Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776568.1| polymeric immunoglobulin receptor precursor [Bo... 573 e-163
Alignment gi|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule... 110 2e-24
Alignment gi|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule... 110 2e-24
Alignment gi|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule... 71 2e-12
Alignment gi|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 ... 71 2e-12
Alignment gi|XP_002696083.1| PREDICTED: CD300 molecule-like family member... 62 2e-09
Alignment gi|XP_002684488.1| PREDICTED: CD300 molecule-like family member... 62 2e-09
Alignment gi|XP_872277.3| PREDICTED: CD300 molecule-like family member g ... 56 7e-08
Alignment gi|XP_002696260.1| PREDICTED: CD300 molecule-like family member... 56 8e-08
Alignment gi|XP_001256397.2| PREDICTED: immune receptor expressed on myel... 55 1e-07
>ref|NP_776568.1| polymeric immunoglobulin receptor precursor [Bos taurus].
Length = 757
Score = 573 bits (1477), Expect = e-163
Identities = 275/398 (69%), Positives = 320/398 (80%), Gaps = 4/398 (1%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M+R F ACLLAIFPVVSMKSPIFGP++VSSVEG SVSI+CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MSRLFLACLLAIFPVVSMKSPIFGPEEVSSVEGRSVSIKCYYPPTSVNRHTRKYWCRQGA 60
Query: 361 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 540
+GRCTTLISSEGY+S DY GRANLTNFPE+GTFV+DI HLT DSG YKCGLGISSRGL+
Sbjct: 61 QGRCTTLISSEGYVSDDYVGRANLTNFPESGTFVVDISHLTHKDSGRYKCGLGISSRGLN 120
Query: 541 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 720
FDVSLEVSQ P Q HVYT DLG TVTINCPF N++K KS+ KK Q V+DS
Sbjct: 121 FDVSLEVSQDPAQASHAHVYTIDLGRTVTINCPFTRANSEKRKSLCKKTIQDCFQVVDST 180
Query: 721 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 888
GY++N++ +RAH+SI GTN LVFS VINR++L DAG+Y+CQAGD ++ + DLQVL+P
Sbjct: 181 GYVSNSYKDRAHISILGTNTLVFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEP 240
Query: 889 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLT 1068
EPEL+YGDLR SVTFDC+LG E+ANV KFLCQ KNG CNVVINTLGKKAQDF+GRI+
Sbjct: 241 EPELVYGDLRSSVTFDCSLGPEVANVPKFLCQKKNGGACNVVINTLGKKAQDFQGRIVSV 300
Query: 1069 PKENSHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXX 1248
PK+N FSVHIT LRKEDAG Y+CGA P+GEP++GWPVQAWQLF+NE+T IP
Sbjct: 301 PKDNGVFSVHITSLRKEDAGRYVCGAQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKG 360
Query: 1249 XXXXXXAVTWPLHPKETNSLKYWCRWEENENGRRPQLV 1362
V+ P +PK+ NS KYWC WEE +NGR P+LV
Sbjct: 361 VRGGSVTVSCPYNPKDANSAKYWCHWEEAQNGRCPRLV 398
Score = 113 bits (283), Expect = 3e-25
Identities = 105/369 (28%), Positives = 168/369 (45%), Gaps = 19/369 (5%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG- 453
G +V+I C P T N RK C+ + C ++ S GY+S YK RA+++ N
Sbjct: 145 GRTVTINC--PFTRANSEKRKSLCKKTIQD-CFQVVDSTGYVSNSYKDRAHISILGTNTL 201
Query: 454 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 633
F + I + D+G+Y C G ++ ++ L+V + ++ VY DL S+VT +
Sbjct: 202 VFSVVINRVKLSDAGMYVCQAGDDAKADKINIDLQVLEPEPEL----VY-GDLRSSVTFD 256
Query: 634 CPFKSENAQKPKSV-YKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 810
C E A PK + KK G +VI++ G +F R +S+ N VFS I +
Sbjct: 257 CSLGPEVANVPKFLCQKKNGGACNVVINTLGKKAQDFQGRI-VSVPKDNG-VFSVHITSL 314
Query: 811 QLRDAGIYICQAGDEESSAD-------------LQVLKPEPELIYGDLRGSVTFDCALGQ 951
+ DAG Y+C A E D + P ++ G GSVT C
Sbjct: 315 RKEDAGRYVCGAQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNP 374
Query: 952 EMANVAKFLC---QLKNGKTCNVVINTLGKKAQDFEGR-ILLTPKENSHFSVHITGLRKE 1119
+ AN AK+ C + +NG+ C ++ + G + +EGR +LLT N ++V + L +
Sbjct: 375 KDANSAKYWCHWEEAQNGR-CPRLVESRGLMKEQYEGRLVLLTEPGNGTYTVILNQLTDQ 433
Query: 1120 DAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXXXXAVTWPLHPKET 1299
DAG Y C DG+ + V+ ++ E ++ P + +P K
Sbjct: 434 DAGFYWCVT--DGDTRWISTVEL-KVVQGEPSLKVPKNVTAWLGEPLKLSCHFPC--KFY 488
Query: 1300 NSLKYWCRW 1326
+ KYWC+W
Sbjct: 489 SFEKYWCKW 497
Score = 75.1 bits (183), Expect = 1e-13
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Frame = +1
Query: 253 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRA 426
P V V G SV++ C Y N S KYWC GRC L+ S G + + Y+GR
Sbjct: 355 PSVVKGVRGGSVTVSCPYNPKDAN--SAKYWCHWEEAQNGRCPRLVESRGLMKEQYEGRL 412
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 606
L P NGT+ + + LT D+G Y C +R +S V L+V QG + TA
Sbjct: 413 VLLTEPGNGTYTVILNQLTDQDAGFYWCVTDGDTRWIS-TVELKVVQGEPSLKVPKNVTA 471
Query: 607 DLGSTVTINCPF 642
LG + ++C F
Sbjct: 472 WLGEPLKLSCHF 483
Score = 67.8 bits (164), Expect = 2e-11
Identities = 70/286 (24%), Positives = 131/286 (45%), Gaps = 17/286 (5%)
Frame = +1
Query: 337 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFP-ENGTFVMDIGHLTRGDSGLYKCG 513
K+ C+ G C +I++ G ++D++GR + + P +NG F + I L + D+G Y CG
Sbjct: 268 KFLCQKKNGGACNVVINTLGKKAQDFQGR--IVSVPKDNGVFSVHITSLRKEDAGRYVCG 325
Query: 514 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPK--SV 675
G G L V++ V G +VT++CP+ ++A K
Sbjct: 326 AQPEGEPQDGWPVQAWQLFVNEETAIPASPSVVKGVRGGSVTVSCPYNPKDANSAKYWCH 385
Query: 676 YKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQA-G 849
+++ R +++S G + + R L + N ++ ++N++ +DAG Y C G
Sbjct: 386 WEEAQNGRCPRLVESRGLMKEQYEGRLVLLTEPGNG-TYTVILNQLTDQDAGFYWCVTDG 444
Query: 850 DEE--SSADLQVLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCN 1008
D S+ +L+V++ EP L + L + C + + K+ C+ N + C+
Sbjct: 445 DTRWISTVELKVVQGEPSLKVPKNVTAWLGEPLKLSCHFPCKFYSFEKYWCKWSN-RGCS 503
Query: 1009 VVINTLGKKAQDFEGRILLTPKENSHF-SVHITGLRKEDAGHYLCG 1143
+ +Q F ++ +NS S+++ + KED G Y CG
Sbjct: 504 ALPTQNDGPSQAF-----VSCDQNSQVVSLNLDTVTKEDEGWYWCG 544
>ref|XP_002693940.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 640
Score = 110 bits (276), Expect = 2e-24
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M F CLL S + GP+ VS G +V+I+C YP+ ++N H RKYWCR+G
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236
Query: 361 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 537
G C T++S+ Y Y+GR L +FP+ G FV+ + L+ D G Y+CGLG S+ L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296
Query: 538 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 663
F ++L VS PGQ + T D G +T + S A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336
>ref|XP_002701533.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 640
Score = 110 bits (276), Expect = 2e-24
Identities = 63/162 (38%), Positives = 88/162 (54%), Gaps = 1/162 (0%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M F CLL S + GP+ VS G +V+I+C YP+ ++N H RKYWCR+G
Sbjct: 183 MLVFLLMCLL------QAASALTGPRLVSGEPGGAVTIQCRYPSLAINSHLRKYWCRLGP 236
Query: 361 K-GRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGL 537
G C T++S+ Y Y+GR L +FP+ G FV+ + L+ D G Y+CGLG S+ L
Sbjct: 237 PAGVCRTVVSTNRYTHLRYRGRVALADFPKRGLFVVRLSRLSPEDEGRYRCGLGNSNNAL 296
Query: 538 SFDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQK 663
F ++L VS PGQ + T D G +T + S A K
Sbjct: 297 FFSMNLTVS--PGQGRTIPTATLDYGELITGSFEITSPPATK 336
>ref|XP_002693941.1| PREDICTED: Fas apoptotic inhibitory molecule 3-like [Bos taurus].
Length = 419
Score = 71.2 bits (173), Expect = 2e-12
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 453
G S++I C P T H R Y CR I GRCTT++SS Y+ +++K R L P+
Sbjct: 30 GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85
Query: 454 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 561
F++ + LT+ DSG+Y CG+ G + RG + ++L V
Sbjct: 86 LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122
>ref|XP_588921.3| PREDICTED: Fas apoptotic inhibitory molecule 3 [Bos taurus].
