Animal-Genome cDNA 20110601C-002654


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002685923.1| PREDICTED: interferon, gamma-inducible prote...   202   4e-52
Alignment   gi|XP_869021.2| PREDICTED: interferon, gamma-inducible protein ...   202   4e-52

>ref|XP_002685923.1| PREDICTED: interferon, gamma-inducible protein 16 [Bos taurus].
          Length = 521

 Score =  202 bits (513), Expect = 4e-52
 Identities = 114/208 (54%), Positives = 139/208 (66%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MGN++K+IVLLKGFQH++D  F MIKSLLAHDL+LTRKMQ+EYDR+KIADLME +FRG  
Sbjct: 1   MGNDYKKIVLLKGFQHINDKCFNMIKSLLAHDLKLTRKMQDEYDRVKIADLMELKFRGPD 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
           CVDKLIELVK ID+IK L K L+KEKLKV+++  AK    A  + QN SS  +STS  NE
Sbjct: 61  CVDKLIELVKEIDEIKDLAKVLRKEKLKVIKKNKAKGATPA--QNQNTSSLGQSTSTANE 118

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
           A GSE                   RRKLT+E+SQLPG+      S  S +ST+ L QT Q
Sbjct: 119 ALGSESVKDTPVKKKKTTKTNESKRRKLTEEQSQLPGS------SVMSIESTKGLLQTPQ 172

Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
                PS  S T++K DT T+  D K+K
Sbjct: 173 MPPSKPSSSSSTKKKSDTATKPKDVKRK 200


>ref|XP_869021.2| PREDICTED: interferon, gamma-inducible protein 16 isoform 2 [Bos
           taurus].
          Length = 521

 Score =  202 bits (513), Expect = 4e-52
 Identities = 114/208 (54%), Positives = 139/208 (66%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MGN++K+IVLLKGFQH++D  F MIKSLLAHDL+LTRKMQ+EYDR+KIADLME +FRG  
Sbjct: 1   MGNDYKKIVLLKGFQHINDKCFNMIKSLLAHDLKLTRKMQDEYDRVKIADLMELKFRGPD 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
           CVDKLIELVK ID+IK L K L+KEKLKV+++  AK    A  + QN SS  +STS  NE
Sbjct: 61  CVDKLIELVKEIDEIKDLAKVLRKEKLKVIKKNKAKGATPA--QNQNTSSLGQSTSTANE 118

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
           A GSE                   RRKLT+E+SQLPG+      S  S +ST+ L QT Q
Sbjct: 119 ALGSESVKDTPVKKKKTTKTNESKRRKLTEEQSQLPGS------SVMSIESTKGLLQTPQ 172

Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
                PS  S T++K DT T+  D K+K
Sbjct: 173 MPPSKPSSSSSTKKKSDTATKPKDVKRK 200


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,518,538
Number of extensions: 574691
Number of successful extensions: 1576
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1569
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 193
Effective length of database: 14,339,486
Effective search space: 2767520798
Effective search space used: 2767520798
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545739.2| PREDICTED: similar to myeloid cell nuclear diff...   108   5e-24

>ref|XP_545739.2| PREDICTED: similar to myeloid cell nuclear differentiation antigen
           [Canis familiaris].
          Length = 441

 Score =  108 bits (271), Expect = 5e-24
 Identities = 51/104 (49%), Positives = 75/104 (72%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M  E+K+I+LLKG + ++DY F ++KS+LA DL LT  MQEEY+++KIADLME++F G A
Sbjct: 1   MEGEYKKIILLKGLEPINDYQFSIVKSVLARDLGLTANMQEEYNKVKIADLMEKKFPGVA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKR 570
           CV+KLI+L K +  +  +VK L+ EK+K  ++  A E    +KR
Sbjct: 61  CVNKLIDLFKEMPSLTDIVKQLRNEKVKAAKKTKATEETPRRKR 104


