 246 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXX 425
KTNLYIRGLPP+TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 61 KTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAV 120
Query: 426 XXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 605
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS
Sbjct: 121 SALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 180
Query: 606 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 785
RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
Sbjct: 181 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 240
Query: 786 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 965
GRPWHREGE AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ
Sbjct: 241 GRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 297
Query: 966 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 1145
VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
Sbjct: 298 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 357
Query: 1146 AMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
AMQGAYLPQY H+QT AVPVEEASGQQQVAVETSNDHSPYTFQPNK
Sbjct: 358 AMQGAYLPQYAHMQTTAVPVEEASGQQQVAVETSNDHSPYTFQPNK 403
>ref|NP_055298.2| RNA-binding motif, single-stranded-interacting protein 3 isoform 2
[Homo sapiens].
Length = 420
Score = 521 bits (1342), Expect = e-148
Identities = 265/369 (71%), Positives = 298/369 (80%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGTY
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTY 351
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDHS 1259
M A + MQG Y+PQYT V AV +E + SG QQQ+AV+TSN+H+
Sbjct: 352 MTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHA 411
Query: 1260 P-YTFQPNK 1283
P Y++Q +K
Sbjct: 412 PAYSYQQSK 420
>ref|NP_001171182.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 5
[Homo sapiens].
Length = 421
Score = 521 bits (1342), Expect = e-148
Identities = 265/369 (71%), Positives = 298/369 (80%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGTY
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTY 351
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDHS 1259
M A + MQG Y+PQYT V AV +E + SG QQQ+AV+TSN+H+
Sbjct: 352 MTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQIAVDTSNEHA 411
Query: 1260 P-YTFQPNK 1283
P Y++Q +K
Sbjct: 412 PAYSYQQSK 420
>ref|NP_001171183.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 4
[Homo sapiens].
Length = 433
Score = 521 bits (1341), Expect = e-148
Identities = 267/379 (70%), Positives = 300/379 (79%), Gaps = 29/379 (7%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEV----------RLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQT 923
Y NGRPW REGEV R AGM LTYDP TAAIQNGFY SPYSIATNRMI QT
Sbjct: 236 YTQNGRPWPREGEVLRGRTVPRQNREAGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQT 294
Query: 924 SITPYI-ASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMS 1100
SITP+I ASPVS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+
Sbjct: 295 SITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMN 354
Query: 1101 HLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQ 1229
HLSLG+TGTYM A + MQG Y+PQYT V AV +E + SG QQQ
Sbjct: 355 HLSLGTTGTYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDTSGQQQQ 414
Query: 1230 VAVETSNDHSP-YTFQPNK 1283
+AV+TSN+H+P Y++Q +K
Sbjct: 415 IAVDTSNEHAPAYSYQQSK 433
>ref|NP_001003793.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 1
[Homo sapiens].
Length = 437
Score = 511 bits (1315), Expect = e-145
Identities = 265/385 (68%), Positives = 298/385 (77%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 56 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 115
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 116 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 175
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 176 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 235
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 236 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 291
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQVQS SWM PY++Q GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 292 VSTYQVQSTSWMPHPPYVMQPTGAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTI 351
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E +
Sbjct: 352 QSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDT 411
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+TSN+H+P Y++Q +K
Sbjct: 412 SGQQQQIAVDTSNEHAPAYSYQQSK 436
>ref|NP_002889.1| RNA-binding motif, single-stranded-interacting protein 2 [Homo
sapiens].
Length = 407
Score = 508 bits (1307), Expect = e-144
Identities = 254/362 (70%), Positives = 293/362 (80%), Gaps = 10/362 (2%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 49 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 108
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 109 AAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 168
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SGTSRGVGFARMESTEKCEA+I HFNGK+IKTPPGV AP++PLLCKFADGG KKRQN
Sbjct: 169 DTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKRQNQ 228
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
K++ NGR W R ++ + M LTYDPTT A+QNGFYP+PY+I NRM+ Q++++PY++S
Sbjct: 229 GKFVQNGRAWPRNADMGV--MALTYDPTT-ALQNGFYPAPYNITPNRMLAQSALSPYLSS 285
Query: 948 PVSAY---------QVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMS 1100
PVS+Y QV +PSWM Y++Q G+VLTP M+H +SLQPASM+ PL QQ+
Sbjct: 286 PVSSYQRVTQTSPLQVPNPSWMHHHSYLMQPSGSVLTPGMDHPISLQPASMMGPLTQQLG 345
Query: 1101 HLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQ-QVAVETSNDHSPYTFQP 1277
HLSL STGTYMP +AMQGAY+ QYT V +++V VEE+SGQQ QVAV+ ++H Y+FQ
Sbjct: 346 HLSLSSTGTYMPTAAAMQGAYISQYTPVPSSSVSVEESSGQQNQVAVDAPSEHGVYSFQF 405
Query: 1278 NK 1283
NK
Sbjct: 406 NK 407
>ref|NP_001003792.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 3
[Homo sapiens].
Length = 419
Score = 481 bits (1238), Expect = e-136
Identities = 256/385 (66%), Positives = 287/385 (74%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 55 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 114
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 115 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 174
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQN +K
Sbjct: 175 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQNQSK 234
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
Y NGRPW REGE AGM LTYDP TAAIQNGFY SPYSIATNRMI QTSITP+I ASP
Sbjct: 235 YTQNGRPWPREGE---AGMALTYDP-TAAIQNGFYSSPYSIATNRMIPQTSITPFIAASP 290
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQ GAV+TP+M+H MS+QPA+M+ PL QQM+HLSLG+TGT
Sbjct: 291 VSTYQ-----------------GAVITPTMDHPMSMQPANMMGPLTQQMNHLSLGTTGTI 333
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E +
Sbjct: 334 QSQDRIMILHQLLCQYMTAAAPMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDT 393
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+TSN+H+P Y++Q +K
Sbjct: 394 SGQQQQIAVDTSNEHAPAYSYQQSK 418
>ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens].