Length = 419
Score = 71.2 bits (173), Expect = 2e-12
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 453
G S++I C P T H R Y CR I GRCTT++SS Y+ +++K R L P+
Sbjct: 30 GGSITIECPLPET----HVRIYLCRTIDESGRCTTVVSSNKYVREEFKHRVTLEQCPDRN 85
Query: 454 TFVMDIGHLTRGDSGLYKCGL-GISSRGLSFDVSLEV 561
F++ + LT+ DSG+Y CG+ G + RG + ++L V
Sbjct: 86 LFLVVMTELTKNDSGIYACGVGGNTDRGKTQQITLTV 122
>ref|XP_002696083.1| PREDICTED: CD300 molecule-like family member g [Bos taurus].
Length = 295
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +1
Query: 244 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 417
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 418 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 582
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS PG +
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129
Query: 583 GDVHVYTADLGSTVTINCPFKSENAQKP 666
+ V TA LG T PF + P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155
>ref|XP_002684488.1| PREDICTED: CD300 molecule-like family member g isoform 1 [Bos
taurus].
Length = 295
Score = 61.6 bits (148), Expect = 2e-09
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Frame = +1
Query: 244 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 417
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 418 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS-----QGPGQI 582
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS PG +
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVSLLVFPASPGLL 129
Query: 583 GDVHVYTADLGSTVTINCPFKSENAQKP 666
+ V TA LG T PF + P
Sbjct: 130 --LTVTTAKLGKTEAEASPFTGTSLISP 155
>ref|XP_872277.3| PREDICTED: CD300 molecule-like family member g isoform 2 [Bos
taurus].
Length = 256
Score = 56.2 bits (134), Expect = 7e-08
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = +1
Query: 244 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYK 417
+ P+++S EG +VS++C Y + +H +KYWCR RCT + S Y +
Sbjct: 19 VVNPKEISGFEGDTVSLQCTYEE-ELKKH-QKYWCREAGLFISRCTGTVFSGEY---GQE 73
Query: 418 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 564
GR ++ + P F + + +LT D G Y CG+ + L FD ++ VS
Sbjct: 74 GRVSVHDNPRENRFTVILRNLTLKDRGKYLCGV----KRLGFDKTMSVS 118
>ref|XP_002696260.1| PREDICTED: CD300 molecule-like family member d-like [Bos taurus].
Length = 338
Score = 55.8 bits (133), Expect = 8e-08
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Frame = +1
Query: 223 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 396
V S I GP+ V VE S+++RC Y R+ R K+WCR A C ++ + G
Sbjct: 74 VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 129
Query: 397 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPG 576
+ +GR ++ + ++ +F + + L DS Y CG+ I L V + + G
Sbjct: 130 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPGKR 189
Query: 577 QI 582
I
Sbjct: 190 SI 191
>ref|XP_001256397.2| PREDICTED: immune receptor expressed on myeloid cells splice-like
[Bos taurus].
Length = 514
Score = 55.5 bits (132), Expect = 1e-07
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Frame = +1
Query: 223 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSR--KYWCRIGAKGRCTTLISSEG 396
V S I GP+ V VE S+++RC Y R+ R K+WCR A C ++ + G
Sbjct: 117 VFQRSSAISGPRAVRGVEQGSLTVRCQYDP----RYERYVKWWCRGAAWNNCRFVVKTTG 172
Query: 397 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
+ +GR ++ + ++ +F + + L DS Y CG+ I L V + + G
Sbjct: 173 SEKEVKEGRVSIRDNQKDRSFTVTMKELRLDDSDTYWCGIEIPGPDLGNPVEVTIDPG 230
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,023,267
Number of extensions: 1616412
Number of successful extensions: 6523
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6438
Number of HSP's successfully gapped: 25
Length of query: 454
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,174,046
Effective search space: 4932568008
Effective search space used: 4932568008
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin ... 555 e-158
Alignment gi|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Can... 93 7e-19
Alignment gi|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory ... 69 1e-11
Alignment gi|XP_540416.2| PREDICTED: similar to NK inhibitory receptor pr... 62 2e-09
Alignment gi|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precurso... 59 8e-09
Alignment gi|XP_848904.1| PREDICTED: similar to triggering receptor expre... 59 1e-08
Alignment gi|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precurso... 58 2e-08
Alignment gi|XP_535568.1| PREDICTED: similar to Junctional adhesion molec... 54 5e-07
Alignment gi|XP_851243.1| PREDICTED: similar to triggering receptor expre... 52 1e-06
>ref|XP_537133.2| PREDICTED: similar to Polymeric-immunoglobulin receptor precursor
(Poly-Ig receptor) (PIGR) [Canis familiaris].
Length = 780
Score = 555 bits (1429), Expect = e-158
Identities = 266/398 (66%), Positives = 315/398 (79%), Gaps = 4/398 (1%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M F ACLLA+FPVVS KSPIFGPQ+V+ VEG S SI CYYPATSVNRH+RKYWCR GA
Sbjct: 1 MRPLFLACLLAVFPVVSTKSPIFGPQEVNIVEGGSASITCYYPATSVNRHTRKYWCRQGA 60
Query: 361 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 540
KGRCTTLISS+GY+SKDY+GRAN+TNFP++ TFVM+I HLT+ DSG YKCGLGI+SRGLS
Sbjct: 61 KGRCTTLISSDGYVSKDYEGRANITNFPDSSTFVMNIDHLTQNDSGRYKCGLGINSRGLS 120
Query: 541 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 720
FDVSL+VS+GPG +GD VYTADLG TVTINCPFK EN++K KSV KK + V VIDS
Sbjct: 121 FDVSLDVSKGPGPLGDTEVYTADLGGTVTINCPFKPENSEKKKSVCKKTDKGCVTVIDST 180
Query: 721 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 888
G +N+++ R L I GT+QL FSF+I ++QL DAG Y+CQ G+ E+S+ DLQVLKP
Sbjct: 181 GEVNSDYGGRIELEIMGTDQLTFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP 240
Query: 889 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLT 1068
EP L+YGDLRGSV FDCALG ++ N+AKFLC++ N + C+VVINTLGKK + FEGRILL
Sbjct: 241 EPNLLYGDLRGSVIFDCALGSDVENMAKFLCRMSNEEACDVVINTLGKKDRSFEGRILLI 300
Query: 1069 PKENSHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXX 1248
PK FSVHIT LRKEDAG+YLCGAH DGEP++G P+QAWQLF+NE+T+IPP
Sbjct: 301 PKNKRSFSVHITNLRKEDAGNYLCGAHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKG 360
Query: 1249 XXXXXXAVTWPLHPKETNSLKYWCRWEENENGRRPQLV 1362
AV P PKETNSLKYWCRWE+ +NG LV
Sbjct: 361 VVGGSVAVFCPYKPKETNSLKYWCRWEDTQNGLCRSLV 398
Score = 96.3 bits (238), Expect = 6e-20
Identities = 92/372 (24%), Positives = 160/372 (43%), Gaps = 18/372 (4%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF-PENG 453
G +V+I C P N +K C+ KG C T+I S G ++ DY GR L +
Sbjct: 145 GGTVTINC--PFKPENSEKKKSVCKKTDKG-CVTVIDSTGEVNSDYGGRIELEIMGTDQL 201
Query: 454 TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 633
TF I + D+G Y C +G + G +V L+V + + ++ DL +V +
Sbjct: 202 TFSFIIKQVQLSDAGRYVCQIGEDTIGEKSNVDLQVLKP-----EPNLLYGDLRGSVIFD 256
Query: 634 CPFKSENAQKPKSVYKKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRI 810
C S+ K + + + +VI++ G + +F R L + N+ FS I +
Sbjct: 257 CALGSDVENMAKFLCRMSNEEACDVVINTLGKKDRSFEGRILLIPK--NKRSFSVHITNL 314
Query: 811 QLRDAGIYICQA---GDEESSADLQ----------VLKPEPELIYGDLRGSVTFDCALGQ 951
+ DAG Y+C A G+ + + +Q V+ P P ++ G + GSV C
Sbjct: 315 RKEDAGNYLCGAHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKP 374
Query: 952 EMANVAKFLCQLKNGKT--CNVVINTLGKKAQDFEGRILLTPKE-NSHFSVHITGLRKED 1122
+ N K+ C+ ++ + C ++ + G + +EGR+ L + N ++V + L D
Sbjct: 375 KETNSLKYWCRWEDTQNGLCRSLVESDGGVTEQYEGRLALHEEPGNGTYTVILNQLTAND 434
Query: 1123 AGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXXXXAVTWPLHPKETN 1302
AG Y C + D + +Q + E ++ P +P K +
Sbjct: 435 AGFYWCLTNGDTHWRSMVKLQVVE---GEPSLKVPNNVTALVGETLKLPCHFPC--KYYS 489
Query: 1303 SLKYWCRWEENE 1338
KYWC+W +
Sbjct: 490 YEKYWCKWSNKD 501
Score = 72.0 bits (175), Expect = 1e-12
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Frame = +1
Query: 253 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIG--AKGRCTTLISSEGYISKDYKGRA 426
P V V G SV++ C Y N S KYWCR G C +L+ S+G +++ Y+GR
Sbjct: 355 PSVVKGVVGGSVAVFCPYKPKETN--SLKYWCRWEDTQNGLCRSLVESDGGVTEQYEGRL 412
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 606
L P NGT+ + + LT D+G Y C + S V L+V +G + + TA
Sbjct: 413 ALHEEPGNGTYTVILNQLTANDAGFYWCLTNGDTHWRSM-VKLQVVEGEPSLKVPNNVTA 471
Query: 607 DLGSTVTINCPF 642
+G T+ + C F
Sbjct: 472 LVGETLKLPCHF 483
Score = 62.0 bits (149), Expect = 1e-09
Identities = 70/287 (24%), Positives = 126/287 (43%), Gaps = 18/287 (6%)
Frame = +1
Query: 337 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG-TFVMDIGHLTRGDSGLYKCG 513
K+ CR+ + C +I++ G + ++GR L P+N +F + I +L + D+G Y CG
Sbjct: 268 KFLCRMSNEEACDVVINTLGKKDRSFEGRILL--IPKNKRSFSVHITNLRKEDAGNYLCG 325
Query: 514 L---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYK 681
G +G L V++ V +G +V + CP+K + K +
Sbjct: 326 AHSDGEPQKGSPIQAWQLFVNEETVIPPSPSVVKGVVGGSVAVFCPYKPKETNSLKYWCR 385
Query: 682 ----KLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAG 849
+ G R LV +S+G + + R L + N ++ ++N++ DAG Y C
Sbjct: 386 WEDTQNGLCRSLV-ESDGGVTEQYEGRLALHEEPGNG-TYTVILNQLTANDAGFYWCLTN 443
Query: 850 DE---ESSADLQVLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTC 1005
+ S LQV++ EP L + + ++ C + + K+ C+ N K C
Sbjct: 444 GDTHWRSMVKLQVVEGEPSLKVPNNVTALVGETLKLPCHFPCKYYSYEKYWCKWSN-KDC 502
Query: 1006 NVVINTLGKKAQDFEGRILLTPKENSHF-SVHITGLRKEDAGHYLCG 1143
+ + + G+ D + +NS S+ + + KED G Y CG
Sbjct: 503 KI-LPSQGEGPSD----AFVNCDQNSQIVSLSLDPVSKEDEGWYWCG 544
>ref|XP_547386.2| PREDICTED: similar to Fc alpha/mu receptor [Canis familiaris].