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,678,126
Number of extensions: 583515
Number of successful extensions: 1699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1698
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 192
Effective length of database: 15,474,232
Effective search space: 2971052544
Effective search space used: 2971052544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002423.1| myeloid cell nuclear differentiation antigen [H...   144   1e-34
Alignment   gi|NP_005522.2| gamma-interferon-inducible protein 16 isoform 2...   120   2e-27
Alignment   gi|NP_001193496.1| gamma-interferon-inducible protein 16 isofor...   116   2e-26
Alignment   gi|NP_689714.2| pyrin and HIN domain-containing protein 1 isofo...   114   2e-25
Alignment   gi|NP_945147.1| pyrin and HIN domain-containing protein 1 isofo...   114   2e-25
Alignment   gi|NP_945148.1| pyrin and HIN domain-containing protein 1 isofo...   112   4e-25
Alignment   gi|NP_945146.1| pyrin and HIN domain-containing protein 1 isofo...   112   4e-25

>ref|NP_002423.1| myeloid cell nuclear differentiation antigen [Homo sapiens].
          Length = 407

 Score =  144 bits (363), Expect = 1e-34
 Identities = 88/212 (41%), Positives = 120/212 (56%), Gaps = 5/212 (2%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M NE+K+I+LLKGF+ MDDYHF  IKSLLA+DL LT KMQEEY+RIKI DLME++F+G A
Sbjct: 1   MVNEYKKILLLKGFELMDDYHFTSIKSLLAYDLGLTTKMQEEYNRIKITDLMEKKFQGVA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNE-----SSTDEST 603
           C+DKLIEL K +  +K+LV  L+KEK KV +++  +E A  KK  Q E      +     
Sbjct: 61  CLDKLIELAKDMPSLKNLVNNLRKEKSKVAKKIKTQEKAPVKKINQEEVGLAAPAPTARN 120

Query: 604 SATNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESL 783
             T+EA G                     R K++QE+S+ PG       S  ST +    
Sbjct: 121 KLTSEARG--RIPVAQKRKTPNKEKTEAKRNKVSQEQSKPPG------PSGASTSAAVDH 172

Query: 784 FQTLQTTAPTPSRISYTEEKKDTTTEANDFKK 879
               QT++ TPS  S+T  ++       D ++
Sbjct: 173 PPLPQTSSSTPSNTSFTPNQETQAQRQVDARR 204


>ref|NP_005522.2| gamma-interferon-inducible protein 16 isoform 2 [Homo sapiens].
          Length = 729

 Score =  120 bits (300), Expect = 2e-27
 Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 2/198 (1%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MG ++K IVLLKG + ++DYHF+M+KSLL++DL+L  KM+EEYD+I+IADLMEE+FRG A
Sbjct: 1   MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD--ESTSAT 612
            + KLI++ + I  ++ L + L+KEKLKV      K  A ++KRK+   +T    STS+T
Sbjct: 61  GLGKLIKIFEDIPTLEDLAETLKKEKLKV------KGPALSRKRKKEVDATSPAPSTSST 114

Query: 613 NEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQT 792
            +  G+E                     K+++E++Q P  +   + +A     +      
Sbjct: 115 VKTEGAEATPGAQKRKKSTKEKAGPKGSKVSEEQTQPPSPAGAGMSTAMGRSPSP----- 169

Query: 793 LQTTAPTPSRISYTEEKK 846
            +T+   P   S TE  K
Sbjct: 170 -KTSLSAPPNSSSTENPK 186


>ref|NP_001193496.1| gamma-interferon-inducible protein 16 isoform 1 [Homo sapiens].
          Length = 729

 Score =  116 bits (291), Expect = 2e-26
 Identities = 63/127 (49%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MG ++K IVLLKG + ++DYHF+M+KSLL++DL+L  KM+EEYD+I+IADLMEE+FRG A
Sbjct: 1   MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD--ESTSAT 612
            + KLI++ + I  ++ L + L+KEKLKV      K  A ++KRK+   +T    STS+T
Sbjct: 61  GLGKLIKIFEDIPTLEDLAETLKKEKLKV------KGPALSRKRKKEVDATSPAPSTSST 114

