Animal-Genome cDNA 20110601C-002643


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776568.1| polymeric immunoglobulin receptor precursor [Bo...   426   e-119
Alignment   gi|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule...   110   1e-24
Alignment   gi|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule...   110   1e-24
Alignment   gi|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule...    71   1e-12
Alignment   gi|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 ...    71   1e-12
Alignment   gi|XP_002696083.1| PREDICTED: CD300 molecule-like family member...    62   1e-09
Alignment   gi|XP_002684488.1| PREDICTED: CD300 molecule-like family member...    62   1e-09
Alignment   gi|XP_872277.3| PREDICTED: CD300 molecule-like family member g ...    56   4e-08
Alignment   gi|XP_002696260.1| PREDICTED: CD300 molecule-like family member...    56   5e-08
Alignment   gi|XP_001256397.2| PREDICTED: immune receptor expressed on myel...    55   7e-08

>ref|NP_776568.1| polymeric immunoglobulin receptor precursor [Bos taurus].
          Length = 757

 Score =  426 bits (1094), Expect = e-119
 Identities = 208/287 (72%), Positives = 239/287 (83%), Gaps = 4/287 (1%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M+R F ACLLAIFPVVSMKSPIFGP++VSSVEG SVSI+CYYP TSVNRH+RKYWCR GA
Sbjct: 1   MSRLFLACLLAIFPVVSMKSPIFGPEEVSSVEGRSVSIKCYYPPTSVNRHTRKYWCRQGA 60

Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
           +GRCTTLISSEGY+S DY GRANLTNFPE+GTFV+DI HLT  DSG YKCGLGISSRGL+
Sbjct: 61  QGRCTTLISSEGYVSDDYVGRANLTNFPESGTFVVDISHLTHKDSGRYKCGLGISSRGLN 120

Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
           FDVSLEVSQ P Q    HVYT DLG TVTINCPF   N++K KS+ KK  Q    V+DS 
Sbjct: 121 FDVSLEVSQDPAQASHAHVYTIDLGRTVTINCPFTRANSEKRKSLCKKTIQDCFQVVDST 180

Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
           GY++N++ +RAH+SI GTN LVFS VINR++L DAG+Y+CQAGD    ++ + DLQVL+P
Sbjct: 181 GYVSNSYKDRAHISILGTNTLVFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEP 240

Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           EPEL+YGDLR SVTFDC+LG E+ANV KFLCQ KNG  CNVVINTLG
Sbjct: 241 EPELVYGDLRSSVTFDCSLGPEVANVPKFLCQKKNGGACNVVINTLG 287



 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 78/264 (29%), Positives = 121/264 (45%), Gaps = 18/264 (6%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG- 372
           G +V+I C  P T  N   RK  C+   +  C  ++ S GY+S  YK RA+++    N  
Sbjct: 145 GRTVTINC--PFTRANSEKRKSLCKKTIQD-CFQVVDSTGYVSNSYKDRAHISILGTNTL 201

Query: 373 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 552
            F + I  +   D+G+Y C  G  ++    ++ L+V +   ++    VY  DL S+VT +
Sbjct: 202 VFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEPEPEL----VY-GDLRSSVTFD 256

Query: 553 CPFKSENAQKPKSV-YKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 729
           C    E A  PK +  KK G    +VI++ G    +F  R  +S+   N  VFS  I  +
Sbjct: 257 CSLGPEVANVPKFLCQKKNGGACNVVINTLGKKAQDFQGRI-VSVPKDNG-VFSVHITSL 314

Query: 730 QLRDAGIYICQAGDEESSAD-------------LQVLKPEPELIYGDLRGSVTFDCALGQ 870
           +  DAG Y+C A  E    D                +   P ++ G   GSVT  C    
Sbjct: 315 RKEDAGRYVCGAQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNP 374

Query: 871 EMANVAKFLC---QLKNGKTCNVV 933
           + AN AK+ C   + +NG+   +V
Sbjct: 375 KDANSAKYWCHWEEAQNGRCPRLV 398



 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
 Frame = +1

Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRA 345
           P  V  V G SV++ C Y     N  S KYWC       GRC  L+ S G + + Y+GR 
Sbjct: 355 PSVVKGVRGGSVTVSCPYNPKDAN--SAKYWCHWEEAQNGRCPRLVESRGLMKEQYEGRL 412

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
            L   P NGT+ + +  LT  D+G Y C     +R +S  V L+V QG   +      TA
Sbjct: 413 VLLTEPGNGTYTVILNQLTDQDAGFYWCVTDGDTRWIS-TVELKVVQGEPSLKVPKNVTA 471

Query: 526 DLGSTVTINCPF 561
            LG  + ++C F
Sbjct: 472 WLGEPLKLSCHF 483



 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 11/199 (5%)
 Frame = +1

Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFP-ENGTFVMDIGHLTRGDSGLYKCG 432
           K+ C+    G C  +I++ G  ++D++GR  + + P +NG F + I  L + D+G Y CG
Sbjct: 268 KFLCQKKNGGACNVVINTLGKKAQDFQGR--IVSVPKDNGVFSVHITSLRKEDAGRYVCG 325

Query: 433 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPK--SV 594
               G    G       L V++         V     G +VT++CP+  ++A   K    
Sbjct: 326 AQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNPKDANSAKYWCH 385

Query: 595 YKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQA-G 768
           +++    R   +++S G +   +  R  L  +  N   ++ ++N++  +DAG Y C   G
Sbjct: 386 WEEAQNGRCPRLVESRGLMKEQYEGRLVLLTEPGNG-TYTVILNQLTDQDAGFYWCVTDG 444

Query: 769 DEE--SSADLQVLKPEPEL 819
           D    S+ +L+V++ EP L
Sbjct: 445 DTRWISTVELKVVQGEPSL 463


>ref|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
          Length = 640

 Score =  110 bits (276), Expect = 1e-24
 Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M  F   CLL         S + GP+ VS   G +V+I+C YP+ ++N H RKYWCR+G 
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236

Query: 280 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 456
             G C T++S+  Y    Y+GR  L +FP+ G FV+ +  L+  D G Y+CGLG S+  L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296

Query: 457 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 582
            F ++L VS  PGQ   +   T D G  +T +    S  A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336


>ref|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
          Length = 640

 Score =  110 bits (276), Expect = 1e-24
 Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M  F   CLL         S + GP+ VS   G +V+I+C YP+ ++N H RKYWCR+G 
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236

Query: 280 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 456
             G C T++S+  Y    Y+GR  L +FP+ G FV+ +  L+  D G Y+CGLG S+  L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296

Query: 457 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 582
            F ++L VS  PGQ   +   T D G  +T +    S  A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336


