Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776568.1| polymeric immunoglobulin receptor precursor [Bo... 426 e-119
Alignment gi|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule... 110 1e-24
Alignment gi|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule... 110 1e-24
Alignment gi|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule... 71 1e-12
Alignment gi|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 ... 71 1e-12
Alignment gi|XP_002696083.1| PREDICTED: CD300 molecule-like family member... 62 1e-09
Alignment gi|XP_002684488.1| PREDICTED: CD300 molecule-like family member... 62 1e-09
Alignment gi|XP_872277.3| PREDICTED: CD300 molecule-like family member g ... 56 4e-08
Alignment gi|XP_002696260.1| PREDICTED: CD300 molecule-like family member... 56 5e-08
Alignment gi|XP_001256397.2| PREDICTED: immune receptor expressed on myel... 55 7e-08
>ref|NP_776568.1| polymeric immunoglobulin receptor precursor [Bos taurus].
Length = 757
Score = 426 bits (1094), Expect = e-119
Identities = 208/287 (72%), Positives = 239/287 (83%), Gaps = 4/287 (1%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M+R F ACLLAIFPVVSMKSPIFGP++VSSVEG SVSI+CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MSRLFLACLLAIFPVVSMKSPIFGPEEVSSVEGRSVSIKCYYPPTSVNRHTRKYWCRQGA 60
Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
+GRCTTLISSEGY+S DY GRANLTNFPE+GTFV+DI HLT DSG YKCGLGISSRGL+
Sbjct: 61 QGRCTTLISSEGYVSDDYVGRANLTNFPESGTFVVDISHLTHKDSGRYKCGLGISSRGLN 120
Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
FDVSLEVSQ P Q HVYT DLG TVTINCPF N++K KS+ KK Q V+DS
Sbjct: 121 FDVSLEVSQDPAQASHAHVYTIDLGRTVTINCPFTRANSEKRKSLCKKTIQDCFQVVDST 180
Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
GY++N++ +RAH+SI GTN LVFS VINR++L DAG+Y+CQAGD ++ + DLQVL+P
Sbjct: 181 GYVSNSYKDRAHISILGTNTLVFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEP 240
Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
EPEL+YGDLR SVTFDC+LG E+ANV KFLCQ KNG CNVVINTLG
Sbjct: 241 EPELVYGDLRSSVTFDCSLGPEVANVPKFLCQKKNGGACNVVINTLG 287
Score = 87.8 bits (216), Expect = 1e-17
Identities = 78/264 (29%), Positives = 121/264 (45%), Gaps = 18/264 (6%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG- 372
G +V+I C P T N RK C+ + C ++ S GY+S YK RA+++ N
Sbjct: 145 GRTVTINC--PFTRANSEKRKSLCKKTIQD-CFQVVDSTGYVSNSYKDRAHISILGTNTL 201
Query: 373 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 552
F + I + D+G+Y C G ++ ++ L+V + ++ VY DL S+VT +
Sbjct: 202 VFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEPEPEL----VY-GDLRSSVTFD 256
Query: 553 CPFKSENAQKPKSV-YKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 729
C E A PK + KK G +VI++ G +F R +S+ N VFS I +
Sbjct: 257 CSLGPEVANVPKFLCQKKNGGACNVVINTLGKKAQDFQGRI-VSVPKDNG-VFSVHITSL 314
Query: 730 QLRDAGIYICQAGDEESSAD-------------LQVLKPEPELIYGDLRGSVTFDCALGQ 870
+ DAG Y+C A E D + P ++ G GSVT C
Sbjct: 315 RKEDAGRYVCGAQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNP 374
Query: 871 EMANVAKFLC---QLKNGKTCNVV 933
+ AN AK+ C + +NG+ +V
Sbjct: 375 KDANSAKYWCHWEEAQNGRCPRLV 398
Score = 75.1 bits (183), Expect = 8e-14
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +1
Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRA 345
P V V G SV++ C Y N S KYWC GRC L+ S G + + Y+GR
Sbjct: 355 PSVVKGVRGGSVTVSCPYNPKDAN--SAKYWCHWEEAQNGRCPRLVESRGLMKEQYEGRL 412
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
L P NGT+ + + LT D+G Y C +R +S V L+V QG + TA
Sbjct: 413 VLLTEPGNGTYTVILNQLTDQDAGFYWCVTDGDTRWIS-TVELKVVQGEPSLKVPKNVTA 471
Query: 526 DLGSTVTINCPF 561
LG + ++C F
Sbjct: 472 WLGEPLKLSCHF 483
Score = 58.9 bits (141), Expect = 6e-09
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 11/199 (5%)
Frame = +1
Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFP-ENGTFVMDIGHLTRGDSGLYKCG 432
K+ C+ G C +I++ G ++D++GR + + P +NG F + I L + D+G Y CG
Sbjct: 268 KFLCQKKNGGACNVVINTLGKKAQDFQGR--IVSVPKDNGVFSVHITSLRKEDAGRYVCG 325
Query: 433 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPK--SV 594
G G L V++ V G +VT++CP+ ++A K
Sbjct: 326 AQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNPKDANSAKYWCH 385
Query: 595 YKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQA-G 768
+++ R +++S G + + R L + N ++ ++N++ +DAG Y C G
Sbjct: 386 WEEAQNGRCPRLVESRGLMKEQYEGRLVLLTEPGNG-TYTVILNQLTDQDAGFYWCVTDG 444
Query: 769 DEE--SSADLQVLKPEPEL 819
D S+ +L+V++ EP L
Sbjct: 445 DTRWISTVELKVVQGEPSL 463
>ref|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 640
Score = 110 bits (276), Expect = 1e-24
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M F CLL S + GP+ VS G +V+I+C YP+ ++N H RKYWCR+G
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236
Query: 280 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 456
G C T++S+ Y Y+GR L +FP+ G FV+ + L+ D G Y+CGLG S+ L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296
Query: 457 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 582
F ++L VS PGQ + T D G +T + S A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336
>ref|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 640
Score = 110 bits (276), Expect = 1e-24
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M F CLL S + GP+ VS G +V+I+C YP+ ++N H RKYWCR+G
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236
Query: 280 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 456
G C T++S+ Y Y+GR L +FP+ G FV+ + L+ D G Y+CGLG S+ L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296
Query: 457 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 582
F ++L VS PGQ + T D G +T + S A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336
>ref|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 419
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
G S++I C P T H R Y CR I GRCTT++SS Y+ +++K R L P+
Sbjct: 30 GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85
Query: 373 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 480
F++ + LT+ DSG+Y CG+ G + RG + ++L V
Sbjct: 86 LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122
>ref|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 [Bos taurus].
