Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685923.1| PREDICTED: interferon, gamma-inducible prote... 202 4e-52
Alignment gi|XP_869021.2| PREDICTED: interferon, gamma-inducible protein ... 202 4e-52
>ref|XP_002685923.1| PREDICTED: interferon, gamma-inducible protein 16 [Bos taurus].
Length = 521
Score = 202 bits (513), Expect = 4e-52
Identities = 114/208 (54%), Positives = 139/208 (66%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MGN++K+IVLLKGFQH++D F MIKSLLAHDL+LTRKMQ+EYDR+KIADLME +FRG
Sbjct: 1 MGNDYKKIVLLKGFQHINDKCFNMIKSLLAHDLKLTRKMQDEYDRVKIADLMELKFRGPD 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
CVDKLIELVK ID+IK L K L+KEKLKV+++ AK A + QN SS +STS NE
Sbjct: 61 CVDKLIELVKEIDEIKDLAKVLRKEKLKVIKKNKAKGATPA--QNQNTSSLGQSTSTANE 118
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
A GSE RRKLT+E+SQLPG+ S S +ST+ L QT Q
Sbjct: 119 ALGSESVKDTPVKKKKTTKTNESKRRKLTEEQSQLPGS------SVMSIESTKGLLQTPQ 172
Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
PS S T++K DT T+ D K+K
Sbjct: 173 MPPSKPSSSSSTKKKSDTATKPKDVKRK 200
>ref|XP_869021.2| PREDICTED: interferon, gamma-inducible protein 16 isoform 2 [Bos
taurus].
Length = 521
Score = 202 bits (513), Expect = 4e-52
Identities = 114/208 (54%), Positives = 139/208 (66%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MGN++K+IVLLKGFQH++D F MIKSLLAHDL+LTRKMQ+EYDR+KIADLME +FRG
Sbjct: 1 MGNDYKKIVLLKGFQHINDKCFNMIKSLLAHDLKLTRKMQDEYDRVKIADLMELKFRGPD 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
CVDKLIELVK ID+IK L K L+KEKLKV+++ AK A + QN SS +STS NE
Sbjct: 61 CVDKLIELVKEIDEIKDLAKVLRKEKLKVIKKNKAKGATPA--QNQNTSSLGQSTSTANE 118
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
A GSE RRKLT+E+SQLPG+ S S +ST+ L QT Q
Sbjct: 119 ALGSESVKDTPVKKKKTTKTNESKRRKLTEEQSQLPGS------SVMSIESTKGLLQTPQ 172
Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
PS S T++K DT T+ D K+K
Sbjct: 173 MPPSKPSSSSSTKKKSDTATKPKDVKRK 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,518,538
Number of extensions: 574691
Number of successful extensions: 1576
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1569
Number of HSP's successfully gapped: 2
Length of query: 294
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 193
Effective length of database: 14,339,486
Effective search space: 2767520798
Effective search space used: 2767520798
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545739.2| PREDICTED: similar to myeloid cell nuclear diff... 108 5e-24
>ref|XP_545739.2| PREDICTED: similar to myeloid cell nuclear differentiation antigen
[Canis familiaris].
