Animal-Genome cDNA 20110601C-002648

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001014855.1| 26S protease regulatory subunit 4 [Bos tauru...   709   0.0  
Alignment   gi|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taur...   372   e-103
Alignment   gi|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taur...   326   3e-89
Alignment   gi|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].      322   7e-88
Alignment   gi|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 2...   318   1e-86
Alignment   gi|NP_001015639.1| 26S protease regulatory subunit 7 [Bos tauru...   293   3e-79
Alignment   gi|NP_001039705.1| 26S protease regulatory subunit 10B [Bos tau...   286   4e-77
Alignment   gi|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like...   214   1e-55
Alignment   gi|NP_001029466.1| transitional endoplasmic reticulum ATPase [B...   206   5e-53
Alignment   gi|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1...   182   5e-46

>ref|NP_001014855.1| 26S protease regulatory subunit 4 [Bos taurus].
          Length = 440

 Score =  709 bits (1830), Expect(2) = 0.0
 Identities = 367/394 (93%), Positives = 372/394 (94%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            D ASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR
Sbjct: 44   DVASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 163

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 164  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF
Sbjct: 224  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 283

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 284  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 343

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 344  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 403

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 404  LMALRERRMKVTNEDFKKSKENVLYKKQEGTPEG 437



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 430  KQEGTPEGLYL 440


>ref|NP_001030255.1| 26S protease regulatory subunit 6B [Bos taurus].
          Length = 418

 Score =  372 bits (954), Expect = e-103
 Identities = 178/351 (50%), Positives = 266/351 (75%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +R
Sbjct: 224  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 283

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  + 
Sbjct: 284  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

Query: 1132 IFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
            IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 394


>ref|NP_001179113.2| 26S protease regulatory subunit 6A [Bos taurus].
          Length = 440

 Score =  326 bits (836), Expect = 3e-89
 Identities = 161/356 (45%), Positives = 236/356 (66%), Gaps = 20/356 (5%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 402
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 55   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 114

Query: 403  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 558
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 115  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 174

Query: 559  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 738
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 175  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 234

Query: 739  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 918
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 235  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 294

Query: 919  KRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIE 1098
            KR+DS   G+RE++RTMLELLNQLDGF     VKVI ATNR+  LDPAL+   R+DRKIE
Sbjct: 295  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 354

Query: 1099 FPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            FP+P+E+   RI  IH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 355  FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 410


>ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus].
          Length = 406

 Score =  322 bits (824), Expect = 7e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 80   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 140  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 200  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 259

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 260  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 319

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 320  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 379


>ref|XP_002693621.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 3
            [Bos taurus].
          Length = 456

 Score =  318 bits (814), Expect = 1e-86
 Identities = 161/372 (43%), Positives = 237/372 (63%), Gaps = 36/372 (9%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 402
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 55   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 114

Query: 403  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 558
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 115  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 174

Query: 559  VMKVEKAPQETYADIGGLDNQIQEIKES----------------VELPLTHPEYYEEMGI 690
             M+V++ P E Y+DIGGLD QIQE++E+                + LP+ H E +E +GI
Sbjct: 175  AMEVDERPTEQYSDIGGLDKQIQEVREARHLTSLLCLSASLVEAIVLPMNHKEKFENLGI 234

Query: 691  KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 870
            +PPKGV++YGPPGTGKTLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E
Sbjct: 235  QPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKE 294

Query: 871  HAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQT 1050
             APSI+FIDE+DAIGTKR+DS   G+RE++RTMLELLNQLDGF     VKVI ATNR+  
Sbjct: 295  KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 354

Query: 1051 LDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIK 1230
            LDPAL+   R+DRKIEFP+P+E+   RI  IH+ +M ++ DV  ++L    DD +GA  K
Sbjct: 355  LDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCK 414

Query: 1231 AICTEAGLMALR 1266
            A+C EAG++ALR
Sbjct: 415  AVCVEAGMIALR 426


>ref|NP_001015639.1| 26S protease regulatory subunit 7 [Bos taurus].
          Length = 433

 Score =  293 bits (749), Expect = 3e-79
 Identities = 148/314 (47%), Positives = 211/314 (67%), Gaps = 4/314 (1%)
 Frame = +1

Query: 358  PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 525
            P+ V    +II    +D   I++    ++  V +   V    +E G  V ++   + +  
Sbjct: 92   PLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHI 151

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
             L    DP VT+M+VE+ P  TY+D+GG   QI++++E VE PL HPE +  +GI+PPKG
Sbjct: 152  PLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKG 211

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            V+L+GPPGTGKTL A+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF +A      +
Sbjct: 212  VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACL 271

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +F DEIDAIG  R+D  +GG+ E++RTMLEL+NQLDGFD  G++KV+MATNR  TLDPAL
Sbjct: 272  IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL 331

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
            + P R+DRKIEF LPD +    IF IH   M++  D+  + L     + +GA+I+++CTE
Sbjct: 332  MRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTE 391

Query: 1246 AGLMALRERMMIVT 1287
            AG+ A+R R  I T
Sbjct: 392  AGMFAIRARRKIAT 405


>ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus].
          Length = 389

 Score =  286 bits (731), Expect = 4e-77
 Identities = 142/327 (43%), Positives = 212/327 (64%)
 Frame = +1

Query: 286  QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK 465
            +EQ+K L ++ E+  + +  L+     VG + + + +   IV  + G  + V     +DK
Sbjct: 30   REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 466  DLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESV 645
              L+PG  V L+     ++  L  + DPLV  M  E     +Y++IGGL  QI+E++E +
Sbjct: 90   SKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVI 149

Query: 646  ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 825
            ELPLT+PE ++ +GI PPKG +LYGPPGTGKTLLA+AVA+Q    FL+VV S ++ KY+G
Sbjct: 150  ELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIG 209

Query: 826  DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDS 1005
            +  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REI+RT++ELLNQ+DGFD+
Sbjct: 210  ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269

Query: 1006 GGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLD 1185
               VK+IMATNR  TLDPAL+ P R+DRKI   LP+E+    I  IH   +T   ++  +
Sbjct: 270  LHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYE 329

Query: 1186 DLIMAKDDLSGADIKAICTEAGLMALR 1266
             ++   D  +GAD+  +CTEAG+ A+R
Sbjct: 330  AIVKLSDGFNGADLGNVCTEAGMFAIR 356


>ref|XP_002694445.1| PREDICTED: spermatogenesis associated 5-like, partial [Bos taurus].
          Length = 1004

 Score =  214 bits (546), Expect = 1e-55
 Identities = 109/246 (44%), Positives = 160/246 (65%)
 Frame = +1

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            M+D  P          P  +++DIGGL+N   ++K++VE PL HPE + +MGI+PPKGV+
Sbjct: 717  MNDIRPSAMREVAVDVPNVSWSDIGGLENVKLKLKQAVEWPLKHPESFTQMGIQPPKGVL 776

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPG  KT++AKA+AN++   FL + G EL+ KY+G+  + VRE+FR A   APSI+F
Sbjct: 777  LYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIF 836

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
             DE+DA+  +R  S+SG      R + +LL ++DG +   +V ++ ATNR   +D AL+ 
Sbjct: 837  FDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVTILAATNRPDRIDKALMR 895

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDR I  PLPD  T + I ++    M + ++V L++LI+  D  SGA+I A+C EA 
Sbjct: 896  PGRIDRIIYVPLPDAATRREILNLQFHSMPINNEVDLNELILQTDTYSGAEIIAVCREAA 955

Query: 1252 LMALRE 1269
            L+AL E
Sbjct: 956  LLALEE 961



 Score =  173 bits (438), Expect = 4e-43
 Identities = 96/227 (42%), Positives = 140/227 (61%), Gaps = 1/227 (0%)
 Frame = +1

Query: 589  TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 768
            TY  IGGL++Q++EI+E +ELPL  PE ++  GI PP+GV+LYGPPGTGKT++A+AVAN+
Sbjct: 462  TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGIPPPRGVLLYGPPGTGKTMIARAVANE 521

Query: 769  TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
              A    + G E+I K+ G+    +R++F  A    PSI+FIDE+DA+  KR  + +  E
Sbjct: 522  VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVE 581

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNK 1128
            + +  ++L L++ +    S G V V+ ATNR   LD AL  P R D++IE  +P+ +   
Sbjct: 582  KRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRL 641

Query: 1129 RIFHIHTSRMT-LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
             I      R+  L  +  L  L  +     GAD+KA+C EAGL ALR
Sbjct: 642  DILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLHALR 688


>ref|NP_001029466.1| transitional endoplasmic reticulum ATPase [Bos taurus].
          Length = 806

 Score =  206 bits (523), Expect = 5e-53
 Identities = 109/255 (42%), Positives = 160/255 (62%)
 Frame = +1

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
            V+  + +P+    + E   +  Y DIGG   Q+ +IKE VELPL HP  ++ +G+KPP+G
Sbjct: 181  VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            ++LYGPPGTGKTL+A+AVAN+T A F  + G E++ K  G+    +R+ F  AE++AP+I
Sbjct: 241  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +FIDE+DAI  KR    + GE E RR + +LL  +DG      V V+ ATNR  ++DPAL
Sbjct: 301  IFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
                R DR+++  +PD      I  IHT  M LADDV L+ +        GAD+ A+C+E
Sbjct: 358  RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417

