Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040037.1| asparaginyl-tRNA synthetase, cytoplasmic [Bo... 823 0.0
Alignment gi|NP_001092337.1| probable asparaginyl-tRNA synthetase, mitoch... 107 4e-23
Alignment gi|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos t... 96 8e-20
Alignment gi|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial prec... 57 3e-08
Alignment gi|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 56 1e-07
>ref|NP_001040037.1| asparaginyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 559
Score = 823 bits (2126), Expect = 0.0
Identities = 405/452 (89%), Positives = 423/452 (93%), Gaps = 1/452 (0%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MSL+V RA AGMVLAELYVSDREG+D TGDGTKEKPFKTGLKALMT GKEPFPTIYVDSQ
Sbjct: 1 MSLEVVRAAAGMVLAELYVSDREGNDVTGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQ 60
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNIRK+WHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL
Sbjct: 61 KENERWDVISKSQMKNIRKLWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 120
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEPKCVKI L+GYRGQR+KVFGWVHRLRRQGKNLMFLVLRDGTG+LQCVLSDDLCQCYN
Sbjct: 121 PEPKCVKIRELKGYRGQRIKVFGWVHRLRRQGKNLMFLVLRDGTGFLQCVLSDDLCQCYN 180
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVLSTESSVAVYG+L LTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ
Sbjct: 181 GVVLSTESSVAVYGVLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 240
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 1005
LNNRHMMIRGENMSKILKARSVITRCFR+HFFDRGY+E+TPPTLVQTQVEGGATLFKLDY
Sbjct: 241 LNNRHMMIRGENMSKILKARSVITRCFRDHFFDRGYHEITPPTLVQTQVEGGATLFKLDY 300
Query: 1006 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 1185
FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE
Sbjct: 301 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 360
Query: 1186 LLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKR 1362
LLNRLEDLVCDVV+RV+KS A IVR+LNPNFKPP+RPF+ MNYSDAIVWLK+ I ++
Sbjct: 361 LLNRLEDLVCDVVDRVLKSPAGNIVRDLNPNFKPPKRPFKRMNYSDAIVWLKEHNIKKED 420
Query: 1363 MDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
F G DIPEAPERLMTDTI FP
Sbjct: 421 GTFYEFGEDIPEAPERLMTDTINEPILLCRFP 452
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P + P F+ K HNIKKE+G + E P + NEPILLC
Sbjct: 390 PNFKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLC 449
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 450 RFPVEIKSFYMQ 461
>ref|NP_001092337.1| probable asparaginyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 477
Score = 107 bits (266), Expect = 4e-23
Identities = 79/266 (29%), Positives = 124/266 (46%), Gaps = 11/266 (4%)
Frame = +1
Query: 496 LEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSV 675
++ G+RVKV GW+ +R Q K ++FL + DG+ + D ++ L+ SSV
Sbjct: 36 VQSANGERVKVQGWIRSIRSQ-KEVLFLHVNDGSSLESLQVVAD--SSFDSRELAFGSSV 92
Query: 676 AVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRG 855
V G L +P KQ EL + E++G A E ++ H+ R
Sbjct: 93 EVQGQLVKSPSKKQ---NVELKAEKIEVVGSCDAKAFPFKYKERHPLEYLRQYPHLRCRT 149
Query: 856 ENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD----------- 1002
+ +L+ RS T F D G+ + P + EG LF+++
Sbjct: 150 NVLGSVLRVRSEATAAIHSFFKDSGFVHIHTPVITSNDCEGAGELFQVEPSSKIKVPEEN 209
Query: 1003 YFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFE 1182
+F +LT S QL+LE A VF ++RAE S++RRHLAE+ VEAE F
Sbjct: 210 FFNIPVFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMVEAEISF---- 265
Query: 1183 ELLNRLEDLVCDVVERVMKSSAAGIV 1260
L L+DL+ V+E + K++A ++
Sbjct: 266 --LESLQDLM-QVMESLFKTTAMTVL 288
>ref|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 501
Score = 95.9 bits (237), Expect = 8e-20
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R I + +S I FRE ++G+ E+ P ++ EGGA +F