Length = 441
Score = 108 bits (271), Expect = 5e-24
Identities = 51/104 (49%), Positives = 75/104 (72%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M E+K+I+LLKG + ++DY F ++KS+LA DL LT MQEEY+++KIADLME++F G A
Sbjct: 1 MEGEYKKIILLKGLEPINDYQFSIVKSVLARDLGLTANMQEEYNKVKIADLMEKKFPGVA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKR 570
CV+KLI+L K + + +VK L+ EK+K ++ A E +KR
Sbjct: 61 CVNKLIDLFKEMPSLTDIVKQLRNEKVKAAKKTKATEETPRRKR 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 27,678,126
Number of extensions: 583515
Number of successful extensions: 1699
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1698
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 192
Effective length of database: 15,474,232
Effective search space: 2971052544
Effective search space used: 2971052544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002423.1| myeloid cell nuclear differentiation antigen [H... 144 1e-34
Alignment gi|NP_005522.2| gamma-interferon-inducible protein 16 isoform 2... 120 2e-27
Alignment gi|NP_001193496.1| gamma-interferon-inducible protein 16 isofor... 116 2e-26
Alignment gi|NP_689714.2| pyrin and HIN domain-containing protein 1 isofo... 114 2e-25
Alignment gi|NP_945147.1| pyrin and HIN domain-containing protein 1 isofo... 114 2e-25
Alignment gi|NP_945148.1| pyrin and HIN domain-containing protein 1 isofo... 112 4e-25
Alignment gi|NP_945146.1| pyrin and HIN domain-containing protein 1 isofo... 112 4e-25
>ref|NP_002423.1| myeloid cell nuclear differentiation antigen [Homo sapiens].
Length = 407
Score = 144 bits (363), Expect = 1e-34
Identities = 88/212 (41%), Positives = 120/212 (56%), Gaps = 5/212 (2%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M NE+K+I+LLKGF+ MDDYHF IKSLLA+DL LT KMQEEY+RIKI DLME++F+G A
Sbjct: 1 MVNEYKKILLLKGFELMDDYHFTSIKSLLAYDLGLTTKMQEEYNRIKITDLMEKKFQGVA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNE-----SSTDEST 603
C+DKLIEL K + +K+LV L+KEK KV +++ +E A KK Q E +
Sbjct: 61 CLDKLIELAKDMPSLKNLVNNLRKEKSKVAKKIKTQEKAPVKKINQEEVGLAAPAPTARN 120
Query: 604 SATNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESL 783
T+EA G R K++QE+S+ PG S ST +
Sbjct: 121 KLTSEARG--RIPVAQKRKTPNKEKTEAKRNKVSQEQSKPPG------PSGASTSAAVDH 172
Query: 784 FQTLQTTAPTPSRISYTEEKKDTTTEANDFKK 879
QT++ TPS S+T ++ D ++
Sbjct: 173 PPLPQTSSSTPSNTSFTPNQETQAQRQVDARR 204
>ref|NP_005522.2| gamma-interferon-inducible protein 16 isoform 2 [Homo sapiens].
Length = 729
Score = 120 bits (300), Expect = 2e-27
Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 2/198 (1%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MG ++K IVLLKG + ++DYHF+M+KSLL++DL+L KM+EEYD+I+IADLMEE+FRG A
Sbjct: 1 MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD--ESTSAT 612
+ KLI++ + I ++ L + L+KEKLKV K A ++KRK+ +T STS+T
Sbjct: 61 GLGKLIKIFEDIPTLEDLAETLKKEKLKV------KGPALSRKRKKEVDATSPAPSTSST 114
Query: 613 NEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQT 792
+ G+E K+++E++Q P + + +A +
Sbjct: 115 VKTEGAEATPGAQKRKKSTKEKAGPKGSKVSEEQTQPPSPAGAGMSTAMGRSPSP----- 169
Query: 793 LQTTAPTPSRISYTEEKK 846
+T+ P S TE K
Sbjct: 170 -KTSLSAPPNSSSTENPK 186
>ref|NP_001193496.1| gamma-interferon-inducible protein 16 isoform 1 [Homo sapiens].
Length = 729
Score = 116 bits (291), Expect = 2e-26
Identities = 63/127 (49%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MG ++K IVLLKG + ++DYHF+M+KSLL++DL+L KM+EEYD+I+IADLMEE+FRG A
Sbjct: 1 MGKKYKNIVLLKGLEVINDYHFRMVKSLLSNDLKLNLKMREEYDKIQIADLMEEKFRGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD--ESTSAT 612
+ KLI++ + I ++ L + L+KEKLKV K A ++KRK+ +T STS+T
Sbjct: 61 GLGKLIKIFEDIPTLEDLAETLKKEKLKV------KGPALSRKRKKEVDATSPAPSTSST 114
Query: 613 NEASGSE 633
+ G+E
Sbjct: 115 VKTEGAE 121
>ref|NP_689714.2| pyrin and HIN domain-containing protein 1 isoform alpha 1 [Homo
sapiens].