Length = 460
Score = 92.8 bits (229), Expect = 7e-19
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGR-CTTLISSEGYISKDYKGRA 426
GP+ VS G +V+IRC+Y ++N H RKYWCR+ C T++S+ Y Y+GR
Sbjct: 8 GPRLVSGKPGGAVTIRCHYAPLTINMHDRKYWCRLSPVTHICHTIVSTTHYTHLRYRGRV 67
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
L +FP FV+ + L+ D G Y+CG+G ++ F ++L VS GP
Sbjct: 68 ALADFPRRSLFVVTLAQLSPDDVGRYRCGIGNTNNMFFFSMNLTVSAGP 116
>ref|XP_547385.2| PREDICTED: similar to Fas apoptotic inhibitory molecule 3 [Canis
familiaris].
Length = 410
Score = 68.9 bits (167), Expect = 1e-11
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Frame = +1
Query: 208 LAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLI 384
L I P V M+ + G S++I C P H R Y CR I G C T++
Sbjct: 12 LRILPEVKMEGML----------GGSITIECPLP----QMHVRLYLCREIAESGVCATVV 57
Query: 385 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 561
S++ ++ ++YK R L P+ F++++ LT+ DSG+Y CG G+++ RG + V+L V
Sbjct: 58 SNKNFVKEEYKHRVTLKPCPDRKLFLVEVTELTKSDSGIYACGTGMNTDRGKTQQVTLSV 117
>ref|XP_540416.2| PREDICTED: similar to NK inhibitory receptor precursor [Canis
familiaris].
Length = 289
Score = 61.6 bits (148), Expect = 2e-09
Identities = 34/121 (28%), Positives = 58/121 (47%)
Frame = +1
Query: 244 IFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGR 423
I GP V + G S+++ C Y +T + K+WCR RC L+ + G K K +
Sbjct: 19 ITGPNAVRGLVGGSLTVECCYASTW--KTYSKWWCRGSIWRRCNILVQTTGSEQKVKKNK 76
Query: 424 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYT 603
++ + +N TF + + LT D+ +Y CG+ S L +V + + P + D T
Sbjct: 77 VSIRDNQKNFTFSVTMEELTETDTDIYWCGIEKSGTDLGVEVKVTIDPAPAETKDPPTVT 136
Query: 604 A 606
+
Sbjct: 137 S 137
>ref|XP_852230.1| PREDICTED: similar to CMRF35-A antigen precursor (CMRF-35) [Canis
familiaris].
Length = 224
Score = 59.3 bits (142), Expect = 8e-09
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +1
Query: 238 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 411
S + GP VS G S+S+RC Y R KYWC K C ++ + +
Sbjct: 23 SSLRGPDSVSGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTESQREV 76
Query: 412 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
KGR ++ + P + TF + + LT GD+G YKCG+ +F V + V+ G
Sbjct: 77 TKGRVSIRDHPADLTFTVTLKSLTEGDAGTYKCGIDTLWVDPTFSVVVSVTPG 129
>ref|XP_848904.1| PREDICTED: similar to triggering receptor expressed on myeloid
cells 4 [Canis familiaris].
Length = 480
Score = 58.5 bits (140), Expect = 1e-08
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Frame = +1
Query: 223 VVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEG 396
+VS + GP+++S EG +VS++C Y + +S KYWCR C+ I +
Sbjct: 157 MVSGYRAMVGPKEISGFEGDTVSLQCTY-REELKTYS-KYWCRERGIFVSHCSNTIYARE 214
Query: 397 YISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
+ +GR ++ + P+ T + + LT D+G Y CG+ R SF VSL V GP
Sbjct: 215 DGQETTEGRVSIQDSPQTLTLSVTLRKLTLQDAGKYFCGVSKLGRDESFLVSLLVFPGP 273
>ref|XP_540408.2| PREDICTED: similar to CMRF35-H antigen precursor (CMRF35-H9)
(CMRF-35-H9) (Inhibitory receptor protein 60) (IRp60)
(IRC1/IRC2) (NK inhibitory receptor) [Canis familiaris].
Length = 335
Score = 58.2 bits (139), Expect = 2e-08
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +1
Query: 238 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCT--TLISSEGYISKD 411
S + GP V G S+S+RC Y R KYWC K C ++ + +
Sbjct: 46 SSLRGPDSVLGTVGGSLSVRCQYKEGF--RDHDKYWC----KSPCVWKKIVETTKSQREV 99
Query: 412 YKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDV 591
KGR ++ + P + TF + + +LT GD+G YKCG+ I +F V + V+
Sbjct: 100 TKGRVSIRDHPADLTFTVTLKNLTEGDAGTYKCGIDILWVDPTFSVVVSVNPATMSTSSA 159
Query: 592 HVYTADLGSTVT 627
+ + ST+T
Sbjct: 160 SITVTQI-STIT 170
>ref|XP_535568.1| PREDICTED: similar to Junctional adhesion molecule B precursor
(JAMA-A) (Junctional adhesion molecule 2) (Vascular
endothelial junction-associated molecule) (VE-JAM)
[Canis familiaris].
Length = 298
Score = 53.5 bits (127), Expect = 5e-07
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 4/203 (1%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 429
G Q V++ E V + C YP +++ SR W ++G R + + + + D+K RA
Sbjct: 34 GHQVVTATEYQEVILACKYPKKTIS--SRLEWKKLG---RSVSFVYYQQALQGDFKDRAE 88
Query: 430 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFD---VSLEVSQGPGQIGDVHV 597
+ +F + I ++TR D+G Y+C + S +G + + V+LEV P
Sbjct: 89 MIDFS------IRIKNVTRNDAGKYRCEVSAPSEQGQNLEEDTVTLEVLVAPAVPACEVP 142
Query: 598 YTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTN 777
+A G+ V + C K N P+ + K G + + N L + TN ++ +
Sbjct: 143 NSALSGTVVELRCQDKEGN-PAPEYTWFKDG----VPLSENPKLGSQSTNSSYTMNTKSG 197
Query: 778 QLVFSFVINRIQLRDAGIYICQA 846
L F N + D+G Y C+A
Sbjct: 198 TLQF----NTVSKLDSGEYSCEA 216
>ref|XP_851243.1| PREDICTED: similar to triggering receptor expressed on myeloid
cells-like 4 [Canis familiaris].
Length = 306
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = +1
Query: 253 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANL 432
P+ + +EG ++S++C Y + ++ S K WCR + CT L S +K ++
Sbjct: 26 PELLRKLEGETISVKCLYQSWQDSK-SVKAWCRQVSARTCTVLASYPRIQGMQWKPGNSI 84
Query: 433 TNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSF-DVSLEVSQGP 573
++ G F++ + L DSG Y CG+ SS L++ ++ L VS P
Sbjct: 85 QDWVRLGYFIVTMTKLKVEDSGFYSCGIYKSSEILTYRNIHLVVSPAP 132
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,374,669
Number of extensions: 1658063
Number of successful extensions: 6193
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6116
Number of HSP's successfully gapped: 12
Length of query: 454
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 348
Effective length of database: 15,340,888
Effective search space: 5338629024
Effective search space used: 5338629024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002635.2| polymeric immunoglobulin receptor precursor [Ho... 538 e-153
Alignment gi|NP_001164102.1| high affinity immunoglobulin alpha and immun... 96 6e-20
Alignment gi|NP_114418.2| high affinity immunoglobulin alpha and immunogl... 92 1e-18
Alignment gi|NP_001116451.1| high affinity immunoglobulin alpha and immun... 92 1e-18
Alignment gi|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform ... 72 2e-12
Alignment gi|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [... 72 2e-12
Alignment gi|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Hom... 61 2e-09
Alignment gi|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [... 61 2e-09
Alignment gi|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [... 59 1e-08
Alignment gi|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [... 57 3e-08
>ref|NP_002635.2| polymeric immunoglobulin receptor precursor [Homo sapiens].