Query: 1246 AGLMALRERMMIVTM 1290
            A L A+R++M ++ +
Sbjct: 418  AALQAIRKKMDLIDL 432



 Score =  189 bits (479), Expect = 7e-48
 Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 9/307 (2%)
 Frame = +1

Query: 376  LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 540
            LE++ ++ H  V   + +    + L  + K  DL++     + + +V   + V MDD   
Sbjct: 396  LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 454

Query: 541  ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 708
                ++P      V + PQ T+ DIGGL++  +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 455  ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 514

Query: 709  ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 888
            + YGPPG GKTLLAKA+AN+  A F+ + G EL+  + G+    VRE+F  A + AP ++
Sbjct: 515  LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574

Query: 889  FIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALI 1068
            F DE+D+I   R  +   G     R + ++L ++DG  +  +V +I ATNR   +DPA++
Sbjct: 575  FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634

Query: 1069 IPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 1248
             P R+D+ I  PLPDEK+   I   +  +  +A DV L+ L    +  SGAD+  IC  A
Sbjct: 635  RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694

Query: 1249 GLMALRE 1269
              +A+RE
Sbjct: 695  CKLAIRE 701


>ref|XP_002694913.1| PREDICTED: AFG3(ATPase family gene 3)-like 1-like [Bos taurus].
          Length = 845

 Score =  182 bits (463), Expect = 5e-46
 Identities = 99/229 (43%), Positives = 140/229 (61%), Gaps = 4/229 (1%)
 Frame = +1

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            +AD+ G +    EI E V   L +P+ Y+++G K PKG +L GPPGTGKTLLAKA A + 
Sbjct: 277  FADVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGALLTGPPGTGKTLLAKATAGEA 335

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
               F+ V GSE ++ ++G GP  VR++F +A ++AP I+F+DEIDAIG KR   + GG+ 
Sbjct: 336  GVPFITVNGSEFLEMFVGVGPARVRDMFALARKNAPCILFVDEIDAIGRKRGRGHFGGQS 395

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E   T+ +LL ++DGF+S  +V V+  TNR   LDPAL+ P R DR+I    PD K    
Sbjct: 396  EQENTLNQLLVEMDGFNSTTNVVVLAGTNRPDVLDPALMRPGRFDRQIYIGPPDIKGRSS 455

Query: 1132 IFHIHTSRMTLADDVTLD----DLIMAKDDLSGADIKAICTEAGLMALR 1266
            IF +H   + L + ++ D     L       +GADI  +C EA L+A R
Sbjct: 456  IFRVHLRPLKLDESLSKDALARKLAALTPGFTGADISNVCNEAALIAAR 504


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,612,797
Number of extensions: 1363911
Number of successful extensions: 5053
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 4927
Number of HSP's successfully gapped: 61
Length of query: 469
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,174,046
Effective search space: 5145178698
Effective search space used: 5145178698
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_848524.1| PREDICTED: similar to peptidase (prosome, macro...   686   0.0  
Alignment   gi|XP_856279.1| PREDICTED: similar to peptidase (prosome, macro...   623   e-179
Alignment   gi|XP_533670.1| PREDICTED: similar to 26S protease regulatory s...   372   e-103
Alignment   gi|XP_867041.1| PREDICTED: similar to 26S protease regulatory s...   366   e-101
Alignment   gi|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase sub...   363   e-100
Alignment   gi|XP_867031.1| PREDICTED: similar to 26S protease regulatory s...   362   e-100
Alignment   gi|XP_849002.1| PREDICTED: similar to 26S protease regulatory s...   335   8e-92
Alignment   gi|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (S...   322   7e-88
Alignment   gi|XP_860742.1| PREDICTED: similar to 26S protease regulatory s...   320   3e-87
Alignment   gi|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (S...   315   7e-86

>ref|XP_848524.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
            ATPase 1 isoform 2 [Canis familiaris].
          Length = 440

 Score =  686 bits (1769), Expect(2) = 0.0
 Identities = 356/394 (90%), Positives = 365/394 (92%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPL+EKQEEERS VDDLR
Sbjct: 44   DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLKEKQEEERSTVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLE GCSVLLNHKVHAVIGVL
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLELGCSVLLNHKVHAVIGVL 163

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            MDDTDPLV VMKVEK PQETYADI  LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 164  MDDTDPLVIVMKVEKTPQETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGS+LIQKYLG+GPKL+RELFRV EEHAPSIVF
Sbjct: 224  LYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVF 283

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 284  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 343

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLAD VTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 344  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAG 403

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 404  LMALRERRMKVTNEDFKKSKENVLYRKQEGTPEG 437



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 430  KQEGTPEGLYL 440


>ref|XP_856279.1| PREDICTED: similar to peptidase (prosome, macropain) 26S subunit,
            ATPase 1 isoform 3 [Canis familiaris].
          Length = 414

 Score =  623 bits (1607), Expect(2) = e-179
 Identities = 331/394 (84%), Positives = 340/394 (86%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPL+EKQEEERS VDDLR
Sbjct: 44   DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLKEKQEEERSTVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLE GCSV             
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLELGCSV------------- 150

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
                         EK PQETYADI  LDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 151  -------------EKTPQETYADIRALDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 197

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGS+LIQKYLG+GPKL+RELFRV EEHAPSIVF
Sbjct: 198  LYGPPGTGKTLLAKAVANQTSATFLRVVGSQLIQKYLGNGPKLIRELFRVVEEHAPSIVF 257

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 258  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 317

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLAD VTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 318  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADAVTLDDLIMAKDDLSGADIKAICTEAG 377

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 378  LMALRERRMKVTNEDFKKSKENVLYRKQEGTPEG 411



 Score = 23.9 bits (50), Expect(2) = e-179
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 404  KQEGTPEGLYL 414


>ref|XP_533670.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 1 [Canis familiaris].
          Length = 418

 Score =  372 bits (954), Expect = e-103
 Identities = 178/351 (50%), Positives = 266/351 (75%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +R
Sbjct: 224  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 283

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  + 
Sbjct: 284  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

Query: 1132 IFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
            IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 394


>ref|XP_867041.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 4 [Canis familiaris].
          Length = 419

 Score =  366 bits (939), Expect = e-101
 Identities = 177/352 (50%), Positives = 266/352 (75%), Gaps = 1/352 (0%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  S-ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
            + + F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +
Sbjct: 224  TDSAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGAD 283

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNK 1128
            RE++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  +
Sbjct: 284  REVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKR 343

Query: 1129 RIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
             IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  LIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 395


>ref|XP_867021.1| PREDICTED: similar to proteasome 26S ATPase subunit 4 isoform 2
            isoform 2 [Canis familiaris].
          Length = 387

 Score =  363 bits (931), Expect = e-100
 Identities = 172/327 (52%), Positives = 247/327 (75%)
 Frame = +1

Query: 304  LEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPG 483
            LE+     + +V  ++  P+ +G   E +D N AIV ++ GS +YV ILS +D++LL+P 
Sbjct: 37   LEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPN 96

Query: 484  CSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTH 663
             SV L+   +A++ VL  + D  + ++  ++ P   YADIGG+D Q QE++E+VELPLTH
Sbjct: 97   ASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTH 156

Query: 664  PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLV 843
             E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++V
Sbjct: 157  FELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMV 216

Query: 844  RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKV 1023
            R++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +RE++R +LELLNQ+DGFD   +VKV
Sbjct: 217  RDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKV 276

Query: 1024 IMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAK 1203
            IMATNR  TLDPAL+ P R+DRKIEFPLPD +  + IF   TS+M L+++V L+D +   
Sbjct: 277  IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARP 336

Query: 1204 DDLSGADIKAICTEAGLMALRERMMIV 1284
            D +SGADI +IC E+G++A+RE   IV
Sbjct: 337  DKISGADINSICQESGMLAVRENRYIV 363


>ref|XP_867031.1| PREDICTED: similar to 26S protease regulatory subunit 6B (MIP224)
            (MB67 interacting protein) (TAT-binding protein-7)
            (TBP-7) isoform 3 [Canis familiaris].
          Length = 433

 Score =  362 bits (929), Expect = e-100
 Identities = 178/366 (48%), Positives = 266/366 (72%), Gaps = 15/366 (4%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEM---------------GIKPPKGVILYGPP 726
            YADIGG+D Q QE++E+VELPLTH E Y+++               GI PP+GV++YGPP
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQLVKGLPALSFTSAFQIGIDPPRGVLMYGPP 223

Query: 727  GTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 906
            G GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEID
Sbjct: 224  GCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEID 283

Query: 907  AIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRID 1086
            AI TKR+D+ +G +RE++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+D
Sbjct: 284  AIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLD 343

Query: 1087 RKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            RKIEFPLPD +  + IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+R
Sbjct: 344  RKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR 403

Query: 1267 ERMMIV 1284
            E   IV
Sbjct: 404  ENRYIV 409


>ref|XP_849002.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) [Canis familiaris].
          Length = 403