Sbjct: 177 DTRLDNRVIDLRTSTSQAIFRLQSGICHPFRETLTNKGFVEIQTPKIISAASEGGANVFT 236
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 237 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 296
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + K I + +N F P PF+ + Y +A+
Sbjct: 297 YHYHEVVEEIADTLVQIFKGLQKRFQTEI-QTVNKQF--PCEPFKFLEPTLRLEYCEALA 353
Query: 1333 WLKD 1344
L++
Sbjct: 354 MLRE 357
>ref|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 651
Score = 57.4 bits (137), Expect = 3e-08
Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 14/248 (5%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVL---STESSVAV 681
GQ V + GW+ + RRQ +FLVLRD G +Q V+ D +L ES V V
Sbjct: 60 GQEVTLCGWI-QFRRQN---IFLVLRDFHGLVQVVIPQDESAASVKKILCEAPMESVVQV 115
Query: 682 YGMLKLTPKGKQAP----GGHELSCDFWELIGLA---PAGGADNLINEESDVDVQLNNRH 840
G + P G++ P G E+ +L+ P D + E+ ++L R+
Sbjct: 116 SGTVISRPPGQKNPKMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTET---LRLQYRY 172
Query: 841 MMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF--G 1011
+ +R M L+ RS + RE+ + G+ +V PTL + + GGA F + G
Sbjct: 173 LDLRSVQMQYNLRLRSQMVMKMREYLCNLHGFVDVETPTLFK-RTPGGAKEFVIPSREPG 231
Query: 1012 EEAYLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEEL 1188
+ L QS Q + + + L F +A+ YR E SR R E+T ++ E F+ +
Sbjct: 232 KFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQTGV 290
Query: 1189 LNRLEDLV 1212
+ +E L+
Sbjct: 291 QSLIEGLL 298
>ref|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Bos taurus].
Length = 456
Score = 55.8 bits (133), Expect = 1e-07
Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 14/248 (5%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVL---STESSVAV 681
GQ V + GW+ + RRQ +FLVLRD G +Q V+ D +L ES V V
Sbjct: 60 GQEVTLCGWI-QFRRQN---IFLVLRDFHGLVQVVIPQDESAASVKKILCEAPMESVVQV 115
Query: 682 YGMLKLTPKGKQAP----GGHELSCDFWELIGLA---PAGGADNLINEESDVDVQLNNRH 840
G + P G++ P G E+ +L+ P D + E+ ++L R+
Sbjct: 116 SGTVISRPPGQKNPKMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTET---LRLQYRY 172
Query: 841 MMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF--G 1011
+ +R M L+ RS + RE+ + G+ +V PTL + + GGA F + G
Sbjct: 173 LDLRSVQMQYNLRLRSQMVMKMREYLCNLHGFVDVETPTLFK-RTPGGAKEFVIPSREPG 231
Query: 1012 EEAYLTQSSQLYLET-CIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEEL 1188
+ L QS Q + + L F +A+ YR E SR R E+T ++ E F+ +
Sbjct: 232 KFYSLPQSPQQFKPPHMLGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQTGV 290
Query: 1189 LNRLEDLV 1212
+ +E L+
Sbjct: 291 QSLIEGLL 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,690,310
Number of extensions: 1457943
Number of successful extensions: 5053
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5029
Number of HSP's successfully gapped: 6
Length of query: 495
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 389
Effective length of database: 14,174,046
Effective search space: 5513703894
Effective search space used: 5513703894
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849060.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 820 0.0
Alignment gi|XP_857814.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 802 0.0
Alignment gi|XP_857854.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 780 0.0
Alignment gi|XP_851061.1| PREDICTED: similar to CG6796-PA [Canis familiar... 107 3e-23
Alignment gi|XP_856839.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 97 4e-20
Alignment gi|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 97 4e-20
Alignment gi|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase ... 90 6e-18
Alignment gi|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase ... 60 4e-09
>ref|XP_849060.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 1 [Canis
familiaris].