Query: 613 NEASGSE 633
            +  G+E
Sbjct: 115 VKTEGAE 121


>ref|NP_689714.2| pyrin and HIN domain-containing protein 1 isoform alpha 1 [Homo
           sapiens].
          Length = 492

 Score =  114 bits (284), Expect = 2e-25
 Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N +K+IVLLKG + ++DYHF+++KSLL++DL+L  KM+EEYD+I+IADLMEE+F G A
Sbjct: 1   MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNA---KETASAKKRKQNE--SSTDEST 603
            + KLIE  K I  +  L + L++EKLKV  ++ +   K    +KK KQ E   +T   T
Sbjct: 61  GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120

Query: 604 SATN-EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTES 780
            +    A G+E                   R K+++E+      +R    +  ST +   
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMG 174

Query: 781 LFQTLQTTAPTPSRISYTEEKK 846
                QT++  P   S TE  K
Sbjct: 175 RSPPPQTSSSAPPNTSSTESLK 196


>ref|NP_945147.1| pyrin and HIN domain-containing protein 1 isoform beta 1 [Homo
           sapiens].
          Length = 461

 Score =  114 bits (284), Expect = 2e-25
 Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N +K+IVLLKG + ++DYHF+++KSLL++DL+L  KM+EEYD+I+IADLMEE+F G A
Sbjct: 1   MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNA---KETASAKKRKQNE--SSTDEST 603
            + KLIE  K I  +  L + L++EKLKV  ++ +   K    +KK KQ E   +T   T
Sbjct: 61  GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120

Query: 604 SATN-EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTES 780
            +    A G+E                   R K+++E+      +R    +  ST +   
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMG 174

Query: 781 LFQTLQTTAPTPSRISYTEEKK 846
                QT++  P   S TE  K
Sbjct: 175 RSPPPQTSSSAPPNTSSTESLK 196


>ref|NP_945148.1| pyrin and HIN domain-containing protein 1 isoform beta 2 [Homo
           sapiens].
          Length = 452

 Score =  112 bits (280), Expect = 4e-25
 Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N +K+IVLLKG + ++DYHF+++KSLL++DL+L  KM+EEYD+I+IADLMEE+F G A
Sbjct: 1   MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATN- 615
            + KLIE  K I  +  L + L++EKLKV   + +K+T    K+K+   +T   T +   
Sbjct: 61  GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKT----KQKEVYPATPACTPSNRL 116

Query: 616 EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
            A G+E                   R K+++E+      +R    +  ST +        
Sbjct: 117 TAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMGRSPPP 170

Query: 796 QTTAPTPSRISYTEEKK 846
           QT++  P   S TE  K
Sbjct: 171 QTSSSAPPNTSSTESLK 187


>ref|NP_945146.1| pyrin and HIN domain-containing protein 1 isoform alpha 2 [Homo
           sapiens].
          Length = 483

 Score =  112 bits (280), Expect = 4e-25
 Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N +K+IVLLKG + ++DYHF+++KSLL++DL+L  KM+EEYD+I+IADLMEE+F G A
Sbjct: 1   MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATN- 615
            + KLIE  K I  +  L + L++EKLKV   + +K+T    K+K+   +T   T +   
Sbjct: 61  GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKT----KQKEVYPATPACTPSNRL 116

Query: 616 EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
            A G+E                   R K+++E+      +R    +  ST +        
Sbjct: 117 TAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMGRSPPP 170