 Score =  335 bits (858), Expect = 8e-92
 Identities = 159/336 (47%), Positives = 234/336 (69%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHY 438
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D   A++ TS    ++
Sbjct: 38   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDGKCAVIKTSTRQTYF 97

Query: 439  VSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDN 618
            + ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P E Y+DIGGLD 
Sbjct: 98   LPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDK 157

Query: 619  QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 798
            QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A QT ATFL++ G
Sbjct: 158  QIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAG 217

Query: 799  SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLEL 978
             +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DA GTKR+DS   G+RE++RTMLEL
Sbjct: 218  PQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDATGTKRFDSEKAGDREVQRTMLEL 277

Query: 979  LNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRM 1158
            LNQLDGF     VKVI ATNR+  LDPAL+   R+D+KIEFP+P+E+   RI  IH+ +M
Sbjct: 278  LNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDQKIEFPMPNEEARARIMQIHSRKM 337

Query: 1159 TLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
             ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 338  NVSPDVNYEELARCMDDFNGAQCKAVCVEAGMIALR 373


>ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis
            familiaris].
          Length = 406

 Score =  322 bits (824), Expect = 7e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 80   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 140  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 200  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 259

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 260  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 319

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 320  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 379


>ref|XP_860742.1| PREDICTED: similar to 26S protease regulatory subunit 6A (TAT-binding
            protein 1) (TBP-1) (Spermatogenic cell/sperm-associated
            TAT-binding protein homolog SATA) isoform 3 [Canis
            familiaris].
          Length = 371

 Score =  320 bits (819), Expect = 3e-87
 Identities = 151/288 (52%), Positives = 210/288 (72%)
 Frame = +1

Query: 403  AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAP 582
            A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V  M+V++ P
Sbjct: 54   AVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERP 113

Query: 583  QETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 762
             E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGKTLLA+A A
Sbjct: 114  TEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACA 173

Query: 763  NQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG 942
             QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGTKR+DS   
Sbjct: 174  AQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKA 233

Query: 943  GEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKT 1122
            G+RE++RTMLELLNQLDGF     VKVI ATNR+  LDPAL+   R+DRKIEFP+P+E+ 
Sbjct: 234  GDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEA 293

Query: 1123 NKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
              RI  IH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 294  RARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 341


>ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis
            familiaris].
          Length = 327

 Score =  315 bits (807), Expect = 7e-86
 Identities = 157/300 (52%), Positives = 211/300 (70%)
 Frame = +1

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 1    MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 60

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 61   VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 120

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 121  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 180

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 181  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 240

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 241  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 300


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,064,729
Number of extensions: 1419562
Number of successful extensions: 5866
Number of sequences better than 1.0e-05: 75
Number of HSP's gapped: 5594
Number of HSP's successfully gapped: 91
Length of query: 469
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 363
Effective length of database: 15,340,888
Effective search space: 5568742344
Effective search space used: 5568742344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].    711   0.0  
Alignment   gi|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [H...   372   e-103
Alignment   gi|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [H...   363   e-100
Alignment   gi|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapien...   326   3e-89
Alignment   gi|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 ...   322   7e-88
Alignment   gi|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Ho...   322   7e-88
Alignment   gi|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Ho...   293   3e-79
Alignment   gi|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapie...   287   1e-77
Alignment   gi|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapi...   211   1e-54
Alignment   gi|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo...   206   6e-53

>ref|NP_002793.2| 26S protease regulatory subunit 4 [Homo sapiens].
          Length = 440

 Score =  711 bits (1834), Expect(2) = 0.0
 Identities = 368/394 (93%), Positives = 373/394 (94%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR
Sbjct: 44   DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 163

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 164  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF
Sbjct: 224  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 283

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 284  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 343

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 344  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 403

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 404  LMALRERRMKVTNEDFKKSKENVLYKKQEGTPEG 437



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 430  KQEGTPEGLYL 440


>ref|NP_006494.1| 26S protease regulatory subunit 6B isoform 1 [Homo sapiens].
          Length = 418

 Score =  372 bits (954), Expect = e-103
 Identities = 178/351 (50%), Positives = 266/351 (75%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +R
Sbjct: 224  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 283

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  + 
Sbjct: 284  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

Query: 1132 IFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
            IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 394


>ref|NP_694546.1| 26S protease regulatory subunit 6B isoform 2 [Homo sapiens].
          Length = 387

 Score =  363 bits (931), Expect = e-100
 Identities = 172/327 (52%), Positives = 247/327 (75%)
 Frame = +1

Query: 304  LEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPG 483
            LE+     + +V  ++  P+ +G   E +D N AIV ++ GS +YV ILS +D++LL+P 
Sbjct: 37   LEDLYSRYKEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPN 96

Query: 484  CSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTH 663
             SV L+   +A++ VL  + D  + ++  ++ P   YADIGG+D Q QE++E+VELPLTH
Sbjct: 97   ASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTH 156

Query: 664  PEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLV 843
             E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T+A F+RVVGSE +QKYLG+GP++V
Sbjct: 157  FELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMV 216

Query: 844  RELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKV 1023
            R++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +RE++R +LELLNQ+DGFD   +VKV
Sbjct: 217  RDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKV 276

Query: 1024 IMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAK 1203
            IMATNR  TLDPAL+ P R+DRKIEFPLPD +  + IF   TS+M L+++V L+D +   
Sbjct: 277  IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARP 336

Query: 1204 DDLSGADIKAICTEAGLMALRERMMIV 1284
            D +SGADI +IC E+G++A+RE   IV
Sbjct: 337  DKISGADINSICQESGMLAVRENRYIV 363


>ref|NP_002795.2| 26S protease regulatory subunit 6A [Homo sapiens].
          Length = 439

 Score =  326 bits (836), Expect = 3e-89
 Identities = 161/356 (45%), Positives = 236/356 (66%), Gaps = 20/356 (5%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 402
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 54   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 113

Query: 403  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 558
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 114  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 173

Query: 559  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 738
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 174  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233

Query: 739  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 918
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 234  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293

Query: 919  KRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIE 1098
            KR+DS   G+RE++RTMLELLNQLDGF     VKVI ATNR+  LDPAL+   R+DRKIE
Sbjct: 294  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353

Query: 1099 FPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            FP+P+E+   RI  IH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 354  FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 409


>ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens].
          Length = 398

 Score =  322 bits (824), Expect = 7e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 12   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 71

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 72   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 131

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 132  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 191

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 192  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 251

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 252  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 311

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 312  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 371


>ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens].
          Length = 406

 Score =  322 bits (824), Expect = 7e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 80   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 140  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 200  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 259

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 260  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 319

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 320  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 379


>ref|NP_002794.1| 26S protease regulatory subunit 7 isoform 1 [Homo sapiens].
          Length = 433

 Score =  293 bits (749), Expect = 3e-79
 Identities = 148/314 (47%), Positives = 211/314 (67%), Gaps = 4/314 (1%)
 Frame = +1

Query: 358  PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 525
            P+ V    +II    +D   I++    ++  V +   V    +E G  V ++   + +  
Sbjct: 92   PLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHI 151

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
             L    DP VT+M+VE+ P  TY+D+GG   QI++++E VE PL HPE +  +GI+PPKG
Sbjct: 152  PLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKG 211

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            V+L+GPPGTGKTL A+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF +A      +
Sbjct: 212  VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACL 271

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +F DEIDAIG  R+D  +GG+ E++RTMLEL+NQLDGFD  G++KV+MATNR  TLDPAL
Sbjct: 272  IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL 331

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
            + P R+DRKIEF LPD +    IF IH   M++  D+  + L     + +GA+I+++CTE
Sbjct: 332  MRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTE 391

Query: 1246 AGLMALRERMMIVT 1287
            AG+ A+R R  I T
Sbjct: 392  AGMFAIRARRKIAT 405


>ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens].
          Length = 403

 Score =  287 bits (735), Expect = 1e-77
 Identities = 142/327 (43%), Positives = 213/327 (65%)
 Frame = +1

Query: 286  QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK 465
            +EQ+K L ++ E+  + +  L+     VG + + + +   IV  + G  + V     +DK
Sbjct: 44   REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 103

Query: 466  DLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESV 645
              L+PG  V L+     ++  L  + DPLV  M  E     +Y++IGGL  QI+E++E +
Sbjct: 104  SKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVI 163

Query: 646  ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 825
            ELPLT+PE ++ +GI PPKG +LYGPPGTGKTLLA+AVA+Q    FL+VV S ++ KY+G
Sbjct: 164  ELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIG 223

Query: 826  DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDS 1005
            +  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REI+RT++ELLNQ+DGFD+
Sbjct: 224  ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 283

Query: 1006 GGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLD 1185
               VK+IMATNR  TLDPAL+ P R+DRKI   LP+E+    I  IH   +T   ++  +
Sbjct: 284  LHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYE 343

Query: 1186 DLIMAKDDLSGADIKAICTEAGLMALR 1266
             ++   D  +GAD++ +CTEAG+ A+R
Sbjct: 344  AIVKLSDGFNGADLRNVCTEAGMFAIR 370