Length = 346
Score = 106 bits (264), Expect = 6e-23
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 210
Query: 759 ---------QNPNKYIPNG----------RPWHREGEVRLAGMTLTYDPTT 854
Q+PN+ P P +G LAG+ + P T
Sbjct: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 261
>ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens].
Length = 346
Score = 106 bits (264), Expect = 6e-23
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 210
Query: 759 ---------QNPNKYIPNG----------RPWHREGEVRLAGMTLTYDPTT 854
Q+PN+ P P +G LAG+ + P T
Sbjct: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,347,651
Number of extensions: 1510704
Number of successful extensions: 6172
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 6021
Number of HSP's successfully gapped: 84
Length of query: 501
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 394
Effective length of database: 14,770,016
Effective search space: 5819386304
Effective search space used: 5819386304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064692.2| RNA-binding motif, single-stranded-interacting ... 669 0.0
Alignment gi|NP_001135403.1| RNA-binding motif, single-stranded-interacti... 663 0.0
Alignment gi|NP_001135404.1| RNA-binding motif, single-stranded-interacti... 653 0.0
Alignment gi|NP_001165593.1| RNA-binding motif, single-stranded-interacti... 499 e-141
Alignment gi|NP_001165594.1| RNA-binding motif, single-stranded-interacti... 489 e-138
Alignment gi|NP_001165597.1| RNA-binding motif, single-stranded-interacti... 487 e-138
Alignment gi|NP_001165595.1| RNA-binding motif, single-stranded-interacti... 477 e-134
Alignment gi|NP_001034169.1| RNA-binding motif, single-stranded-interacti... 477 e-134
Alignment gi|NP_062685.2| RNA-binding motif, single-stranded-interacting ... 477 e-134
Alignment gi|NP_001165592.1| RNA-binding motif, single-stranded-interacti... 462 e-130
>ref|NP_064692.2| RNA-binding motif, single-stranded-interacting protein 1 isoform 3
[Mus musculus].
Length = 403
Score = 669 bits (1726), Expect = 0.0
Identities = 337/406 (83%), Positives = 342/406 (84%)
Frame = +3
Query: 66 MGKVWKXXXXXXXXXXXXXXXXXXKQSLVXXXXXXXXXXXXXXXXXXXXXXXXXGWDQLS 245
MGKVWK KQSLV GWDQLS
Sbjct: 1 MGKVWKQQMYPQYATYYYPQYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLS 60
Query: 246 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXX 425
KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK TNKCKGYGFVDFDSP
Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120
Query: 426 XXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 605
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR+LRDSSG S
Sbjct: 121 SALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGAS 180
Query: 606 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 785
RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN
Sbjct: 181 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPN 240
Query: 786 GRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQ 965
GRPW R+GE AGMTLTYDPTTAA+ NGFYPSPYSIATNRMITQTS+TPYIASPVSAYQ
Sbjct: 241 GRPWPRDGE---AGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIASPVSAYQ 297
Query: 966 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 1145
VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS
Sbjct: 298 VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATS 357
Query: 1146 AMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
AMQGAYLPQYTH+QTAAVPVEEASGQQQVAVETSNDHSPYTF PNK
Sbjct: 358 AMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFPPNK 403
>ref|NP_001135403.1| RNA-binding motif, single-stranded-interacting protein 1 isoform 2
[Mus musculus].
Length = 401
Score = 663 bits (1711), Expect = 0.0
Identities = 326/352 (92%), Positives = 331/352 (94%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK TNKCKGYGFVDFDSP
Sbjct: 53 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPA 112
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR+LR
Sbjct: 113 AAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLR 172
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
DSSG SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP
Sbjct: 173 DSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 232
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
NKYIPNGRPW R+GE AGMTLTYDPTTAA+ NGFYPSPYSIATNRMITQTS+TPYIAS
Sbjct: 233 NKYIPNGRPWPRDGE---AGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIAS 289
Query: 948 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 1127
PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT
Sbjct: 290 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 349
Query: 1128 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
YMPATSAMQGAYLPQYTH+QTAAVPVEEASGQQQVAVETSNDHSPYTF PNK
Sbjct: 350 YMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHSPYTFPPNK 401
>ref|NP_001135404.1| RNA-binding motif, single-stranded-interacting protein 1 isoform 1
[Mus musculus].
Length = 417
Score = 653 bits (1684), Expect = 0.0
Identities = 326/368 (88%), Positives = 331/368 (89%), Gaps = 16/368 (4%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDK TNKCKGYGFVDFDSP
Sbjct: 53 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPA 112
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR+LR
Sbjct: 113 AAQKAVSALKANGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLR 172
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
DSSG SRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP
Sbjct: 173 DSSGASRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 232
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
NKYIPNGRPW R+GE AGMTLTYDPTTAA+ NGFYPSPYSIATNRMITQTS+TPYIAS
Sbjct: 233 NKYIPNGRPWPRDGE---AGMTLTYDPTTAALHNGFYPSPYSIATNRMITQTSLTPYIAS 289
Query: 948 PVSAYQ----------------VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS 1079
PVSAYQ VQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS
Sbjct: 290 PVSAYQVAKETRENKYRGSAIKVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMIS 349
Query: 1080 PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHS 1259
PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTH+QTAAVPVEEASGQQQVAVETSNDHS
Sbjct: 350 PLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHMQTAAVPVEEASGQQQVAVETSNDHS 409
Query: 1260 PYTFQPNK 1283
PYTF PNK
Sbjct: 410 PYTFPPNK 417
>ref|NP_001165593.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 2
[Mus musculus].