Length = 419
Score = 71.2 bits (173), Expect = 1e-12
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
G S++I C P T H R Y CR I GRCTT++SS Y+ +++K R L P+
Sbjct: 30 GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85
Query: 373 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 480
F++ + LT+ DSG+Y CG+ G + RG + ++L V
Sbjct: 86 LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122
>ref|XP_002696083.1| PREDICTED: CD300 molecule-like family member g [Bos taurus].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +1
Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 501
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS PG +
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129
Query: 502 GDVHVYTADLGSTVTINCPFKSENAQKP 585
+ V TA LG T PF + P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155
>ref|XP_002684488.1| PREDICTED: CD300 molecule-like family member g isoform 1 [Bos
taurus].
Length = 295
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +1
Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 501
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS PG +
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129
Query: 502 GDVHVYTADLGSTVTINCPFKSENAQKP 585
+ V TA LG T PF + P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155
>ref|XP_872277.3| PREDICTED: CD300 molecule-like family member g isoform 2 [Bos
taurus].
Length = 256
Score = 56.2 bits (134), Expect = 4e-08
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = +1
Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 336
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVS 118
>ref|XP_002696260.1| PREDICTED: CD300 molecule-like family member d-like [Bos taurus].
Length = 338
Score = 55.8 bits (133), Expect = 5e-08
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +1
Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 315
V S I GP+ V VE S+++RC Y R+ R K+WCR A C ++ + G
Sbjct: 74 VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 129
Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPG 495
+ +GR ++ + ++ +F + + L DS Y CG+ I L V + + G
Sbjct: 130 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPGKR 189
Query: 496 QI 501
I
Sbjct: 190 SI 191
>ref|XP_001256397.2| PREDICTED: immune receptor expressed on myeloid cells splice-like
[Bos taurus].
Length = 514
Score = 55.5 bits (132), Expect = 7e-08
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +1
Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 315
V S I GP+ V VE S+++RC Y R+ R K+WCR A C ++ + G
Sbjct: 117 VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 172
Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
+ +GR ++ + ++ +F + + L DS Y CG+ I L V + + G
Sbjct: 173 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPG 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,266,042
Number of extensions: 1169423
Number of successful extensions: 4639
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4593
Number of HSP's successfully gapped: 27
Length of query: 316
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,306,398
Effective search space: 3061569172
Effective search space used: 3061569172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin ... 411 e-115
Alignment gi|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Can... 93 4e-19
Alignment gi|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory ... 69 6e-12
Alignment gi|XP_540416.2| PREDICTED: similar to NK inhibitory receptor pr... 62 1e-09
Alignment gi|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precurso... 59 5e-09
Alignment gi|XP_848904.1| PREDICTED: similar to triggering receptor expre... 59 9e-09
Alignment gi|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precurso... 58 1e-08
Alignment gi|XP_535568.1| PREDICTED: similar to Junctional adhesion molec... 54 3e-07
Alignment gi|XP_851243.1| PREDICTED: similar to triggering receptor expre... 52 6e-07
>ref|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin receptor precursor
(Poly-Ig receptor) (PIGR) [Canis familiaris].
Length = 780
Score = 411 bits (1057), Expect = e-115
Identities = 197/287 (68%), Positives = 236/287 (82%), Gaps = 4/287 (1%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M F ACLLA+FPVVS KSPIFGPQ+V+ VEG S SI CYYPATSVNRH+RKYWCR GA
Sbjct: 1 MRPLFLACLLAVFPVVSTKSPIFGPQEVNIVEGGSASITCYYPATSVNRHTRKYWCRQGA 60
Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
KGRCTTLISS+GY+SKDY+GRAN+TNFP++ TFVM+I HLT+ DSG YKCGLGI+SRGLS
Sbjct: 61 KGRCTTLISSDGYVSKDYEGRANITNFPDSSTFVMNIDHLTQNDSGRYKCGLGINSRGLS 120
Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
FDVSL+VS+GPG +GD VYTADLG TVTINCPFK EN++K KSV KK + V VIDS
Sbjct: 121 FDVSLDVSKGPGPLGDTEVYTADLGGTVTINCPFKPENSEKKKSVCKKTDKGCVTVIDST 180
Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
G +N+++ R L I GT+QL FSF+I ++QL DAG Y+CQ G+ E+S+ DLQVLKP
Sbjct: 181 GEVNSDYGGRIELEIMGTDQLTFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP 240
Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
EP L+YGDLRGSV FDCALG ++ N+AKFLC++ N + C+VVINTLG
Sbjct: 241 EPNLLYGDLRGSVIFDCALGSDVENMAKFLCRMSNEEACDVVINTLG 287
Score = 73.9 bits (180), Expect = 2e-13
Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 15/251 (5%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF-PENG 372
G +V+I C P N +K C+ KG C T+I S G ++ DY GR L +