>ref|NP_660208.2| spermatogenesis-associated protein 5 [Homo sapiens].
          Length = 893

 Score =  211 bits (537), Expect = 1e-54
 Identities = 109/246 (44%), Positives = 158/246 (64%)
 Frame = +1

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            M+D  P          P  +++DIGGL++   +++++VE PL HPE +  MGI+PPKGV+
Sbjct: 606  MNDIRPSAMREIAIDVPNVSWSDIGGLESIKLKLEQAVEWPLKHPESFIRMGIQPPKGVL 665

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPG  KT++AKA+AN++   FL + G EL+ KY+G+  + VRE FR A   APSI+F
Sbjct: 666  LYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVRETFRKARAVAPSIIF 725

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
             DE+DA+  +R  S+ G      R + +LL ++DG +   DV ++ ATNR   +D AL+ 
Sbjct: 726  FDELDALAVER-GSSLGAGNVADRVLAQLLTEMDGIEQLKDVTILAATNRPDRIDKALMR 784

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDR I  PLPD  T + IF +    M ++++V LD+LI+  D  SGA+I A+C EA 
Sbjct: 785  PGRIDRIIYVPLPDAATRREIFKLQFHSMPVSNEVDLDELILQTDAYSGAEIVAVCREAA 844

Query: 1252 LMALRE 1269
            L+AL E
Sbjct: 845  LLALEE 850



 Score =  165 bits (418), Expect = 8e-41
 Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 1/227 (0%)
 Frame = +1

Query: 589  TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 768
            TY  IGGL +Q++ I+E +ELPL  PE ++  GI  P+GV+LYGPPGTGKT++A+AVAN+
Sbjct: 351  TYDMIGGLSSQLKAIREIIELPLKQPELFKSYGIPAPRGVLLYGPPGTGKTMIARAVANE 410

Query: 769  TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
              A    + G E+I K+ G+    +R++F  A    PSI+FIDE+DA+  KR  + +  E
Sbjct: 411  VGAYVSVINGPEIISKFYGETEAKLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVE 470

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNK 1128
            + +  ++L L++ +    S G V V+ ATNR   LD AL  P R D++IE  +P+ +   
Sbjct: 471  KRVVASLLTLMDGIGSEVSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRL 530

Query: 1129 RIFHIHTSRMT-LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
             I      R+  L  +  L  L  +     GAD+K +C EAGL ALR
Sbjct: 531  DILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKVLCNEAGLCALR 577


>ref|NP_009057.1| transitional endoplasmic reticulum ATPase [Homo sapiens].
          Length = 806

 Score =  206 bits (523), Expect = 6e-53
 Identities = 109/255 (42%), Positives = 160/255 (62%)
 Frame = +1

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
            V+  + +P+    + E   +  Y DIGG   Q+ +IKE VELPL HP  ++ +G+KPP+G
Sbjct: 181  VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            ++LYGPPGTGKTL+A+AVAN+T A F  + G E++ K  G+    +R+ F  AE++AP+I
Sbjct: 241  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +FIDE+DAI  KR    + GE E RR + +LL  +DG      V V+ ATNR  ++DPAL
Sbjct: 301  IFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
                R DR+++  +PD      I  IHT  M LADDV L+ +        GAD+ A+C+E
Sbjct: 358  RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417

Query: 1246 AGLMALRERMMIVTM 1290
            A L A+R++M ++ +
Sbjct: 418  AALQAIRKKMDLIDL 432



 Score =  189 bits (479), Expect = 7e-48
 Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 9/307 (2%)
 Frame = +1

Query: 376  LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 540
            LE++ ++ H  V   + +    + L  + K  DL++     + + +V   + V MDD   
Sbjct: 396  LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 454

Query: 541  ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 708
                ++P      V + PQ T+ DIGGL++  +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 455  ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 514

Query: 709  ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 888
            + YGPPG GKTLLAKA+AN+  A F+ + G EL+  + G+    VRE+F  A + AP ++
Sbjct: 515  LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574

Query: 889  FIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALI 1068
            F DE+D+I   R  +   G     R + ++L ++DG  +  +V +I ATNR   +DPA++
Sbjct: 575  FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634

Query: 1069 IPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 1248
             P R+D+ I  PLPDEK+   I   +  +  +A DV L+ L    +  SGAD+  IC  A
Sbjct: 635  RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694

Query: 1249 GLMALRE 1269
              +A+RE
Sbjct: 695  CKLAIRE 701


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,063,715
Number of extensions: 1398076
Number of successful extensions: 5381
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 5246
Number of HSP's successfully gapped: 57
Length of query: 469
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,802,980
Effective search space: 5373481740
Effective search space used: 5373481740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].    711   0.0  
Alignment   gi|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculu...   372   e-103
Alignment   gi|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculu...   326   2e-89
Alignment   gi|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].    322   6e-88
Alignment   gi|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].    293   3e-79
Alignment   gi|NP_080235.2| 26S protease regulatory subunit 10B [Mus muscul...   287   1e-77
Alignment   gi|NP_001156983.1| spermatogenesis-associated protein 5 isoform...   215   6e-56
Alignment   gi|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 ...   215   6e-56
Alignment   gi|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus ...   206   5e-53
Alignment   gi|NP_473411.2| AFG3-like protein 1 [Mus musculus].                  183   3e-46

>ref|NP_032973.1| 26S protease regulatory subunit 4 [Mus musculus].
          Length = 440

 Score =  711 bits (1834), Expect(2) = 0.0
 Identities = 368/394 (93%), Positives = 373/394 (94%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR
Sbjct: 44   DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 163

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 164  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF
Sbjct: 224  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 283

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 284  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 343

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 344  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 403

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 404  LMALRERRMKVTNEDFKKSKENVLYKKQEGTPEG 437



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 430  KQEGTPEGLYL 440


>ref|NP_036004.2| 26S protease regulatory subunit 6B [Mus musculus].
          Length = 418

 Score =  372 bits (954), Expect = e-103
 Identities = 178/351 (50%), Positives = 266/351 (75%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +R
Sbjct: 224  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 283

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  + 
Sbjct: 284  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

Query: 1132 IFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
            IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 394


>ref|NP_032974.2| 26S protease regulatory subunit 6A [Mus musculus].
          Length = 442

 Score =  326 bits (836), Expect = 2e-89
 Identities = 161/356 (45%), Positives = 236/356 (66%), Gaps = 20/356 (5%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 402
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 57   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 116

Query: 403  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 558
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 117  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 176

Query: 559  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 738
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 177  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 236

Query: 739  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 918
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 237  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 296

Query: 919  KRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIE 1098
            KR+DS   G+RE++RTMLELLNQLDGF     VKVI ATNR+  LDPAL+   R+DRKIE
Sbjct: 297  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 356

Query: 1099 FPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            FP+P+E+   RI  IH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 357  FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 412


>ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus].
          Length = 406

 Score =  322 bits (824), Expect = 6e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 80   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 140  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 200  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 259

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 260  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 319

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 320  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 379


>ref|NP_035318.1| 26S protease regulatory subunit 7 [Mus musculus].
          Length = 475

 Score =  293 bits (749), Expect = 3e-79
 Identities = 148/314 (47%), Positives = 211/314 (67%), Gaps = 4/314 (1%)
 Frame = +1

Query: 358  PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 525
            P+ V    +II    +D   I++    ++  V +   V    +E G  V ++   + +  
Sbjct: 134  PLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHI 193

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
             L    DP VT+M+VE+ P  TY+D+GG   QI++++E VE PL HPE +  +GI+PPKG
Sbjct: 194  PLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKG 253

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            V+L+GPPGTGKTL A+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF +A      +
Sbjct: 254  VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACL 313

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +F DEIDAIG  R+D  +GG+ E++RTMLEL+NQLDGFD  G++KV+MATNR  TLDPAL
Sbjct: 314  IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL 373

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
            + P R+DRKIEF LPD +    IF IH   M++  D+  + L     + +GA+I+++CTE
Sbjct: 374  MRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTE 433

Query: 1246 AGLMALRERMMIVT 1287
            AG+ A+R R  I T
Sbjct: 434  AGMFAIRARRKIAT 447


>ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus].
          Length = 389

 Score =  287 bits (735), Expect = 1e-77
 Identities = 142/327 (43%), Positives = 213/327 (65%)
 Frame = +1

Query: 286  QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK 465
            +EQ+K L ++ E+  + +  L+     VG + + + +   IV  + G  + V     +DK
Sbjct: 30   REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 89

Query: 466  DLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESV 645
              L+PG  V L+     ++  L  + DPLV  M  E     +Y++IGGL  QI+E++E +
Sbjct: 90   SKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVI 149

Query: 646  ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 825
            ELPLT+PE ++ +GI PPKG +LYGPPGTGKTLLA+AVA+Q    FL+VV S ++ KY+G
Sbjct: 150  ELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIG 209

Query: 826  DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDS 1005
            +  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REI+RT++ELLNQ+DGFD+
Sbjct: 210  ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 269