Length = 764
Score = 538 bits (1387), Expect = e-153
Identities = 264/399 (66%), Positives = 314/399 (78%), Gaps = 5/399 (1%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M F CLLA+FP +S KSPIFGP++V+SVEG+SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MLLFVLTCLLAVFPAISTKSPIFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGA 60
Query: 361 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 540
+G C TLISSEGY+S Y GRANLTNFPENGTFV++I L++ DSG YKCGLGI+SRGLS
Sbjct: 61 RGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLS 120
Query: 541 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 720
FDVSLEVSQGPG + D VYT DLG TVTINCPFK+ENAQK KS+YK++G VLVIDS+
Sbjct: 121 FDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 180
Query: 721 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESS----ADLQVLKP 888
GY+N N+T R L IQGT QL+FS VIN+++L DAG Y+CQAGD+ +S ADLQVLKP
Sbjct: 181 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 240
Query: 889 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLT 1068
EPEL+Y DLRGSVTF CALG E+ANVAKFLC+ +G+ C+VV+NTLGK+A FEGRILL
Sbjct: 241 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN 300
Query: 1069 PKE-NSHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXX 1245
P++ + FSV ITGLRKEDAG YLCGAH DG+ +EG P+QAWQLF+NE++ IP
Sbjct: 301 PQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 360
Query: 1246 XXXXXXXAVTWPLHPKETNSLKYWCRWEENENGRRPQLV 1362
AV P + KE+ S+KYWC WE +NGR P LV
Sbjct: 361 GVAGGSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLV 399
Score = 77.0 bits (188), Expect = 4e-14
Identities = 96/373 (25%), Positives = 158/373 (42%), Gaps = 23/373 (6%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRK-YWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 453
G +V+I C P + N RK + +IG +I S GY++ +Y GR L G
Sbjct: 145 GRTVTINC--PFKTENAQKRKSLYKQIGLYP--VLVIDSSGYVNPNYTGRIRLDI---QG 197
Query: 454 T----FVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGST 621
T F + I L D+G Y C G S + L+V + ++ VY DL +
Sbjct: 198 TGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL----VYE-DLRGS 252
Query: 622 VTINCPFKSENAQKPKSVYKKL-GQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFV 798
VT +C E A K + ++ G+ +V+++ G F R L+ Q + FS V
Sbjct: 253 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS-FSVV 311
Query: 799 INRIQLRDAGIYICQA---GDEESSADLQV----------LKPEPELIYGDLRGSVTFDC 939
I ++ DAG Y+C A G + + +Q + P ++ G GSV C
Sbjct: 312 ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGGSVAVLC 371
Query: 940 ALGQEMANVAKFLCQ---LKNGKTCNVVINTLGKKAQDFEGRI-LLTPKENSHFSVHITG 1107
++ + K+ C +NG+ C +++++ G +EGR+ LL N F+V +
Sbjct: 372 PYNRKESKSIKYWCLWEGAQNGR-CPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQ 430
Query: 1108 LRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXXXXAVTWPLH 1287
L DAG Y C + D + + ++ E + P +P
Sbjct: 431 LTSRDAGFYWCLTNGDTLWRTTVEI---KIIEGEPNLKVPGNVTAVLGETLKVPCHFPC- 486
Query: 1288 PKETNSLKYWCRW 1326
K ++ KYWC+W
Sbjct: 487 -KFSSYEKYWCKW 498
Score = 72.8 bits (177), Expect = 7e-13
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 4/200 (2%)
Frame = +1
Query: 253 PQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRI-GAK-GRCTTLISSEGYISKDYKGRA 426
P V V G SV++ C P S KYWC GA+ GRC L+ SEG++ Y+GR
Sbjct: 356 PTVVKGVAGGSVAVLC--PYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL 413
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTA 606
+L P NGTF + + LT D+G Y C L V +++ +G + TA
Sbjct: 414 SLLEEPGNGTFTVILNQLTSRDAGFYWC-LTNGDTLWRTTVEIKIIEGEPNLKVPGNVTA 472
Query: 607 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 780
LG T+ + C P K + +K + G + L G ++A ++ ++
Sbjct: 473 VLGETLKVPCHFPCKFSSYEKYWCKWNNTG-CQALPSQDEG------PSKAFVNCDENSR 525
Query: 781 LVFSFVINRIQLRDAGIYIC 840
LV S +N + D G Y C
Sbjct: 526 LV-SLTLNLVTRADEGWYWC 544
>ref|NP_001164102.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform b [Homo sapiens].
Length = 577
Score = 96.3 bits (238), Expect = 6e-20
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 426
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S GP
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTISAGP 219
>ref|NP_114418.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform a [Homo sapiens].
Length = 265
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 426
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 564
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216
>ref|NP_001116451.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform a [Homo sapiens].
Length = 265
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRA 426
G + VS G +V+I+C+Y +SVNRH RKYWCR+G + C T++S+ Y Y+ R
Sbjct: 111 GSRLVSGEPGGAVTIQCHYAPSSVNRHQRKYWCRLGPPRWICQTIVSTNQYTHHRYRDRV 170
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 564
LT+FP+ G FV+ + L+ D G Y CG+G + L ++L +S
Sbjct: 171 ALTDFPQRGLFVVRLSQLSPDDIGCYLCGIGSENNMLFLSMNLTIS 216
>ref|NP_001180267.1| fas apoptotic inhibitory molecule 3 isoform c [Homo sapiens].
Length = 306
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 453
G SV+I+C P H R Y CR + G C T++S+ +I +YKGR L +P
Sbjct: 30 GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85
Query: 454 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 561
F++++ LT DSG+Y CG G+++ RG + V+L V
Sbjct: 86 LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 892 PEL-IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGK-TCNVVINTLGKKAQDFEGRILL 1065
PE+ + G+L GSVT C L + +V +LC+ G TC V++T +++GR+ L
Sbjct: 21 PEVKVEGELGGSVTIKCPLPE--MHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTL 78
Query: 1066 T--PKENSHFSVHITGLRKEDAGHYLCGA 1146
P++N F V +T L + D+G Y CGA
Sbjct: 79 KQYPRKNL-FLVEVTQLTESDSGVYACGA 106
>ref|NP_005440.1| fas apoptotic inhibitory molecule 3 isoform a [Homo sapiens].
Length = 390
Score = 71.6 bits (174), Expect = 2e-12
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCR-IGAKGRCTTLISSEGYISKDYKGRANLTNFPENG 453
G SV+I+C P H R Y CR + G C T++S+ +I +YKGR L +P
Sbjct: 30 GGSVTIKCPLP----EMHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTLKQYPRKN 85
Query: 454 TFVMDIGHLTRGDSGLYKCGLGISS-RGLSFDVSLEV 561
F++++ LT DSG+Y CG G+++ RG + V+L V
Sbjct: 86 LFLVEVTQLTESDSGVYACGAGMNTDRGKTQKVTLNV 122
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +1
Query: 892 PEL-IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGK-TCNVVINTLGKKAQDFEGRILL 1065
PE+ + G+L GSVT C L + +V +LC+ G TC V++T +++GR+ L
Sbjct: 21 PEVKVEGELGGSVTIKCPLPE--MHVRIYLCREMAGSGTCGTVVSTTNFIKAEYKGRVTL 78
Query: 1066 T--PKENSHFSVHITGLRKEDAGHYLCGA 1146
P++N F V +T L + D+G Y CGA
Sbjct: 79 KQYPRKNL-FLVEVTQLTESDSGVYACGA 106
>ref|NP_660316.2| CMRF35-like molecule 9 isoform 1 precursor [Homo sapiens].
Length = 332
Score = 61.2 bits (147), Expect = 2e-09
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 423
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 424 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
++ + + + ++ + +LT D+G Y CG+ S +SL V GP
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128
>ref|NP_001161794.1| CMRF35-like molecule 9 isoform 4 precursor [Homo sapiens].
Length = 307
Score = 61.2 bits (147), Expect = 2e-09
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 423
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 424 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
++ + + + ++ + +LT D+G Y CG+ S +SL V GP
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPGP 128
>ref|NP_001161796.1| CMRF35-like molecule 9 isoform 2 precursor [Homo sapiens].
Length = 233
Score = 58.5 bits (140), Expect = 1e-08
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 423
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 424 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
++ + + + ++ + +LT D+G Y CG+ S +SL V G
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPG 127
>ref|NP_001161795.1| CMRF35-like molecule 9 isoform 3 precursor [Homo sapiens].
Length = 273
Score = 57.4 bits (137), Expect = 3e-08
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK--GRCTTLISSEGYISKDYKGR 423
GP+++S EG +VS++C Y R RKYWCR G RC+ I +E + KGR
Sbjct: 21 GPEEISGFEGDTVSLQCTYREEL--RDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGR 78
Query: 424 ANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 516
++ + + + ++ + +LT D+G Y CG+
Sbjct: 79 VSIRDSRQELSLIVTLWNLTLQDAGEYWCGV 109
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,314,909
Number of extensions: 1633644
Number of successful extensions: 6417
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6308
Number of HSP's successfully gapped: 25
Length of query: 454
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 348
Effective length of database: 14,802,980
Effective search space: 5151437040
Effective search space used: 5151437040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035212.2| polymeric immunoglobulin receptor precursor [Mu... 481 e-136
Alignment gi|NP_001164103.1| high affinity immunoglobulin alpha and immun... 108 1e-23
Alignment gi|NP_659209.2| high affinity immunoglobulin alpha and immunogl... 108 1e-23
Alignment gi|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus muscul... 63 5e-10
Alignment gi|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus muscul... 63 5e-10
Alignment gi|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus]. 63 5e-10
Alignment gi|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus muscul... 62 1e-09
Alignment gi|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [... 57 3e-08
Alignment gi|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [... 57 3e-08
Alignment gi|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus... 57 3e-08
>ref|NP_035212.2| polymeric immunoglobulin receptor precursor [Mus musculus].