Length = 492
Score = 114 bits (284), Expect = 2e-25
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N +K+IVLLKG + ++DYHF+++KSLL++DL+L KM+EEYD+I+IADLMEE+F G A
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNA---KETASAKKRKQNE--SSTDEST 603
+ KLIE K I + L + L++EKLKV ++ + K +KK KQ E +T T
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 604 SATN-EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTES 780
+ A G+E R K+++E+ +R + ST +
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMG 174
Query: 781 LFQTLQTTAPTPSRISYTEEKK 846
QT++ P S TE K
Sbjct: 175 RSPPPQTSSSAPPNTSSTESLK 196
>ref|NP_945147.1| pyrin and HIN domain-containing protein 1 isoform beta 1 [Homo
sapiens].
Length = 461
Score = 114 bits (284), Expect = 2e-25
Identities = 74/202 (36%), Positives = 110/202 (54%), Gaps = 6/202 (2%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N +K+IVLLKG + ++DYHF+++KSLL++DL+L KM+EEYD+I+IADLMEE+F G A
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNA---KETASAKKRKQNE--SSTDEST 603
+ KLIE K I + L + L++EKLKV ++ + K +KK KQ E +T T
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACT 120
Query: 604 SATN-EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTES 780
+ A G+E R K+++E+ +R + ST +
Sbjct: 121 PSNRLTAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMG 174
Query: 781 LFQTLQTTAPTPSRISYTEEKK 846
QT++ P S TE K
Sbjct: 175 RSPPPQTSSSAPPNTSSTESLK 196
>ref|NP_945148.1| pyrin and HIN domain-containing protein 1 isoform beta 2 [Homo
sapiens].
Length = 452
Score = 112 bits (280), Expect = 4e-25
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N +K+IVLLKG + ++DYHF+++KSLL++DL+L KM+EEYD+I+IADLMEE+F G A
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATN- 615
+ KLIE K I + L + L++EKLKV + +K+T K+K+ +T T +
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKT----KQKEVYPATPACTPSNRL 116
Query: 616 EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
A G+E R K+++E+ +R + ST +
Sbjct: 117 TAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMGRSPPP 170
Query: 796 QTTAPTPSRISYTEEKK 846
QT++ P S TE K
Sbjct: 171 QTSSSAPPNTSSTESLK 187
>ref|NP_945146.1| pyrin and HIN domain-containing protein 1 isoform alpha 2 [Homo
sapiens].
Length = 483
Score = 112 bits (280), Expect = 4e-25
Identities = 72/197 (36%), Positives = 109/197 (55%), Gaps = 1/197 (0%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N +K+IVLLKG + ++DYHF+++KSLL++DL+L KM+EEYD+I+IADLMEE+F G A
Sbjct: 1 MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATN- 615
+ KLIE K I + L + L++EKLKV + +K+T K+K+ +T T +
Sbjct: 61 GLGKLIEFFKEIPTLGDLAETLKREKLKVKGIIPSKKT----KQKEVYPATPACTPSNRL 116
Query: 616 EASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
A G+E R K+++E+ +R + ST +
Sbjct: 117 TAKGAEETLGPQKRKKPSEEETGTKRSKMSKEQ------TRPSCSAGASTSTAMGRSPPP 170
Query: 796 QTTAPTPSRISYTEEKK 846
QT++ P S TE K
Sbjct: 171 QTSSSAPPNTSSTESLK 187
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 27,177,145
Number of extensions: 574564
Number of successful extensions: 1836
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1829
Number of HSP's successfully gapped: 7
Length of query: 294
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 192
Effective length of database: 14,934,836
Effective search space: 2867488512
Effective search space used: 2867488512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001038946.1| interferon-activable protein 203 isoform 1 [... 126 3e-29
Alignment gi|NP_032354.2| interferon-activable protein 203 isoform 2 [Mus... 126 3e-29
Alignment gi|XP_001480769.1| PREDICTED: interferon-activable protein 203-... 126 3e-29
Alignment gi|XP_001480767.2| PREDICTED: interferon-activable protein 203-... 126 3e-29
Alignment gi|XP_001473980.2| PREDICTED: interferon-activable protein 203-... 125 3e-29
Alignment gi|NP_001164324.1| myeloid cell nuclear differentiation antigen... 124 1e-28
Alignment gi|XP_003084512.1| PREDICTED: interferon-activable protein 203-... 120 1e-27
Alignment gi|NP_778191.1| pyrin and HIN domain-containing protein 1 [Mus ... 111 6e-25
Alignment gi|NP_001019892.2| pyrin and HIN domain-containing protein 1-li... 111 8e-25
Alignment gi|XP_136331.6| PREDICTED: gamma-interferon-inducible protein 1... 101 9e-22
>ref|NP_001038946.1| interferon-activable protein 203 isoform 1 [Mus musculus].