Sbjct: 145 GGTVTINC--PFKPENSEKKKSVCKKTDKG-CVTVIDSTGEVNSDYGGRIELEIMGTDQL 201
Query: 373 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 552
TF I + D+G Y C +G + G +V L+V + + ++ DL +V +
Sbjct: 202 TFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP-----EPNLLYGDLRGSVIFD 256
Query: 553 CPFKSENAQKPKSVYKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 729
C S+ K + + + +VI++ G + +F R L + N+ FS I +
Sbjct: 257 CALGSDVENMAKFLCRMSNEEACDVVINTLGKKDRSFEGRILLIPK--NKRSFSVHITNL 314
Query: 730 QLRDAGIYICQA---GDEESSADLQ----------VLKPEPELIYGDLRGSVTFDCALGQ 870
+ DAG Y+C A G+ + + +Q V+ P P ++ G + GSV C
Sbjct: 315 RKEDAGNYLCGAHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKP 374
Query: 871 EMANVAKFLCQ 903
+ N K+ C+
Sbjct: 375 KETNSLKYWCR 385
Score = 72.0 bits (175), Expect = 8e-13
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Frame = +1
Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIG--AKGRCTTLISSEGYISKDYKGRA 345
P V V G SV++ C Y N S KYWCR G C +L+ S+G +++ Y+GR
Sbjct: 355 PSVVKGVVGGSVAVFCPYKPKETN--SLKYWCRWEDTQNGLCRSLVESDGGVTEQYEGRL 412
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
L P NGT+ + + LT D+G Y C + S V L+V +G + + TA
Sbjct: 413 ALHEEPGNGTYTVILNQLTANDAGFYWCLTNGDTHWRSM-VKLQVVEGEPSLKVPNNVTA 471
Query: 526 DLGSTVTINCPF 561
+G T+ + C F
Sbjct: 472 LVGETLKLPCHF 483
Score = 54.7 bits (130), Expect = 1e-07
Identities = 58/243 (23%), Positives = 107/243 (44%), Gaps = 17/243 (6%)
Frame = +1
Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG-TFVMDIGHLTRGDSGLYKCG 432
K+ CR+ + C +I++ G + ++GR L P+N +F + I +L + D+G Y CG
Sbjct: 268 KFLCRMSNEEACDVVINTLGKKDRSFEGRILL--IPKNKRSFSVHITNLRKEDAGNYLCG 325
Query: 433 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYK 600
G +G L V++ V +G +V + CP+K + K +
Sbjct: 326 AHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKPKETNSLKYWCR 385
Query: 601 ----KLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAG 768
+ G R LV +S+G + + R L + N ++ ++N++ DAG Y C
Sbjct: 386 WEDTQNGLCRSLV-ESDGGVTEQYEGRLALHEEPGNG-TYTVILNQLTANDAGFYWCLTN 443
Query: 769 DE---ESSADLQVLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTC 924
+ S LQV++ EP L + + ++ C + + K+ C+ N K C
Sbjct: 444 GDTHWRSMVKLQVVEGEPSLKVPNNVTALVGETLKLPCHFPCKYYSYEKYWCKWSN-KDC 502
Query: 925 NVV 933
++
Sbjct: 503 KIL 505
>ref|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Canis familiaris].
Length = 460
Score = 92.8 bits (229), Expect = 4e-19
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGR-CTTLISSEGYISKDYKGRA 345
GP+ VS G +V+IRC+Y ++N H RKYWCR+ C T++S+ Y Y+GR
Sbjct: 8 GPRLVSGKPGGAVTIRCHYAPLTINMHDRKYWCRLSPVTHICHTIVSTTHYTHLRYRGRV 67
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
L +FP FV+ + L+ D G Y+CG+G ++ F ++L VS GP
Sbjct: 68 ALADFPRRSLFVVTLAQLSPDDVGRYRCGIGNTNNMFFFSMNLTVSAGP 116
>ref|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory molecule 3 [Canis
familiaris].
Length = 410
Score = 68.9 bits (167), Expect = 6e-12
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +1
Query: 127 LAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLI 303
L I P V M+ + G S++I C P H R Y CR I G C T++
Sbjct: 12 LRILPEVKMEGML----------GGSITIECPLP----QMHVRLYLCREIAESGVCATVV 57
Query: 304 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
S++ ++ ++YK R L P+ F++++ LT+ DSG+Y CG G+++ RG + V+L V
Sbjct: 58 SNKNFVKEEYKHRVTLKPCPDRKLFLVEVTELTKSDSGIYACGTGMNTDRGKTQQVTLSV 117
>ref|XP_540416.2| PREDICTED: similar to NK inhibitory receptor precursor [Canis
familiaris].
Length = 289
Score = 61.6 bits (148), Expect = 1e-09
Identities = 34/121 (28%), Positives = 58/121 (47%)
Frame = +1
Query: 163 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGR 342
I GP V + G S+++ C Y +T + K+WCR RC L+ + G K K +
Sbjct: 19 ITGPNAVRGLVGGSLTVECCYASTW--KTYSKWWCRGSIWRRCNILVQTTGSEQKVKKNK 76
Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYT 522
++ + +N TF + + LT D+ +Y CG+ S L +V + + P + D T
Sbjct: 77 VSIRDNQKNFTFSVTMEELTETDTDIYWCGIEKSGTDLGVEVKVTIDPAPAETKDPPTVT 136
Query: 523 A 525
+
Sbjct: 137 S 137
>ref|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precursor (CMRF-35) [Canis
familiaris].
Length = 224
Score = 59.3 bits (142), Expect = 5e-09
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 330
S + GP VS G S+S+RC Y R KYWC K C ++ + +
Sbjct: 23 SSLRGPDSVSGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTESQREV 76
Query: 331 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
KGR ++ + P + TF + + LT GD+G YKCG+ +F V + V+ G
Sbjct: 77 TKGRVSIRDHPADLTFTVTLKSLTEGDAGTYKCGIDTLWVDPTFSVVVSVTPG 129
>ref|XP_848904.1| PREDICTED: similar to triggering receptor expressed on myeloid
cells 4 [Canis familiaris].
Length = 480
Score = 58.5 bits (140), Expect = 9e-09
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Frame = +1
Query: 142 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEG 315
+VS + GP+++S EG +VS++C Y + +S KYWCR C+ I +
Sbjct: 157 MVSGYRAMVGPKEISGFEGDTVSLQCTY-REELKTYS-KYWCRERGIFVSHCSNTIYARE 214
Query: 316 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
+ +GR ++ + P+ T + + LT D+G Y CG+ R SF VSL V GP
Sbjct: 215 DGQETTEGRVSIQDSPQTLTLSVTLRKLTLQDAGKYFCGVSKLGRDESFLVSLLVFPGP 273
>ref|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precursor (CMRF35-H9)
(CMRF-35-H9) (Inhibitory receptor protein 60) (IRp60)
(IRC1/IRC2) (NK inhibitory receptor) [Canis familiaris].