Length = 771
Score = 481 bits (1238), Expect = e-136
Identities = 239/399 (59%), Positives = 291/399 (72%), Gaps = 5/399 (1%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
M + + L+ +F VS KSPIFGPQ+VSS+EG SVSI CYYP TSVNRH+RKYWCR GA
Sbjct: 1 MRLYLFTLLVTVFSGVSTKSPIFGPQEVSSIEGDSVSITCYYPDTSVNRHTRKYWCRQGA 60
Query: 361 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 540
G CTTLISS GY+SK+Y GRANL NFPEN TFV++I LT+ D+G YKCGLG S+RGLS
Sbjct: 61 SGMCTTLISSNGYLSKEYSGRANLINFPENNTFVINIEQLTQDDTGSYKCGLGTSNRGLS 120
Query: 541 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 720
FDVSLEVSQ P D HVYT D+G VTI CPFK ENA KS+ KK Q LVIDS
Sbjct: 121 FDVSLEVSQVPELPSDTHVYTKDIGRNVTIECPFKRENAPSKKSLCKKTNQSCELVIDST 180
Query: 721 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGD----EESSADLQVLKP 888
+N ++ RA L ++GT+ VF I+ + DAG+YICQAG+ ++ + DLQVL P
Sbjct: 181 EKVNPSYIGRAKLFMKGTDLTVFYVNISHLTHNDAGLYICQAGEGPSADKKNVDLQVLAP 240
Query: 889 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLT 1068
EPEL+Y DLR SVTF+C LG+E+AN AK+LC++ N +TC+V+INTLGK+ DFEGRIL+T
Sbjct: 241 EPELLYKDLRSSVTFECDLGREVANEAKYLCRM-NKETCDVIINTLGKRDPDFEGRILIT 299
Query: 1069 PK-ENSHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXX 1245
PK +N FSV ITGLRKEDAGHY CGAH G P+EGWP+Q WQLF+NE++ IP
Sbjct: 300 PKDDNGRFSVLITGLRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVK 359
Query: 1246 XXXXXXXAVTWPLHPKETNSLKYWCRWEENENGRRPQLV 1362
A+ P +PKE++SLKYWCRWE + NG P LV
Sbjct: 360 GVTGGSVAIACPYNPKESSSLKYWCRWEGDGNGHCPVLV 398
Score = 90.9 bits (224), Expect = 2e-18
Identities = 92/368 (25%), Positives = 156/368 (42%), Gaps = 18/368 (4%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGT 456
G +V+I C P N S+K C+ C +I S ++ Y GRA L + T
Sbjct: 145 GRNVTIEC--PFKRENAPSKKSLCK-KTNQSCELVIDSTEKVNPSYIGRAKLFMKGTDLT 201
Query: 457 -FVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTIN 633
F ++I HLT D+GLY C G +V L+V ++ DL S+VT
Sbjct: 202 VFYVNISHLTHNDAGLYICQAGEGPSADKKNVDLQVLAPEPEL-----LYKDLRSSVTFE 256
Query: 634 CPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQ 813
C E A + K + + + ++I++ G + +F R ++ + N FS +I ++
Sbjct: 257 CDLGREVANEAKYLCRMNKETCDVIINTLGKRDPDFEGRILITPKDDNGR-FSVLITGLR 315
Query: 814 LRDAGIYICQA---GDEESSADLQV----------LKPEPELIYGDLRGSVTFDCALGQE 954
DAG Y C A G + +Q + ++ G GSV C +
Sbjct: 316 KEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVKGVTGGSVAIACPYNPK 375
Query: 955 MANVAKFLCQLK---NGKTCNVVINTLGKKAQDFEGRILLTPKE-NSHFSVHITGLRKED 1122
++ K+ C+ + NG C V++ T + +++EGR+ L + N ++V + L ED
Sbjct: 376 ESSSLKYWCRWEGDGNGH-CPVLVGTQAQVQEEYEGRLALFDQPGNGTYTVILNQLTTED 434
Query: 1123 AGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXXXXAVTWPLHPKETN 1302
AG Y C + D + +Q + + + P + +P K +
Sbjct: 435 AGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHYPC--KFYS 492
Query: 1303 SLKYWCRW 1326
KYWC+W
Sbjct: 493 QEKYWCKW 500
Score = 71.2 bits (173), Expect = 2e-12
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 7/200 (3%)
Frame = +1
Query: 262 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 435
V V G SV+I C P S KYWCR G C L+ ++ + ++Y+GR L
Sbjct: 358 VKGVTGGSVAIAC--PYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALF 415
Query: 436 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG---PGQIGDVHVYTA 606
+ P NGT+ + + LT D+G Y C SR + + L+V++ P TA
Sbjct: 416 DQPGNGTYTVILNQLTTEDAGFYWCLTNGDSRWRT-TIELQVAEATREPNLEVTPQNATA 474
Query: 607 DLGSTVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 780
LG T T++C P K + +K + G +L G ++ +S ++Q
Sbjct: 475 VLGETFTVSCHYPCKFYSQEKYWCKWSNKG-CHILPSHDEG------ARQSSVSCDQSSQ 527
Query: 781 LVFSFVINRIQLRDAGIYIC 840
LV S +N + D G Y C
Sbjct: 528 LV-SMTLNPVSKEDEGWYWC 546
Score = 63.2 bits (152), Expect = 5e-10
Identities = 71/306 (23%), Positives = 124/306 (40%), Gaps = 18/306 (5%)
Frame = +1
Query: 280 SSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTF 459
SSV+ C N KY CR+ K C +I++ G D++GR +T +NG F
Sbjct: 251 SSVTFECDLGREVANE--AKYLCRMN-KETCDVIINTLGKRDPDFEGRILITPKDDNGRF 307
Query: 460 VMDIGHLTRGDSGLYKCGL---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVT 627
+ I L + D+G Y+CG G+ G L V++ V G +V
Sbjct: 308 SVLITGLRKEDAGHYQCGAHSSGLPQEGWPIQTWQLFVNEESTIPNRRSVVKGVTGGSVA 367
Query: 628 INCPFKSENAQKPKSVYKKLGQIR---VLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFV 798
I CP+ + + K + G +++ + + + R L Q N ++ +
Sbjct: 368 IACPYNPKESSSLKYWCRWEGDGNGHCPVLVGTQAQVQEEYEGRLALFDQPGNG-TYTVI 426
Query: 799 INRIQLRDAGIYICQAGDEE---SSADLQV--------LKPEPELIYGDLRGSVTFDCAL 945
+N++ DAG Y C + ++ +LQV L+ P+ L + T C
Sbjct: 427 LNQLTTEDAGFYWCLTNGDSRWRTTIELQVAEATREPNLEVTPQNATAVLGETFTVSCHY 486
Query: 946 GQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKENSHFSVHITGLRKEDA 1125
+ + K+ C+ N K C++ L + + + + S+ + + KED
Sbjct: 487 PCKFYSQEKYWCKWSN-KGCHI----LPSHDEGARQSSVSCDQSSQLVSMTLNPVSKEDE 541
Query: 1126 GHYLCG 1143
G Y CG
Sbjct: 542 GWYWCG 547
>ref|NP_001164103.1| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform 1 precursor [Mus musculus].
Length = 591
Score = 108 bits (270), Expect = 1e-23
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 426
GP+ V+ G +V+I C+Y +SVNRH RKYWCR+G+ C T++S+ Y DY+GRA
Sbjct: 142 GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 201
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
LT+ P++G FV+ + L+ GD GLY+CG+G + L F V+L VS GP
Sbjct: 202 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 250
>ref|NP_659209.2| high affinity immunoglobulin alpha and immunoglobulin mu Fc
receptor isoform 2 precursor [Mus musculus].
Length = 535
Score = 108 bits (270), Expect = 1e-23
Identities = 52/109 (47%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAK-GRCTTLISSEGYISKDYKGRA 426
GP+ V+ G +V+I C+Y +SVNRH RKYWCR+G+ C T++S+ Y DY+GRA
Sbjct: 86 GPRLVTGNTGGAVTIHCHYAPSSVNRHQRKYWCRLGSPLWICHTVVSTNQYTHPDYRGRA 145
Query: 427 NLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
LT+ P++G FV+ + L+ GD GLY+CG+G + L F V+L VS GP
Sbjct: 146 ALTDIPQSGLFVVRLLRLSLGDVGLYRCGIGDRNDMLFFSVNLTVSAGP 194
>ref|NP_001154184.1| CMRF35-like molecule 9 isoform 3 [Mus musculus].
Length = 331
Score = 63.2 bits (152), Expect = 5e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 414
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_001154183.1| CMRF35-like molecule 9 isoform 1 [Mus musculus].
Length = 415
Score = 63.2 bits (152), Expect = 5e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 414
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_082263.2| CMRF35-like molecule 9 isoform 4 [Mus musculus].
Length = 287
Score = 63.2 bits (152), Expect = 5e-10
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 414
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQG 570
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V G
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIVFPG 126
>ref|NP_001154185.1| CMRF35-like molecule 9 isoform 2 [Mus musculus].
Length = 371
Score = 62.0 bits (149), Expect = 1e-09
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA--KGRCTTLISSEGYISKDY--- 414
GP+++S EG +VS+RC Y + RKYWCR G RC ++ Y ++D
Sbjct: 21 GPKEISGFEGDTVSLRCTY--VEKMKEHRKYWCRQGGILVSRCGDIV----YANQDQEVT 74
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEV 561
+GR ++ + P+ + + + LT DSG Y CG+ R SF+V+L V
Sbjct: 75 RGRMSIRDSPQELSMTVIMRDLTLKDSGKYWCGIDRLGRDESFEVTLIV 123
>ref|NP_001162624.1| CMRF35-like molecule 1 isoform 1 precursor [Mus musculus].
Length = 337
Score = 57.4 bits (137), Expect = 3e-08
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +1
Query: 235 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 414
+ P+ GP++VS E S++++C Y TS + +KYWC+ + C TL+ ++
Sbjct: 20 EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVH 594
K R ++ + + F + + L D+G+Y C GI+ GL + V+ GP +
Sbjct: 78 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGPAIQVPIT 135
Query: 595 VYT-ADLGSTVTI 630
V T + ST TI
Sbjct: 136 VPTMPPITSTTTI 148
>ref|NP_081252.1| fas apoptotic inhibitory molecule 3 precursor [Mus musculus].