Length = 559
Score = 820 bits (2117), Expect = 0.0
Identities = 404/452 (89%), Positives = 421/452 (93%), Gaps = 1/452 (0%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MSL+ T TAGMVLAELYVSDREG+DATGDGTKEKPFKTGLKALMT GKEPFPTIY+DSQ
Sbjct: 1 MSLEATGPTAGMVLAELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYIDSQ 60
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNI+KMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL
Sbjct: 61 KENERWDVISKSQMKNIKKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 120
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEPKCVKI ALE YRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN
Sbjct: 121 PEPKCVKIHALEEYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 180
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVL+TESSV VYG L LTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ
Sbjct: 181 GVVLATESSVTVYGTLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 240
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 1005
LNNRHMMIRGENMSKILKARSV+TRCFR+HFFDRGYYEVTPPTLVQTQVEGGATLFKLDY
Sbjct: 241 LNNRHMMIRGENMSKILKARSVVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 300
Query: 1006 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 1185
FGEEA+LTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE
Sbjct: 301 FGEEAFLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 360
Query: 1186 LLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKR 1362
LLNRLEDLVCDVV+RV+KS A IVR+LNPNFKPP+RPF+ MNYSDAIVWLK+ I ++
Sbjct: 361 LLNRLEDLVCDVVDRVLKSPAGSIVRDLNPNFKPPKRPFKRMNYSDAIVWLKEHNIKKED 420
Query: 1363 MDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
F G DIPEAPERLMTD+I FP
Sbjct: 421 GTFYEFGEDIPEAPERLMTDSINEPILLCRFP 452
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P + P F+ K HNIKKE+G + E P + NEPILLC
Sbjct: 390 PNFKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDSINEPILLC 449
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 450 RFPVEIKSFYMQ 461
>ref|XP_857814.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 2 [Canis
familiaris].
Length = 563
Score = 802 bits (2071), Expect = 0.0
Identities = 400/456 (87%), Positives = 419/456 (91%), Gaps = 5/456 (1%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MSL+ T TAGMVLAELYVSDREG+DATGDGTKEKPFKTGLKALMT GKEPFPTIY+DSQ
Sbjct: 1 MSLEATGPTAGMVLAELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYIDSQ 60
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNI+KMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL
Sbjct: 61 KENERWDVISKSQMKNIKKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 120
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEPKCVKI ALE YRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN
Sbjct: 121 PEPKCVKIHALEEYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 180
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVL+TESSV VYG L LTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ
Sbjct: 181 GVVLATESSVTVYGTLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 240
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVT--PPTL--VQTQVEGGATLF 993
LNNRHMMIRGENMSKILKARSV+TRCFR+HFFDRGYYEV+ P + VQTQVEGGATLF
Sbjct: 241 LNNRHMMIRGENMSKILKARSVVTRCFRDHFFDRGYYEVSVYPSSFANVQTQVEGGATLF 300
Query: 994 KLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL 1173
KLDYFGEEA+LTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL
Sbjct: 301 KLDYFGEEAFLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL 360
Query: 1174 TFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI 1350
TFEELLNRLEDLVCDVV+RV+KS A IVR+LNPNFKPP+RPF+ MNYSDAIVWLK+ I
Sbjct: 361 TFEELLNRLEDLVCDVVDRVLKSPAGSIVRDLNPNFKPPKRPFKRMNYSDAIVWLKEHNI 420
Query: 1351 *RKRMDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
++ F G DIPEAPERLMTD+I FP
Sbjct: 421 KKEDGTFYEFGEDIPEAPERLMTDSINEPILLCRFP 456
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P + P F+ K HNIKKE+G + E P + NEPILLC
Sbjct: 394 PNFKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDSINEPILLC 453
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 454 RFPVEIKSFYMQ 465
>ref|XP_857854.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 3 [Canis
familiaris].