>ref|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
          Length = 419

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
           G S++I C  P T    H R Y CR I   GRCTT++SS  Y+ +++K R  L   P+  
Sbjct: 30  GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85

Query: 373 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 480
            F++ +  LT+ DSG+Y CG+ G + RG +  ++L V
Sbjct: 86  LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122


>ref|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 [Bos taurus].
          Length = 419

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
           G S++I C  P T    H R Y CR I   GRCTT++SS  Y+ +++K R  L   P+  
Sbjct: 30  GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85

Query: 373 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 480
            F++ +  LT+ DSG+Y CG+ G + RG +  ++L V
Sbjct: 86  LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122


>ref|XP_002696083.1| PREDICTED: CD300 molecule-like family member g [Bos taurus].
          Length = 295

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = +1

Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
           +  P+++S  EG +VS++C Y    + +H +KYWCR       RCT  + S  Y     +
Sbjct: 19  VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73

Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 501
           GR ++ + P    F + + +LT  D G Y CG+    + L FD ++ VS       PG +
Sbjct: 74  GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129

Query: 502 GDVHVYTADLGSTVTINCPFKSENAQKP 585
             + V TA LG T     PF   +   P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155


>ref|XP_002684488.1| PREDICTED: CD300 molecule-like family member g isoform 1 [Bos
           taurus].
          Length = 295

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
 Frame = +1

Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
           +  P+++S  EG +VS++C Y    + +H +KYWCR       RCT  + S  Y     +
Sbjct: 19  VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73

Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 501
           GR ++ + P    F + + +LT  D G Y CG+    + L FD ++ VS       PG +
Sbjct: 74  GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129

Query: 502 GDVHVYTADLGSTVTINCPFKSENAQKP 585
             + V TA LG T     PF   +   P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155


>ref|XP_872277.3| PREDICTED: CD300 molecule-like family member g isoform 2 [Bos
           taurus].
          Length = 256

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
 Frame = +1

Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
           +  P+++S  EG +VS++C Y    + +H +KYWCR       RCT  + S  Y     +
Sbjct: 19  VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73

Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
           GR ++ + P    F + + +LT  D G Y CG+    + L FD ++ VS
Sbjct: 74  GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVS 118


>ref|XP_002696260.1| PREDICTED: CD300 molecule-like family member d-like [Bos taurus].
          Length = 338

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
 Frame = +1

Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 315
           V    S I GP+ V  VE  S+++RC Y      R+ R  K+WCR  A   C  ++ + G
Sbjct: 74  VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 129

Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPG 495
              +  +GR ++ +  ++ +F + +  L   DS  Y CG+ I    L   V + +  G  
Sbjct: 130 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPGKR 189

Query: 496 QI 501
            I
Sbjct: 190 SI 191


>ref|XP_001256397.2| PREDICTED: immune receptor expressed on myeloid cells splice-like
           [Bos taurus].
          Length = 514

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
 Frame = +1

Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 315
           V    S I GP+ V  VE  S+++RC Y      R+ R  K+WCR  A   C  ++ + G
Sbjct: 117 VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 172

Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
              +  +GR ++ +  ++ +F + +  L   DS  Y CG+ I    L   V + +  G
Sbjct: 173 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPG 230


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,266,042
Number of extensions: 1169423
Number of successful extensions: 4639
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4593
Number of HSP's successfully gapped: 27
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin ...   411   e-115
Alignment   gi|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Can...    93   4e-19
Alignment   gi|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory ...    69   6e-12
Alignment   gi|XP_540416.2| PREDICTED: similar to NK inhibitory receptor pr...    62   1e-09
Alignment   gi|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precurso...    59   5e-09
Alignment   gi|XP_848904.1| PREDICTED: similar to triggering receptor expre...    59   9e-09
Alignment   gi|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precurso...    58   1e-08
Alignment   gi|XP_535568.1| PREDICTED: similar to Junctional adhesion molec...    54   3e-07
Alignment   gi|XP_851243.1| PREDICTED: similar to triggering receptor expre...    52   6e-07

>ref|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin receptor precursor
           (Poly-Ig receptor) (PIGR) [Canis familiaris].
          Length = 780

 Score =  411 bits (1057), Expect = e-115
 Identities = 197/287 (68%), Positives = 236/287 (82%), Gaps = 4/287 (1%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M   F ACLLA+FPVVS KSPIFGPQ+V+ VEG S SI CYYPATSVNRH+RKYWCR GA
Sbjct: 1   MRPLFLACLLAVFPVVSTKSPIFGPQEVNIVEGGSASITCYYPATSVNRHTRKYWCRQGA 60

Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
           KGRCTTLISS+GY+SKDY+GRAN+TNFP++ TFVM+I HLT+ DSG YKCGLGI+SRGLS
Sbjct: 61  KGRCTTLISSDGYVSKDYEGRANITNFPDSSTFVMNIDHLTQNDSGRYKCGLGINSRGLS 120

Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
           FDVSL+VS+GPG +GD  VYTADLG TVTINCPFK EN++K KSV KK  +  V VIDS 
Sbjct: 121 FDVSLDVSKGPGPLGDTEVYTADLGGTVTINCPFKPENSEKKKSVCKKTDKGCVTVIDST 180

Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
           G +N+++  R  L I GT+QL FSF+I ++QL DAG Y+CQ G+    E+S+ DLQVLKP
Sbjct: 181 GEVNSDYGGRIELEIMGTDQLTFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP 240

Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           EP L+YGDLRGSV FDCALG ++ N+AKFLC++ N + C+VVINTLG
Sbjct: 241 EPNLLYGDLRGSVIFDCALGSDVENMAKFLCRMSNEEACDVVINTLG 287



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 15/251 (5%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF-PENG 372
           G +V+I C  P    N   +K  C+   KG C T+I S G ++ DY GR  L     +  
Sbjct: 145 GGTVTINC--PFKPENSEKKKSVCKKTDKG-CVTVIDSTGEVNSDYGGRIELEIMGTDQL 201

Query: 373 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 552
           TF   I  +   D+G Y C +G  + G   +V L+V +      + ++   DL  +V  +
Sbjct: 202 TFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP-----EPNLLYGDLRGSVIFD 256

Query: 553 CPFKSENAQKPKSVYKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 729
           C   S+     K + +   +    +VI++ G  + +F  R  L  +  N+  FS  I  +
Sbjct: 257 CALGSDVENMAKFLCRMSNEEACDVVINTLGKKDRSFEGRILLIPK--NKRSFSVHITNL 314

Query: 730 QLRDAGIYICQA---GDEESSADLQ----------VLKPEPELIYGDLRGSVTFDCALGQ 870
           +  DAG Y+C A   G+ +  + +Q          V+ P P ++ G + GSV   C    
Sbjct: 315 RKEDAGNYLCGAHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKP 374