Length = 457
Score = 126 bits (316), Expect = 3e-29
Identities = 74/187 (39%), Positives = 110/187 (58%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K IVLLKG ++M+DY F+ +KSLL +L+LT+KMQE+YDRI++AD +E++F A +D
Sbjct: 4 EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLD 63
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV ++ K + KK+ Q+E S+ ES E++
Sbjct: 64 KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNK 123
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQE++QLP T S T+ + E Q +
Sbjct: 124 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 175
Query: 808 PTPSRIS 828
PTPS S
Sbjct: 176 PTPSSSS 182
>ref|NP_032354.2| interferon-activable protein 203 isoform 2 [Mus musculus].
Length = 409
Score = 126 bits (316), Expect = 3e-29
Identities = 74/187 (39%), Positives = 110/187 (58%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K IVLLKG ++M+DY F+ +KSLL +L+LT+KMQE+YDRI++AD +E++F A +D
Sbjct: 4 EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLD 63
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV ++ K + KK+ Q+E S+ ES E++
Sbjct: 64 KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNK 123
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQE++QLP T S T+ + E Q +
Sbjct: 124 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 175
Query: 808 PTPSRIS 828
PTPS S
Sbjct: 176 PTPSSSS 182
>ref|XP_001480769.1| PREDICTED: interferon-activable protein 203-like isoform 2 [Mus
musculus].
Length = 408
Score = 126 bits (316), Expect = 3e-29
Identities = 75/187 (40%), Positives = 108/187 (57%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K IVLLKG ++M+DY F+ +KSLL +L+LT+KMQE+YDRI++AD ME++F A +D
Sbjct: 3 EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV + K + KK+ Q+E S+ ES E+
Sbjct: 63 KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKTAGKKKGQDELSSSESLFINKESYK 122
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQE++QLP T S T+ + E Q +
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174
Query: 808 PTPSRIS 828
PTPS S
Sbjct: 175 PTPSSSS 181
>ref|XP_001480767.2| PREDICTED: interferon-activable protein 203-like isoform 1 [Mus
musculus].
Length = 456
Score = 126 bits (316), Expect = 3e-29
Identities = 75/187 (40%), Positives = 108/187 (57%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K IVLLKG ++M+DY F+ +KSLL +L+LT+KMQE+YDRI++AD ME++F A +D
Sbjct: 3 EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV + K + KK+ Q+E S+ ES E+
Sbjct: 63 KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKTAGKKKGQDELSSSESLFINKESYK 122
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQE++QLP T S T+ + E Q +
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174
Query: 808 PTPSRIS 828
PTPS S
Sbjct: 175 PTPSSSS 181
>ref|XP_001473980.2| PREDICTED: interferon-activable protein 203-like [Mus musculus].