Length = 559
Score = 780 bits (2014), Expect = 0.0
Identities = 390/452 (86%), Positives = 408/452 (90%), Gaps = 1/452 (0%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MSL+ T TAGMVLAELYVSDREG+DATGDGTKEKPFKTGLKALMT GKEPFPTIY+DSQ
Sbjct: 1 MSLEATGPTAGMVLAELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYIDSQ 60
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNI+KMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL
Sbjct: 61 KENERWDVISKSQMKNIKKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 120
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEPKCVKI ALE YRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN
Sbjct: 121 PEPKCVKIHALEEYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 180
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVL+TESSV VYG L LTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ
Sbjct: 181 GVVLATESSVTVYGTLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 240
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 1005
LNNRHMMIRGENMSKILKARSV + + +VTPPTLVQTQVEGGATLFKLDY
Sbjct: 241 LNNRHMMIRGENMSKILKARSVWPSQLAFVYSSSAFEQVTPPTLVQTQVEGGATLFKLDY 300
Query: 1006 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 1185
FGEEA+LTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE
Sbjct: 301 FGEEAFLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 360
Query: 1186 LLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKR 1362
LLNRLEDLVCDVV+RV+KS A IVR+LNPNFKPP+RPF+ MNYSDAIVWLK+ I ++
Sbjct: 361 LLNRLEDLVCDVVDRVLKSPAGSIVRDLNPNFKPPKRPFKRMNYSDAIVWLKEHNIKKED 420
Query: 1363 MDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
F G DIPEAPERLMTD+I FP
Sbjct: 421 GTFYEFGEDIPEAPERLMTDSINEPILLCRFP 452
Score = 52.4 bits (124), Expect = 1e-06
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P + P F+ K HNIKKE+G + E P + NEPILLC
Sbjct: 390 PNFKPPKRPFKRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDSINEPILLC 449
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 450 RFPVEIKSFYMQ 461
>ref|XP_851061.1| PREDICTED: similar to CG6796-PA [Canis familiaris].
Length = 477
Score = 107 bits (267), Expect = 3e-23
Identities = 86/301 (28%), Positives = 136/301 (45%), Gaps = 22/301 (7%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGM 690
G+RVKV GW+ +R Q K ++FL + DG+ + D ++ L+ SSV V G
Sbjct: 41 GERVKVQGWIRSVRSQ-KEVLFLHINDGSSLESLQVVAD--SSFDNRELAFGSSVEVQGQ 97
Query: 691 LKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSK 870
L +P KQ EL + E++G A E ++ H+ R +
Sbjct: 98 LVKSPSKKQ---NMELKAEKIEVVGNCDATAFPFKYKERHPLEYLRQYPHLRCRTNALGS 154
Query: 871 ILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD-----------YFGEE 1017
IL+ RS T F D G+ + P + EG LF+++ +F
Sbjct: 155 ILRVRSEATAAIHSFFKDNGFVHIHTPIITSNDCEGAGELFQVEPSSKIKMPEENFFNVP 214
Query: 1018 AYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL-TFEELLN 1194
A+LT S QL+LE A VF ++RAE S++RRHLAE+ VEAE F+ + ++L+
Sbjct: 215 AFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMVEAEISFVESLQDLMQ 274
Query: 1195 RLEDLVCDVVERVMKSSAAGIVRELNPNFKPP----------QRPFRPMNYSDAIVWLKD 1344
+E L V+ + + EL F P + F ++Y++A+ LK
Sbjct: 275 VMEGLFKTATMMVLSNCPEDV--ELCHKFIAPGQKERLEHMLKNNFLIISYTEAVEILKQ 332
Query: 1345 T 1347
+
Sbjct: 333 S 333
>ref|XP_856839.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 4 [Canis familiaris].
Length = 470
Score = 97.1 bits (240), Expect = 4e-20
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R + + +S I FRE ++G+ E+ P ++ EGGA +F
Sbjct: 146 DTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFT 205
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 206 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 265
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + K I + +N F P PF+ + Y +A+
Sbjct: 266 YHYHEVVEEIADTLVQIFKGLQKRFQTEI-QTVNKQF--PCEPFKFLEPTLRLEYCEALA 322
Query: 1333 WLKD 1344
L++
Sbjct: 323 MLRE 326
>ref|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 2 [Canis familiaris].
Length = 501
Score = 97.1 bits (240), Expect = 4e-20
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R + + +S I FRE ++G+ E+ P ++ EGGA +F
Sbjct: 177 DTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFT 236
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 237 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 296
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + K I + +N F P PF+ + Y +A+
Sbjct: 297 YHYHEVVEEIADTLVQIFKGLQKRFQTEI-QTVNKQF--PCEPFKFLEPTLRLEYCEALA 353
Query: 1333 WLKD 1344
L++
Sbjct: 354 MLRE 357
>ref|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 1 [Canis familiaris].