Length = 415
Score = 499 bits (1286), Expect = e-141
Identities = 256/369 (69%), Positives = 294/369 (79%), Gaps = 19/369 (5%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 111 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 170
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQ +K
Sbjct: 171 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSK 230
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
+ NGRPW REGE AGM LTYDP TAA+QNGFY SPYS+ATNRMI QTSITP+I ASP
Sbjct: 231 HTQNGRPWPREGE---AGMALTYDP-TAALQNGFYSSPYSLATNRMIPQTSITPFIAASP 286
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SW PYI+Q GAV+TP+++H MS+QP +++ PL QQM+HLSLG+ GTY
Sbjct: 287 VSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTY 346
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVE----------------EASG-QQQVAVETSNDHS 1259
M A + MQG Y+PQYT V AV +E ++SG QQQ+AV+T ++H+
Sbjct: 347 MTA-APMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDSSGQQQQLAVDTPSEHA 405
Query: 1260 P-YTFQPNK 1283
P Y+FQ +K
Sbjct: 406 PAYSFQQSK 414
>ref|NP_001165594.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 1
[Mus musculus].
Length = 431
Score = 489 bits (1259), Expect = e-138
Identities = 256/385 (66%), Positives = 294/385 (76%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 111 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 170
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQ +K
Sbjct: 171 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSK 230
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
+ NGRPW REGE AGM LTYDP TAA+QNGFY SPYS+ATNRMI QTSITP+I ASP
Sbjct: 231 HTQNGRPWPREGE---AGMALTYDP-TAALQNGFYSSPYSLATNRMIPQTSITPFIAASP 286
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQVQS SW PYI+Q GAV+TP+++H MS+QP +++ PL QQM+HLSLG+ GT
Sbjct: 287 VSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTI 346
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E ++
Sbjct: 347 QSQDRIMVLHQLLCQYMTA-APMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDS 405
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+T ++H+P Y+FQ +K
Sbjct: 406 SGQQQQLAVDTPSEHAPAYSFQQSK 430
>ref|NP_001165597.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 6
[Mus musculus].
Length = 386
Score = 487 bits (1254), Expect = e-138
Identities = 243/336 (72%), Positives = 274/336 (81%), Gaps = 1/336 (0%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 111 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 170
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQ +K
Sbjct: 171 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSK 230
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
+ NGRPW REGE AGM LTYDP TAA+QNGFY SPYS+ATNRMI QTSITP+I ASP
Sbjct: 231 HTQNGRPWPREGE---AGMALTYDP-TAALQNGFYSSPYSLATNRMIPQTSITPFIAASP 286
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTY 1130
VS YQVQS SW PYI+Q GAV+TP+++H MS+QP +++ PL QQM+HLSLG+ GTY
Sbjct: 287 VSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTY 346
Query: 1131 MPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAV 1238
M A + MQG Y+PQYT V AV +E + V +
Sbjct: 347 MTA-APMQGTYIPQYTPVPPTAVSIETIDRSEDVCL 381
>ref|NP_001165595.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 5
[Mus musculus].
Length = 402
Score = 477 bits (1227), Expect = e-134
Identities = 243/352 (69%), Positives = 274/352 (77%), Gaps = 17/352 (4%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 111 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 170
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQ +K
Sbjct: 171 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSK 230
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
+ NGRPW REGE AGM LTYDP TAA+QNGFY SPYS+ATNRMI QTSITP+I ASP
Sbjct: 231 HTQNGRPWPREGE---AGMALTYDP-TAALQNGFYSSPYSLATNRMIPQTSITPFIAASP 286
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQVQS SW PYI+Q GAV+TP+++H MS+QP +++ PL QQM+HLSLG+ GT
Sbjct: 287 VSTYQVQSTSWTPHLPYIMQPTGAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTI 346
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAV 1238
YM A + MQG Y+PQYT V AV +E + V +
Sbjct: 347 QSQDRIMVLHQLLCQYMTA-APMQGTYIPQYTPVPPTAVSIETIDRSEDVCL 397
>ref|NP_001034169.1| RNA-binding motif, single-stranded-interacting protein 2 isoform b
[Mus musculus].
Length = 355
Score = 477 bits (1227), Expect = e-134
Identities = 242/353 (68%), Positives = 278/353 (78%), Gaps = 1/353 (0%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 23 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 82
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 83 SAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 142
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SG SRGVGFARMESTEKCEA+I HFNGK+IKTPPGV+AP++PLLCKFADGG KKRQ+
Sbjct: 143 DTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQ 202
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
+Y+ NGR W R G+ + GM LTYDP TAA+QNGFY +PYSIA +RM+ Q+++ PY+ S
Sbjct: 203 GRYVQNGRAWPRNGD--MGGMALTYDP-TAALQNGFYAAPYSIAHSRMLAQSALAPYLPS 259
Query: 948 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 1127
PVS+YQ G+VLTP M+H +SLQPASM+ PL QQ+ HLSL S GT
Sbjct: 260 PVSSYQ-----------------GSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGT 302
Query: 1128 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQ-QVAVETSNDHSPYTFQPNK 1283
+MPA +AM GAY+ QY V +++V EE++GQQ Q+AVE +DH Y FQ +K
Sbjct: 303 FMPAAAAMHGAYISQYPAVPSSSVSAEESNGQQNQLAVEPPSDHGVYPFQFSK 355
>ref|NP_062685.2| RNA-binding motif, single-stranded-interacting protein 2 isoform a
[Mus musculus].