Length = 408
Score = 125 bits (315), Expect = 3e-29
Identities = 75/187 (40%), Positives = 108/187 (57%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K IVLLKG ++M+DY F+ +KSLL +L+LT+KMQE+YDRI++AD ME++F A +D
Sbjct: 3 EYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWMEDKFPKDAGLD 62
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV + K + KK+ Q+E S+ ES E+
Sbjct: 63 KLIKVCEHIKDLKDLAKKLKTEKAKVQEKKKGKCKMAGKKKGQDELSSSESLFINKESYK 122
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQE++QLP T S T+ + E Q +
Sbjct: 123 S--VPSSKKKRKQITKTEGGKKKKLTQEQAQLPET------SGTNIKKEEDCLQNPHKSP 174
Query: 808 PTPSRIS 828
PTPS S
Sbjct: 175 PTPSSSS 181
>ref|NP_001164324.1| myeloid cell nuclear differentiation antigen-like protein [Mus
musculus].
Length = 538
Score = 124 bits (310), Expect = 1e-28
Identities = 75/205 (36%), Positives = 112/205 (54%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K+IVLLKG + M+DY F+ +KSLL +L+LT+K+QE+YDRI++AD ME++F A +D
Sbjct: 3 EYKKIVLLKGLESMEDYQFRTVKSLLRKELKLTKKLQEDYDRIQLADWMEDKFPKYAGLD 62
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ EK KV ++ K + KK+ Q+E S+ ES E+
Sbjct: 63 KLIKVCEHIKDLKDLAKKLKTEKAKVQKKKQGKCKTAVKKKGQDELSSSESLFINKESYK 122
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S + KLTQ++ LP T S T ++ E Q
Sbjct: 123 S--VPSSKKKGKAIAKTEGEKKNKLTQDQDHLPET------SGTDIKTEEDCLQNSPKPP 174
Query: 808 PTPSRISYTEEKKDTTTEANDFKKK 882
PT S ++K+ T+ KKK
Sbjct: 175 PTSPSSSSNKKKRKEITKTEGGKKK 199
>ref|XP_003084512.1| PREDICTED: interferon-activable protein 203-like [Mus musculus].
Length = 407
Score = 120 bits (301), Expect = 1e-27
Identities = 70/183 (38%), Positives = 107/183 (58%)
Frame = +1
Query: 268 EFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAACVD 447
E+K+IVLL+G ++M DY F+ +KSLL +L+LT+K+QE+YDRI++AD ME++F A +D
Sbjct: 3 EYKKIVLLEGLENMGDYQFRTVKSLLRKELKLTKKLQEDYDRIQLADWMEDKFPKEAGLD 62
Query: 448 KLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNEASG 627
KLI++ + I D+K L K L+ +K KV ++ K + KKR+Q+E S+ ES E+
Sbjct: 63 KLIKVCEHIKDLKDLAKKLKTKKAKVQKKKKGKCRTAIKKRRQDELSSSESLFINKESYK 122
Query: 628 SEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQTTA 807
S ++KLTQ ++QLP T S T+ + E Q +
Sbjct: 123 S---VLSSKKKRKQITKTEGGKKKLTQGQAQLPET------SGTNIKKDEDCLQNPHKSP 173
Query: 808 PTP 816
PTP
Sbjct: 174 PTP 176
>ref|NP_778191.1| pyrin and HIN domain-containing protein 1 [Mus musculus].
Length = 420
Score = 111 bits (278), Expect = 6e-25
Identities = 72/190 (37%), Positives = 106/190 (55%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M NE+KRIVLL G ++D+ F+M+KSLL+ +L+L R MQ++YDR+KIADLME++F A
Sbjct: 1 MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNR-MQDQYDRVKIADLMEDKFPKDA 59
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
VD+LI+L K I + + L+ EK K R K +AK+++Q E ST + S TNE
Sbjct: 60 GVDQLIKLYKQIPGLGDIANKLKNEKAKAKRTRTGKRKTAAKRQRQEEPSTSQPMSTTNE 119
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
+ E RR + S +S TS++S+E+L Q++
Sbjct: 120 DAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASS----SGQTSSRSSETL-QSII 174
Query: 799 TTAPTPSRIS 828
+ TP R S
Sbjct: 175 QSPKTPKRPS 184
>ref|NP_001019892.2| pyrin and HIN domain-containing protein 1-like [Mus musculus].