Length = 481
Score = 89.7 bits (221), Expect = 6e-18
Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Frame = +1
Query: 847 IRGENMSK---ILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEE 1017
+ GE S + + +S I FRE ++G+ E+ P ++ EGGA +F + YF
Sbjct: 164 VEGEETSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYFKNN 223
Query: 1018 AYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF-LTFEELL 1191
AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F + E++
Sbjct: 224 AYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYHYHEVV 283
Query: 1192 NRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIVWLKD 1344
+ D + + + + K I + +N F P PF+ + Y +A+ L++
Sbjct: 284 EEIADTLVQIFKGLQKRFQTEI-QTVNKQF--PCEPFKFLEPTLRLEYCEALAMLRE 337
>ref|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase 2 (mitochondrial)
[Canis familiaris].
Length = 652
Score = 60.5 bits (145), Expect = 4e-09
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 14/248 (5%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVL---STESSVAV 681
GQ V + GW+ + RRQ +FLVLRD G +Q V+ D +L ES V V
Sbjct: 61 GQEVTLCGWI-QYRRQN---VFLVLRDSHGLIQVVIPQDESAASVKKILCEAPVESVVRV 116
Query: 682 YGMLKLTPKGKQAP----GGHELSCDFWELIGLA---PAGGADNLINEESDVDVQLNNRH 840
G + P G++ P G E+ EL+ P D + E+ ++L R+
Sbjct: 117 SGTVISRPPGQENPKMPTGEIEIKVKTAELLNSCKKLPFEIKDFVKKTEA---LRLQYRY 173
Query: 841 MMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF--G 1011
+ +R M L+ RS + RE+ + G+ +V PTL + + GGA F + G
Sbjct: 174 LDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDVETPTLFK-RTPGGAKEFVIPSREPG 232
Query: 1012 EEAYLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEEL 1188
+ L QS Q + + + L F +A+ YR E SR R E+T ++ E F+ +
Sbjct: 233 KFYCLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQTGI 291
Query: 1189 LNRLEDLV 1212
+ +E L+
Sbjct: 292 QSLIEGLL 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,219,173
Number of extensions: 1512744
Number of successful extensions: 5611
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5568
Number of HSP's successfully gapped: 11
Length of query: 495
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 388
Effective length of database: 15,307,552
Effective search space: 5939330176
Effective search space used: 5939330176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004530.1| asparaginyl-tRNA synthetase, cytoplasmic [Homo ... 802 0.0
Alignment gi|NP_078954.4| probable asparaginyl-tRNA synthetase, mitochond... 102 1e-21
Alignment gi|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sap... 92 1e-18
Alignment gi|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precurs... 57 3e-08
>ref|NP_004530.1| asparaginyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 548
Score = 802 bits (2071), Expect = 0.0
Identities = 391/441 (88%), Positives = 415/441 (94%), Gaps = 1/441 (0%)
Frame = +1
Query: 139 MVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQKENERWDVISK 318
MVLAELYVSDREGSDATGDGTKEKPFKTGLKALMT GKEPFPTIYVDSQKENERW+VISK
Sbjct: 1 MVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQKENERWNVISK 60
Query: 319 SQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSLPEPKCVKICAL 498
SQ+KNI+KMWHREQMKSESREKKEAED+LRREKNLEEAKKITIKNDPSLPEPKCVKI AL
Sbjct: 61 SQLKNIKKMWHREQMKSESREKKEAEDSLRREKNLEEAKKITIKNDPSLPEPKCVKIGAL 120
Query: 499 EGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVA 678
EGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVL+D+LCQCYNGV+LSTESSVA
Sbjct: 121 EGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLADELCQCYNGVLLSTESSVA 180
Query: 679 VYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGE 858
VYGML LTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGE
Sbjct: 181 VYGMLNLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGE 240