Length = 383
Score = 477 bits (1227), Expect = e-134
Identities = 242/353 (68%), Positives = 278/353 (78%), Gaps = 1/353 (0%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
G DQLSKTNLYIRGL P TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 51 GNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS 110
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELE MLKPFGQVISTRILR
Sbjct: 111 SAQKAVTALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILR 170
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
D+SG SRGVGFARMESTEKCEA+I HFNGK+IKTPPGV+AP++PLLCKFADGG KKRQ+
Sbjct: 171 DTSGASRGVGFARMESTEKCEAIITHFNGKYIKTPPGVAAPSDPLLCKFADGGPKKRQSQ 230
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
+Y+ NGR W R G+ + GM LTYDP TAA+QNGFY +PYSIA +RM+ Q+++ PY+ S
Sbjct: 231 GRYVQNGRAWPRNGD--MGGMALTYDP-TAALQNGFYAAPYSIAHSRMLAQSALAPYLPS 287
Query: 948 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 1127
PVS+YQ G+VLTP M+H +SLQPASM+ PL QQ+ HLSL S GT
Sbjct: 288 PVSSYQ-----------------GSVLTPGMDHPLSLQPASMMGPLTQQLGHLSLNSLGT 330
Query: 1128 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQ-QVAVETSNDHSPYTFQPNK 1283
+MPA +AM GAY+ QY V +++V EE++GQQ Q+AVE +DH Y FQ +K
Sbjct: 331 FMPAAAAMHGAYISQYPAVPSSSVSAEESNGQQNQLAVEPPSDHGVYPFQFSK 383
>ref|NP_001165592.1| RNA-binding motif, single-stranded-interacting protein 3 isoform 4
[Mus musculus].
Length = 463
Score = 462 bits (1188), Expect = e-130
Identities = 247/385 (64%), Positives = 284/385 (73%), Gaps = 35/385 (9%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
+QLSKTNLYIRGLPP TTDQDL+KLCQPYGKIVSTKAILDK TN+CKGYGFVDFDSP
Sbjct: 100 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 159
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS 593
GVQAQMAKQQEQDPTNLYISNLP+SMDEQELENMLKPFG VISTRILRD+
Sbjct: 160 QKAVASLKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDA 219
Query: 594 SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNK 773
+G SRGVGFARMESTEKCE VI HFNGK++KTPPG+ AP+EPLLCKFADGGQKKRQ +K
Sbjct: 220 NGVSRGVGFARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFADGGQKKRQGQSK 279
Query: 774 YIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYI-ASP 950
+ NGRPW REGE AGM LTYDP TAA+QNGFY SPYS+ATNRMI QTSITP+I ASP
Sbjct: 280 HTQNGRPWPREGE---AGMALTYDP-TAALQNGFYSSPYSLATNRMIPQTSITPFIAASP 335
Query: 951 VSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT- 1127
VS YQ GAV+TP+++H MS+QP +++ PL QQM+HLSLG+ GT
Sbjct: 336 VSTYQ-----------------GAVITPAVDHPMSMQPTNIVGPLTQQMNHLSLGTAGTI 378
Query: 1128 ---------------YMPATSAMQGAYLPQYTHVQTAAVPVE----------------EA 1214
YM A + MQG Y+PQYT V AV +E ++
Sbjct: 379 QSQDRIMVLHQLLCQYMTA-APMQGTYIPQYTPVPPTAVSIEGVVADTSPQTVAPSSQDS 437
Query: 1215 SG-QQQVAVETSNDHSP-YTFQPNK 1283
SG QQQ+AV+T ++H+P Y+FQ +K
Sbjct: 438 SGQQQQLAVDTPSEHAPAYSFQQSK 462
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,986,733
Number of extensions: 1287618
Number of successful extensions: 5482
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 5314
Number of HSP's successfully gapped: 66
Length of query: 501
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 395
Effective length of database: 12,433,743
Effective search space: 4911328485
Effective search space used: 4911328485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133475.2| PREDICTED: RNA-binding motif, single-strande... 679 0.0
Alignment gi|XP_003126323.2| PREDICTED: RNA-binding motif, single-strande... 453 e-127
Alignment gi|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Su... 106 4e-23
Alignment gi|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Su... 104 1e-22
Alignment gi|NP_001182263.1| ELAV-like protein 1 [Sus scrofa]. 102 7e-22
Alignment gi|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like pr... 96 5e-20
Alignment gi|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [... 80 4e-15
Alignment gi|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [... 69 7e-12
Alignment gi|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-l... 69 7e-12
Alignment gi|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-l... 68 1e-11
>ref|XP_003133475.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein
1-like [Sus scrofa].
Length = 401
Score = 679 bits (1753), Expect = 0.0
Identities = 336/352 (95%), Positives = 336/352 (95%)
Frame = +3
Query: 228 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPX 407
GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP
Sbjct: 53 GWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPA 112
Query: 408 XXXXXXXXXXXXGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 587
GVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR
Sbjct: 113 AAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR 172
Query: 588 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 767
DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP
Sbjct: 173 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQNP 232
Query: 768 NKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 947
NKYIPNGRPWHREGE AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS
Sbjct: 233 NKYIPNGRPWHREGE---AGMTLTYDPTTAAIQNGFYPSPYSIATNRMITQTSITPYIAS 289
Query: 948 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 1127
PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT
Sbjct: 290 PVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGT 349
Query: 1128 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 1283
YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK
Sbjct: 350 YMPATSAMQGAYLPQYTHVQTAAVPVEEASGQQQVAVETSNDHSPYTFQPNK 401
>ref|XP_003126323.2| PREDICTED: RNA-binding motif, single-stranded-interacting protein 2
isoform 1 [Sus scrofa].