Query: 796 QTTAPTPSRISYTEEKK 846
           QT++  P   S TE  K
Sbjct: 171 QTSSSAPPNTSSTESLK 187


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,177,145
Number of extensions: 574564
Number of successful extensions: 1836
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1829
Number of HSP's successfully gapped: 7
Length of query: 294
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 192
Effective length of database: 14,934,836
Effective search space: 2867488512
Effective search space used: 2867488512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001038946.1| interferon-activable protein 203 isoform 1 [...   126   3e-29
Alignment   gi|NP_032354.2| interferon-activable protein 203 isoform 2 [Mus...   126   3e-29
Alignment   gi|XP_001480769.1| PREDICTED: interferon-activable protein 203-...   126   3e-29
Alignment   gi|XP_001480767.2| PREDICTED: interferon-activable protein 203-...   126   3e-29
Alignment   gi|XP_001473980.2| PREDICTED: interferon-activable protein 203-...   125   3e-29
Alignment   gi|NP_001164324.1| myeloid cell nuclear differentiation antigen...   124   1e-28
Alignment   gi|XP_003084512.1| PREDICTED: interferon-activable protein 203-...   120   1e-27
Alignment   gi|NP_778191.1| pyrin and HIN domain-containing protein 1 [Mus ...   111   6e-25
Alignment   gi|NP_001019892.2| pyrin and HIN domain-containing protein 1-li...   111   8e-25
Alignment   gi|XP_136331.6| PREDICTED: gamma-interferon-inducible protein 1...   101   9e-22

>ref|NP_001038946.1| interferon-activable protein 203 isoform 1 [Mus musculus].
          Length = 457

 Score =  126 bits (316), Expect = 3e-29
 Identities = 74/187 (39%), Positives = 110/187 (58%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K IVLLKG ++M+DY F+ +KSLL  +L+LT+KMQE+YDRI++AD +E++F   A +D
Sbjct: 4   EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLD 63

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV ++   K   + KK+ Q+E S+ ES     E++ 
Sbjct: 64  KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNK 123

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQE++QLP T      S T+ +  E   Q    + 
Sbjct: 124 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 175

Query: 808 PTPSRIS 828
           PTPS  S
Sbjct: 176 PTPSSSS 182


>ref|NP_032354.2| interferon-activable protein 203 isoform 2 [Mus musculus].
          Length = 409

 Score =  126 bits (316), Expect = 3e-29
 Identities = 74/187 (39%), Positives = 110/187 (58%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K IVLLKG ++M+DY F+ +KSLL  +L+LT+KMQE+YDRI++AD +E++F   A +D
Sbjct: 4   EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLD 63

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV ++   K   + KK+ Q+E S+ ES     E++ 
Sbjct: 64  KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNK 123

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQE++QLP T      S T+ +  E   Q    + 
Sbjct: 124 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 175

Query: 808 PTPSRIS 828
           PTPS  S
Sbjct: 176 PTPSSSS 182


>ref|XP_001480769.1| PREDICTED: interferon-activable protein 203-like isoform 2 [Mus
           musculus].
          Length = 408

 Score =  126 bits (316), Expect = 3e-29
 Identities = 75/187 (40%), Positives = 108/187 (57%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K IVLLKG ++M+DY F+ +KSLL  +L+LT+KMQE+YDRI++AD ME++F   A +D
Sbjct: 3   EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV  +   K   + KK+ Q+E S+ ES     E+  
Sbjct: 63  KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKTAGKKKGQDELSSSESLFINKESYK 122

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQE++QLP T      S T+ +  E   Q    + 
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174

Query: 808 PTPSRIS 828
           PTPS  S
Sbjct: 175 PTPSSSS 181


>ref|XP_001480767.2| PREDICTED: interferon-activable protein 203-like isoform 1 [Mus
           musculus].
          Length = 456

 Score =  126 bits (316), Expect = 3e-29
 Identities = 75/187 (40%), Positives = 108/187 (57%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K IVLLKG ++M+DY F+ +KSLL  +L+LT+KMQE+YDRI++AD ME++F   A +D
Sbjct: 3   EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV  +   K   + KK+ Q+E S+ ES     E+  
Sbjct: 63  KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKTAGKKKGQDELSSSESLFINKESYK 122