Query: 859 NMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEAYLTQSS 1038
NMSKILKARS++TRCFR+HFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEA+LTQSS
Sbjct: 241 NMSKILKARSMVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFKLDYFGEEAFLTQSS 300
Query: 1039 QLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCD 1218
QLYLETC+PALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTF++LLNRLEDLVCD
Sbjct: 301 QLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFDDLLNRLEDLVCD 360
Query: 1219 VVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKRMDFLPIGRDIP 1395
VV+R++KS A IV ELNPNF+PP+RPF+ MNYSDAIVWLK+ + ++ F G DIP
Sbjct: 361 VVDRILKSPAGSIVHELNPNFQPPKRPFKRMNYSDAIVWLKEHDVKKEDGTFYEFGEDIP 420
Query: 1396 EAPERLMTDTIMSRFCCVGFP 1458
EAPERLMTDTI FP
Sbjct: 421 EAPERLMTDTINEPILLCRFP 441
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/72 (41%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P Q P F+ K H++KKE+G + E P + NEPILLC
Sbjct: 379 PNFQPPKRPFKRMNYSDAIVWLKEHDVKKEDGTFYEFGEDIPEAPERLMTDTINEPILLC 438
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 439 RFPVEIKSFYMQ 450
>ref|NP_078954.4| probable asparaginyl-tRNA synthetase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 477
Score = 102 bits (253), Expect = 1e-21
Identities = 76/247 (30%), Positives = 117/247 (47%), Gaps = 14/247 (5%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGY--LQCVLSDDLCQCYNGVVLSTESSVAVY 684
G+R+K+ GW+ +R Q K ++FL + DG+ LQ V L + L+ SSV V
Sbjct: 41 GERIKIQGWIRSVRSQ-KEVLFLHVNDGSSLESLQVVADSGL----DSRELNFGSSVEVQ 95
Query: 685 GMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENM 864
G L +P +Q EL + ++IG A E ++ H R +
Sbjct: 96 GQLIKSPSKRQ---NVELKAEKIKVIGNCDAKDFPIKYKERHPLEYLRQYPHFRCRTNVL 152
Query: 865 SKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD-----------YFG 1011
IL+ RS T F D G+ + P + EG LF+L+ +F
Sbjct: 153 GSILRIRSEATAAIHSFFKDSGFVHIHTPIITSNDSEGAGELFQLEPSGKLKVPEENFFN 212
Query: 1012 EEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL-TFEEL 1188
A+LT S QL+LE A VF ++RAE S++RRHLAE+ +EAE F+ + ++L
Sbjct: 213 VPAFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMIEAEISFVDSLQDL 272
Query: 1189 LNRLEDL 1209
+ +E+L
Sbjct: 273 MQVIEEL 279
>ref|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 501
Score = 92.0 bits (227), Expect = 1e-18
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R + + +S I FRE ++G+ E+ P ++ EGGA +F
Sbjct: 177 DTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFT 236
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VF I +RAE S T RHL E+ ++ E F
Sbjct: 237 VSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 296
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + + I + +N F P PF+ + Y +A+
Sbjct: 297 YHYHEVMEEIADTMVQIFKGLQERFQTEI-QTVNKQF--PCEPFKFLEPTLRLEYCEALA 353
Query: 1333 WLKD 1344
L++
Sbjct: 354 MLRE 357
>ref|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 645
Score = 57.4 bits (137), Expect = 3e-08
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 11/245 (4%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVL---STESSVAV 681
GQ V + GW+ + RRQ FLVLRD G +Q ++ D +L ES V V
Sbjct: 63 GQEVTLCGWI-QYRRQNT---FLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQV 118
Query: 682 YGMLKLTPKGKQAP----GGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMI 849
G + P G++ P G E+ EL+ + + ++L R++ +
Sbjct: 119 SGTVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDL 178
Query: 850 RGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF--GEEA 1020
R M L+ RS + RE+ + G+ ++ PTL + + GGA F + G+
Sbjct: 179 RSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFLVPSREPGKFY 237
Query: 1021 YLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEELLNR 1197
L QS Q + + + L F +A+ YR E SR R E+T ++ E F+ + +