Length = 338
Score = 453 bits (1166), Expect = e-127
Identities = 225/332 (67%), Positives = 265/332 (79%), Gaps = 10/332 (3%)
Frame = +3
Query: 318 YGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXXXXXXGVQAQMAKQQEQDPTNLY 497
YGKIVSTKAILDKTTNKCKGYGFVDFDSP GVQAQMAKQQEQDPTNLY
Sbjct: 10 YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPTNLY 69
Query: 498 ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 677
ISNLPLSMDEQELE MLKPFGQVISTRILRD+SGTSRGVGFARMESTEKCEA+I HFNGK
Sbjct: 70 ISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 129
Query: 678 FIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPTTA 857
+IKTPPGV AP++PLLCKFADGG KKRQN K++ NGR W R G+ + G+ LTYDPTT
Sbjct: 130 YIKTPPGVPAPSDPLLCKFADGGPKKRQNQGKFVQNGRAWPRNGD--MGGLALTYDPTT- 186
Query: 858 AIQNGFYPSPYSIATNRMITQTSITPYIASPVSAY---------QVQSPSWMQPQPYILQ 1010
A+QNGFYP+PY+I NRM++Q++++PY+ SPVS+Y QV +PSWM Q Y++Q
Sbjct: 187 ALQNGFYPAPYNITPNRMLSQSALSPYLPSPVSSYQRVTQTSPLQVPNPSWMHHQSYLMQ 246
Query: 1011 HPGAVLTPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYTHVQT 1190
G+VLTP M+H +SLQPASM+ PL QQ+ HLSL S GTYMPA +A+QGAY+ Q+T V +
Sbjct: 247 PSGSVLTPGMDHPISLQPASMMGPLTQQLGHLSLSSMGTYMPAAAAVQGAYISQFTPVPS 306
Query: 1191 AAVPVEEASGQQ-QVAVETSNDHSPYTFQPNK 1283
++V +EE+ GQQ QV E +DH Y+FQ NK
Sbjct: 307 SSVSLEESGGQQSQVTAEAPSDHGVYSFQFNK 338
>ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa].
Length = 346
Score = 106 bits (264), Expect = 4e-23
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 27/231 (11%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 210
Query: 759 ---------QNPNKYIPNG----------RPWHREGEVRLAGMTLTYDPTT 854
Q+PN+ P P +G LAG+ + P T
Sbjct: 211 NQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 261
>ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa].
Length = 359
Score = 104 bits (260), Expect = 1e-22
Identities = 69/197 (35%), Positives = 99/197 (50%), Gaps = 17/197 (8%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T ++L L G+I S K + DK T + GYGFV++ P
Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++ELE + +G++I++RI
Sbjct: 97 INTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRI 156
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKR 758
L D +G SRGVGF R + + E I NG + PPG TEP+ KFA+ +K
Sbjct: 157 LVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG---QKPPGA---TEPITVKFANNPSQKT 210
Query: 759 ---------QNPNKYIP 782
Q+PN+ P
Sbjct: 211 NQAILSQLYQSPNRRYP 227
>ref|NP_001182263.1| ELAV-like protein 1 [Sus scrofa].
Length = 326
Score = 102 bits (253), Expect = 7e-22
Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 8/188 (4%)
Frame = +3
Query: 234 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXX 413
D + +TNL + LP N T ++L L G+I S K I DK GYGFV++ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 414 XXXXXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVIS 572
+Q++ K P+ NLYIS LP +M ++++E+M PFG++I+
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIIN 134
Query: 573 TRILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQ 749
+R+L D ++G SRGV F R + + E I FNG PPG S EP+ KFA
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG---HKPPGSS---EPITVKFA---- 184
Query: 750 KKRQNPNK 773
NPN+
Sbjct: 185 ---ANPNQ 189
>ref|XP_003123218.1| PREDICTED: LOW QUALITY PROTEIN: ELAV-like protein 3-like [Sus
scrofa].
Length = 359
Score = 95.9 bits (237), Expect = 5e-20
Identities = 61/179 (34%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Frame = +3
Query: 243 SKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXX 422
SKTNL + LP N T + L G I S K + DK T + GYGFV++ P
Sbjct: 36 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 95
Query: 423 XXXXXXXGVQAQMAKQQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRI 581
+Q + K P+ NLY+S LP +M ++E+E + +G++I++RI
Sbjct: 96 INTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRI 155
Query: 582 LRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKK 755
L D +G SRGVGF R + + E I NG + P G + EP+ KFA+ +K
Sbjct: 156 LVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG---QKPLGAA---EPITVKFANNPSQK 208
>ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa].