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQE++QLP T      S T+ +  E   Q    + 
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174

Query: 808 PTPSRIS 828
           PTPS  S
Sbjct: 175 PTPSSSS 181


>ref|XP_001473980.2| PREDICTED: interferon-activable protein 203-like [Mus musculus].
          Length = 408

 Score =  125 bits (315), Expect = 3e-29
 Identities = 75/187 (40%), Positives = 108/187 (57%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K IVLLKG ++M+DY F+ +KSLL  +L+LT+KMQE+YDRI++AD ME++F   A +D
Sbjct: 3   EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV  +   K   + KK+ Q+E S+ ES     E+  
Sbjct: 63  KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKMAGKKKGQDELSSSESLFINKESYK 122

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQE++QLP T      S T+ +  E   Q    + 
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174

Query: 808 PTPSRIS 828
           PTPS  S
Sbjct: 175 PTPSSSS 181


>ref|NP_001164324.1| myeloid cell nuclear differentiation antigen-like protein [Mus
           musculus].
          Length = 538

 Score =  124 bits (310), Expect = 1e-28
 Identities = 75/205 (36%), Positives = 112/205 (54%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K+IVLLKG + M+DY F+ +KSLL  +L+LT+K+QE+YDRI++AD ME++F   A +D
Sbjct: 3   EYKKIVLLKGLESMEDYQFRTVKSLLRKELKLTKKLQEDYDRIQLADWMEDKFPKYAGLD 62

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ EK KV ++   K   + KK+ Q+E S+ ES     E+  
Sbjct: 63  KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKQGKCKTAVKKKGQDELSSSESLFINKESYK 122

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    + KLTQ++  LP T      S T  ++ E   Q      
Sbjct: 123 S--VPSSKKKGKAIAKTEGEKKNKLTQDQDHLPET------SGTDIKTEEDCLQNSPKPP 174

Query: 808 PTPSRISYTEEKKDTTTEANDFKKK 882
           PT    S  ++K+   T+    KKK
Sbjct: 175 PTSPSSSSNKKKRKEITKTEGGKKK 199


>ref|XP_003084512.1| PREDICTED: interferon-activable protein 203-like [Mus musculus].
          Length = 407

 Score =  120 bits (301), Expect = 1e-27
 Identities = 70/183 (38%), Positives = 107/183 (58%)
 Frame = +1

Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
           E+K+IVLL+G ++M DY F+ +KSLL  +L+LT+K+QE+YDRI++AD ME++F   A +D
Sbjct: 3   EYKKIVLLEGLENMGDYQFRTVKSLLRKELKLTKKLQEDYDRIQLADWMEDKFPKEAGLD 62

Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
           KLI++ + I D+K L K L+ +K KV ++   K   + KKR+Q+E S+ ES     E+  
Sbjct: 63  KLIKVCEHIKDLKDLAKKLKTKKAKVQKKKKGKCRTAIKKRRQDELSSSESLFINKESYK 122

Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
           S                    ++KLTQ ++QLP T      S T+ +  E   Q    + 
Sbjct: 123 S---VLSSKKKRKQITKTEGGKKKLTQGQAQLPET------SGTNIKKDEDCLQNPHKSP 173

Query: 808 PTP 816
           PTP
Sbjct: 174 PTP 176


>ref|NP_778191.1| pyrin and HIN domain-containing protein 1 [Mus musculus].
          Length = 420

 Score =  111 bits (278), Expect = 6e-25
 Identities = 72/190 (37%), Positives = 106/190 (55%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M NE+KRIVLL G   ++D+ F+M+KSLL+ +L+L R MQ++YDR+KIADLME++F   A
Sbjct: 1   MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNR-MQDQYDRVKIADLMEDKFPKDA 59