Sbjct: 238 SLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQTGIQSL 296
Query: 1198 LEDLV 1212
+E L+
Sbjct: 297 IEGLL 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,180,557
Number of extensions: 1496331
Number of successful extensions: 5462
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5431
Number of HSP's successfully gapped: 5
Length of query: 495
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 388
Effective length of database: 14,770,016
Effective search space: 5730766208
Effective search space used: 5730766208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136422.1| asparaginyl-tRNA synthetase, cytoplasmic iso... 803 0.0
Alignment gi|NP_081626.2| asparaginyl-tRNA synthetase, cytoplasmic isofor... 796 0.0
Alignment gi|NP_705819.3| probable asparaginyl-tRNA synthetase, mitochond... 103 4e-22
Alignment gi|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1... 94 3e-19
Alignment gi|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precurs... 55 1e-07
>ref|NP_001136422.1| asparaginyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 559
Score = 803 bits (2073), Expect = 0.0
Identities = 397/452 (87%), Positives = 416/452 (92%), Gaps = 1/452 (0%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MS +V R TA MVLAELYVSDREG+DATGDGTKEKPFKTGLKALMT GKEPFPTIYVDSQ
Sbjct: 1 MSSEVIRGTAEMVLAELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQ 60
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNI+KMWHREQMK++SREKKEAEDNLRREKNLEEAKKI IKNDPSL
Sbjct: 61 KENERWDVISKSQMKNIKKMWHREQMKNDSREKKEAEDNLRREKNLEEAKKIIIKNDPSL 120
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEP CVKI ALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN
Sbjct: 121 PEPACVKISALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 180
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVLSTESSVAVYG L LTPKGKQAPGGHELSCDFWEL+GLAPAGGADNLINEESDVDVQ
Sbjct: 181 GVVLSTESSVAVYGTLNLTPKGKQAPGGHELSCDFWELVGLAPAGGADNLINEESDVDVQ 240
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 1005
LNNRHMMIRGENMSKILKARS+ITRCFR+HFFDRGY EVT PTLVQTQVEGGATLFKLDY
Sbjct: 241 LNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQVEGGATLFKLDY 300
Query: 1006 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 1185
FGEEA+LTQSSQLYLETC+PALGDVFCIAQSYRAEQSRTRRHLAE+THVEAECPFLTFE+
Sbjct: 301 FGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEFTHVEAECPFLTFED 360
Query: 1186 LLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKR 1362
LLNRLEDLVCDVV+RV+KS A IV ELNPNFKPP+RPFR MNYSDAI WLK+ + ++
Sbjct: 361 LLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKPPKRPFRRMNYSDAIEWLKEHDVKKED 420
Query: 1363 MDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
F G DIPEAPERLMTDTI FP
Sbjct: 421 GTFYEFGDDIPEAPERLMTDTINEPILLCRFP 452
>ref|NP_081626.2| asparaginyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 558
Score = 796 bits (2057), Expect = 0.0
Identities = 396/452 (87%), Positives = 415/452 (91%), Gaps = 1/452 (0%)
Frame = +1
Query: 106 MSLDVTRATAGMVLAELYVSDREGSDATGDGTKEKPFKTGLKALMTAGKEPFPTIYVDSQ 285
MS +V R TA MVL ELYVSDREG+DATGDGTKEKPFKTGLKALMT GKEPFPTIYVDSQ
Sbjct: 1 MSSEVIRGTAEMVL-ELYVSDREGNDATGDGTKEKPFKTGLKALMTVGKEPFPTIYVDSQ 59
Query: 286 KENERWDVISKSQMKNIRKMWHREQMKSESREKKEAEDNLRREKNLEEAKKITIKNDPSL 465
KENERWDVISKSQMKNI+KMWHREQMK++SREKKEAEDNLRREKNLEEAKKI IKNDPSL
Sbjct: 60 KENERWDVISKSQMKNIKKMWHREQMKNDSREKKEAEDNLRREKNLEEAKKIIIKNDPSL 119
Query: 466 PEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 645
PEP CVKI ALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN
Sbjct: 120 PEPACVKISALEGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYN 179
Query: 646 GVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQ 825
GVVLSTESSVAVYG L LTPKGKQAPGGHELSCDFWEL+GLAPAGGADNLINEESDVDVQ