Query: 871 EMANVAKFLCQ 903
           +  N  K+ C+
Sbjct: 375 KETNSLKYWCR 385



 Score = 72.0 bits (175), Expect = 8e-13
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
 Frame = +1

Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIG--AKGRCTTLISSEGYISKDYKGRA 345
           P  V  V G SV++ C Y     N  S KYWCR      G C +L+ S+G +++ Y+GR 
Sbjct: 355 PSVVKGVVGGSVAVFCPYKPKETN--SLKYWCRWEDTQNGLCRSLVESDGGVTEQYEGRL 412

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
            L   P NGT+ + +  LT  D+G Y C     +   S  V L+V +G   +   +  TA
Sbjct: 413 ALHEEPGNGTYTVILNQLTANDAGFYWCLTNGDTHWRSM-VKLQVVEGEPSLKVPNNVTA 471

Query: 526 DLGSTVTINCPF 561
            +G T+ + C F
Sbjct: 472 LVGETLKLPCHF 483



 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 17/243 (6%)
 Frame = +1

Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG-TFVMDIGHLTRGDSGLYKCG 432
           K+ CR+  +  C  +I++ G   + ++GR  L   P+N  +F + I +L + D+G Y CG
Sbjct: 268 KFLCRMSNEEACDVVINTLGKKDRSFEGRILL--IPKNKRSFSVHITNLRKEDAGNYLCG 325

Query: 433 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYK 600
               G   +G       L V++         V    +G +V + CP+K +     K   +
Sbjct: 326 AHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKPKETNSLKYWCR 385

Query: 601 ----KLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAG 768
               + G  R LV +S+G +   +  R  L  +  N   ++ ++N++   DAG Y C   
Sbjct: 386 WEDTQNGLCRSLV-ESDGGVTEQYEGRLALHEEPGNG-TYTVILNQLTANDAGFYWCLTN 443

Query: 769 DE---ESSADLQVLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTC 924
            +    S   LQV++ EP L     +   +  ++   C    +  +  K+ C+  N K C
Sbjct: 444 GDTHWRSMVKLQVVEGEPSLKVPNNVTALVGETLKLPCHFPCKYYSYEKYWCKWSN-KDC 502

Query: 925 NVV 933
            ++
Sbjct: 503 KIL 505


>ref|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Canis familiaris].
          Length = 460

 Score = 92.8 bits (229), Expect = 4e-19
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGR-CTTLISSEGYISKDYKGRA 345
           GP+ VS   G +V+IRC+Y   ++N H RKYWCR+      C T++S+  Y    Y+GR 
Sbjct: 8   GPRLVSGKPGGAVTIRCHYAPLTINMHDRKYWCRLSPVTHICHTIVSTTHYTHLRYRGRV 67

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            L +FP    FV+ +  L+  D G Y+CG+G ++    F ++L VS GP
Sbjct: 68  ALADFPRRSLFVVTLAQLSPDDVGRYRCGIGNTNNMFFFSMNLTVSAGP 116


>ref|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory molecule 3 [Canis
           familiaris].
          Length = 410

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +1

Query: 127 LAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLI 303
           L I P V M+  +          G S++I C  P      H R Y CR I   G C T++
Sbjct: 12  LRILPEVKMEGML----------GGSITIECPLP----QMHVRLYLCREIAESGVCATVV 57

Query: 304 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
           S++ ++ ++YK R  L   P+   F++++  LT+ DSG+Y CG G+++ RG +  V+L V
Sbjct: 58  SNKNFVKEEYKHRVTLKPCPDRKLFLVEVTELTKSDSGIYACGTGMNTDRGKTQQVTLSV 117


>ref|XP_540416.2| PREDICTED: similar to NK inhibitory receptor precursor [Canis
           familiaris].
          Length = 289

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 34/121 (28%), Positives = 58/121 (47%)
 Frame = +1

Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGR 342
           I GP  V  + G S+++ C Y +T   +   K+WCR     RC  L+ + G   K  K +
Sbjct: 19  ITGPNAVRGLVGGSLTVECCYASTW--KTYSKWWCRGSIWRRCNILVQTTGSEQKVKKNK 76

Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYT 522
            ++ +  +N TF + +  LT  D+ +Y CG+  S   L  +V + +   P +  D    T
Sbjct: 77  VSIRDNQKNFTFSVTMEELTETDTDIYWCGIEKSGTDLGVEVKVTIDPAPAETKDPPTVT 136

Query: 523 A 525
           +
Sbjct: 137 S 137


>ref|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precursor (CMRF-35) [Canis
           familiaris].
          Length = 224

 Score = 59.3 bits (142), Expect = 5e-09
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
 Frame = +1

Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 330
           S + GP  VS   G S+S+RC Y      R   KYWC    K  C    ++ +     + 
Sbjct: 23  SSLRGPDSVSGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTESQREV 76

Query: 331 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
            KGR ++ + P + TF + +  LT GD+G YKCG+       +F V + V+ G
Sbjct: 77  TKGRVSIRDHPADLTFTVTLKSLTEGDAGTYKCGIDTLWVDPTFSVVVSVTPG 129


>ref|XP_848904.1| PREDICTED: similar to triggering receptor expressed on myeloid
           cells 4 [Canis familiaris].
          Length = 480

 Score = 58.5 bits (140), Expect = 9e-09
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
 Frame = +1

Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEG 315
           +VS    + GP+++S  EG +VS++C Y    +  +S KYWCR        C+  I +  
Sbjct: 157 MVSGYRAMVGPKEISGFEGDTVSLQCTY-REELKTYS-KYWCRERGIFVSHCSNTIYARE 214

Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
              +  +GR ++ + P+  T  + +  LT  D+G Y CG+    R  SF VSL V  GP
Sbjct: 215 DGQETTEGRVSIQDSPQTLTLSVTLRKLTLQDAGKYFCGVSKLGRDESFLVSLLVFPGP 273


>ref|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precursor (CMRF35-H9)
           (CMRF-35-H9) (Inhibitory receptor protein 60) (IRp60)
           (IRC1/IRC2) (NK inhibitory receptor) [Canis familiaris].
          Length = 335

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
 Frame = +1

Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 330
           S + GP  V    G S+S+RC Y      R   KYWC    K  C    ++ +     + 
Sbjct: 46  SSLRGPDSVLGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTKSQREV 99

Query: 331 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDV 510
            KGR ++ + P + TF + + +LT GD+G YKCG+ I     +F V + V+         
Sbjct: 100 TKGRVSIRDHPADLTFTVTLKNLTEGDAGTYKCGIDILWVDPTFSVVVSVNPATMSTSSA 159