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
            VD+LI+L K I  +  +   L+ EK K  R    K   +AK+++Q E ST +  S TNE
Sbjct: 60  GVDQLIKLYKQIPGLGDIANKLKNEKAKAKRTRTGKRKTAAKRQRQEEPSTSQPMSTTNE 119

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
            +  E                   RR    + S    +S       TS++S+E+L Q++ 
Sbjct: 120 DAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASS----SGQTSSRSSETL-QSII 174

Query: 799 TTAPTPSRIS 828
            +  TP R S
Sbjct: 175 QSPKTPKRPS 184


>ref|NP_001019892.2| pyrin and HIN domain-containing protein 1-like [Mus musculus].
          Length = 219

 Score =  111 bits (277), Expect = 8e-25
 Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M NE+KRIVLL G   ++D+ F+M+KSLL+ +L+L  KMQ+EYDR+KIADLME++F   A
Sbjct: 1   MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLN-KMQDEYDRVKIADLMEDKFPKDA 59

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
            V +LI+L K I  +  +   L+ EK K  R+   K   +AK+++Q E ST +  S TNE
Sbjct: 60  GVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNE 119

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRR-KLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
            +  E                   RR +  Q    +  +S Q   S+ S+++ +S+ Q+ 
Sbjct: 120 DAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQ--TSSRSSETLQSIIQSP 177

Query: 796 QTTAPTPSRI 825
           +T   + SRI
Sbjct: 178 ETPTRSSSRI 187


>ref|XP_136331.6| PREDICTED: gamma-interferon-inducible protein 16-like [Mus
           musculus].
          Length = 890

 Score =  101 bits (251), Expect = 9e-22
 Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N +K+IVLL G ++M+DY+F+ +KSLL HDL+LT+ MQ++YDRIKIADLMEE+F   A
Sbjct: 1   MVNYYKQIVLLSGLEYMNDYNFRALKSLLNHDLKLTKNMQDDYDRIKIADLMEEKFPEDA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDE------- 597
            + KLIE+ + I ++   V  L+K+K K  R   +K+T             +E       
Sbjct: 61  GLSKLIEVCEDIPELADHVDILRKKKEKGKREAESKDTIPESPDTMTTQFLEEKPKFPLL 120

Query: 598 STSATNEASG 627
           ST++T++A G
Sbjct: 121 STTSTSQAEG 130


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,216,064
Number of extensions: 490628
Number of successful extensions: 1581
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 17
Length of query: 294
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 193
Effective length of database: 12,583,923
Effective search space: 2428697139
Effective search space used: 2428697139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001929247.1| PREDICTED: interferon-activable protein 203 ...   351   3e-97
Alignment   gi|XP_001929252.1| PREDICTED: interferon-activable protein 203 ...   351   3e-97
Alignment   gi|XP_003125734.1| PREDICTED: myeloid cell nuclear differentiat...   134   9e-32
Alignment   gi|XP_003355162.1| PREDICTED: myeloid cell nuclear differentiat...   134   9e-32

>ref|XP_001929247.1| PREDICTED: interferon-activable protein 203 isoform 1 [Sus scrofa].
          Length = 522

 Score =  351 bits (900), Expect = 3e-97
 Identities = 185/208 (88%), Positives = 187/208 (89%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA
Sbjct: 1   MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
           CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE
Sbjct: 61  CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 120

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
           ASGSE                   RRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ
Sbjct: 121 ASGSESTKNTPMKKNKTTETNESKRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 180

Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
           T APTPSRIS T+EKKDTTT+ANDFKKK
Sbjct: 181 TPAPTPSRISSTKEKKDTTTKANDFKKK 208


>ref|XP_001929252.1| PREDICTED: interferon-activable protein 203 isoform 2 [Sus scrofa].
          Length = 547

 Score =  351 bits (900), Expect = 3e-97
 Identities = 185/208 (88%), Positives = 187/208 (89%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA
Sbjct: 1   MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
           CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE
Sbjct: 61  CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 120

Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
           ASGSE                   RRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ
Sbjct: 121 ASGSESTKNTPMKKNKTTETNESKRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 180

Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
           T APTPSRIS T+EKKDTTT+ANDFKKK
Sbjct: 181 TPAPTPSRISSTKEKKDTTTKANDFKKK 208


>ref|XP_003125734.1| PREDICTED: myeloid cell nuclear differentiation antigen-like [Sus
           scrofa].
          Length = 410

 Score =  134 bits (336), Expect = 9e-32
 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 3/204 (1%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N++K+I+LLKG + +D+YHF MIKSLLAHDL LTR+MQ+ YDR+KIADLME +F G  
Sbjct: 1   MTNKYKKIILLKGLEKIDEYHFSMIKSLLAHDLELTREMQDNYDRVKIADLMELKFPGIT 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD---ESTSA 609
           CV+ L EL+  +   K  VK  +KEKLKV R + A+ + SAK+RKQ E+ +D    +T  
Sbjct: 61  CVNILEELLSDMIKYKDTVKEFRKEKLKVAREIGAEMSPSAKRRKQEETCSDMHGPTTHI 120

Query: 610 TNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQ 789
              + G++                   R+K++Q+++       Q +  + S  ST + F 
Sbjct: 121 NLPSEGAKESPVAQKRKTSTQGESGTKRKKVSQKQT-------QSVSPSGSNTSTTAGFP 173

Query: 790 TLQTTAPTPSRISYTEEKKDTTTE 861
            L  T+P+ S  ++  + + +  +
Sbjct: 174 PLPQTSPSASSSTHLPKNQKSQVQ 197


>ref|XP_003355162.1| PREDICTED: myeloid cell nuclear differentiation antigen-like [Sus
           scrofa].
          Length = 410

 Score =  134 bits (336), Expect = 9e-32
 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 3/204 (1%)
 Frame = +1

Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
           M N++K+I+LLKG + +D+YHF MIKSLLAHDL LTR+MQ+ YDR+KIADLME +F G  
Sbjct: 1   MTNKYKKIILLKGLEKIDEYHFSMIKSLLAHDLELTREMQDNYDRVKIADLMELKFPGIT 60

Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD---ESTSA 609
           CV+ L EL+  +   K  VK  +KEKLKV R + A+ + SAK+RKQ E+ +D    +T  
Sbjct: 61  CVNILEELLSDMIKYKDTVKEFRKEKLKVAREIGAEMSPSAKRRKQEETCSDMHGPTTHI 120

Query: 610 TNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQ 789
              + G++                   R+K++Q+++       Q +  + S  ST + F 
Sbjct: 121 NLPSEGAKESPVAQKRKTSTQGESGTKRKKVSQKQT-------QSVSPSGSNTSTTAGFP 173

Query: 790 TLQTTAPTPSRISYTEEKKDTTTE 861
            L  T+P+ S  ++  + + +  +
Sbjct: 174 PLPQTSPSASSSTHLPKNQKSQVQ 197


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,194,910
Number of extensions: 392459
Number of successful extensions: 1035
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 4
Length of query: 294
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,904,026
Effective search space: 1745189096
Effective search space used: 1745189096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002654
         (882 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         569   e-160

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  569 bits (287), Expect = e-160
 Identities = 287/287 (100%)
 Strand = Plus / Minus

                                                                            
Query: 237      aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 296
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391298 aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 99391239

                                                                            
Query: 297      attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 356
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391238 attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 99391179

                                                                            
Query: 357      aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgccgacttgatgga 416
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391178 aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgccgacttgatgga 99391119

                                                                            
Query: 417      agaaaggttccgaggggctgcctgtgttgacaaactaatagagttggtcaaaggaattga 476
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391118 agaaaggttccgaggggctgcctgtgttgacaaactaatagagttggtcaaaggaattga 99391059