Length = 335
Score = 58.2 bits (139), Expect = 1e-08
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +1
Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 330
S + GP V G S+S+RC Y R KYWC K C ++ + +
Sbjct: 46 SSLRGPDSVLGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTKSQREV 99
Query: 331 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDV 510
KGR ++ + P + TF + + +LT GD+G YKCG+ I +F V + V+
Sbjct: 100 TKGRVSIRDHPADLTFTVTLKNLTEGDAGTYKCGIDILWVDPTFSVVVSVNPATMSTSSA 159
Query: 511 HVYTADLGSTVT 546
+ + ST+T
Sbjct: 160 SITVTQI-STIT 170
>ref|XP_535568.1| PREDICTED: similar to Junctional adhesion molecule B precursor
(JAMA-A) (Junctional adhesion molecule 2) (Vascular
endothelial junction-associated molecule) (VE-JAM)
[Canis familiaris].
Length = 298
Score = 53.5 bits (127), Expect = 3e-07
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
G Q V++ E V + C YP +++ SR W ++G R + + + + D+K RA
Sbjct: 34 GHQVVTATEYQEVILACKYPKKTIS--SRLEWKKLG---RSVSFVYYQQALQGDFKDRAE 88
Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFD---VSLEVSQGPGQIGDVHV 516
+ +F + I ++TR D+G Y+C + S +G + + V+LEV P
Sbjct: 89 MIDFS------IRIKNVTRNDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPACEVP 142
Query: 517 YTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTN 696
+A G+ V + C K N P+ + K G + + N L + TN ++ +
Sbjct: 143 NSALSGTVVELRCQDKEGN-PAPEYTWFKDG----VPLSENPKLGSQSTNSSYTMNTKSG 197
Query: 697 QLVFSFVINRIQLRDAGIYICQA 765
L F N + D+G Y C+A
Sbjct: 198 TLQF----NTVSKLDSGEYSCEA 216
>ref|XP_851243.1| PREDICTED: similar to triggering receptor expressed on myeloid
cells-like 4 [Canis familiaris].
Length = 306
Score = 52.4 bits (124), Expect = 6e-07
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANL 351
P+ + +EG ++S++C Y + ++ S K WCR + CT L S +K ++
Sbjct: 26 PELLRKLEGETISVKCLYQSWQDSK-SVKAWCRQVSARTCTVLASYPRIQGMQWKPGNSI 84
Query: 352 TNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSF-DVSLEVSQGP 492
++ G F++ + L DSG Y CG+ SS L++ ++ L VS P
Sbjct: 85 QDWVRLGYFIVTMTKLKVEDSGFYSCGIYKSSEILTYRNIHLVVSPAP 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,934,380
Number of extensions: 1200505
Number of successful extensions: 4388
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4350
Number of HSP's successfully gapped: 12
Length of query: 316
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 213
Effective length of database: 15,440,896
Effective search space: 3288910848
Effective search space used: 3288910848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002635.2| polymeric immunoglobulin receptor precursor [Ho... 418 e-117
Alignment gi|NP_001164102.1| high affinity immunoglobulin alpha and immun... 96 4e-20
Alignment gi|NP_114418.2| high affinity immunoglobulin alpha and immunogl... 92 9e-19
Alignment gi|NP_001116451.1| high affinity immunoglobulin alpha and immun... 92 9e-19
Alignment gi|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform ... 72 1e-12
Alignment gi|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [... 72 1e-12
Alignment gi|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Hom... 61 1e-09
Alignment gi|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [... 61 1e-09
Alignment gi|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [... 59 8e-09
Alignment gi|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [... 57 2e-08
>ref|NP_002635.2| polymeric immunoglobulin receptor precursor [Homo sapiens].
Length = 764
Score = 418 bits (1074), Expect = e-117
Identities = 202/287 (70%), Positives = 238/287 (82%), Gaps = 4/287 (1%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M F CLLA+FP +S KSPIFGP++V+SVEG+SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGA 60
Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
+G C TLISSEGY+S Y GRANLTNFPENGTFV++I L++ DSG YKCGLGI+SRGLS
Sbjct: 61 RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS 120
Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
FDVSLEVSQGPG + D VYT DLG TVTINCPFK+ENAQK KS+YK++G VLVIDS+
Sbjct: 121 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 180
Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESS----ADLQVLKP 807
GY+N N+T R L IQGT QL+FS VIN+++L DAG Y+CQAGD+ +S ADLQVLKP
Sbjct: 181 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 240
Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
EPEL+Y DLRGSVTF CALG E+ANVAKFLC+ +G+ C+VV+NTLG
Sbjct: 241 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLG 287
Score = 72.8 bits (177), Expect = 4e-13
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
Frame = +1
Query: 172 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI-GAK-GRCTTLISSEGYISKDYKGRA 345
P V V G SV++ C P S KYWC GA+ GRC L+ SEG++ Y+GR
Sbjct: 356 PTVVKGVAGGSVAVLC--PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 413
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 525
+L P NGTF + + LT D+G Y C L V +++ +G + TA
Sbjct: 414 SLLEEPGNGTFTVILNQLTSRDAGFYWC-LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTA 472
Query: 526 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 699
LG T+ + C P K + +K + G + L G ++A ++ ++
Sbjct: 473 VLGETLKVPCHFPCKFSSYEKYWCKWNNTG-CQALPSQDEG------PSKAFVNCDENSR 525
Query: 700 LVFSFVINRIQLRDAGIYIC 759
LV S +N + D G Y C
Sbjct: 526 LV-SLTLNLVTRADEGWYWC 544
Score = 58.5 bits (140), Expect = 8e-09
Identities = 52/229 (22%), Positives = 105/229 (45%), Gaps = 10/229 (4%)
Frame = +1
Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
K+ CR + C ++++ G + ++GR L ++G+F + I L + D+G Y CG
Sbjct: 268 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 327
Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPK--SVY 597
G G L V++ V G +V + CP+ + ++ K ++
Sbjct: 328 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGGSVAVLCPYNRKESKSIKYWCLW 387
Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
+ R L++DS G++ + R L ++ F+ ++N++ RDAG Y C +
Sbjct: 388 EGAQNGRCPLLVDSEGWVKAQYEGRLSL-LEEPGNGTFTVILNQLTSRDAGFYWCLTNGD 446
Query: 775 ---ESSADLQVLKPEPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKN 912
++ ++++++ EP L + G+VT LG+ + F C+ +
Sbjct: 447 TLWRTTVEIKIIEGEPNL---KVPGNVT--AVLGETLKVPCHFPCKFSS 490
>ref|NP_001164102.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform b [Homo sapiens].