Query: 511 HVYTADLGSTVT 546
            +    + ST+T
Sbjct: 160 SITVTQI-STIT 170


>ref|XP_535568.1| PREDICTED: similar to Junctional adhesion molecule B precursor
           (JAMA-A) (Junctional adhesion molecule 2) (Vascular
           endothelial junction-associated molecule) (VE-JAM)
           [Canis familiaris].
          Length = 298

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
           G Q V++ E   V + C YP  +++  SR  W ++G   R  + +  +  +  D+K RA 
Sbjct: 34  GHQVVTATEYQEVILACKYPKKTIS--SRLEWKKLG---RSVSFVYYQQALQGDFKDRAE 88

Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFD---VSLEVSQGPGQIGDVHV 516
           + +F       + I ++TR D+G Y+C +   S +G + +   V+LEV   P        
Sbjct: 89  MIDFS------IRIKNVTRNDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPACEVP 142

Query: 517 YTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTN 696
            +A  G+ V + C  K  N   P+  + K G    + +  N  L +  TN ++     + 
Sbjct: 143 NSALSGTVVELRCQDKEGN-PAPEYTWFKDG----VPLSENPKLGSQSTNSSYTMNTKSG 197

Query: 697 QLVFSFVINRIQLRDAGIYICQA 765
            L F    N +   D+G Y C+A
Sbjct: 198 TLQF----NTVSKLDSGEYSCEA 216


>ref|XP_851243.1| PREDICTED: similar to triggering receptor expressed on myeloid
           cells-like 4 [Canis familiaris].
          Length = 306

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = +1

Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANL 351
           P+ +  +EG ++S++C Y +   ++ S K WCR  +   CT L S        +K   ++
Sbjct: 26  PELLRKLEGETISVKCLYQSWQDSK-SVKAWCRQVSARTCTVLASYPRIQGMQWKPGNSI 84

Query: 352 TNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSF-DVSLEVSQGP 492
            ++   G F++ +  L   DSG Y CG+  SS  L++ ++ L VS  P
Sbjct: 85  QDWVRLGYFIVTMTKLKVEDSGFYSCGIYKSSEILTYRNIHLVVSPAP 132


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,934,380
Number of extensions: 1200505
Number of successful extensions: 4388
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4350
Number of HSP's successfully gapped: 12
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002635.2| polymeric immunoglobulin receptor precursor [Ho...   418   e-117
Alignment   gi|NP_001164102.1| high affinity immunoglobulin alpha and immun...    96   4e-20
Alignment   gi|NP_114418.2| high affinity immunoglobulin alpha and immunogl...    92   9e-19
Alignment   gi|NP_001116451.1| high affinity immunoglobulin alpha and immun...    92   9e-19
Alignment   gi|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform ...    72   1e-12
Alignment   gi|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [...    72   1e-12
Alignment   gi|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Hom...    61   1e-09
Alignment   gi|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [...    61   1e-09
Alignment   gi|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [...    59   8e-09
Alignment   gi|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [...    57   2e-08

>ref|NP_002635.2| polymeric immunoglobulin receptor precursor [Homo sapiens].
          Length = 764

 Score =  418 bits (1074), Expect = e-117
 Identities = 202/287 (70%), Positives = 238/287 (82%), Gaps = 4/287 (1%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M  F   CLLA+FP +S KSPIFGP++V+SVEG+SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1   MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGA 60

Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
           +G C TLISSEGY+S  Y GRANLTNFPENGTFV++I  L++ DSG YKCGLGI+SRGLS
Sbjct: 61  RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS 120

Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
           FDVSLEVSQGPG + D  VYT DLG TVTINCPFK+ENAQK KS+YK++G   VLVIDS+
Sbjct: 121 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 180

Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESS----ADLQVLKP 807
           GY+N N+T R  L IQGT QL+FS VIN+++L DAG Y+CQAGD+ +S    ADLQVLKP
Sbjct: 181 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 240

Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           EPEL+Y DLRGSVTF CALG E+ANVAKFLC+  +G+ C+VV+NTLG
Sbjct: 241 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLG 287



 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
 Frame = +1

Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI-GAK-GRCTTLISSEGYISKDYKGRA 345
           P  V  V G SV++ C  P       S KYWC   GA+ GRC  L+ SEG++   Y+GR 
Sbjct: 356 PTVVKGVAGGSVAVLC--PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 413

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
           +L   P NGTF + +  LT  D+G Y C L          V +++ +G   +      TA
Sbjct: 414 SLLEEPGNGTFTVILNQLTSRDAGFYWC-LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTA 472

Query: 526 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 699
            LG T+ + C  P K  + +K    +   G  + L     G       ++A ++    ++
Sbjct: 473 VLGETLKVPCHFPCKFSSYEKYWCKWNNTG-CQALPSQDEG------PSKAFVNCDENSR 525

Query: 700 LVFSFVINRIQLRDAGIYIC 759
           LV S  +N +   D G Y C
Sbjct: 526 LV-SLTLNLVTRADEGWYWC 544



 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 52/229 (22%), Positives = 105/229 (45%), Gaps = 10/229 (4%)
 Frame = +1

Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
           K+ CR  +   C  ++++ G  +  ++GR  L    ++G+F + I  L + D+G Y CG 
Sbjct: 268 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 327

Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPK--SVY 597
              G    G       L V++         V     G +V + CP+  + ++  K   ++
Sbjct: 328 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGGSVAVLCPYNRKESKSIKYWCLW 387

Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
           +     R  L++DS G++   +  R  L ++      F+ ++N++  RDAG Y C    +
Sbjct: 388 EGAQNGRCPLLVDSEGWVKAQYEGRLSL-LEEPGNGTFTVILNQLTSRDAGFYWCLTNGD 446

Query: 775 ---ESSADLQVLKPEPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKN 912
               ++ ++++++ EP L    + G+VT    LG+ +     F C+  +
Sbjct: 447 TLWRTTVEIKIIEGEPNL---KVPGNVT--AVLGETLKVPCHFPCKFSS 490


>ref|NP_001164102.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
           receptor isoform b [Homo sapiens].
          Length = 577

 Score = 96.3 bits (238), Expect = 4e-20
 Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
           G + VS   G +V+I+C+Y  +SVNRH RKYWCR+G  +  C T++S+  Y    Y+ R 
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            LT+FP+ G FV+ +  L+  D G Y CG+G  +  L   ++L +S GP
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTISAGP 219


>ref|NP_114418.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
           receptor isoform a [Homo sapiens].
          Length = 265

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
           G + VS   G +V+I+C+Y  +SVNRH RKYWCR+G  +  C T++S+  Y    Y+ R 
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
            LT+FP+ G FV+ +  L+  D G Y CG+G  +  L   ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216