Length = 636
Score = 79.7 bits (195), Expect = 4e-15
Identities = 89/374 (23%), Positives = 147/374 (39%), Gaps = 38/374 (10%)
Frame = +3
Query: 249 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDF----------D 398
TN+YI+ + D+ L L +G +S K + D++ K KG+GFV F D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 399 SPXXXXXXXXXXXXXGVQAQMAKQQE---------QDP------TNLYISNLPLSMDEQE 533
Q ++ +Q E QD NLY+ NL +D++
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 534 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 713
L PFG + S +++ + G S+G GF S E+ + NG+ + T
Sbjct: 310 LRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------AT 360
Query: 714 EPLLCKFADGGQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPY 890
+PL A ++++ + N+Y+ R+A + +P + N + P+P
Sbjct: 361 KPLYVALAQRKEERQAHLTNQYMQ-----------RMASVRAVPNP----VINPYQPAPP 405
Query: 891 SIATNRMITQTSITPYIASPVSAYQVQ-SPSW----MQPQPYILQHPGAVLTPSMEHTMS 1055
S I QT P Q++ SP W +P P+ PGA+ + S
Sbjct: 406 SGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPF-QNMPGAIRPAAPRPPFS 464
Query: 1056 -LQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGA------YLPQYTHVQTAAVPVEEA 1214
++PAS P ++ ST T P +A A +PQY + P +
Sbjct: 465 TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL 524
Query: 1215 SGQQQVAVETSNDH 1256
+ Q QV ++ H
Sbjct: 525 NAQPQVTMQQPAVH 538
Score = 70.1 bits (170), Expect = 3e-12
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 9/187 (4%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
+LY+ L P+ T+ L + P G I+S + D T + GY +V+F P
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 432 XXXXGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 584
++ + + ++DP+ N++I NL S+D + L + FG ++S +++
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 585 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQN 764
D +G S+G GF E+ E E I NG + + + A+ G + ++
Sbjct: 132 CDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 765 PNKYIPN 785
N YI N
Sbjct: 191 TNVYIKN 197
>ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 [Sus scrofa].
Length = 644
Score = 68.9 bits (167), Expect = 7e-12
Identities = 63/273 (23%), Positives = 108/273 (39%), Gaps = 26/273 (9%)
Frame = +3
Query: 249 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXX 428
TN+YI+ D++L +L +GK +S K + D + K KG+GFV ++
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249
Query: 429 XXXXXGV----------------QAQMAKQQEQ---------DPTNLYISNLPLSMDEQE 533
+ QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 534 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 713
L PFG + S +++ + G S+G GF S E+ + NG+ + +
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 714 EPLLCKFADGGQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPY 890
+PL A ++++ + N+Y+ R+AGM AI N F P+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ-----------RVAGMRAL---PANAILNQFQPAAG 406
Query: 891 SIATNRMITQTSITPYIASPVSAYQVQSPSWMQ 989
+ PY A +P W Q
Sbjct: 407 GYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQ 439
Score = 66.2 bits (160), Expect = 4e-11
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
N++I+ L + ++ L +G I+S K + D+ N KGY FV F++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 432 XXXXGVQAQMA--------KQQE-------QDPTNLYISNLPLSMDEQELENMLKPFGQV 566
+ + K++E ++ TN+YI N +D++ L+ + FG+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 567 ISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 683
+S +++RD SG S+G GF E E + NGK I
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
+LY+ L + T+ L + P G ++S + D T + GY +V+F P
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 432 XXXXGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 584
++ + + ++DP+ N++I NL S+D + L + FG ++S +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 585 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQN 764
D +G S+G F E+ E + I NG + + + A+ G K ++
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 765 PNKYIPN 785
N YI N
Sbjct: 191 TNVYIKN 197
>ref|XP_003127859.2| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa].
Length = 656
Score = 68.9 bits (167), Expect = 7e-12
Identities = 63/273 (23%), Positives = 108/273 (39%), Gaps = 26/273 (9%)
Frame = +3
Query: 249 TNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXX 428
TN+YI+ D++L +L +GK +S K + D + K KG+GFV ++
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249
Query: 429 XXXXXGV----------------QAQMAKQQEQ---------DPTNLYISNLPLSMDEQE 533
+ QA++ ++ EQ NLYI NL ++D+++
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 534 LENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 713
L PFG + S +++ + G S+G GF S E+ + NG+ + +
Sbjct: 310 LRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIV--------GS 360
Query: 714 EPLLCKFADGGQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGFYPSPY 890
+PL A ++++ + N+Y+ R+AGM AI N F P+
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ-----------RVAGMRAL---PANAILNQFQPAAG 406
Query: 891 SIATNRMITQTSITPYIASPVSAYQVQSPSWMQ 989
+ PY A +P W Q
Sbjct: 407 GYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQ 439
Score = 66.2 bits (160), Expect = 4e-11
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
N++I+ L + ++ L +G I+S K + D+ N KGY FV F++
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEK 157
Query: 432 XXXXGVQAQMA--------KQQE-------QDPTNLYISNLPLSMDEQELENMLKPFGQV 566
+ + K++E ++ TN+YI N +D++ L+ + FG+
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 567 ISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 683
+S +++RD SG S+G GF E E + NGK I
Sbjct: 218 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEI 256
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
+LY+ L + T+ L + P G ++S + D T + GY +V+F P
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 432 XXXXGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 584
++ + + ++DP+ N++I NL S+D + L + FG ++S +++
Sbjct: 72 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 585 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADGGQKKRQN 764
D +G S+G F E+ E + I NG + + + A+ G K ++
Sbjct: 132 CDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 765 PNKYIPN 785
N YI N
Sbjct: 191 TNVYIKN 197
>ref|XP_001927442.1| PREDICTED: polyadenylate-binding protein 1-like [Sus scrofa].