Length = 422
Score = 57.4 bits (137), Expect = 3e-08
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Frame = +1
Query: 193 FYACLLAIFPVVSMKSPIFGPQDVSSVE-GSSVSIRCYYPATSVNRHSRKYWCRIGAK-G 366
F+ LL PV + P+ +VE G S+ I C P H R Y CR AK G
Sbjct: 3 FWLWLLYFLPVSGALRVL--PEVQLNVEWGGSIIIECPLPQL----HVRMYLCRQMAKPG 56
Query: 367 RCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSF 543
C+T++S+ ++ K+Y+ R LT + F++++ LT D G+Y CG+G+ + +G +
Sbjct: 57 ICSTVVSNT-FVKKEYERRVTLTPCLDKKLFLVEMTQLTENDDGIYACGVGMKTDKGKTQ 115
Query: 544 DVSLEV 561
++L V
Sbjct: 116 KITLNV 121
>ref|NP_663609.2| CMRF35-like molecule 1 isoform 2 precursor [Mus musculus].
Length = 330
Score = 57.0 bits (136), Expect = 3e-08
Identities = 33/113 (29%), Positives = 59/113 (52%)
Frame = +1
Query: 235 KSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDY 414
+ P+ GP++VS E S++++C Y TS + +KYWC+ + C TL+ ++
Sbjct: 20 EDPVTGPEEVSGQEQGSLTVQCRY--TSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVK 77
Query: 415 KGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGP 573
K R ++ + + F + + L D+G+Y C GI+ GL + V+ GP
Sbjct: 78 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWC--GITKGGLDPMFKVTVNIGP 128
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,600,739
Number of extensions: 1360779
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5330
Number of HSP's successfully gapped: 21
Length of query: 454
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 349
Effective length of database: 12,463,779
Effective search space: 4349858871
Effective search space used: 4349858871
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa]. 773 0.0
Alignment gi|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor... 508 e-144
Alignment gi|XP_003357468.1| PREDICTED: high affinity immunoglobulin alph... 92 9e-19
Alignment gi|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor... 87 2e-17
Alignment gi|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule... 66 4e-11
Alignment gi|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus ... 56 5e-08
Alignment gi|XP_003361575.1| PREDICTED: junctional adhesion molecule B-li... 51 2e-06
Alignment gi|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus ... 50 3e-06
>ref|NP_999324.1| polymeric immunoglobulin receptor [Sus scrofa].
Length = 758
Score = 773 bits (1995), Expect = 0.0
Identities = 377/394 (95%), Positives = 378/394 (95%)
Frame = +1
Query: 181 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 360
MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA
Sbjct: 1 MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA 60
Query: 361 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 540
KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS
Sbjct: 61 KGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLS 120
Query: 541 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 720
FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN
Sbjct: 121 FDVSLEVSQGPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSN 180
Query: 721 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 900
GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL
Sbjct: 181 GYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPEL 240
Query: 901 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKEN 1080
IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKEN
Sbjct: 241 IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKEN 300
Query: 1081 SHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXX 1260
SHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPP
Sbjct: 301 SHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGG 360
Query: 1261 XXAVTWPLHPKETNSLKYWCRWEENENGRRPQLV 1362
AVT P +PKETNSLKYWCRWEENENGR PQLV
Sbjct: 361 SVAVTCPYNPKETNSLKYWCRWEENENGRCPQLV 394
Score = 80.5 bits (197), Expect = 2e-15
Identities = 63/201 (31%), Positives = 93/201 (46%), Gaps = 4/201 (1%)
Frame = +1
Query: 262 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 435
V V G SV++ C Y N S KYWCR GRC L+ S G +++ Y+GR L
Sbjct: 354 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 411
Query: 436 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 615
P NGTF + + LT D+G Y C SR S V L++ +G + TA +G
Sbjct: 412 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 470
Query: 616 STVTINC--PFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 789
T+ ++C P K + QK + G R L G ++A ++ +Q++
Sbjct: 471 ETLKLSCHFPCKFYSYQKYWCKWSNTG-CRALPSQDEG------QSQAFVNCDKKSQII- 522
Query: 790 SFVINRIQLRDAGIYICQAGD 852
S +N ++ D G Y C D
Sbjct: 523 SLNLNPVRKEDEGWYWCGVKD 543
Score = 77.8 bits (190), Expect = 1e-14
Identities = 88/384 (22%), Positives = 153/384 (39%), Gaps = 25/384 (6%)
Frame = +1
Query: 250 GPQDVSSVE------GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTL-ISSEGYISK 408
GP + V GS+V+I C + + + + Y G+ L I S GY++
Sbjct: 130 GPGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVY----KKLGQIRVLVIDSNGYLNN 185
Query: 409 DYKGRANLTNFPENG-TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIG 585
++ RA+L+ N F I + D+G+Y C G V
Sbjct: 186 NFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKP--------- 236
Query: 586 DVHVYTADLGSTVTINCPFKSENAQKPKSVYK-KLGQIRVLVIDSNGYLNNNFTNRAHLS 762
+ + DL +VT +C E A K + + K G+ +VI++ G +F R L+
Sbjct: 237 EPELIYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLT 296
Query: 763 IQGTNQLVFSFVINRIQLRDAGIYICQA---GDEESSADLQ----------VLKPEPELI 903
+ + FS I ++ DAG Y+C A G+ + +Q ++ P ++
Sbjct: 297 PKENSH--FSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVV 354
Query: 904 YGDLRGSVTFDCALGQEMANVAKFLCQLKNGKT--CNVVINTLGKKAQDFEGRILLTPKE 1077
G + GSV C + N K+ C+ + + C ++ + G + +EGR+ L +
Sbjct: 355 RGVVGGSVAVTCPYNPKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEP 414
Query: 1078 -NSHFSVHITGLRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXX 1254
N F+V + L DAG Y C + D + ++ E + P
Sbjct: 415 GNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS---TVELKIVEGEPNLKLPENVTAWVGE 471
Query: 1255 XXXXAVTWPLHPKETNSLKYWCRW 1326
+ +P K + KYWC+W
Sbjct: 472 TLKLSCHFPC--KFYSYQKYWCKW 493
Score = 70.9 bits (172), Expect = 2e-12
Identities = 68/284 (23%), Positives = 130/284 (45%), Gaps = 15/284 (5%)
Frame = +1
Query: 337 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 516
K+ C++ C +I++ G ++D++GR LT EN F + I L + D+G Y CG
Sbjct: 264 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 322
Query: 517 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 678
G G L +++ V +G +V + CP+ K N+ K +
Sbjct: 323 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 382
Query: 679 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 855
++ R +++S+G +N + R L + N F+ ++N++ RDAG Y C ++
Sbjct: 383 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 441
Query: 856 E---SSADLQVLKPEPEL-----IYGDLRGSVTFDCALGQEMANVAKFLCQLKNGKTCNV 1011
S+ +L++++ EP L + + ++ C + + K+ C+ N C
Sbjct: 442 SRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCKFYSYQKYWCKWSN-TGCRA 500
Query: 1012 VINTLGKKAQDFEGRILLTPKENSHFSVHITGLRKEDAGHYLCG 1143
+ + ++Q F K++ S+++ +RKED G Y CG
Sbjct: 501 LPSQDEGQSQAFVN----CDKKSQIISLNLNPVRKEDEGWYWCG 540
>ref|XP_003357466.1| PREDICTED: polymeric immunoglobulin receptor-like, partial [Sus
scrofa].