Length = 577
Score = 96.3 bits (238), Expect = 4e-20
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S GP
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTISAGP 219
>ref|NP_114418.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform a [Homo sapiens].
Length = 265
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216
>ref|NP_001116451.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform a [Homo sapiens].
Length = 265
Score = 91.7 bits (226), Expect = 9e-19
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 345
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216
>ref|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform c [Homo sapiens].
Length = 306
Score = 71.6 bits (174), Expect = 1e-12
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
G SV+I+C P H R Y CR + G C T++S+ +I +YKGR L +P
Sbjct: 30 GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85
Query: 373 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
F++++ LT DSG+Y CG G+++ RG + V+L V
Sbjct: 86 LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122
>ref|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [Homo sapiens].
Length = 390
Score = 71.6 bits (174), Expect = 1e-12
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 196 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 372
G SV+I+C P H R Y CR + G C T++S+ +I +YKGR L +P
Sbjct: 30 GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85
Query: 373 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 480
F++++ LT DSG+Y CG G+++ RG + V+L V
Sbjct: 86 LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122
>ref|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Homo sapiens].
Length = 332
Score = 61.2 bits (147), Expect = 1e-09
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
++ + + + ++ + +LT D+G Y CG+ S +SL V GP
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128
>ref|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [Homo sapiens].
Length = 307
Score = 61.2 bits (147), Expect = 1e-09
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
++ + + + ++ + +LT D+G Y CG+ S +SL V GP
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128
>ref|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [Homo sapiens].
Length = 233
Score = 58.5 bits (140), Expect = 8e-09
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
++ + + + ++ + +LT D+G Y CG+ S +SL V G
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPG 127
>ref|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [Homo sapiens].
Length = 273
Score = 57.4 bits (137), Expect = 2e-08
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 342
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 343 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
++ + + + ++ + +LT D+G Y CG+
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGV 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,209,890
Number of extensions: 1182024
Number of successful extensions: 4669
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4611
Number of HSP's successfully gapped: 22
Length of query: 316
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 214
Effective length of database: 14,934,836
Effective search space: 3196054904
Effective search space used: 3196054904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035212.2| polymeric immunoglobulin receptor precursor [Mu... 345 2e-95
Alignment gi|NP_001164103.1| high affinity immunoglobulin alpha and immun... 108 6e-24
Alignment gi|NP_659209.2| high affinity immunoglobulin alpha and immunogl... 108 6e-24
Alignment gi|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus muscul... 63 3e-10
Alignment gi|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus muscul... 63 3e-10
Alignment gi|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus]. 63 3e-10
Alignment gi|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus muscul... 62 7e-10
Alignment gi|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [... 57 2e-08
Alignment gi|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [... 57 2e-08
Alignment gi|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus... 57 2e-08
>ref|NP_035212.2| polymeric immunoglobulin receptor precursor [Mus musculus].
Length = 771
Score = 345 bits (886), Expect = 2e-95
Identities = 174/287 (60%), Positives = 213/287 (74%), Gaps = 4/287 (1%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
M + + L+ +F VS KSPIFGPQ+VSS+EG SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MRLYLFTLLVTVFSGVSTKSPIFGPQEVSSIEGDSVSITCYYPDTSVNRHTRKYWCRQGA 60
Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
G CTTLISS GY+SK+Y GRANL NFPEN TFV++I LT+ D+G YKCGLG S+RGLS
Sbjct: 61 SGMCTTLISSNGYLSKEYSGRANLINFPENNTFVINIEQLTQDDTGSYKCGLGTSNRGLS 120
Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
FDVSLEVSQ P D HVYT D+G VTI CPFK ENA KS+ KK Q LVIDS
Sbjct: 121 FDVSLEVSQVPELPSDTHVYTKDIGRNVTIECPFKRENAPSKKSLCKKTNQSCELVIDST 180
Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 807
+N ++ RA L ++GT+ VF I+ + DAG+YICQAG+ ++ + DLQVL P
Sbjct: 181 EKVNPSYIGRAKLFMKGTDLTVFYVNISHLTHNDAGLYICQAGEGPSADKKNVDLQVLAP 240
Query: 808 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
EPEL+Y DLR SVTF+C LG+E+AN AK+LC++ N +TC+V+INTLG
Sbjct: 241 EPELLYKDLRSSVTFECDLGREVANEAKYLCRM-NKETCDVIINTLG 286
Score = 71.2 bits (173), Expect = 1e-12
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Frame = +1
Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
V V G SV+I C P S KYWCR G C L+ ++ + ++Y+GR L
Sbjct: 358 VKGVTGGSVAIAC--PYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALF 415
Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG---PGQIGDVHVYTA 525
+ P NGT+ + + LT D+G Y C SR + + L+V++ P TA
Sbjct: 416 DQPGNGTYTVILNQLTTEDAGFYWCLTNGDSRWRT-TIELQVAEATREPNLEVTPQNATA 474
Query: 526 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 699
LG T T++C P K + +K + G +L G ++ +S ++Q
Sbjct: 475 VLGETFTVSCHYPCKFYSQEKYWCKWSNKG-CHILPSHDEG------ARQSSVSCDQSSQ 527
Query: 700 LVFSFVINRIQLRDAGIYIC 759
LV S +N + D G Y C
Sbjct: 528 LV-SMTLNPVSKEDEGWYWC 546
Score = 57.8 bits (138), Expect = 1e-08
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 18/263 (6%)
Frame = +1
Query: 199 SSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTF 378
SSV+ C N KY CR+ K C +I++ G D++GR +T +NG F
Sbjct: 251 SSVTFECDLGREVANE--AKYLCRMN-KETCDVIINTLGKRDPDFEGRILITPKDDNGRF 307
Query: 379 VMDIGHLTRGDSGLYKCGL---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVT 546
+ I L + D+G Y+CG G+ G L V++ V G +V
Sbjct: 308 SVLITGLRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVKGVTGGSVA 367
Query: 547 INCPFKSENAQKPKSVYKKLGQIR---VLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFV 717
I CP+ + + K + G +++ + + + R L Q N ++ +
Sbjct: 368 IACPYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGNG-TYTVI 426
Query: 718 INRIQLRDAGIYICQAGDE---ESSADLQV--------LKPEPELIYGDLRGSVTFDCAL 864
+N++ DAG Y C + ++ +LQV L+ P+ L + T C
Sbjct: 427 LNQLTTEDAGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHY 486
Query: 865 GQEMANVAKFLCQLKNGKTCNVV 933
+ + K+ C+ N K C+++
Sbjct: 487 PCKFYSQEKYWCKWSN-KGCHIL 508
>ref|NP_001164103.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform 1 precursor [Mus musculus].