Length = 610
Score = 68.2 bits (165), Expect = 1e-11
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
N++I+ L + ++ L +G I+S K + D + +G+GFV F++
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRT 157
Query: 432 XXXXGVQ------AQMAKQQEQDP---------TNLYISNLPLSMDEQELENMLKPFGQV 566
+ ++E++ TN+Y+ NL + +DE+ L+++ FG++
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKI 217
Query: 567 ISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGK 677
+S +++RD SG SRG GF E E + + NGK
Sbjct: 218 LSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGK 254
Score = 66.2 bits (160), Expect = 4e-11
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Frame = +3
Query: 240 LSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXX 419
L TN+Y++ L + ++ L L +GKI+S K + D + + +G+GFV+F+
Sbjct: 188 LEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHS-RGFGFVNFEKHEDAQK 246
Query: 420 XXXXXXXXGVQAQMA-------------------KQQEQDP------TNLYISNLPLSMD 524
V ++ +Q +QD NLY+ NL S+D
Sbjct: 247 AVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSID 306
Query: 525 EQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 695
+++L P+G + S +++ + G S+G GF S E+ + NG+ + T P
Sbjct: 307 DEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Frame = +3
Query: 252 NLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPXXXXXXXXX 431
+LY+ L P+ T+ L + P G I+S + D T + GY +++F P
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 432 XXXXGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQELENMLKPFGQVISTRIL 584
++ Q + ++DP N++I NL S+D + L + FG ++S +++
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKVV 131
Query: 585 RDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 683
D G SRG GF E+ E + I NG +
Sbjct: 132 CDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLL 163
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,947,649
Number of extensions: 950497
Number of successful extensions: 3817
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 3753
Number of HSP's successfully gapped: 30
Length of query: 501
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,779,541
Effective search space: 3494257318
Effective search space used: 3494257318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002640
(1505 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 319 2e-84
gb|JH118654.1| Sus scrofa unplaced genomic scaffold ChrUScaf1492 86 6e-14
Sscrofa_Chr16 86 6e-14
>Sscrofa_Chr15
|| Length = 157681621
Score = 319 bits (161), Expect = 2e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 466 agcaacaggaacaagaccctaccaacttgtatatttctaatttgccactctccatggatg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74447294 agcaacaggaacaagaccctaccaacttgtatatttctaatttgccactctccatggatg 74447235
Query: 526 agcaagagcttgaaaacatgctaaaaccatttggacaagttatttctacacggatactac 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74447234 agcaagagcttgaaaacatgctaaaaccatttggacaagttatttctacacggatactac 74447175
Query: 586 gtgattccagtggaacaagtcgtggtgttggctttgctagg 626
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 74447174 gtgattccagtggaacaagtcgtggtgttggctttgctagg 74447134
Score = 305 bits (154), Expect = 4e-80
Identities = 170/178 (95%)
Strand = Plus / Minus
Query: 139 agcagtccctggtcccagcgcccccgatggnnnnnnnnagccccagcaccaccagcagta 198
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 74512693 agcagtccctggtcccagcgcccccgatggccccccccagccccagcaccaccagcagta 74512634
Query: 199 acaacaacagtagcagcagtagcaactcaggatgggatcagctcagcaaaacgaacctct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74512633 acaacaacagtagcagcagtagcaactcaggatgggatcagctcagcaaaacgaacctct 74512574
Query: 259 acattcgagggctgcctcccaacaccacagaccaggacctggtaaagctgtgtcaacc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74512573 acattcgagggctgcctcccaacaccacagaccaggacctggtaaagctgtgtcaacc 74512516
Score = 305 bits (154), Expect = 4e-80
Identities = 170/178 (95%)
Strand = Plus / Plus
Query: 139 agcagtccctggtcccagcgcccccgatggnnnnnnnnagccccagcaccaccagcagta 198
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 74709360 agcagtccctggtcccagcgcccccgatggccccccccagccccagcaccaccagcagta 74709419
Query: 199 acaacaacagtagcagcagtagcaactcaggatgggatcagctcagcaaaacgaacctct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74709420 acaacaacagtagcagcagtagcaactcaggatgggatcagctcagcaaaacgaacctct 74709479
Query: 259 acattcgagggctgcctcccaacaccacagaccaggacctggtaaagctgtgtcaacc 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74709480 acattcgagggctgcctcccaacaccacagaccaggacctggtaaagctgtgtcaacc 74709537
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 1 agagatcgagacttggaaacctcaaagtgcccgcgaccctgcacggcaggctcccttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74617333 agagatcgagacttggaaacctcaaagtgcccgcgaccctgcacggcaggctcccttcca 74617274
Query: 61 gcttcatgggcaaagtgtggaaacagcagatgtaccctcagtacgccacctactattacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74617273 gcttcatgggcaaagtgtggaaacagcagatgtaccctcagtacgccacctactattacc 74617214
Query: 121 cccagtatcttcaagcgaag 140
||||||||||||||||||||
Sbjct: 74617213 cccagtatcttcaagcgaag 74617194
Score = 268 bits (135), Expect = 8e-69
Identities = 198/216 (91%), Gaps = 3/216 (1%)
Strand = Plus / Minus
Query: 1292 aggtgtacagaaaggtgtttgttcttacatgaagaagggtatgaaggctgaacaatcatg 1351
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74421489 aggtgtacagaagggtgtttgttcttacatgaagaagggtatgaaggctgaacaatcatg 74421430
Query: 1352 gatttttctgatcaattgtgcttttagaaaattat-gacagttttgcacaggttctttga 1410
|||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
Sbjct: 74421429 gatttttctgatcaattgtgcttt-aggaaattattgacagttttgcacaggttcttgaa 74421371
Query: 1411 aacgttattttatatgaaaatcactaaaactatttttgctantagttctataaggtgcat 1470