Query: 1006 GGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLD 1185
               VK+IMATNR  TLDPAL+ P R+DRKI   LP+E+    I  IH   +T   ++  +
Sbjct: 270  LHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYE 329

Query: 1186 DLIMAKDDLSGADIKAICTEAGLMALR 1266
             ++   D  +GAD++ +CTEAG+ A+R
Sbjct: 330  AIVKLSDGFNGADLRNVCTEAGMFAIR 356


>ref|NP_001156983.1| spermatogenesis-associated protein 5 isoform 1 [Mus musculus].
          Length = 893

 Score =  215 bits (548), Expect = 6e-56
 Identities = 109/248 (43%), Positives = 161/248 (64%)
 Frame = +1

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            M+D  P          P  +++DIGGL+N   ++K++VE PL HP+ +  MGI+PPKGV+
Sbjct: 606  MNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVL 665

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPG  KT++AKA+AN++   FL + G EL+ KY+G+  + VRE+FR A   APSI+F
Sbjct: 666  LYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIF 725

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
             DE+DA+  +R  S+SG      R + +LL ++DG +   +V V+ ATNR   +D AL+ 
Sbjct: 726  FDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMR 784

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDR I  PLPD  T + I ++    M ++++V LD+L++  D  SGA+I A+C EA 
Sbjct: 785  PGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAA 844

Query: 1252 LMALRERM 1275
            L+AL E +
Sbjct: 845  LLALEENI 852



 Score =  166 bits (421), Expect = 3e-41
 Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 8/234 (3%)
 Frame = +1

Query: 589  TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 768
            TY  IGGL++Q++ I+E +ELPL  PE ++  GI  P+G++LYGPPGTGKT++A+AVAN+
Sbjct: 351  TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 410

Query: 769  TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
              A    + G E+I K+ G+    +R++F  A    PSI+FIDE+DA+  KR  + S  E
Sbjct: 411  VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 470

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPD----- 1113
            + +  ++L L++ +    S G V V+ ATNR Q LD AL  P R D++IE  +P+     
Sbjct: 471  KRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRL 530

Query: 1114 ---EKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
               +K  +R+ H+ T    L        L        GAD+KA+C EAGL ALR
Sbjct: 531  DILQKLLRRVPHLLTKAELLR-------LANNAHGYVGADLKALCNEAGLHALR 577


>ref|NP_067318.2| spermatogenesis-associated protein 5 isoform 2 [Mus musculus].
          Length = 892

 Score =  215 bits (548), Expect = 6e-56
 Identities = 109/248 (43%), Positives = 161/248 (64%)
 Frame = +1

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            M+D  P          P  +++DIGGL+N   ++K++VE PL HP+ +  MGI+PPKGV+
Sbjct: 605  MNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPKSFNRMGIQPPKGVL 664

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPG  KT++AKA+AN++   FL + G EL+ KY+G+  + VRE+FR A   APSI+F
Sbjct: 665  LYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIF 724

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
             DE+DA+  +R  S+SG      R + +LL ++DG +   +V V+ ATNR   +D AL+ 
Sbjct: 725  FDELDALAVER-GSSSGAGNVADRVLAQLLTEMDGIEQLKNVTVLAATNRPDRIDKALMR 783

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDR I  PLPD  T + I ++    M ++++V LD+L++  D  SGA+I A+C EA 
Sbjct: 784  PGRIDRIIYVPLPDAATRREILNLQFHSMPISNEVDLDELVLQTDTYSGAEIIAVCKEAA 843

Query: 1252 LMALRERM 1275
            L+AL E +
Sbjct: 844  LLALEENI 851



 Score =  166 bits (421), Expect = 3e-41
 Identities = 96/234 (41%), Positives = 140/234 (59%), Gaps = 8/234 (3%)
 Frame = +1

Query: 589  TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 768
            TY  IGGL++Q++ I+E +ELPL  PE ++  GI  P+G++LYGPPGTGKT++A+AVAN+
Sbjct: 350  TYDMIGGLNSQLKAIREIIELPLKQPELFKSYGIPAPRGLLLYGPPGTGKTMIARAVANE 409

Query: 769  TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
              A    + G E+I K+ G+    +R++F  A    PSI+FIDE+DA+  KR  + S  E
Sbjct: 410  VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQSEVE 469

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPD----- 1113
            + +  ++L L++ +    S G V V+ ATNR Q LD AL  P R D++IE  +P+     
Sbjct: 470  KRVVASLLTLMDGIGSEGSEGRVLVLGATNRPQALDAALRRPGRFDKEIEIGIPNAQDRL 529

Query: 1114 ---EKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
               +K  +R+ H+ T    L        L        GAD+KA+C EAGL ALR
Sbjct: 530  DILQKLLRRVPHLLTKAELLR-------LANNAHGYVGADLKALCNEAGLHALR 576


>ref|NP_033529.3| transitional endoplasmic reticulum ATPase [Mus musculus].
          Length = 806

 Score =  206 bits (523), Expect = 5e-53
 Identities = 109/255 (42%), Positives = 160/255 (62%)
 Frame = +1

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
            V+  + +P+    + E   +  Y DIGG   Q+ +IKE VELPL HP  ++ +G+KPP+G
Sbjct: 181  VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            ++LYGPPGTGKTL+A+AVAN+T A F  + G E++ K  G+    +R+ F  AE++AP+I
Sbjct: 241  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +FIDE+DAI  KR    + GE E RR + +LL  +DG      V V+ ATNR  ++DPAL
Sbjct: 301  IFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
                R DR+++  +PD      I  IHT  M LADDV L+ +        GAD+ A+C+E
Sbjct: 358  RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417

Query: 1246 AGLMALRERMMIVTM 1290
            A L A+R++M ++ +
Sbjct: 418  AALQAIRKKMDLIDL 432



 Score =  189 bits (479), Expect = 6e-48
 Identities = 108/307 (35%), Positives = 174/307 (56%), Gaps = 9/307 (2%)
 Frame = +1

Query: 376  LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 540
            LE++ ++ H  V   + +    + L  + K  DL++     + + +V   + V MDD   
Sbjct: 396  LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 454

Query: 541  ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 708
                ++P      V + PQ T+ DIGGL++  +E++E V+ P+ HP+ + + G+ P KGV
Sbjct: 455  ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGV 514

Query: 709  ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 888
            + YGPPG GKTLLAKA+AN+  A F+ + G EL+  + G+    VRE+F  A + AP ++
Sbjct: 515  LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574

Query: 889  FIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALI 1068
            F DE+D+I   R  +   G     R + ++L ++DG  +  +V +I ATNR   +DPA++
Sbjct: 575  FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634

Query: 1069 IPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 1248
             P R+D+ I  PLPDEK+   I   +  +  +A DV L+ L    +  SGAD+  IC  A
Sbjct: 635  RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694

Query: 1249 GLMALRE 1269
              +A+RE
Sbjct: 695  CKLAIRE 701


>ref|NP_473411.2| AFG3-like protein 1 [Mus musculus].
          Length = 789

 Score =  183 bits (464), Expect = 3e-46
 Identities = 100/229 (43%), Positives = 139/229 (60%), Gaps = 4/229 (1%)
 Frame = +1

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            +AD+ G +    EI E V   L +P+ Y+++G K PKG +L GPPGTGKTLLAKA A + 
Sbjct: 299  FADVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAMLTGPPGTGKTLLAKATAGEA 357

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +  F+ V GSE ++ ++G GP  VR++F +A +HAP I+FIDEIDAIG KR   + GG+ 
Sbjct: 358  NVPFITVNGSEFLEMFVGVGPARVRDMFAMARKHAPCILFIDEIDAIGRKRGRGHLGGQS 417

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E   T+ ++L ++DGF+S  +V V+  TNR   LDPAL  P R DR+I    PD K    
Sbjct: 418  EQENTLNQMLVEMDGFNSSTNVVVLAGTNRPDILDPALTRPGRFDRQIYIGPPDIKGRSS 477

Query: 1132 IFHIHTSRM----TLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            IF +H   +    +L+ D     L       +GADI  +C EA L+A R
Sbjct: 478  IFKVHLRPLKLDGSLSKDALSRKLAALTPGFTGADISNVCNEAALIAAR 526


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,188,875
Number of extensions: 1178476
Number of successful extensions: 4480
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 4304
Number of HSP's successfully gapped: 43
Length of query: 469
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 364
Effective length of database: 12,463,779
Effective search space: 4536815556
Effective search space used: 4536815556
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4...   711   0.0  
Alignment   gi|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4...   652   0.0  
Alignment   gi|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease...   371   e-103
Alignment   gi|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6...   326   2e-89
Alignment   gi|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].      322   4e-88
Alignment   gi|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7...   295   4e-80
Alignment   gi|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7...   293   2e-79
Alignment   gi|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 1...   287   9e-78
Alignment   gi|NP_001171384.1| spermatogenesis-associated protein 5 [Sus sc...   217   1e-56
Alignment   gi|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus ...   206   3e-53

>ref|XP_001928020.1| PREDICTED: 26S protease regulatory subunit 4 isoform 1 [Sus scrofa].
          Length = 440