Length = 219
Score = 111 bits (277), Expect = 8e-25
Identities = 71/190 (37%), Positives = 108/190 (56%), Gaps = 1/190 (0%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M NE+KRIVLL G ++D+ F+M+KSLL+ +L+L KMQ+EYDR+KIADLME++F A
Sbjct: 1 MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLN-KMQDEYDRVKIADLMEDKFPKDA 59
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
V +LI+L K I + + L+ EK K R+ K +AK+++Q E ST + S TNE
Sbjct: 60 GVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNE 119
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRR-KLTQEESQLPGTSRQLLESATSTQSTESLFQTL 795
+ E RR + Q + +S Q S+ S+++ +S+ Q+
Sbjct: 120 DAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQ--TSSRSSETLQSIIQSP 177
Query: 796 QTTAPTPSRI 825
+T + SRI
Sbjct: 178 ETPTRSSSRI 187
>ref|XP_136331.6| PREDICTED: gamma-interferon-inducible protein 16-like [Mus
musculus].
Length = 890
Score = 101 bits (251), Expect = 9e-22
Identities = 56/130 (43%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N +K+IVLL G ++M+DY+F+ +KSLL HDL+LT+ MQ++YDRIKIADLMEE+F A
Sbjct: 1 MVNYYKQIVLLSGLEYMNDYNFRALKSLLNHDLKLTKNMQDDYDRIKIADLMEEKFPEDA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDE------- 597
+ KLIE+ + I ++ V L+K+K K R +K+T +E
Sbjct: 61 GLSKLIEVCEDIPELADHVDILRKKKEKGKREAESKDTIPESPDTMTTQFLEEKPKFPLL 120
Query: 598 STSATNEASG 627
ST++T++A G
Sbjct: 121 STTSTSQAEG 130
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,216,064
Number of extensions: 490628
Number of successful extensions: 1581
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 17
Length of query: 294
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 193
Effective length of database: 12,583,923
Effective search space: 2428697139
Effective search space used: 2428697139
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929247.1| PREDICTED: interferon-activable protein 203 ... 351 3e-97
Alignment gi|XP_001929252.1| PREDICTED: interferon-activable protein 203 ... 351 3e-97
Alignment gi|XP_003125734.1| PREDICTED: myeloid cell nuclear differentiat... 134 9e-32
Alignment gi|XP_003355162.1| PREDICTED: myeloid cell nuclear differentiat... 134 9e-32
>ref|XP_001929247.1| PREDICTED: interferon-activable protein 203 isoform 1 [Sus scrofa].
Length = 522
Score = 351 bits (900), Expect = 3e-97
Identities = 185/208 (88%), Positives = 187/208 (89%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA
Sbjct: 1 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE
Sbjct: 61 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 120
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
ASGSE RRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ
Sbjct: 121 ASGSESTKNTPMKKNKTTETNESKRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 180
Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
T APTPSRIS T+EKKDTTT+ANDFKKK
Sbjct: 181 TPAPTPSRISSTKEKKDTTTKANDFKKK 208
>ref|XP_001929252.1| PREDICTED: interferon-activable protein 203 isoform 2 [Sus scrofa].
Length = 547
Score = 351 bits (900), Expect = 3e-97
Identities = 185/208 (88%), Positives = 187/208 (89%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA
Sbjct: 1 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 618
CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE
Sbjct: 61 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTDESTSATNE 120
Query: 619 ASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 798
ASGSE RRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ
Sbjct: 121 ASGSESTKNTPMKKNKTTETNESKRRKLTQEESQLPGTSRQLLESATSTQSTESLFQTLQ 180
Query: 799 TTAPTPSRISYTEEKKDTTTEANDFKKK 882
T APTPSRIS T+EKKDTTT+ANDFKKK
Sbjct: 181 TPAPTPSRISSTKEKKDTTTKANDFKKK 208
>ref|XP_003125734.1| PREDICTED: myeloid cell nuclear differentiation antigen-like [Sus
scrofa].