Length = 405
Score = 508 bits (1308), Expect = e-144
Identities = 247/264 (93%), Positives = 248/264 (93%)
Frame = +1
Query: 571 PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 750
PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR
Sbjct: 1 PGQIGDVHVYTADLGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNR 60
Query: 751 AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 930
AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT
Sbjct: 61 AHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKPEPELIYGDLRGSVT 120
Query: 931 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKENSHFSVHITGL 1110
FDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKENSHFSVHITGL
Sbjct: 121 FDCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKENSHFSVHITGL 180
Query: 1111 RKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPXXXXXXXXXXXXXAVTWPLHP 1290
RKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPP AVT P +P
Sbjct: 181 RKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNP 240
Query: 1291 KETNSLKYWCRWEENENGRRPQLV 1362
KETNSLKYWCRWEENENGR PQLV
Sbjct: 241 KETNSLKYWCRWEENENGRCPQLV 264
Score = 76.6 bits (187), Expect = 3e-14
Identities = 47/129 (36%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = +1
Query: 262 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRI--GAKGRCTTLISSEGYISKDYKGRANLT 435
V V G SV++ C Y N S KYWCR GRC L+ S G +++ Y+GR L
Sbjct: 224 VRGVVGGSVAVTCPYNPKETN--SLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALY 281
Query: 436 NFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLG 615
P NGTF + + LT D+G Y C SR S V L++ +G + TA +G
Sbjct: 282 EEPGNGTFTVILNQLTNRDAGFYWCLTNEDSRWRS-TVELKIVEGEPNLKLPENVTAWVG 340
Query: 616 STVTINCPF 642
T+ ++C F
Sbjct: 341 ETLKLSCHF 349
Score = 75.1 bits (183), Expect = 9e-14
Identities = 76/312 (24%), Positives = 132/312 (42%), Gaps = 19/312 (6%)
Frame = +1
Query: 277 GSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTL-ISSEGYISKDYKGRANLTNFPENG 453
GS+V+I C + + + + Y G+ L I S GY++ ++ RA+L+ N
Sbjct: 15 GSTVTINCPFKSENAQKPKSVY----KKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ 70
Query: 454 -TFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTADLGSTVTI 630
F I + D+G+Y C G V + + DL +VT
Sbjct: 71 LVFSFVINRIQLRDAGIYICQAGDEESSADLQVLKP---------EPELIYGDLRGSVTF 121
Query: 631 NCPFKSENAQKPKSVYK-KLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINR 807
+C E A K + + K G+ +VI++ G +F R L+ + + FS I
Sbjct: 122 DCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTPKENSH--FSVHITG 179
Query: 808 IQLRDAGIYICQA---GDEESSADLQ----------VLKPEPELIYGDLRGSVTFDCALG 948
++ DAG Y+C A G+ + +Q ++ P ++ G + GSV C
Sbjct: 180 LRKEDAGHYLCGAHPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYN 239
Query: 949 QEMANVAKFLCQLKNGKT--CNVVINTLGKKAQDFEGRILLTPKE-NSHFSVHITGLRKE 1119
+ N K+ C+ + + C ++ + G + +EGR+ L + N F+V + L
Sbjct: 240 PKETNSLKYWCRWEENENGRCPQLVESSGLVNEQYEGRLALYEEPGNGTFTVILNQLTNR 299
Query: 1120 DAGHYLCGAHPD 1155
DAG Y C + D
Sbjct: 300 DAGFYWCLTNED 311
Score = 62.0 bits (149), Expect = 7e-10
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Frame = +1
Query: 337 KYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGL 516
K+ C++ C +I++ G ++D++GR LT EN F + I L + D+G Y CG
Sbjct: 134 KFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGLRKEDAGHYLCGA 192
Query: 517 ---GISSRGLSFDV-SLEVSQGPGQIGDVHVYTADLGSTVTINCPF--KSENAQKPKSVY 678
G G L +++ V +G +V + CP+ K N+ K +
Sbjct: 193 HPDGEPKEGWPVQAWQLFINEDTMIPPRSSVVRGVVGGSVAVTCPYNPKETNSLKYWCRW 252
Query: 679 KKLGQIRV-LVIDSNGYLNNNFTNRAHLSIQGTNQLVFSFVINRIQLRDAGIYICQAGDE 855
++ R +++S+G +N + R L + N F+ ++N++ RDAG Y C ++
Sbjct: 253 EENENGRCPQLVESSGLVNEQYEGRLALYEEPGNG-TFTVILNQLTNRDAGFYWCLTNED 311
Query: 856 ---ESSADLQVLKPEPEL---------IYGDLRGSVTFDCALGQEMAN 963
S+ +L++++ EP L + L+ S F C +E+AN
Sbjct: 312 SRWRSTVELKIVEGEPNLKLPENVTAWVGETLKLSCHFPCIRWKELAN 359
>ref|XP_003357468.1| PREDICTED: high affinity immunoglobulin alpha and immunoglobulin mu
Fc receptor-like [Sus scrofa].
Length = 462
Score = 91.7 bits (226), Expect = 9e-19
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 4/148 (2%)
Frame = +1
Query: 151 GRHSLEEPQA---MTRFFYACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSV 321
G + P+A M + CLL + + GP+ VS G +V+I+C Y +
Sbjct: 10 GEQKVTNPRAGWKMPFLLFLCLL------QAANALKGPRLVSGEPGGAVTIQCKYGPLLI 63
Query: 322 NRHSRKYWCRIG-AKGRCTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSG 498
+ H RKYWCR+ + G C T++S+ Y Y GR L +FP+ G FV+ + L+ D G
Sbjct: 64 SSHQRKYWCRLNPSTGLCHTIVSTNRYTRPYYHGRVALEDFPKKGLFVVRLCQLSPEDVG 123
Query: 499 LYKCGLGISSRGLSFDVSLEVSQGPGQI 582
Y+CG+G ++ L F ++L VS G G +
Sbjct: 124 YYRCGIGNNNNLLFFSMNLTVSAGGGWV 151
>ref|XP_003131286.2| PREDICTED: polymeric immunoglobulin receptor-like [Sus scrofa].
Length = 581
Score = 87.0 bits (214), Expect = 2e-17
Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 7/305 (2%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 429
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 19 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 76
Query: 430 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 609
+ + EN TF + L D+G+Y CG+ + VS+ V GP + +
Sbjct: 77 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 131
Query: 610 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 780
GS + + C + E+ K G ++LV + + R +SI+ +
Sbjct: 132 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 187
Query: 781 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELIYGDLRGSVTFDCALGQ 951
F+ ++L DAGIY C + G + + + P P+ + G RGS+ C
Sbjct: 188 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRGQERGSLAVQCRYTP 247
Query: 952 EMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRI-LLTPKENSHFSVHITGLRKEDAG 1128
+ K+ C+ + C +++ T + + R+ + +EN F+V LR +DAG
Sbjct: 248 GWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVSIRDDRENRTFTVTTEELRLDDAG 307
Query: 1129 HYLCG 1143
Y CG
Sbjct: 308 IYWCG 312
Score = 81.3 bits (199), Expect = 1e-15
Identities = 75/311 (24%), Positives = 132/311 (42%), Gaps = 13/311 (4%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 429
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 123 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 180
Query: 430 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 609
+ + EN TF + L D+G+Y CG+ + VS+ V GP + +
Sbjct: 181 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGPKAVRG-----QE 235
Query: 610 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 780
GS + + C + E+ K G ++LV + + R +SI+ +
Sbjct: 236 RGS-LAVQCRYTPGWESHGKWWCRGADWGNCKILVQTT---ASEPEVKRDRVSIRDDREN 291
Query: 781 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPE------PELIYGDLRGSVTF 933
F+ ++L DAGIY C + G + + + P P+ + G RGS+
Sbjct: 292 RTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQERGSLAV 351
Query: 934 DCALGQEMANVAKFLCQLKNGKTCNVVINTLGKKAQDFEGRILLTP-KENSHFSVHITGL 1110
C + K+ C+ + +C +++ T + + R+ + +EN F+V L
Sbjct: 352 QCRYTPGWESHGKWWCRGADWDSCKILVQTTASEPEVKRDRVSIRDDRENRTFTVTTEEL 411
Query: 1111 RKEDAGHYLCG 1143
R +DAG Y CG
Sbjct: 412 RLDDAGVYWCG 422
Score = 52.0 bits (123), Expect = 8e-07
Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 6/224 (2%)
Frame = +1
Query: 250 GPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRAN 429
GP+ V E S++++C Y T K+WCR G C L+ + + + R +
Sbjct: 227 GPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWGNCKILVQTTASEPEVKRDRVS 284
Query: 430 LTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQIGDVHVYTAD 609
+ + EN TF + L D+G+Y CG+ + VS+ V G +
Sbjct: 285 IRDDRENRTFTVTTEELRLDDAGIYWCGIARVGTDHAEQVSVTVDPGSSPVTGPKAVRGQ 344
Query: 610 LGSTVTINCPFKS--ENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQ- 780
++ + C + E+ K ++LV + + R +SI+ +
Sbjct: 345 ERGSLAVQCRYTPGWESHGKWWCRGADWDSCKILVQTT---ASEPEVKRDRVSIRDDREN 401
Query: 781 LVFSFVINRIQLRDAGIYIC---QAGDEESSADLQVLKPEPELI 903
F+ ++L DAG+Y C + G + + + P P +
Sbjct: 402 RTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTV 445
Score = 48.5 bits (114), Expect = 9e-06
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Frame = +1
Query: 238 SPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYK 417
SP+ GP+ V E S++++C Y T K+WCR C L+ + + +
Sbjct: 333 SPVTGPKAVRGQERGSLAVQCRY--TPGWESHGKWWCRGADWDSCKILVQTTASEPEVKR 390
Query: 418 GRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVSQGPGQI----G 585
R ++ + EN TF + L D+G+Y CG+ V + V P +
Sbjct: 391 DRVSIRDDRENRTFTVTTEELRLDDAGVYWCGIERVGHDHGTQVRVTVDPAPTTVPTTTS 450
Query: 586 DVHVYTADLGS 618
++ +TA + S
Sbjct: 451 AINTFTAPVTS 461
>ref|XP_003130501.1| PREDICTED: fas apoptotic inhibitory molecule 3-like [Sus scrofa].
Length = 420
Score = 66.2 bits (160), Expect = 4e-11
Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Frame = +1
Query: 262 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGA-KGRCTTLISSEGYISKDYKGRANLTN 438
+ V G S+ I C P T V R Y CR A G CTT++S++ ++ +++K R L
Sbjct: 25 LEGVLGGSIVIECPLPETPV----RLYLCRTMALSGTCTTVVSNKNFVLEEFKHRVTLEL 80
Query: 439 FPENGTFVMDIGHLTRGDSGLYKCGLGI-SSRGLSFDVSLEV 561
P+ F++++ LT DSG+Y CG+G+ ++RG + V+L V
Sbjct: 81 CPDRKLFLVEVTELTERDSGVYACGVGMNTNRGKTQQVTLTV 122
>ref|XP_003131421.2| PREDICTED: CMRF35-like molecule 9-like [Sus scrofa].
Length = 396
Score = 55.8 bits (133), Expect = 5e-08
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +1
Query: 196 YACLLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCR-IGAK-GR 369
+ACL V+ + GP+++S G +VS++C Y ++ H RKYWCR IG R
Sbjct: 8 WACL-----VLPGYGTLVGPKEISGFVGDTVSLQCTY-GEALKTH-RKYWCRKIGYLIAR 60
Query: 370 CTTLISSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDV 549
C+ + S Y +GR ++ + P F + + +LT D G Y CG+ SF V
Sbjct: 61 CSGTVFSGEY---GQEGRVSVHDSPRELRFKVILRNLTLEDEGQYFCGIQRLGLDDSFSV 117
Query: 550 SLEV-SQGPGQIGDVHVYTADLGST 621
SL V PG + V T LG T
Sbjct: 118 SLHVFPASPGL--HLTVSTTKLGKT 140
>ref|XP_003361575.1| PREDICTED: junctional adhesion molecule B-like [Sus scrofa].