Length = 591
Score = 108 bits (270), Expect = 6e-24
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 345
GP+ V+ G +V+I C+Y +SVNRH RKYWCR+G+ C T++S+ Y DY+GRA
Sbjct: 142 GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 201
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
LT+ P++G FV+ + L+ GD GLY+CG+G + L F V+L VS GP
Sbjct: 202 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 250
>ref|NP_659209.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform 2 precursor [Mus musculus].
Length = 535
Score = 108 bits (270), Expect = 6e-24
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 345
GP+ V+ G +V+I C+Y +SVNRH RKYWCR+G+ C T++S+ Y DY+GRA
Sbjct: 86 GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 145
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
LT+ P++G FV+ + L+ GD GLY+CG+G + L F V+L VS GP
Sbjct: 146 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 194
>ref|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus musculus].
Length = 331
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus musculus].
Length = 415
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus].
Length = 287
Score = 63.2 bits (152), Expect = 3e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 489
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus musculus].
Length = 371
Score = 62.0 bits (149), Expect = 7e-10
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 333
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEV 480
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIV 123
>ref|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [Mus musculus].
Length = 337
Score = 57.4 bits (137), Expect = 2e-08
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +1
Query: 154 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 333
+ P+ GP++VS E S++++C Y TS + +KYWC+ + C TL+ ++
Sbjct: 20 EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVH 513
K R ++ + + F + + L D+G+Y C GI+ GL + V+ GP +
Sbjct: 78 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGPAIQVPIT 135
Query: 514 VYT-ADLGSTVTI 549
V T + ST TI
Sbjct: 136 VPTMPPITSTTTI 148
>ref|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [Mus musculus].
Length = 422
Score = 57.4 bits (137), Expect = 2e-08
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Frame = +1
Query: 112 FYACLLAIFPVVSMKSPIFGPQDVSSVE-GSSVSIRCYYPATSVNRHSRKYWCRIGAK-G 285
F+ LL PV + P+ +VE G S+ I C P H R Y CR AK G
Sbjct: 3 FWLWLLYFLPVSGALRVL--PEVQLNVEWGGSIIIECPLPQL----HVRMYLCRQMAKPG 56
Query: 286 RCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSF 462
C+T++S+ ++ K+Y+ R LT + F++++ LT D G+Y CG+G+ + +G +
Sbjct: 57 ICSTVVSNT-FVKKEYERRVTLTPCLDKKLFLVEMTQLTENDDGIYACGVGMKTDKGKTQ 115
Query: 463 DVSLEV 480
++L V
Sbjct: 116 KITLNV 121
>ref|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus musculus].
Length = 330
Score = 57.0 bits (136), Expect = 2e-08
Identities = 33/113 (29%), Positives = 59/113 (52%)
Frame = +1
Query: 154 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 333
+ P+ GP++VS E S++++C Y TS + +KYWC+ + C TL+ ++
Sbjct: 20 EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77
Query: 334 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 492
K R ++ + + F + + L D+G+Y C GI+ GL + V+ GP
Sbjct: 78 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGP 128
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,007,991
Number of extensions: 983421
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3828
Number of HSP's successfully gapped: 19
Length of query: 316
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 215
Effective length of database: 12,583,923
Effective search space: 2705543445
Effective search space used: 2705543445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa]. 575 e-164
Alignment gi|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor... 310 7e-85
Alignment gi|XP_003357468.1| PREDICTED: high affinity immunoglobulin alph... 92 5e-19
Alignment gi|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor... 70 2e-12
Alignment gi|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule... 66 2e-11
Alignment gi|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus ... 56 3e-08
Alignment gi|XP_003361575.1| PREDICTED: junctional adhesion molecule B-li... 51 1e-06
Alignment gi|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus ... 50 2e-06
Alignment gi|XP_001924658.2| PREDICTED: hypothetical protein LOC100153074... 49 4e-06
>ref|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa].
Length = 758
Score = 575 bits (1481), Expect = e-164
Identities = 283/283 (100%), Positives = 283/283 (100%)
Frame = +1
Query: 100 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 279
MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA
Sbjct: 1 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 60
Query: 280 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 459
KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS
Sbjct: 61 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 120
Query: 460 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 639
FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN
Sbjct: 121 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 180
Query: 640 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 819
GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL
Sbjct: 181 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 240
Query: 820 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG
Sbjct: 241 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 283
Score = 80.5 bits (197), Expect = 1e-15
Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 4/201 (1%)
Frame = +1
Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
V V G SV++ C Y N S KYWCR GRC L+ S G +++ Y+GR L
Sbjct: 354 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 411
Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 534
P NGTF + + LT D+G Y C SR S V L++ +G + TA +G
Sbjct: 412 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 470
Query: 535 STVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 708
T+ ++C P K + QK + G R L G ++A ++ +Q++
Sbjct: 471 ETLKLSCHFPCKFYSYQKYWCKWSNTG-CRALPSQDEG------QSQAFVNCDKKSQII- 522
Query: 709 SFVINRIQLRDAGIYICQAGD 771
S +N ++ D G Y C D
Sbjct: 523 SLNLNPVRKEDEGWYWCGVKD 543
Score = 59.3 bits (142), Expect = 3e-09
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 10/198 (5%)
Frame = +1
Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
K+ C++ C +I++ G ++D++GR LT EN F + I L + D+G Y CG
Sbjct: 264 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 322
Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 597
G G L +++ V +G +V + CP+ K N+ K +
Sbjct: 323 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 382
Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
++ R +++S+G +N + R L + N F+ ++N++ RDAG Y C ++
Sbjct: 383 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 441
Query: 775 ---ESSADLQVLKPEPEL 819
S+ +L++++ EP L
Sbjct: 442 SRWRSTVELKIVEGEPNL 459
>ref|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor-like, partial [Sus
scrofa].