                                                               
Query: 477      tgatattaaacaccttgttaaacctcttcaaaaggagaagttaaaag 523
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391058 tgatattaaacaccttgttaaacctcttcaaaaggagaagttaaaag 99391012



 Score =  331 bits (167), Expect = 4e-88
 Identities = 176/179 (98%)
 Strand = Plus / Minus

                                                                            
Query: 656      agaaaaataaaaccacagaaactaatgaatctaaaaggaggaagctaacccaggaggaaa 715
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389085 agaaaaataaaaccacagaaactaatgaatctaaaaggaggaagctaacccaggaggaaa 99389026

                                                                            
Query: 716      gtcagctcccaggaacttccaggcagctcctagagtcagcaaccagcacacagtccactg 775
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389025 gtcagctcccaggaacttccaggcagctcctagagtcagcaaccagcacacagtccactg 99388966

                                                                           
Query: 776      agagccttttccaaactcttcaaacgactgcaccaaccccatccagaatttcctacacc 834
                ||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 99388965 agagccttttccagactcttcaaacgcctgcaccaaccccatccagaatttcctccacc 99388907



 Score =  327 bits (165), Expect = 6e-87
 Identities = 165/165 (100%)
 Strand = Plus / Minus

                                                                            
Query: 75       cttttacttctgcccttctggaggttataaaattttgcattcagtctctgacagatttac 134
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99400019 cttttacttctgcccttctggaggttataaaattttgcattcagtctctgacagatttac 99399960

                                                                            
Query: 135      tgatttatcatcctacttaaacaaaataagcagtgatttctgcacttctaaagaaaacct 194
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99399959 tgatttatcatcctacttaaacaaaataagcagtgatttctgcacttctaaagaaaacct 99399900

                                                             
Query: 195      caagatctggacttgagaagaaagtggaagaaattgccactgagg 239
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99399899 caagatctggacttgagaagaaagtggaagaaattgccactgagg 99399855



 Score =  222 bits (112), Expect = 3e-55
 Identities = 128/136 (94%)
 Strand = Plus / Minus

                                                                            
Query: 522      agttttaaggagactcaatgcaaaagaaaccgcttcagcnnnnnnnngaaagcagaatga 581
                |||||||||||||||||||||||||||||||||||||||        |||||||||||||
Sbjct: 99389832 agttttaaggagactcaatgcaaaagaaaccgcttcagcaaaaaaaagaaagcagaatga 99389773

                                                                            
Query: 582      atccagtactgatgaatcgacatccgccacaaatgaagcttcgggatctgaatcaaccaa 641
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389772 atccagtactgatgaatcgacatccgccacaaatgaagcttcgggatctgaatcaaccaa 99389713

                                
Query: 642      gaatacacctatgaag 657
                ||||||||||||||||
Sbjct: 99389712 gaatacacctatgaag 99389697



 Score =  119 bits (60), Expect = 3e-24
 Identities = 141/168 (83%)
 Strand = Plus / Minus

                                                                            
Query: 237      aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 296
                ||||||||||||||||||||  |||  |||| ||| ||||| |||  |||||||||||||
Sbjct: 99425728 aggctcatccataacttgagacatgacgaataaatacaagaaaatcattctgctgaaagg 99425669

                                                                            
Query: 297      attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 356
                |||  || | || ||||| ||||||||||  |||||||||||| ||||||| ||||||||
Sbjct: 99425668 attagagaaaatcgatgaatatcattttagtatgattaagtctttactggctcatgattt 99425609

                                                                
Query: 357      aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgc 404
                |  |||||| ||| ||||||||||  | ||||||||| ||||||||||
Sbjct: 99425608 agaactgactagagaaatgcaagataactacgacagagttaagattgc 99425561


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,480,519
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 7
Length of query: 882
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 861
Effective length of database: 2,808,413,156
Effective search space: 2418043727316
Effective search space used: 2418043727316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)