|||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 74421370 aacgttatttataatgaaatcaactaaaactatttttgctataagttctataaggtgcat 74421311
Query: 1471 aaaa-ccttnnaatcatctagtagctgttcccctga 1505
|||| |||| | |||||||||||||||||||||||
Sbjct: 74421310 aaaacccttaaattcatctagtagctgttcccctga 74421275
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 705 gctcctacagaacccttattgtgtaagtttgcggacgggggacagaagaagagacagaac 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74433174 gctcctacagaacccttattgtgtaagtttgcggacgggggacagaagaagagacagaac 74433115
Query: 765 ccaaacaaatacatccctaatggaagaccctggcacagagaaggagaggtgagacttg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74433114 ccaaacaaatacatccctaatggaagaccctggcacagagaaggagaggtgagacttg 74433057
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 1017 ggtgccgtgttaactccctcgatggagcacaccatgtcactacagcccgcatctatgatc 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74425035 ggtgccgtgttaactccctcgatggagcacaccatgtcactacagcccgcatctatgatc 74424976
Query: 1077 agcccgctggcccagcagatgagtcatctgtcactaggcagcaccggaaca 1127
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74424975 agcccgctggcccagcagatgagtcatctgtcactaggcagcaccggaaca 74424925
Score = 192 bits (97), Expect = 4e-46
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 871 gattttatccttcaccatacagtattgctacaaaccgaatgatcactcagacttccatta 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74431725 gattttatccttcaccatacagtattgctacaaaccgaatgatcactcagacttccatta 74431666
Query: 931 caccctatatcgcatctcctgtatctgcctaccaggt 967
|||||||||||||||||||||||||||||||||||||
Sbjct: 74431665 caccctatatcgcatctcctgtatctgcctaccaggt 74431629
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 374 aggttacggttttgtcgactttgacagtcctgcagctgctcagaaggctgtgtctgccct 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74456846 aggttacggttttgtcgactttgacagtcctgcagctgctcagaaggctgtgtctgccct 74456787
Query: 434 gaaggcaagtggggttcaagctcaaatggccaag 467
||||||||||||||||||||||||||||||||||
Sbjct: 74456786 gaaggcaagtggggttcaagctcaaatggccaag 74456753
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 1207 aggaggcgagtggtcagcagcaggtggctgtagagacgtctaacgaccattctccatata 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74422627 aggaggcgagtggtcagcagcaggtggctgtagagacgtctaacgaccattctccatata 74422568
Query: 1267 cctttcaacccaataagtaactgtgaggt 1295
|||||||||||||||||||||||||||||
Sbjct: 74422567 cctttcaacccaataagtaactgtgaggt 74422539
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 623 taggatggaatcaacagaaaagtgtgaagccgttattggtcattttaatggaaaattcat 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74445181 taggatggaatcaacagaaaagtgtgaagccgttattggtcattttaatggaaaattcat 74445122
Query: 683 taagacaccacccggagtttctg 705
|||||||||||||||||||||||
Sbjct: 74445121 taagacaccacccggagtttctg 74445099
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 1128 tacatgcccgccacgtccgctatgcaaggggcctatttgccacagtacacacatgtgcag 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74423990 tacatgcccgccacgtccgctatgcaaggggcctatttgccacagtacacacatgtgcag 74423931
Query: 1188 acggcagcggttcctgtggagg 1209
||||||||||||||||||||||
Sbjct: 74423930 acggcagcggttcctgtggagg 74423909
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 317 atatgggaaaatcgtttccacgaaggcgattttggataagacaacaaacaaatgcaaagg 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74462062 atatgggaaaatcgtttccacgaaggcgattttggataagacaacaaacaaatgcaaagg 74462003
Query: 377 t 377
|
Sbjct: 74462002 t 74462002
Score = 111 bits (56), Expect = 1e-21
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 962 ccaggtgcaaagtccttcttggatgcaacctcaaccatatatcctccagcaccccg 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74428238 ccaggtgcaaagtccttcttggatgcaacctcaaccatatatcctccagcaccccg 74428183
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 822 gctggaatgacacttacttacgacccaaccacagctgctatacagaacgg 871
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74431900 gctggaatgacacttacttacgacccaaccacagctgctatacagaacgg 74431851
>gb|JH118654.1| Sus scrofa unplaced genomic scaffold ChrUScaf1492
Length = 258211
Score = 85.7 bits (43), Expect = 6e-14
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 288 gaccaggacctggtaaagctgtgtcaaccatatgggaaaatcgtttccacgaaggcgatt 347
||||||||||| || ||| ||||||| ||||||| || | || ||||| ||||| ||
Sbjct: 94114 gaccaggacctagtcaagttgtgtcagtcatatggcaagactgtctccactaaggccata 94055
Query: 348 ttggataagacaacaaacaaatgcaaaggttacggttttgtcgactttgacagtcctgca 407
|||||||||| ||||||||||||||||| || || ||||| ||||||||||||||| ||
Sbjct: 94054 ctggataagaccacaaacaaatgcaaaggctatggctttgtggactttgacagtccttca 93995
Query: 408 gctgctcagaa 418
|| || |||||
Sbjct: 93994 gcagcacagaa 93984
>Sscrofa_Chr16
|| Length = 86898991
Score = 85.7 bits (43), Expect = 6e-14
Identities = 109/131 (83%)
Strand = Plus / Minus
Query: 288 gaccaggacctggtaaagctgtgtcaaccatatgggaaaatcgtttccacgaaggcgatt 347
||||||||||| || ||| ||||||| ||||||| || | || ||||| ||||| ||
Sbjct: 36279269 gaccaggacctagtcaagttgtgtcagtcatatggcaagactgtctccactaaggccata 36279210
Query: 348 ttggataagacaacaaacaaatgcaaaggttacggttttgtcgactttgacagtcctgca 407
|||||||||| ||||||||||||||||| || || ||||| ||||||||||||||| ||
Sbjct: 36279209 ctggataagaccacaaacaaatgcaaaggctatggctttgtggactttgacagtccttca 36279150
Query: 408 gctgctcagaa 418
|| || |||||
Sbjct: 36279149 gcagcacagaa 36279139
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,694,953
Number of extensions: 297
Number of successful extensions: 297
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 19
Length of query: 1505
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1484
Effective length of database: 2,808,413,156
Effective search space: 4167685123504
Effective search space used: 4167685123504
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)