Length = 298
Score = 50.8 bits (120), Expect = 2e-06
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 4/199 (2%)
Frame = +1
Query: 262 VSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLISSEGYISKDYKGRANLTNF 441
V+++E V + C YP +V+ SR W ++G R + + + + +K RA L +F
Sbjct: 38 VTAIEYQEVILACKYPKKTVS--SRLEWKKLG---RGISFVYYQQALQGAFKDRAELIDF 92
Query: 442 PENGTFVMDIGHLTRGDSGLYKCGLGISS---RGLSFD-VSLEVSQGPGQIGDVHVYTAD 609
+ I ++TR D+G Y+C + S + L+ D V+LEV P +A
Sbjct: 93 S------IRIKNVTRNDAGKYRCEISAPSEQGQNLAEDTVTLEVLVAPAVPSCEVPSSAL 146
Query: 610 LGSTVTINCPFKSENAQKPKSVYKKLGQIRVLVIDSNGYLNNNFTNRAHLSIQGTNQLVF 789
G+TV + C K N P+ + K G + + N L+ TN ++ + L F
Sbjct: 147 SGTTVELRCQDKEGN-PAPEYTWFKDG----IRLSGNPRLDAQSTNSSYTMNVKSGSLQF 201
Query: 790 SFVINRIQLRDAGIYICQA 846
N + D+G Y C+A
Sbjct: 202 ----NAVSKLDSGEYSCEA 216
>ref|XP_003358034.1| PREDICTED: CMRF35-like molecule 1-like [Sus scrofa].
Length = 292
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/128 (25%), Positives = 55/128 (42%)
Frame = +1
Query: 205 LLAIFPVVSMKSPIFGPQDVSSVEGSSVSIRCYYPATSVNRHSRKYWCRIGAKGRCTTLI 384
LL + +S SP+ GP+ + E S++++C Y T K+WCR C L+
Sbjct: 6 LLPLLFQLSGSSPVTGPKALRGQERGSLTVQCRY--TPGWESHGKWWCRGADWSSCKILV 63
Query: 385 SSEGYISKDYKGRANLTNFPENGTFVMDIGHLTRGDSGLYKCGLGISSRGLSFDVSLEVS 564
+ + + R ++ + EN T + L D+G+Y CG+ V + V
Sbjct: 64 QTTASEPEVKRDRVSIRDDRENRTITVTTEQLRLDDAGIYWCGIARVGTDHGAQVRVTVD 123
Query: 565 QGPGQIGD 588
P GD
Sbjct: 124 PAPVTSGD 131
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,519,869
Number of extensions: 1044038
Number of successful extensions: 3991
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3911
Number of HSP's successfully gapped: 18
Length of query: 454
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,804,438
Effective search space: 3099162176
Effective search space used: 3099162176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002644
(1363 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1277 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1277 bits (644), Expect = 0.0
Identities = 644/644 (100%)
Strand = Plus / Plus
Query: 567 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889670 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73889729
Query: 627 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889730 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73889789
Query: 687 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889790 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73889849
Query: 747 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889850 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73889909
Query: 807 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889910 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73889969
Query: 867 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73889970 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73890029
Query: 927 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890030 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73890089
Query: 987 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctggggaagaaggctcaggactt 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890090 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctggggaagaaggctcaggactt 73890149
Query: 1047 tgagggcaggatcctgctcactcccaaggaaaacagccacttcagcgtgcacatcaccgg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890150 tgagggcaggatcctgctcactcccaaggaaaacagccacttcagcgtgcacatcaccgg 73890209
Query: 1107 gctgcggaaagaggacgcaggacactacctgtgcggagcccaccctgacggtgagcctaa 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890210 gctgcggaaagaggacgcaggacactacctgtgcggagcccaccctgacggtgagcctaa 73890269
Query: 1167 ggaaggctggccggtccaggcttggcagctcttcatcaatgaag 1210
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73890270 ggaaggctggccggtccaggcttggcagctcttcatcaatgaag 73890313
Score = 1277 bits (644), Expect = 0.0
Identities = 644/644 (100%)
Strand = Plus / Plus
Query: 567 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971214 aggtcctggacagataggtgatgtccacgtctacacagcagacctgggcagcacagtaac 73971273
Query: 627 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971274 catcaactgccctttcaagtctgagaatgctcagaagccgaaatccgtgtacaagaaact 73971333
Query: 687 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971334 gggccagatccgcgtcctggtcatcgactccaatgggtatttgaacaacaactttaccaa 73971393
Query: 747 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971394 cagagcacatctcagtattcagggtaccaaccaattagtattcagctttgtcatcaaccg 73971453
Query: 807 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971454 aatccagctccgcgatgctgggatatacatctgccaggctggggatgaagagagcagcgc 73971513
Query: 867 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971514 tgacctccaagtgctgaagcccgagcctgagctgatttatggagacctgaggggctcggt 73971573
Query: 927 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971574 gacatttgactgcgccctgggccaggagatggcaaatgtggccaaatttctgtgccagct 73971633
Query: 987 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctggggaagaaggctcaggactt 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971634 aaaaaatgggaaaacctgcaatgtggtcatcaacaccctggggaagaaggctcaggactt 73971693
Query: 1047 tgagggcaggatcctgctcactcccaaggaaaacagccacttcagcgtgcacatcaccgg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971694 tgagggcaggatcctgctcactcccaaggaaaacagccacttcagcgtgcacatcaccgg 73971753
Query: 1107 gctgcggaaagaggacgcaggacactacctgtgcggagcccaccctgacggtgagcctaa 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971754 gctgcggaaagaggacgcaggacactacctgtgcggagcccaccctgacggtgagcctaa 73971813
Query: 1167 ggaaggctggccggtccaggcttggcagctcttcatcaatgaag 1210
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73971814 ggaaggctggccggtccaggcttggcagctcttcatcaatgaag 73971857
Score = 694 bits (350), Expect = 0.0
Identities = 350/350 (100%)
Strand = Plus / Plus
Query: 221 cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73969943 cagtggtctccatgaagagtcccatattcggtccccaggatgtgagcagcgtggaaggca 73970002
Query: 281 gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970003 gctcggtgtccatcagatgctactacccagccacctccgtcaaccggcattctcggaagt 73970062
Query: 341 actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970063 actggtgccgaataggagccaagggccgctgcacaaccctcatctcctcggagggctaca 73970122
Query: 401 tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970123 tctccaaggactacaagggcagagccaacctcaccaacttcccagagaacggcaccttcg 73970182
Query: 461 tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970183 tgatggacattggccacctgacccgcggtgactctgggctctacaagtgtggtctgggca 73970242
Query: 521 ttagcagccgaggcctgtcttttgatgtgagcctggaggtcagccaaggt 570
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73970243 ttagcagccgaggcctgtcttttgatgtgagcctggaggtcagccaaggt 73970292
Score = 254 bits (128), Expect = 1e-64
Identities = 151/156 (96%), Gaps = 2/156 (1%)
Strand = Plus / Plus
Query: 1209 agatactatgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggc 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73892041 agatactatgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggc 73892100
Query: 1269 cgtgacctggcccctac-acccgaaggaaacaaacagcctgaaatactggtgtcgctggg 1327
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 73892101 cgtgacct-gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctggg 73892159
Query: 1328 aagaaaatgaaaacggccgccgcccgcagctggtgg 1363
|||| ||||||||||||||| |||||||||||||||
Sbjct: 73892160 aagagaatgaaaacggccgctgcccgcagctggtgg 73892195
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 1 gcacagtttcggttttggcagcagcatccagtgtcctgcccgaggcttctagaaaggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73959122 gcacagtttcggttttggcagcagcatccagtgtcctgcccgaggcttctagaaaggcag 73959181
Query: 61 gggttgccgactggtcaacaggctgtgccccgaaaccgagtcgacggaatagaaggaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73959182 gggttgccgactggtcaacaggctgtgccccgaaaccgagtcgacggaatagaaggaagt 73959241
Query: 121 agctaaaa 128
||||||||
Sbjct: 73959242 agctaaaa 73959249
Score = 254 bits (128), Expect = 1e-64
Identities = 151/156 (96%), Gaps = 2/156 (1%)
Strand = Plus / Plus
Query: 1209 agatactatgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggc 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73973585 agatactatgattcccccaagatcctccgtggtgagaggtgtggtgggaggctccgtggc 73973644
Query: 1269 cgtgacctggcccctac-acccgaaggaaacaaacagcctgaaatactggtgtcgctggg 1327
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 73973645 cgtgacct-gcccctacaacccgaaggaaacaaacagcctgaagtactggtgtcgctggg 73973703
Query: 1328 aagaaaatgaaaacggccgccgcccgcagctggtgg 1363
|||| ||||||||||||||| |||||||||||||||
Sbjct: 73973704 aagagaatgaaaacggccgctgcccgcagctggtgg 73973739
Score = 188 bits (95), Expect = 5e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 129 caaccacgcaagaaggtggtctgggcggcacagccttgaggagccacaagccatgacacg 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73968651 caaccacgcaagaaggtggtctgggcggcacagccttgaggagccacaagccatgacacg 73968710
Query: 189 cttcttctacgcctgcctgctggctatcttcccag 223
|||||||||||||||||||||||||||||||||||
Sbjct: 73968711 cttcttctacgcctgcctgctggctatcttcccag 73968745
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,311,012
Number of extensions: 191
Number of successful extensions: 191
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 7
Length of query: 1363
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1342
Effective length of database: 2,808,413,156
Effective search space: 3768890455352
Effective search space used: 3768890455352
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)