Length = 410
Score = 134 bits (336), Expect = 9e-32
Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 3/204 (1%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N++K+I+LLKG + +D+YHF MIKSLLAHDL LTR+MQ+ YDR+KIADLME +F G
Sbjct: 1 MTNKYKKIILLKGLEKIDEYHFSMIKSLLAHDLELTREMQDNYDRVKIADLMELKFPGIT 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD---ESTSA 609
CV+ L EL+ + K VK +KEKLKV R + A+ + SAK+RKQ E+ +D +T
Sbjct: 61 CVNILEELLSDMIKYKDTVKEFRKEKLKVAREIGAEMSPSAKRRKQEETCSDMHGPTTHI 120
Query: 610 TNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQ 789
+ G++ R+K++Q+++ Q + + S ST + F
Sbjct: 121 NLPSEGAKESPVAQKRKTSTQGESGTKRKKVSQKQT-------QSVSPSGSNTSTTAGFP 173
Query: 790 TLQTTAPTPSRISYTEEKKDTTTE 861
L T+P+ S ++ + + + +
Sbjct: 174 PLPQTSPSASSSTHLPKNQKSQVQ 197
>ref|XP_003355162.1| PREDICTED: myeloid cell nuclear differentiation antigen-like [Sus
scrofa].
Length = 410
Score = 134 bits (336), Expect = 9e-32
Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 3/204 (1%)
Frame = +1
Query: 259 MGNEFKRIVLLKGFQHMDDYHFKMIKSLLAHDLRLTRKMQEEYDRIKIADLMEERFRGAA 438
M N++K+I+LLKG + +D+YHF MIKSLLAHDL LTR+MQ+ YDR+KIADLME +F G
Sbjct: 1 MTNKYKKIILLKGLEKIDEYHFSMIKSLLAHDLELTREMQDNYDRVKIADLMELKFPGIT 60
Query: 439 CVDKLIELVKGIDDIKHLVKPLQKEKLKVLRRLNAKETASAKKRKQNESSTD---ESTSA 609
CV+ L EL+ + K VK +KEKLKV R + A+ + SAK+RKQ E+ +D +T
Sbjct: 61 CVNILEELLSDMIKYKDTVKEFRKEKLKVAREIGAEMSPSAKRRKQEETCSDMHGPTTHI 120
Query: 610 TNEASGSEXXXXXXXXXXXXXXXXXXXRRKLTQEESQLPGTSRQLLESATSTQSTESLFQ 789
+ G++ R+K++Q+++ Q + + S ST + F
Sbjct: 121 NLPSEGAKESPVAQKRKTSTQGESGTKRKKVSQKQT-------QSVSPSGSNTSTTAGFP 173
Query: 790 TLQTTAPTPSRISYTEEKKDTTTE 861
L T+P+ S ++ + + + +
Sbjct: 174 PLPQTSPSASSSTHLPKNQKSQVQ 197
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,194,910
Number of extensions: 392459
Number of successful extensions: 1035
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 4
Length of query: 294
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,904,026
Effective search space: 1745189096
Effective search space used: 1745189096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002654
(882 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 569 e-160
>Sscrofa_Chr04
|| Length = 143465943
Score = 569 bits (287), Expect = e-160
Identities = 287/287 (100%)
Strand = Plus / Minus
Query: 237 aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391298 aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 99391239
Query: 297 attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391238 attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 99391179
Query: 357 aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgccgacttgatgga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391178 aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgccgacttgatgga 99391119
Query: 417 agaaaggttccgaggggctgcctgtgttgacaaactaatagagttggtcaaaggaattga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391118 agaaaggttccgaggggctgcctgtgttgacaaactaatagagttggtcaaaggaattga 99391059
Query: 477 tgatattaaacaccttgttaaacctcttcaaaaggagaagttaaaag 523
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99391058 tgatattaaacaccttgttaaacctcttcaaaaggagaagttaaaag 99391012