Length = 405
Score = 310 bits (794), Expect = 7e-85
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +1
Query: 490 PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 669
PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR
Sbjct: 1 PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 60
Query: 670 AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 849
AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT
Sbjct: 61 AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 120
Query: 850 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 948
FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG
Sbjct: 121 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLG 153
Score = 76.6 bits (187), Expect = 2e-14
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = +1
Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 354
V V G SV++ C Y N S KYWCR GRC L+ S G +++ Y+GR L
Sbjct: 224 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 281
Query: 355 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 534
P NGTF + + LT D+G Y C SR S V L++ +G + TA +G
Sbjct: 282 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 340
Query: 535 STVTINCPF 561
T+ ++C F
Sbjct: 341 ETLKLSCHF 349
Score = 62.0 bits (149), Expect = 5e-10
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Frame = +1
Query: 256 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 435
K+ C++ C +I++ G ++D++GR LT EN F + I L + D+G Y CG
Sbjct: 134 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 192
Query: 436 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 597
G G L +++ V +G +V + CP+ K N+ K +
Sbjct: 193 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 252
Query: 598 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 774
++ R +++S+G +N + R L + N F+ ++N++ RDAG Y C ++
Sbjct: 253 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 311
Query: 775 ---ESSADLQVLKPEPEL---------IYGDLRGSVTFDCALGQEMAN 882
S+ +L++++ EP L + L+ S F C +E+AN
Sbjct: 312 SRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCIRWKELAN 359
>ref|XP_003357468.1| PREDICTED: high affinity immunoglobulin alpha and immunoglobulin mu
Fc receptor-like [Sus scrofa].
Length = 462
Score = 91.7 bits (226), Expect = 5e-19
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Frame = +1
Query: 70 GRHSLEEPQA---MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSV 240
G + P+A M + CLL + + GP+ VS G +V+I+C Y +
Sbjct: 10 GEQKVTNPRAGWKMPFLLFLCLL------QAANALKGPRLVSGEPGGAVTIQCKYGPLLI 63
Query: 241 NRHSRKYWCRIG-AKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSG 417
+ H RKYWCR+ + G C T++S+ Y Y GR L +FP+ G FV+ + L+ D G
Sbjct: 64 SSHQRKYWCRLNPSTGLCHTIVSTNRYTRPYYHGRVALEDFPKKGLFVVRLCQLSPEDVG 123
Query: 418 LYKCGLGISSRGLSFDVSLEVSQGPGQI 501
Y+CG+G ++ L F ++L VS G G +
Sbjct: 124 YYRCGIGNNNNLLFFSMNLTVSAGGGWV 151
>ref|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor-like [Sus scrofa].
Length = 581
Score = 69.7 bits (169), Expect = 2e-12
Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 6/264 (2%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 19 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 76
Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
+ + EN TF + L D+G+Y CG+ + VS+ V GP + +
Sbjct: 77 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 131
Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
GS + + C + E+ K G ++LV + + R +SI+ +
Sbjct: 132 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 187
Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELIYGDLRGSVTFDCALGQ 870
F+ ++L DAGIY C + G + + + P P+ + G RGS+ C
Sbjct: 188 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRGQERGSLAVQCRYTP 247
Query: 871 EMANVAKFLCQLKNGKTCNVVINT 942
+ K+ C+ + C +++ T
Sbjct: 248 GWESHGKWWCRGADWGNCKILVQT 271
Score = 63.9 bits (154), Expect = 1e-10
Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 12/270 (4%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 123 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 180
Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
+ + EN TF + L D+G+Y CG+ + VS+ V GP + +
Sbjct: 181 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 235
Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
GS + + C + E+ K G ++LV + + R +SI+ +
Sbjct: 236 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 291
Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPE------PELIYGDLRGSVTF 852
F+ ++L DAGIY C + G + + + P P+ + G RGS+
Sbjct: 292 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQERGSLAV 351
Query: 853 DCALGQEMANVAKFLCQLKNGKTCNVVINT 942
C + K+ C+ + +C +++ T
Sbjct: 352 QCRYTPGWESHGKWWCRGADWDSCKILVQT 381
Score = 52.0 bits (123), Expect = 5e-07
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 6/224 (2%)
Frame = +1
Query: 169 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 348
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 227 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 284
Query: 349 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 528
+ + EN TF + L D+G+Y CG+ + VS+ V G +
Sbjct: 285 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQ 344
Query: 529 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 699
++ + C + E+ K ++LV + + R +SI+ +
Sbjct: 345 ERGSLAVQCRYTPGWESHGKWWCRGADWDSCKILVQTT---ASEPEVKRDRVSIRDDREN 401
Query: 700 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELI 822
F+ ++L DAG+Y C + G + + + P P +
Sbjct: 402 RTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTV 445
Score = 48.5 bits (114), Expect = 5e-06
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Frame = +1
Query: 157 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYK 336
SP+ GP+ V E S++++C Y T K+WCR C L+ + + +
Sbjct: 333 SPVTGPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWDSCKILVQTTASEPEVKR 390
Query: 337 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQI----G 504
R ++ + EN TF + L D+G+Y CG+ V + V P +
Sbjct: 391 DRVSIRDDRENRTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTVPTTTS 450
Query: 505 DVHVYTADLGS 537
++ +TA + S
Sbjct: 451 AINTFTAPVTS 461
>ref|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule 3-like [Sus scrofa].
Length = 420
Score = 66.2 bits (160), Expect = 2e-11
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRANLTN 357
+ V G S+ I C P T V R Y CR A G CTT++S++ ++ +++K R L
Sbjct: 25 LEGVLGGSIVIECPLPETPV----RLYLCRTMALSGTCTTVVSNKNFVLEEFKHRVTLEL 80
Query: 358 FPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFDVSLEV 480
P+ F++++ LT DSG+Y CG+G+ ++RG + V+L V
Sbjct: 81 CPDRKLFLVEVTELTERDSGVYACGVGMNTNRGKTQQVTLTV 122
>ref|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus scrofa].