>ref|NP_001116451.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
           receptor isoform a [Homo sapiens].
          Length = 265

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
           G + VS   G +V+I+C+Y  +SVNRH RKYWCR+G  +  C T++S+  Y    Y+ R 
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
            LT+FP+ G FV+ +  L+  D G Y CG+G  +  L   ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216


>ref|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform c [Homo sapiens].
          Length = 306

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
           G SV+I+C  P      H R Y CR +   G C T++S+  +I  +YKGR  L  +P   
Sbjct: 30  GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85

Query: 373 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
            F++++  LT  DSG+Y CG G+++ RG +  V+L V
Sbjct: 86  LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122


>ref|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [Homo sapiens].
          Length = 390

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
 Frame = +1

Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
           G SV+I+C  P      H R Y CR +   G C T++S+  +I  +YKGR  L  +P   
Sbjct: 30  GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85

Query: 373 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
            F++++  LT  DSG+Y CG G+++ RG +  V+L V
Sbjct: 86  LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122


>ref|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Homo sapiens].
          Length = 332

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
           GP+++S  EG +VS++C Y      R  RKYWCR G     RC+  I +E    +  KGR
Sbjct: 21  GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78

Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            ++ +  +  + ++ + +LT  D+G Y CG+       S  +SL V  GP
Sbjct: 79  VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128


>ref|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [Homo sapiens].
          Length = 307

 Score = 61.2 bits (147), Expect = 1e-09
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
           GP+++S  EG +VS++C Y      R  RKYWCR G     RC+  I +E    +  KGR
Sbjct: 21  GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78

Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            ++ +  +  + ++ + +LT  D+G Y CG+       S  +SL V  GP
Sbjct: 79  VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128


>ref|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [Homo sapiens].
          Length = 233

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
           GP+++S  EG +VS++C Y      R  RKYWCR G     RC+  I +E    +  KGR
Sbjct: 21  GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78

Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
            ++ +  +  + ++ + +LT  D+G Y CG+       S  +SL V  G
Sbjct: 79  VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPG 127


>ref|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [Homo sapiens].
          Length = 273

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
           GP+++S  EG +VS++C Y      R  RKYWCR G     RC+  I +E    +  KGR
Sbjct: 21  GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78

Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
            ++ +  +  + ++ + +LT  D+G Y CG+
Sbjct: 79  VSIRDSRQELSLIVTLWNLTLQDAGEYWCGV 109


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,209,890
Number of extensions: 1182024
Number of successful extensions: 4669
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 22
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035212.2| polymeric immunoglobulin receptor precursor [Mu...   345   2e-95
Alignment   gi|NP_001164103.1| high affinity immunoglobulin alpha and immun...   108   6e-24
Alignment   gi|NP_659209.2| high affinity immunoglobulin alpha and immunogl...   108   6e-24
Alignment   gi|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus muscul...    63   3e-10
Alignment   gi|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus muscul...    63   3e-10
Alignment   gi|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus].      63   3e-10
Alignment   gi|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus muscul...    62   7e-10
Alignment   gi|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [...    57   2e-08
Alignment   gi|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [...    57   2e-08
Alignment   gi|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus...    57   2e-08

>ref|NP_035212.2| polymeric immunoglobulin receptor precursor [Mus musculus].
          Length = 771

 Score =  345 bits (886), Expect = 2e-95
 Identities = 174/287 (60%), Positives = 213/287 (74%), Gaps = 4/287 (1%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           M  + +  L+ +F  VS KSPIFGPQ+VSS+EG SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1   MRLYLFTLLVTVFSGVSTKSPIFGPQEVSSIEGDSVSITCYYPDTSVNRHTRKYWCRQGA 60

Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
            G CTTLISS GY+SK+Y GRANL NFPEN TFV++I  LT+ D+G YKCGLG S+RGLS
Sbjct: 61  SGMCTTLISSNGYLSKEYSGRANLINFPENNTFVINIEQLTQDDTGSYKCGLGTSNRGLS 120

Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
           FDVSLEVSQ P    D HVYT D+G  VTI CPFK ENA   KS+ KK  Q   LVIDS 
Sbjct: 121 FDVSLEVSQVPELPSDTHVYTKDIGRNVTIECPFKRENAPSKKSLCKKTNQSCELVIDST 180

Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
             +N ++  RA L ++GT+  VF   I+ +   DAG+YICQAG+    ++ + DLQVL P
Sbjct: 181 EKVNPSYIGRAKLFMKGTDLTVFYVNISHLTHNDAGLYICQAGEGPSADKKNVDLQVLAP 240

Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           EPEL+Y DLR SVTF+C LG+E+AN AK+LC++ N +TC+V+INTLG
Sbjct: 241 EPELLYKDLRSSVTFECDLGREVANEAKYLCRM-NKETCDVIINTLG 286



 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
 Frame = +1

Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
           V  V G SV+I C  P       S KYWCR      G C  L+ ++  + ++Y+GR  L 
Sbjct: 358 VKGVTGGSVAIAC--PYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALF 415

Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG---PGQIGDVHVYTA 525
           + P NGT+ + +  LT  D+G Y C     SR  +  + L+V++    P         TA
Sbjct: 416 DQPGNGTYTVILNQLTTEDAGFYWCLTNGDSRWRT-TIELQVAEATREPNLEVTPQNATA 474

Query: 526 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 699
            LG T T++C  P K  + +K    +   G   +L     G        ++ +S   ++Q
Sbjct: 475 VLGETFTVSCHYPCKFYSQEKYWCKWSNKG-CHILPSHDEG------ARQSSVSCDQSSQ 527

Query: 700 LVFSFVINRIQLRDAGIYIC 759
           LV S  +N +   D G Y C
Sbjct: 528 LV-SMTLNPVSKEDEGWYWC 546



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 18/263 (6%)
 Frame = +1

Query: 199  SSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTF 378
            SSV+  C       N    KY CR+  K  C  +I++ G    D++GR  +T   +NG F
Sbjct: 251  SSVTFECDLGREVANE--AKYLCRMN-KETCDVIINTLGKRDPDFEGRILITPKDDNGRF 307

Query: 379  VMDIGHLTRGDSGLYKCGL---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVT 546
             + I  L + D+G Y+CG    G+   G       L V++         V     G +V 
Sbjct: 308  SVLITGLRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVKGVTGGSVA 367

Query: 547  INCPFKSENAQKPKSVYKKLGQIR---VLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFV 717
            I CP+  + +   K   +  G       +++ +   +   +  R  L  Q  N   ++ +
Sbjct: 368  IACPYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGNG-TYTVI 426