Score = 331 bits (167), Expect = 4e-88
Identities = 176/179 (98%)
Strand = Plus / Minus
Query: 656 agaaaaataaaaccacagaaactaatgaatctaaaaggaggaagctaacccaggaggaaa 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389085 agaaaaataaaaccacagaaactaatgaatctaaaaggaggaagctaacccaggaggaaa 99389026
Query: 716 gtcagctcccaggaacttccaggcagctcctagagtcagcaaccagcacacagtccactg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389025 gtcagctcccaggaacttccaggcagctcctagagtcagcaaccagcacacagtccactg 99388966
Query: 776 agagccttttccaaactcttcaaacgactgcaccaaccccatccagaatttcctacacc 834
||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 99388965 agagccttttccagactcttcaaacgcctgcaccaaccccatccagaatttcctccacc 99388907
Score = 327 bits (165), Expect = 6e-87
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 75 cttttacttctgcccttctggaggttataaaattttgcattcagtctctgacagatttac 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99400019 cttttacttctgcccttctggaggttataaaattttgcattcagtctctgacagatttac 99399960
Query: 135 tgatttatcatcctacttaaacaaaataagcagtgatttctgcacttctaaagaaaacct 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99399959 tgatttatcatcctacttaaacaaaataagcagtgatttctgcacttctaaagaaaacct 99399900
Query: 195 caagatctggacttgagaagaaagtggaagaaattgccactgagg 239
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99399899 caagatctggacttgagaagaaagtggaagaaattgccactgagg 99399855
Score = 222 bits (112), Expect = 3e-55
Identities = 128/136 (94%)
Strand = Plus / Minus
Query: 522 agttttaaggagactcaatgcaaaagaaaccgcttcagcnnnnnnnngaaagcagaatga 581
||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 99389832 agttttaaggagactcaatgcaaaagaaaccgcttcagcaaaaaaaagaaagcagaatga 99389773
Query: 582 atccagtactgatgaatcgacatccgccacaaatgaagcttcgggatctgaatcaaccaa 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99389772 atccagtactgatgaatcgacatccgccacaaatgaagcttcgggatctgaatcaaccaa 99389713
Query: 642 gaatacacctatgaag 657
||||||||||||||||
Sbjct: 99389712 gaatacacctatgaag 99389697
Score = 119 bits (60), Expect = 3e-24
Identities = 141/168 (83%)
Strand = Plus / Minus
Query: 237 aggctcatccataacttgagcaatggggaatgaattcaagagaattgttctgctgaaagg 296
|||||||||||||||||||| ||| |||| ||| ||||| ||| |||||||||||||
Sbjct: 99425728 aggctcatccataacttgagacatgacgaataaatacaagaaaatcattctgctgaaagg 99425669
Query: 297 attccagcacatggatgattatcattttaagatgattaagtctctactggcccatgattt 356
||| || | || ||||| |||||||||| |||||||||||| ||||||| ||||||||
Sbjct: 99425668 attagagaaaatcgatgaatatcattttagtatgattaagtctttactggctcatgattt 99425609
Query: 357 aagactgacaagaaaaatgcaagaagaatacgacagaattaagattgc 404
| |||||| ||| |||||||||| | ||||||||| ||||||||||
Sbjct: 99425608 agaactgactagagaaatgcaagataactacgacagagttaagattgc 99425561
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,480,519
Number of extensions: 241
Number of successful extensions: 241
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 241
Number of HSP's successfully gapped: 7
Length of query: 882
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 861
Effective length of database: 2,808,413,156
Effective search space: 2418043727316
Effective search space used: 2418043727316
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)