 Score =  711 bits (1834), Expect(2) = 0.0
 Identities = 368/394 (93%), Positives = 373/394 (94%), Gaps = 1/394 (0%)
 Frame = +1

Query: 172  DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 351
            DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR
Sbjct: 44   DAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLR 103

Query: 352  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 531
            GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL
Sbjct: 104  GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVL 163

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI
Sbjct: 164  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 223

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF
Sbjct: 224  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 283

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
            IDEIDAIGTKRYDSNSGGEREI+RTMLELLNQLDGFDS GDVKVIMATNRI+TLDPALI 
Sbjct: 284  IDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIR 343

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDRKIEFPLPDEKT KRIF IHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG
Sbjct: 344  PGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 403

Query: 1252 LMALRERMMIVTMNTSHNLKK-MFFIKNTGHP*G 1350
            LMALRER M VT       K+ + + K  G P G
Sbjct: 404  LMALRERRMKVTNEDFKKSKENVLYKKQEGTPEG 437



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 430  KQEGTPEGLYL 440


>ref|XP_003356821.1| PREDICTED: 26S protease regulatory subunit 4 isoform 2 [Sus scrofa].
          Length = 367

 Score =  652 bits (1682), Expect(2) = 0.0
 Identities = 338/364 (92%), Positives = 343/364 (94%), Gaps = 1/364 (0%)
 Frame = +1

Query: 262  MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYV 441
            MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYV
Sbjct: 1    MEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYV 60

Query: 442  SILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQ 621
            SILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQ
Sbjct: 61   SILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQ 120

Query: 622  IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 801
            IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS
Sbjct: 121  IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 180

Query: 802  ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELL 981
            ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREI+RTMLELL
Sbjct: 181  ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL 240

Query: 982  NQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMT 1161
            NQLDGFDS GDVKVIMATNRI+TLDPALI P RIDRKIEFPLPDEKT KRIF IHTSRMT
Sbjct: 241  NQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMT 300

Query: 1162 LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVTMNTSHNLKK-MFFIKNTG 1338
            LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRER M VT       K+ + + K  G
Sbjct: 301  LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEG 360

Query: 1339 HP*G 1350
             P G
Sbjct: 361  TPEG 364



 Score = 23.9 bits (50), Expect(2) = 0.0
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 1328 KTQGTPEGLYL 1360
            K +GTPEGLYL
Sbjct: 357  KQEGTPEGLYL 367


>ref|XP_003355960.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
            6B-like [Sus scrofa].
          Length = 418

 Score =  371 bits (953), Expect = e-103
 Identities = 178/351 (50%), Positives = 266/351 (75%)
 Frame = +1

Query: 232  KLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIV 411
            KL++  ++L ++EE+I++++  K L+++    + +V  ++  P+ +G   E +D N AIV
Sbjct: 46   KLQQELEFLEVQEEYIKDEQ--KNLKKEFLHAQXEVKRIQSIPLVIGQFLEAVDQNTAIV 103

Query: 412  STSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQET 591
             ++ GS +YV ILS +D++LL+P  SV L+   +A++ VL  + D  + ++  ++ P   
Sbjct: 104  GSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVM 163

Query: 592  YADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 771
            YADIGG+D Q QE++E+VELPLTH E Y+++GI PP+GV++YGPPG GKT+LAKAVA+ T
Sbjct: 164  YADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223

Query: 772  SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGER 951
            +A F+RVVGSE +QKYLG+GP++VR++FR+A+E+AP+I+FIDEIDAI TKR+D+ +G +R
Sbjct: 224  TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADR 283

Query: 952  EIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKR 1131
            E++R +LELLNQ+DGFD   +VKVIMATNR  TLDPAL+ P R+DRKIEFPLPD +  + 
Sbjct: 284  EVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRL 343

Query: 1132 IFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIV 1284
            IF   TS+M L+++V L+D +   D +SGADI +IC E+G++A+RE   IV
Sbjct: 344  IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIV 394


>ref|XP_003122857.1| PREDICTED: 26S protease regulatory subunit 6A [Sus scrofa].
          Length = 439

 Score =  326 bits (836), Expect = 2e-89
 Identities = 161/356 (45%), Positives = 236/356 (66%), Gaps = 20/356 (5%)
 Frame = +1

Query: 259  LMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNH------------ 402
            +M+ E +R   +++ +++K +E   K+   +  P  V  + E++D +             
Sbjct: 54   IMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDL 113

Query: 403  --------AIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVT 558
                    A++ TS    +++ ++  VD + L+PG  V +N   + ++  L  + D  V 
Sbjct: 114  DSQRKGKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVK 173

Query: 559  VMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGK 738
             M+V++ P E Y+DIGGLD QIQE+ E++ LP+ H E +E +GI+PPKGV++YGPPGTGK
Sbjct: 174  AMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGK 233

Query: 739  TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT 918
            TLLA+A A QT ATFL++ G +L+Q ++GDG KLVR+ F +A+E APSI+FIDE+DAIGT
Sbjct: 234  TLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGT 293

Query: 919  KRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIE 1098
            KR+DS   G+RE++RTMLELLNQLDGF     VKVI ATNR+  LDPAL+   R+DRKIE
Sbjct: 294  KRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIE 353

Query: 1099 FPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
            FP+P+E+   RI  IH+ +M ++ DV  ++L    DD +GA  KA+C EAG++ALR
Sbjct: 354  FPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALR 409


>ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa].
          Length = 406

 Score =  322 bits (824), Expect = 4e-88
 Identities = 170/360 (47%), Positives = 235/360 (65%), Gaps = 4/360 (1%)
 Frame = +1

Query: 220  LKLLKLERIKDYLLMEEEFIRN----QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEI 387
            L+   L +I++  L+  +  +N    Q Q   L  K    R ++  L+     VG +   
Sbjct: 20   LRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRA 79

Query: 388  IDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMK 567
            +D    +V      +  V +   +D + + P C V L +  + +  +L +  DPLV++M 
Sbjct: 80   MDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMM 139

Query: 568  VEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLL 747
            VEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLL
Sbjct: 140  VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 199

Query: 748  AKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRY 927
            A+AVA+ T  TF+RV GSEL+QK++G+G ++VRELF +A EHAPSI+F+DEID+IG+ R 
Sbjct: 200  ARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRL 259

Query: 928  DSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPL 1107
            +  SGG+ E++RTMLELLNQLDGF++  ++KVIMATNRI  LD AL+ P RIDRKIEFP 
Sbjct: 260  EGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPP 319

Query: 1108 PDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            P+E+    I  IH+ +M L   + L  +       SGA++K +CTEAG+ ALRER + VT
Sbjct: 320  PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVT 379


>ref|XP_003361115.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 480

 Score =  295 bits (755), Expect = 4e-80
 Identities = 154/351 (43%), Positives = 225/351 (64%), Gaps = 19/351 (5%)
 Frame = +1

Query: 292  QMKPLEEKQEEERSKVDDLRGT---------------PMSVGTLEEII----DDNHAIVS 414
            Q+K +E+  ++   K+++L G                P+ V    +II    +D   I++
Sbjct: 102  QIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLPLQVARCTKIINADSEDPKYIIN 161

Query: 415  TSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETY 594
                ++  V +   V    +E G  V ++   + +   L    DP VT+M+VE+ P  TY
Sbjct: 162  VKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTY 221

Query: 595  ADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 774
            +D+GG   QI++++E VE PL HPE +  +GI+PPKGV+L+GPPGTGKTL A+AVAN+T 
Sbjct: 222  SDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKGVLLFGPPGTGKTLCARAVANRTD 281

Query: 775  ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGERE 954
            A F+RV+GSEL+QKY+G+G ++VRELF +A      ++F DEIDAIG  R+D  +GG+ E
Sbjct: 282  ACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNE 341

Query: 955  IRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRI 1134
            ++RTMLEL+NQLDGFD  G++KV+MATNR  TLDPAL+ P R+DRKIEF LPD +    I
Sbjct: 342  VQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHI 401

Query: 1135 FHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERMMIVT 1287
            F IH   M++  D+  + L     + +GA+I+++CTEAG+ A+R R  I T
Sbjct: 402  FKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIAT 452


>ref|XP_003130292.1| PREDICTED: 26S protease regulatory subunit 7-like [Sus scrofa].
          Length = 433

 Score =  293 bits (749), Expect = 2e-79
 Identities = 148/314 (47%), Positives = 211/314 (67%), Gaps = 4/314 (1%)
 Frame = +1

Query: 358  PMSVGTLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIG 525
            P+ V    +II    +D   I++    ++  V +   V    +E G  V ++   + +  
Sbjct: 92   PLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHI 151

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
             L    DP VT+M+VE+ P  TY+D+GG   QI++++E VE PL HPE +  +GI+PPKG
Sbjct: 152  PLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIEPPKG 211

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            V+L+GPPGTGKTL A+AVAN+T A F+RV+GSEL+QKY+G+G ++VRELF +A      +
Sbjct: 212  VLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACL 271

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +F DEIDAIG  R+D  +GG+ E++RTMLEL+NQLDGFD  G++KV+MATNR  TLDPAL
Sbjct: 272  IFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPAL 331