Query: 718  INRIQLRDAGIYICQAGDE---ESSADLQV--------LKPEPELIYGDLRGSVTFDCAL 864
            +N++   DAG Y C    +    ++ +LQV        L+  P+     L  + T  C  
Sbjct: 427  LNQLTTEDAGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHY 486

Query: 865  GQEMANVAKFLCQLKNGKTCNVV 933
              +  +  K+ C+  N K C+++
Sbjct: 487  PCKFYSQEKYWCKWSN-KGCHIL 508


>ref|NP_001164103.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
           receptor isoform 1 precursor [Mus musculus].
          Length = 591

 Score =  108 bits (270), Expect = 6e-24
 Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 345
           GP+ V+   G +V+I C+Y  +SVNRH RKYWCR+G+    C T++S+  Y   DY+GRA
Sbjct: 142 GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 201

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            LT+ P++G FV+ +  L+ GD GLY+CG+G  +  L F V+L VS GP
Sbjct: 202 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 250


>ref|NP_659209.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
           receptor isoform 2 precursor [Mus musculus].
          Length = 535

 Score =  108 bits (270), Expect = 6e-24
 Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 345
           GP+ V+   G +V+I C+Y  +SVNRH RKYWCR+G+    C T++S+  Y   DY+GRA
Sbjct: 86  GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 145

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
            LT+ P++G FV+ +  L+ GD GLY+CG+G  +  L F V+L VS GP
Sbjct: 146 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 194


>ref|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus musculus].
          Length = 331

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
           GP+++S  EG +VS+RC Y      +  RKYWCR G     RC  ++    Y ++D    
Sbjct: 21  GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
           +GR ++ + P+  +  + +  LT  DSG Y CG+    R  SF+V+L V  G
Sbjct: 75  RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126


>ref|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus musculus].
          Length = 415

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
           GP+++S  EG +VS+RC Y      +  RKYWCR G     RC  ++    Y ++D    
Sbjct: 21  GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
           +GR ++ + P+  +  + +  LT  DSG Y CG+    R  SF+V+L V  G
Sbjct: 75  RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126


>ref|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus].
          Length = 287

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
           GP+++S  EG +VS+RC Y      +  RKYWCR G     RC  ++    Y ++D    
Sbjct: 21  GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
           +GR ++ + P+  +  + +  LT  DSG Y CG+    R  SF+V+L V  G
Sbjct: 75  RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126


>ref|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus musculus].
          Length = 371

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
           GP+++S  EG +VS+RC Y      +  RKYWCR G     RC  ++    Y ++D    
Sbjct: 21  GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEV 480
           +GR ++ + P+  +  + +  LT  DSG Y CG+    R  SF+V+L V
Sbjct: 75  RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIV 123


>ref|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [Mus musculus].
          Length = 337

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
 Frame = +1

Query: 154 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 333
           + P+ GP++VS  E  S++++C Y  TS  +  +KYWC+   +  C TL+ ++       
Sbjct: 20  EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVH 513
           K R ++ +   +  F + +  L   D+G+Y C  GI+  GL     + V+ GP     + 
Sbjct: 78  KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGPAIQVPIT 135

Query: 514 VYT-ADLGSTVTI 549
           V T   + ST TI
Sbjct: 136 VPTMPPITSTTTI 148


>ref|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [Mus musculus].
          Length = 422

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
 Frame = +1

Query: 112 FYACLLAIFPVVSMKSPIFGPQDVSSVE-GSSVSIRCYYPATSVNRHSRKYWCRIGAK-G 285
           F+  LL   PV      +  P+   +VE G S+ I C  P      H R Y CR  AK G
Sbjct: 3   FWLWLLYFLPVSGALRVL--PEVQLNVEWGGSIIIECPLPQL----HVRMYLCRQMAKPG 56

Query: 286 RCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSF 462
            C+T++S+  ++ K+Y+ R  LT   +   F++++  LT  D G+Y CG+G+ + +G + 
Sbjct: 57  ICSTVVSNT-FVKKEYERRVTLTPCLDKKLFLVEMTQLTENDDGIYACGVGMKTDKGKTQ 115

Query: 463 DVSLEV 480
            ++L V
Sbjct: 116 KITLNV 121


>ref|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus musculus].
          Length = 330

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 33/113 (29%), Positives = 59/113 (52%)
 Frame = +1

Query: 154 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 333
           + P+ GP++VS  E  S++++C Y  TS  +  +KYWC+   +  C TL+ ++       
Sbjct: 20  EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77

Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
           K R ++ +   +  F + +  L   D+G+Y C  GI+  GL     + V+ GP
Sbjct: 78  KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGP 128


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,007,991
Number of extensions: 983421
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3828
Number of HSP's successfully gapped: 19
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa].      575   e-164
Alignment   gi|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor...   310   7e-85
Alignment   gi|XP_003357468.1| PREDICTED: high affinity immunoglobulin alph...    92   5e-19
Alignment   gi|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor...    70   2e-12
Alignment   gi|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule...    66   2e-11
Alignment   gi|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus ...    56   3e-08
Alignment   gi|XP_003361575.1| PREDICTED: junctional adhesion molecule B-li...    51   1e-06
Alignment   gi|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus ...    50   2e-06
Alignment   gi|XP_001924658.2| PREDICTED: hypothetical protein LOC100153074...    49   4e-06

>ref|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa].
          Length = 758

 Score =  575 bits (1481), Expect = e-164
 Identities = 283/283 (100%), Positives = 283/283 (100%)
 Frame = +1

Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
           MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA
Sbjct: 1   MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 60

Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
           KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS
Sbjct: 61  KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 120

Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
           FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN
Sbjct: 121 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 180

Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 819
           GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL
Sbjct: 181 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 240

Query: 820 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG
Sbjct: 241 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 283



 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 4/201 (1%)
 Frame = +1

Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
           V  V G SV++ C Y     N  S KYWCR      GRC  L+ S G +++ Y+GR  L 
Sbjct: 354 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 411

Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 534
             P NGTF + +  LT  D+G Y C     SR  S  V L++ +G   +      TA +G
Sbjct: 412 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 470

Query: 535 STVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 708
            T+ ++C  P K  + QK    +   G  R L     G       ++A ++    +Q++ 
Sbjct: 471 ETLKLSCHFPCKFYSYQKYWCKWSNTG-CRALPSQDEG------QSQAFVNCDKKSQII- 522

Query: 709 SFVINRIQLRDAGIYICQAGD 771
           S  +N ++  D G Y C   D
Sbjct: 523 SLNLNPVRKEDEGWYWCGVKD 543



 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
 Frame = +1

Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
           K+ C++     C  +I++ G  ++D++GR  LT   EN  F + I  L + D+G Y CG 
Sbjct: 264 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 322

Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 597
              G    G       L +++         V    +G +V + CP+  K  N+ K    +
Sbjct: 323 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 382

Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
           ++    R   +++S+G +N  +  R  L  +  N   F+ ++N++  RDAG Y C   ++
Sbjct: 383 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 441

Query: 775 ---ESSADLQVLKPEPEL 819
               S+ +L++++ EP L
Sbjct: 442 SRWRSTVELKIVEGEPNL 459


>ref|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor-like, partial [Sus
           scrofa].
          Length = 405

 Score =  310 bits (794), Expect = 7e-85
 Identities = 153/153 (100%), Positives = 153/153 (100%)
 Frame = +1

Query: 490 PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 669
           PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR
Sbjct: 1   PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 60

Query: 670 AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 849
           AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT
Sbjct: 61  AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 120

Query: 850 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
           FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG
Sbjct: 121 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 153



 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
 Frame = +1

Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
           V  V G SV++ C Y     N  S KYWCR      GRC  L+ S G +++ Y+GR  L 
Sbjct: 224 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 281

Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 534
             P NGTF + +  LT  D+G Y C     SR  S  V L++ +G   +      TA +G
Sbjct: 282 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 340

Query: 535 STVTINCPF 561
            T+ ++C F
Sbjct: 341 ETLKLSCHF 349



 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
 Frame = +1

Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
           K+ C++     C  +I++ G  ++D++GR  LT   EN  F + I  L + D+G Y CG 
Sbjct: 134 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 192

Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 597
              G    G       L +++         V    +G +V + CP+  K  N+ K    +
Sbjct: 193 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 252

Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
           ++    R   +++S+G +N  +  R  L  +  N   F+ ++N++  RDAG Y C   ++
Sbjct: 253 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 311

Query: 775 ---ESSADLQVLKPEPEL---------IYGDLRGSVTFDCALGQEMAN 882
               S+ +L++++ EP L         +   L+ S  F C   +E+AN
Sbjct: 312 SRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCIRWKELAN 359


>ref|XP_003357468.1| PREDICTED: high affinity immunoglobulin alpha and immunoglobulin mu
           Fc receptor-like [Sus scrofa].
          Length = 462

 Score = 91.7 bits (226), Expect = 5e-19
 Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
 Frame = +1

Query: 70  GRHSLEEPQA---MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSV 240
           G   +  P+A   M    + CLL         + + GP+ VS   G +V+I+C Y    +
Sbjct: 10  GEQKVTNPRAGWKMPFLLFLCLL------QAANALKGPRLVSGEPGGAVTIQCKYGPLLI 63

Query: 241 NRHSRKYWCRIG-AKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSG 417
           + H RKYWCR+  + G C T++S+  Y    Y GR  L +FP+ G FV+ +  L+  D G
Sbjct: 64  SSHQRKYWCRLNPSTGLCHTIVSTNRYTRPYYHGRVALEDFPKKGLFVVRLCQLSPEDVG 123

Query: 418 LYKCGLGISSRGLSFDVSLEVSQGPGQI 501
            Y+CG+G ++  L F ++L VS G G +
Sbjct: 124 YYRCGIGNNNNLLFFSMNLTVSAGGGWV 151


>ref|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor-like [Sus scrofa].
          Length = 581

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 6/264 (2%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
           GP+ V   E  S++++C Y  T       K+WCR    G C  L+ +     +  + R +
Sbjct: 19  GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 76

Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
           + +  EN TF +    L   D+G+Y CG+       +  VS+ V  GP  +        +
Sbjct: 77  IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 131

Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
            GS + + C +    E+  K        G  ++LV  +    +     R  +SI+   + 
Sbjct: 132 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 187

Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELIYGDLRGSVTFDCALGQ 870
             F+     ++L DAGIY C   + G + +      + P P+ + G  RGS+   C    
Sbjct: 188 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRGQERGSLAVQCRYTP 247

Query: 871 EMANVAKFLCQLKNGKTCNVVINT 942
              +  K+ C+  +   C +++ T
Sbjct: 248 GWESHGKWWCRGADWGNCKILVQT 271



 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 12/270 (4%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
           GP+ V   E  S++++C Y  T       K+WCR    G C  L+ +     +  + R +
Sbjct: 123 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 180

Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
           + +  EN TF +    L   D+G+Y CG+       +  VS+ V  GP  +        +
Sbjct: 181 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 235

Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
            GS + + C +    E+  K        G  ++LV  +    +     R  +SI+   + 
Sbjct: 236 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 291

Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPE------PELIYGDLRGSVTF 852
             F+     ++L DAGIY C   + G + +      + P       P+ + G  RGS+  
Sbjct: 292 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQERGSLAV 351

Query: 853 DCALGQEMANVAKFLCQLKNGKTCNVVINT 942
            C       +  K+ C+  +  +C +++ T
Sbjct: 352 QCRYTPGWESHGKWWCRGADWDSCKILVQT 381



 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 6/224 (2%)
 Frame = +1

Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
           GP+ V   E  S++++C Y  T       K+WCR    G C  L+ +     +  + R +
Sbjct: 227 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 284

Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
           + +  EN TF +    L   D+G+Y CG+       +  VS+ V  G   +         
Sbjct: 285 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQ 344

Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
              ++ + C +    E+  K           ++LV  +    +     R  +SI+   + 
Sbjct: 345 ERGSLAVQCRYTPGWESHGKWWCRGADWDSCKILVQTT---ASEPEVKRDRVSIRDDREN 401

Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELI 822
             F+     ++L DAG+Y C   + G +  +     + P P  +
Sbjct: 402 RTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTV 445



 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
 Frame = +1

Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYK 336
           SP+ GP+ V   E  S++++C Y  T       K+WCR      C  L+ +     +  +
Sbjct: 333 SPVTGPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWDSCKILVQTTASEPEVKR 390

Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQI----G 504
            R ++ +  EN TF +    L   D+G+Y CG+          V + V   P  +     
Sbjct: 391 DRVSIRDDRENRTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTVPTTTS 450

Query: 505 DVHVYTADLGS 537
            ++ +TA + S
Sbjct: 451 AINTFTAPVTS 461


>ref|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule 3-like [Sus scrofa].
          Length = 420

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +1

Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRANLTN 357
           +  V G S+ I C  P T V    R Y CR  A  G CTT++S++ ++ +++K R  L  
Sbjct: 25  LEGVLGGSIVIECPLPETPV----RLYLCRTMALSGTCTTVVSNKNFVLEEFKHRVTLEL 80

Query: 358 FPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFDVSLEV 480
            P+   F++++  LT  DSG+Y CG+G+ ++RG +  V+L V
Sbjct: 81  CPDRKLFLVEVTELTERDSGVYACGVGMNTNRGKTQQVTLTV 122