Length = 396
Score = 55.8 bits (133), Expect = 3e-08
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +1
Query: 115 YACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAK-GR 288
+ACL V+ + GP+++S G +VS++C Y ++ H RKYWCR IG R
Sbjct: 8 WACL-----VLPGYGTLVGPKEISGFVGDTVSLQCTY-GEALKTH-RKYWCRKIGYLIAR 60
Query: 289 CTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDV 468
C+ + S Y +GR ++ + P F + + +LT D G Y CG+ SF V
Sbjct: 61 CSGTVFSGEY---GQEGRVSVHDSPRELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSV 117
Query: 469 SLEV-SQGPGQIGDVHVYTADLGST 540
SL V PG + V T LG T
Sbjct: 118 SLHVFPASPGL--HLTVSTTKLGKT 140
>ref|XP_003361575.1| PREDICTED: junctional adhesion molecule B-like [Sus scrofa].
Length = 298
Score = 50.8 bits (120), Expect = 1e-06
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Frame = +1
Query: 181 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF 360
V+++E V + C YP +V+ SR W ++G R + + + + +K RA L +F
Sbjct: 38 VTAIEYQEVILACKYPKKTVS--SRLEWKKLG---RGISFVYYQQALQGAFKDRAELIDF 92
Query: 361 PENGTFVMDIGHLTRGDSGLYKCGLGISS---RGLSFD-VSLEVSQGPGQIGDVHVYTAD 528
+ I ++TR D+G Y+C + S + L+ D V+LEV P +A
Sbjct: 93 S------IRIKNVTRNDAGKYRCEISAPSEQGQNLAEDTVTLEVLVAPAVPSCEVPSSAL 146
Query: 529 LGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 708
G+TV + C K N P+ + K G + + N L+ TN ++ + L F
Sbjct: 147 SGTTVELRCQDKEGN-PAPEYTWFKDG----IRLSGNPRLDAQSTNSSYTMNVKSGSLQF 201
Query: 709 SFVINRIQLRDAGIYICQA 765
N + D+G Y C+A
Sbjct: 202 ----NAVSKLDSGEYSCEA 216
>ref|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus scrofa].
Length = 292
Score = 50.1 bits (118), Expect = 2e-06
Identities = 33/128 (25%), Positives = 55/128 (42%)
Frame = +1
Query: 124 LLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLI 303
LL + +S SP+ GP+ + E S++++C Y T K+WCR C L+
Sbjct: 6 LLPLLFQLSGSSPVTGPKALRGQERGSLTVQCRY--TPGWESHGKWWCRGADWSSCKILV 63
Query: 304 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 483
+ + + R ++ + EN T + L D+G+Y CG+ V + V
Sbjct: 64 QTTASEPEVKRDRVSIRDDRENRTITVTTEQLRLDDAGIYWCGIARVGTDHGAQVRVTVD 123
Query: 484 QGPGQIGD 507
P GD
Sbjct: 124 PAPVTSGD 131
>ref|XP_001924658.2| PREDICTED: hypothetical protein LOC100153074 [Sus scrofa].
Length = 499
Score = 48.9 bits (115), Expect = 4e-06
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Frame = +1
Query: 49 NRARRWSGRHSLEEPQ---------------AMTRFFYACLLAIFPVVSMKSPIFGPQDV 183
+RAR W R L P A+ + A + P++ + P+ G +
Sbjct: 38 DRARCWKNRAQLLVPSPGPPPPTPAMSSPTSALEKGLVAWKAPLPPLLLLLLPLSGSWAL 97
Query: 184 S------SVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRA 345
S SV G ++S+RC YP + + RK WC+ ++ CT L++S R
Sbjct: 98 SKAHHLQSVAGQTLSLRCQYPPKN-GPYERKGWCKEVSELLCTGLVTSSRPHMLAQASRF 156
Query: 346 NLTNFPENGTFVMDIGHLTRGDSGLYKC 429
++ + P +G FV+ + L D+G Y C
Sbjct: 157 SIWDSPSSGFFVVTMTGLREEDTGHYWC 184
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,334,578
Number of extensions: 755528
Number of successful extensions: 2878
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2832
Number of HSP's successfully gapped: 16
Length of query: 316
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,879,129
Effective search space: 1926770993
Effective search space used: 1926770993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002643
(948 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 918 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 918 bits (463), Expect = 0.0
Identities = 463/463 (100%)
Strand = Plus / Plus
Query: 486 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889670 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73889729
Query: 546 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889730 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73889789
Query: 606 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889790 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73889849
Query: 666 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889850 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73889909
Query: 726 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889910 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73889969
Query: 786 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889970 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73890029
Query: 846 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890030 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73890089
Query: 906 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 948
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890090 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 73890132
Score = 918 bits (463), Expect = 0.0
Identities = 463/463 (100%)
Strand = Plus / Plus
Query: 486 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971214 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73971273
Query: 546 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971274 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73971333
Query: 606 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971334 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73971393
Query: 666 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971394 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73971453
Query: 726 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971454 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73971513
Query: 786 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971514 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73971573
Query: 846 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971574 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73971633
Query: 906 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 948
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971634 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctgggg 73971676
Score = 686 bits (346), Expect = 0.0
Identities = 349/350 (99%)
Strand = Plus / Plus
Query: 140 cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73969943 cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 73970002
Query: 200 gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970003 gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 73970062
Query: 260 actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970063 actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 73970122
Query: 320 tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970123 tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 73970182
Query: 380 tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970183 tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 73970242
Query: 440 ttagcagccgaggcctgtcttttgacgtgagcctggaggtcagccaaggt 489
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 73970243 ttagcagccgaggcctgtcttttgatgtgagcctggaggtcagccaaggt 73970292
Score = 266 bits (134), Expect = 2e-68
Identities = 140/142 (98%)
Strand = Plus / Plus
Query: 1 gtcttggaagacaaggcatttcatcacctcgtgctattgtctttcagcaaccgcgcaaga 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 73968604 gtcttggaagacaaggcatttcatcacctcgtgctattgtctttcagcaaccacgcaaga 73968663
Query: 61 aggtggtctgggcggcacagccttgaggagccacaagccatgacacgcttcttctatgcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 73968664 aggtggtctgggcggcacagccttgaggagccacaagccatgacacgcttcttctacgcc 73968723
Query: 121 tgcctgctggctatcttcccag 142
||||||||||||||||||||||
Sbjct: 73968724 tgcctgctggctatcttcccag 73968745
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,805,477
Number of extensions: 137
Number of successful extensions: 137
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 4
Length of query: 948
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 927
Effective length of database: 2,808,413,156
Effective search space: 2603398995612
Effective search space used: 2603398995612
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)