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
            + P R+DRKIEF LPD +    IF IH   M++  D+  + L     + +GA+I+++CTE
Sbjct: 332  MRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTE 391

Query: 1246 AGLMALRERMMIVT 1287
            AG+ A+R R  I T
Sbjct: 392  AGMFAIRARRKIAT 405


>ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa].
          Length = 403

 Score =  287 bits (735), Expect = 9e-78
 Identities = 142/327 (43%), Positives = 213/327 (65%)
 Frame = +1

Query: 286  QEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK 465
            +EQ+K L ++ E+  + +  L+     VG + + + +   IV  + G  + V     +DK
Sbjct: 44   REQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDK 103

Query: 466  DLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESV 645
              L+PG  V L+     ++  L  + DPLV  M  E     +Y++IGGL  QI+E++E +
Sbjct: 104  SKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVI 163

Query: 646  ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 825
            ELPLT+PE ++ +GI PPKG +LYGPPGTGKTLLA+AVA+Q    FL+VV S ++ KY+G
Sbjct: 164  ELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIG 223

Query: 826  DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDS 1005
            +  +L+RE+F  A +H P I+F+DEIDAIG +R+   +  +REI+RT++ELLNQ+DGFD+
Sbjct: 224  ESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDT 283

Query: 1006 GGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLD 1185
               VK+IMATNR  TLDPAL+ P R+DRKI   LP+E+    I  IH   +T   ++  +
Sbjct: 284  LHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYE 343

Query: 1186 DLIMAKDDLSGADIKAICTEAGLMALR 1266
             ++   D  +GAD++ +CTEAG+ A+R
Sbjct: 344  AIVKLSDGFNGADLRNVCTEAGMFAIR 370


>ref|NP_001171384.1| spermatogenesis-associated protein 5 [Sus scrofa].
          Length = 887

 Score =  217 bits (552), Expect = 1e-56
 Identities = 110/246 (44%), Positives = 160/246 (65%)
 Frame = +1

Query: 532  MDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVI 711
            M+D  P          P  +++DIGGL+N   ++K++VE PL HPE + +MGI+PPKGV+
Sbjct: 600  MNDIRPSAMREVAIDVPNVSWSDIGGLENIKLKLKQAVEWPLKHPESFTQMGIQPPKGVL 659

Query: 712  LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF 891
            LYGPPG  KT++AKA+AN++   FL + G EL+ KY+G+  + VRE+FR A   APSI+F
Sbjct: 660  LYGPPGCSKTMIAKALANESGLNFLAIKGPELMNKYVGESERAVREIFRKARAVAPSIIF 719

Query: 892  IDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALII 1071
             DE+DA+  +R  S+SG      R + +LL  +DG +   DV ++ ATNR   +D AL+ 
Sbjct: 720  FDELDALAVER-GSSSGAGNVADRVLAQLLTXMDGIEQLKDVTILAATNRPDRIDKALMR 778

Query: 1072 PWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAG 1251
            P RIDR I  PLPD  T + IF++    M ++ +V L++L++  D  SGA+I A+C EA 
Sbjct: 779  PGRIDRIIYVPLPDAATRREIFNLQFHSMPISKEVDLNELVLQTDTYSGAEIIAVCREAA 838

Query: 1252 LMALRE 1269
            L+AL E
Sbjct: 839  LLALEE 844



 Score =  174 bits (440), Expect = 1e-43
 Identities = 96/227 (42%), Positives = 140/227 (61%), Gaps = 1/227 (0%)
 Frame = +1

Query: 589  TYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 768
            TY  IGGL++Q++EI+E +ELPL  PE ++  GI PP+GV+LYGPPGTGKT++A+AVAN+
Sbjct: 345  TYDMIGGLNSQLKEIREIIELPLKQPELFKSYGISPPRGVLLYGPPGTGKTMIARAVANE 404

Query: 769  TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGE 948
              A    + G E+I K+ G+    +R++F  A    PSI+FIDE+DA+  KR  + +  E
Sbjct: 405  VGAYVSVINGPEIISKFYGETEARLRQIFAEATLRHPSIIFIDELDALCPKREGAQNEVE 464

Query: 949  REIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALIIPWRIDRKIEFPLPDEKTNK 1128
            + +  ++L L++ +    S G V V+ ATNR   LD AL  P R D++IE  +P+ +   
Sbjct: 465  KRVVASLLTLMDGIGSEGSEGQVLVLGATNRPHALDAALRRPGRFDKEIEIGVPNAQDRL 524

Query: 1129 RIFHIHTSRMT-LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 1266
             I      R+  L  +  L  L  +     GAD+KA+C EAGL ALR
Sbjct: 525  DILQKLLRRVPHLLTEAELLQLANSAHGYVGADLKALCNEAGLYALR 571


>ref|NP_999445.1| transitional endoplasmic reticulum ATPase [Sus scrofa].
          Length = 806

 Score =  206 bits (523), Expect = 3e-53
 Identities = 109/255 (42%), Positives = 160/255 (62%)
 Frame = +1

Query: 526  VLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKG 705
            V+  + +P+    + E   +  Y DIGG   Q+ +IKE VELPL HP  ++ +G+KPP+G
Sbjct: 181  VIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG 240

Query: 706  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSI 885
            ++LYGPPGTGKTL+A+AVAN+T A F  + G E++ K  G+    +R+ F  AE++AP+I
Sbjct: 241  ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300

Query: 886  VFIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPAL 1065
            +FIDE+DAI  KR    + GE E RR + +LL  +DG      V V+ ATNR  ++DPAL
Sbjct: 301  IFIDELDAIAPKR--EKTHGEVE-RRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357

Query: 1066 IIPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTE 1245
                R DR+++  +PD      I  IHT  M LADDV L+ +        GAD+ A+C+E
Sbjct: 358  RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 417

Query: 1246 AGLMALRERMMIVTM 1290
            A L A+R++M ++ +
Sbjct: 418  AALQAIRKKMDLIDL 432



 Score =  187 bits (476), Expect = 9e-48
 Identities = 107/307 (34%), Positives = 174/307 (56%), Gaps = 9/307 (2%)
 Frame = +1

Query: 376  LEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DLLEPGCSVLLNHKVHAVIGVLMDD--- 540
            LE++ ++ H  V   + +    + L  + K  DL++     + + +V   + V MDD   
Sbjct: 396  LEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI-DAEVMNSLAVTMDDFRW 454

Query: 541  ----TDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGV 708
                ++P      V + PQ T+ DIGGL++  +E+++ V+ P+ HP+ + + G+ P KGV
Sbjct: 455  ALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGV 514

Query: 709  ILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 888
            + YGPPG GKTLLAKA+AN+  A F+ + G EL+  + G+    VRE+F  A + AP ++
Sbjct: 515  LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVL 574

Query: 889  FIDEIDAIGTKRYDSNSGGEREIRRTMLELLNQLDGFDSGGDVKVIMATNRIQTLDPALI 1068
            F DE+D+I   R  +   G     R + ++L ++DG  +  +V +I ATNR   +DPA++
Sbjct: 575  FFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAIL 634

Query: 1069 IPWRIDRKIEFPLPDEKTNKRIFHIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEA 1248
             P R+D+ I  PLPDEK+   I   +  +  +A DV L+ L    +  SGAD+  IC  A
Sbjct: 635  RPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694

Query: 1249 GLMALRE 1269
              +A+RE
Sbjct: 695  CKLAIRE 701


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,574,722
Number of extensions: 873760
Number of successful extensions: 3117
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 3043
Number of HSP's successfully gapped: 41
Length of query: 469
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 366
Effective length of database: 8,779,541
Effective search space: 3213312006
Effective search space used: 3213312006
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002648
         (1409 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         387   e-104
Sscrofa_Chr04                                                         343   2e-91

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  387 bits (195), Expect = e-104
 Identities = 195/195 (100%)
 Strand = Plus / Plus

                                                                             
Query: 732       aggtaaaaccttactagccaaagcagtagcaaaccaaacctcggccactttcttgagagt 791
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118604500 aggtaaaaccttactagccaaagcagtagcaaaccaaacctcggccactttcttgagagt 118604559

                                                                             
Query: 792       cgtcggctctgagcttattcagaagtacctcggtgacgggcccaaactcgttcgggaact 851
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118604560 cgtcggctctgagcttattcagaagtacctcggtgacgggcccaaactcgttcgggaact 118604619

                                                                             
Query: 852       gttccgagttgctgaagaacatgcaccgtccatcgtgtttattgatgaaatcgatgctat 911
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118604620 gttccgagttgctgaagaacatgcaccgtccatcgtgtttattgatgaaatcgatgctat 118604679

                                
Query: 912       tgggacgaaaaggta 926
                 |||||||||||||||
Sbjct: 118604680 tgggacgaaaaggta 118604694



 Score =  377 bits (190), Expect = e-101
 Identities = 190/190 (100%)
 Strand = Plus / Plus

                                                                             
Query: 320       aggaggagagatcgaaggtggatgatctgagggggaccccaatgtcagtgggaaccttgg 379
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118601104 aggaggagagatcgaaggtggatgatctgagggggaccccaatgtcagtgggaaccttgg 118601163