>ref|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus scrofa].
          Length = 396

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
 Frame = +1

Query: 115 YACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAK-GR 288
           +ACL     V+     + GP+++S   G +VS++C Y   ++  H RKYWCR IG    R
Sbjct: 8   WACL-----VLPGYGTLVGPKEISGFVGDTVSLQCTY-GEALKTH-RKYWCRKIGYLIAR 60

Query: 289 CTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDV 468
           C+  + S  Y     +GR ++ + P    F + + +LT  D G Y CG+       SF V
Sbjct: 61  CSGTVFSGEY---GQEGRVSVHDSPRELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSV 117

Query: 469 SLEV-SQGPGQIGDVHVYTADLGST 540
           SL V    PG    + V T  LG T
Sbjct: 118 SLHVFPASPGL--HLTVSTTKLGKT 140


>ref|XP_003361575.1| PREDICTED: junctional adhesion molecule B-like [Sus scrofa].
          Length = 298

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
 Frame = +1

Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF 360
           V+++E   V + C YP  +V+  SR  W ++G   R  + +  +  +   +K RA L +F
Sbjct: 38  VTAIEYQEVILACKYPKKTVS--SRLEWKKLG---RGISFVYYQQALQGAFKDRAELIDF 92

Query: 361 PENGTFVMDIGHLTRGDSGLYKCGLGISS---RGLSFD-VSLEVSQGPGQIGDVHVYTAD 528
                  + I ++TR D+G Y+C +   S   + L+ D V+LEV   P         +A 
Sbjct: 93  S------IRIKNVTRNDAGKYRCEISAPSEQGQNLAEDTVTLEVLVAPAVPSCEVPSSAL 146

Query: 529 LGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 708
            G+TV + C  K  N   P+  + K G    + +  N  L+   TN ++     +  L F
Sbjct: 147 SGTTVELRCQDKEGN-PAPEYTWFKDG----IRLSGNPRLDAQSTNSSYTMNVKSGSLQF 201

Query: 709 SFVINRIQLRDAGIYICQA 765
               N +   D+G Y C+A
Sbjct: 202 ----NAVSKLDSGEYSCEA 216


>ref|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus scrofa].
          Length = 292

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 33/128 (25%), Positives = 55/128 (42%)
 Frame = +1

Query: 124 LLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLI 303
           LL +   +S  SP+ GP+ +   E  S++++C Y  T       K+WCR      C  L+
Sbjct: 6   LLPLLFQLSGSSPVTGPKALRGQERGSLTVQCRY--TPGWESHGKWWCRGADWSSCKILV 63

Query: 304 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
            +     +  + R ++ +  EN T  +    L   D+G+Y CG+          V + V 
Sbjct: 64  QTTASEPEVKRDRVSIRDDRENRTITVTTEQLRLDDAGIYWCGIARVGTDHGAQVRVTVD 123

Query: 484 QGPGQIGD 507
             P   GD
Sbjct: 124 PAPVTSGD 131


>ref|XP_001924658.2| PREDICTED: hypothetical protein LOC100153074 [Sus scrofa].
          Length = 499

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
 Frame = +1

Query: 49  NRARRWSGRHSLEEPQ---------------AMTRFFYACLLAIFPVVSMKSPIFGPQDV 183
           +RAR W  R  L  P                A+ +   A    + P++ +  P+ G   +
Sbjct: 38  DRARCWKNRAQLLVPSPGPPPPTPAMSSPTSALEKGLVAWKAPLPPLLLLLLPLSGSWAL 97

Query: 184 S------SVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRA 345
           S      SV G ++S+RC YP  +   + RK WC+  ++  CT L++S          R 
Sbjct: 98  SKAHHLQSVAGQTLSLRCQYPPKN-GPYERKGWCKEVSELLCTGLVTSSRPHMLAQASRF 156

Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKC 429
           ++ + P +G FV+ +  L   D+G Y C
Sbjct: 157 SIWDSPSSGFFVVTMTGLREEDTGHYWC 184


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,334,578
Number of extensions: 755528
Number of successful extensions: 2878
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2832
Number of HSP's successfully gapped: 16
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002643
         (948 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                         918   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score =  918 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                            
Query: 486      aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 545
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889670 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73889729

                                                                            
Query: 546      catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 605
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889730 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73889789

                                                                            
Query: 606      gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 665
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889790 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73889849

                                                                            
Query: 666      cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 725
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889850 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73889909

                                                                            
Query: 726      aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 785
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889910 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73889969

                                                                            
Query: 786      tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 845
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889970 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73890029

                                                                            
Query: 846      gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890030 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73890089

                                                           
Query: 906      aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 948
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890090 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 73890132



 Score =  918 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                            
Query: 486      aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 545
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971214 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73971273

                                                                            
Query: 546      catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 605
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971274 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73971333

                                                                            
Query: 606      gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 665
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971334 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73971393

                                                                            
Query: 666      cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 725
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971394 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73971453

                                                                            
Query: 726      aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 785
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971454 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73971513

                                                                            
Query: 786      tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 845
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971514 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73971573

                                                                            
Query: 846      gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971574 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73971633

                                                           
Query: 906      aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 948
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971634 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 73971676



 Score =  686 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Plus

                                                                            
Query: 140      cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 199
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73969943 cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 73970002

                                                                            
Query: 200      gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 259
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970003 gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 73970062

                                                                            
Query: 260      actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 319
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970063 actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 73970122

                                                                            
Query: 320      tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 379
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970123 tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 73970182

                                                                            
Query: 380      tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 439
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970183 tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 73970242

                                                                  
Query: 440      ttagcagccgaggcctgtcttttgacgtgagcctggaggtcagccaaggt 489
                ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 73970243 ttagcagccgaggcctgtcttttgatgtgagcctggaggtcagccaaggt 73970292



 Score =  266 bits (134), Expect = 2e-68
 Identities = 140/142 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1        gtcttggaagacaaggcatttcatcacctcgtgctattgtctttcagcaaccgcgcaaga 60
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73968604 gtcttggaagacaaggcatttcatcacctcgtgctattgtctttcagcaaccacgcaaga 73968663

                                                                            
Query: 61       aggtggtctgggcggcacagccttgaggagccacaagccatgacacgcttcttctatgcc 120
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 73968664 aggtggtctgggcggcacagccttgaggagccacaagccatgacacgcttcttctacgcc 73968723

                                      
Query: 121      tgcctgctggctatcttcccag 142
                ||||||||||||||||||||||
Sbjct: 73968724 tgcctgctggctatcttcccag 73968745


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,805,477
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 4
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)