                                                                             
Query: 380       aggagatcattgatgacaatcatgccatcgtgtccacgtctgtgggctcggaacactacg 439
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118601164 aggagatcattgatgacaatcatgccatcgtgtccacgtctgtgggctcggaacactacg 118601223

                                                                             
Query: 440       tcagcatcctttcatttgtagacaaggatctgctggaaccgggctgctctgtcctgctca 499
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118601224 tcagcatcctttcatttgtagacaaggatctgctggaaccgggctgctctgtcctgctca 118601283

                           
Query: 500       accataaggt 509
                 ||||||||||
Sbjct: 118601284 accataaggt 118601293



 Score =  289 bits (146), Expect = 2e-75
 Identities = 152/154 (98%)
 Strand = Plus / Plus

                                                                             
Query: 1078      cgcatcgacaggaagatcgagtttcccctgcccgacgagaagacgaataagcgcatcttt 1137
                 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118605805 cgcatcgacaggaagatcgagtttcccctgcccgacgagaagacgaagaagcgcatcttt 118605864

                                                                             
Query: 1138      catatccacacgagcaggatgacactggccgacgatgtcaccctggacgacttgatcatg 1197
                 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118605865 cagatccacacgagcaggatgacactggccgacgatgtcaccctggacgacttgatcatg 118605924

                                                   
Query: 1198      gccaaagatgacctctccggtgccgacatcaagg 1231
                 ||||||||||||||||||||||||||||||||||
Sbjct: 118605925 gccaaagatgacctctccggtgccgacatcaagg 118605958



 Score =  268 bits (135), Expect = 8e-69
 Identities = 150/155 (96%)
 Strand = Plus / Plus

                                                                             
Query: 920       aaaggtacgactcaaattctgggggtgagagagaaattcggcgaacaatgttggaactgc 979
                 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 118605042 aaaggtacgactcaaattctgggggtgagagagaaattcagcgaacaatgttggaactgc 118605101

                                                                             
Query: 980       tgaaccagttggatggatttgattcagggggagacgtgaaagtcatcatggccacgaacc 1039
                 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 118605102 tgaaccagttggatggatttgattcaaggggagacgtgaaagtcatcatggccacaaacc 118605161

                                                    
Query: 1040      gaatacagactttggacccagcacttatcatacca 1074
                 ||||| |||||||||||||||||||||||| ||||
Sbjct: 118605162 gaatagagactttggacccagcacttatcagacca 118605196



 Score =  262 bits (132), Expect = 5e-67
 Identities = 132/132 (100%)
 Strand = Plus / Plus

                                                                             
Query: 506       aggtgcatgccgtgataggggtgctcatggatgacacagatcccttggtcacagtgatga 565
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118601485 aggtgcatgccgtgataggggtgctcatggatgacacagatcccttggtcacagtgatga 118601544

                                                                             
Query: 566       aggtggagaaggccccccaggagacctatgctgatattggggggctggacaaccagatcc 625
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118601545 aggtggagaaggccccccaggagacctatgctgatattggggggctggacaaccagatcc 118601604

                             
Query: 626       aggagatcaagg 637
                 ||||||||||||
Sbjct: 118601605 aggagatcaagg 118601616



 Score =  252 bits (127), Expect = 5e-64
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                             
Query: 196       gtgacacctcacactcagtgccggttaaaattactgaagttagagagaattaaagactat 255
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118600564 gtgacacctcacactcagtgccggttaaaattactgaagttagagagaattaaagactat 118600623

                                                                             
Query: 256       cttctcatggaagaagaattcattagaaatcaagaacaaatgaagcctttagaagaaaag 315
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118600624 cttctcatggaagaagaattcattagaaatcaagaacaaatgaagcctttagaagaaaag 118600683

                        
Query: 316       caagagg 322
                 |||||||
Sbjct: 118600684 caagagg 118600690



 Score =  202 bits (102), Expect = 4e-49
 Identities = 102/102 (100%)
 Strand = Plus / Plus

                                                                             
Query: 635       aggagtctgtggagcttcctctcactcatcctgagtattatgaagagatgggtataaagc 694
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118602422 aggagtctgtggagcttcctctcactcatcctgagtattatgaagagatgggtataaagc 118602481

                                                           
Query: 695       ccccgaagggggtcattctctacggcccacccggcacaggta 736
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118602482 ccccgaagggggtcattctctacggcccacccggcacaggta 118602523



 Score =  200 bits (101), Expect = 1e-48
 Identities = 101/101 (100%)
 Strand = Plus / Plus

                                                                             
Query: 96        caaggataagaaaaagaaatacgaaccccctgtaccaactagagtggggaagaagaagaa 155
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118598887 caaggataagaaaaagaaatacgaaccccctgtaccaactagagtggggaagaagaagaa 118598946

                                                          
Query: 156       gaaaacaaagggaccagatgctgccagcaaactgcccctgg 196
                 |||||||||||||||||||||||||||||||||||||||||
Sbjct: 118598947 gaaaacaaagggaccagatgctgccagcaaactgcccctgg 118598987



 Score =  190 bits (96), Expect = 1e-45
 Identities = 165/184 (89%), Gaps = 3/184 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1229      aggcaatctgtacagaagctggtctgatggccttgagagaacgtatgatgatagtaac-a 1287
                 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct: 118607448 aggcaatctgtacagaagctggtctgatggccttgagagaacgtaggatgaaagtaacaa 118607507

                                                                             
Query: 1288      atgaatacttctcacaatctaaagaaaatgttctttatcaaaaac-acagggcacccctg 1346
                 ||||| |||||  | ||||||||||||||||||||||| |||||| | | ||||||||||
Sbjct: 118607508 atgaagacttcaaaaaatctaaagaaaatgttctttataaaaaacaagaaggcacccctg 118607567

                                                                             
Query: 1347      aggggctctatctgtagcggaacacagctgcattcccag-aagggtgggagcgtcctgtg 1405
                 ||||||||||||||||| ||| ||||||||| ||||  | || ||||||||||||||| |
Sbjct: 118607568 aggggctctatctgtagtggaccacagctgccttccaggaaatggtgggagcgtcctggg 118607627

                     
Query: 1406      cccc 1409
                 ||||
Sbjct: 118607628 cccc 118607631



 Score =  111 bits (56), Expect = 1e-21
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                         
Query: 45        gggtcaaagtcagagtggtggtcatggccctggaggtggcaagaaggatgacaagg 100
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118598247 gggtcaaagtcagagtggtggtcatggccctggaggtggcaagaaggatgacaagg 118598302



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                              
Query: 2         agtgcacttccggcagcagcggctcgagcggccaaagcaagatgg 46
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118594317 agtgcacttccggcagcagcggctcgagcggccaaagcaagatgg 118594361


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  343 bits (173), Expect = 2e-91
 Identities = 298/337 (88%), Gaps = 2/337 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1048     actttggacccagcacttatcataccatggcgcatcgacaggaagatcgagtttcccctg 1107
                |||||||||| ||| ||||||| || | | | ||| ||||||||||| ||||||||||||
Sbjct: 87844267 actttggacctagcgcttatcagacaaggcctcattgacaggaagatggagtttcccctg 87844208

                                                                            
Query: 1108     cccgacgagaagacgaataagcgcatctttcatatccacacgagcaggatgacactggcc 1167
                ||||| ||||||| ||| || ||||||||||| || |||||||||||||||||||||| |
Sbjct: 87844207 cccgaggagaagatgaagaaccgcatctttcagatacacacgagcaggatgacactggac 87844148

                                                                            
Query: 1168     gacgatgtcaccctggacgacttgatcatggccaaagatgacctctccggtgccgacatc 1227
                ||||| ||||||||||| |||||||| ||| | |||||||||||||| ||||||||||||
Sbjct: 87844147 gacgacgtcaccctggatgacttgattatgtctaaagatgacctctctggtgccgacatc 87844088

                                                                            
Query: 1228     aaggcaatctgtacagaagctggtctgatggccttgagagaacgtatgatgatagtaaca 1287
                |||||||||||||||||||| ||||||||||||||||||||||| | ||||| |||||||
Sbjct: 87844087 aaggcaatctgtacagaagccggtctgatggccttgagagaacggaggatgaaagtaaca 87844028

                                                                            
Query: 1288     -atgaatacttctcacaatctaaagaaaatgttctttatcaaaaac-acagggcacccct 1345
                 ||||| ||||   | ||||||||||||||||||||||| |||||| | | |||||||||
Sbjct: 87844027 gatgaagactttaaaaaatctaaagaaaatgttctttataaaaaacaagaaggcacccct 87843968

                                                     
Query: 1346     gaggggctctatctgtagcggaacacagctgcattcc 1382
                || ||||||||||||||| ||||||||||||| ||||
Sbjct: 87843967 gaagggctctatctgtagtggaacacagctgccttcc 87843931


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,538,115
Number of extensions: 640
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 12
Length of query: 1409
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1388
Effective length of database: 2,808,413,156
Effective search space: 3898077460528
Effective search space used: 3898077460528
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)