Sbjct: 180 GVVLSTESSVAVYGTLNLTPKGKQAPGGHELSCDFWELVGLAPAGGADNLINEESDVDVQ 239
Query: 826 LNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLDY 1005
LNNRHMMIRGENMSKILKARS+ITRCFR+HFFDRGY EVT PTLVQTQVEGGATLFKLDY
Sbjct: 240 LNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQVEGGATLFKLDY 299
Query: 1006 FGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTFEE 1185
FGEEA+LTQSSQLYLETC+PALGDVFCIAQSYRAEQSRTRRHLAE+THVEAECPFLTFE+
Sbjct: 300 FGEEAFLTQSSQLYLETCLPALGDVFCIAQSYRAEQSRTRRHLAEFTHVEAECPFLTFED 359
Query: 1186 LLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFRPMNYSDAIVWLKD-TI*RKR 1362
LLNRLEDLVCDVV+RV+KS A IV ELNPNFKPP+RPFR MNYSDAI WLK+ + ++
Sbjct: 360 LLNRLEDLVCDVVDRVLKSPVASIVYELNPNFKPPKRPFRRMNYSDAIEWLKEHDVKKED 419
Query: 1363 MDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
F G DIPEAPERLMTDTI FP
Sbjct: 420 GTFYEFGDDIPEAPERLMTDTINEPILLCRFP 451
>ref|NP_705819.3| probable asparaginyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 477
Score = 103 bits (257), Expect = 4e-22
Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 12/255 (4%)
Frame = +1
Query: 508 RGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYG 687
RG+ V V GW+ +R Q K ++FL + DG+ + D ++ L+ SSV V G
Sbjct: 40 RGECVTVQGWIRSVRSQ-KEVLFLHVNDGSSLESLQIVAD--SSFDSRELTFGSSVQVQG 96
Query: 688 MLKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMS 867
L + +Q EL + E+IG A E ++ H+ R +
Sbjct: 97 QLVKSQSKRQ---NVELKAEKIEVIGDCEAKAFPIKYKERHPLEYLRQYPHLRCRTNALG 153
Query: 868 KILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD-----------YFGE 1014
IL+ RS T +F D G+ + P L EG LF+++ +F
Sbjct: 154 SILRVRSEATAAIHSYFKDNGFVHIHTPVLTSNDCEGAGELFQVEPSSKIKGPKESFFDV 213
Query: 1015 EAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL-TFEELL 1191
A+LT S QL+LE A VF ++RAE S++RRHLAE+ VEAE F+ + ++L+
Sbjct: 214 PAFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQSRRHLAEFYMVEAEISFVESLQDLM 273
Query: 1192 NRLEDLVCDVVERVM 1236
+E+L E V+
Sbjct: 274 QVMEELFKATTEMVL 288
>ref|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 501
Score = 94.0 bits (232), Expect = 3e-19
Identities = 57/184 (30%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R I + +S I FRE ++G+ E+ P ++ EGGA +F
Sbjct: 177 DTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFT 236
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 237 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 296
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + + I + ++ F P PF+ + Y +A+
Sbjct: 297 YHYHEVVEEIADTLVQIFKGLQERFQTEI-QTVSKQF--PCEPFKFLEPTLRLEYCEALA 353
Query: 1333 WLKD 1344
L++
Sbjct: 354 MLRE 357
>ref|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 653
Score = 55.5 bits (132), Expect = 1e-07
Identities = 71/254 (27%), Positives = 113/254 (44%), Gaps = 20/254 (7%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDD---------LCQCYNGVVLST 663
GQ V + GW+ + RRQ FLVLRD G +Q ++ D LC+
Sbjct: 62 GQEVTLCGWI-QYRRQNT---FLVLRDCHGLVQILIPQDESAASVRRILCEA------PV 111
Query: 664 ESSVAVYGMLKLTPKGKQAP----GGHELSCDFWELIGLA---PAGGADNLINEESDVDV 822
ES V V G + P G++ P G E+ EL+ P D + E+ +
Sbjct: 112 ESVVRVSGTVISRPPGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKDFVKKTEA---L 168
Query: 823 QLNNRHMMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKL 999
+L R++ +R M L+ RS + RE+ + G+ ++ PTL + + GGA F +
Sbjct: 169 RLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFLV 227
Query: 1000 DYF--GEEAYLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 1170
G+ L QS Q + + + L F +A+ YR E SR R E+T ++ E F
Sbjct: 228 PSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSF 286
Query: 1171 LTFEELLNRLEDLV 1212
+ + +E L+
Sbjct: 287 VEQTGIQRLVEGLL 300
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,563,165
Number of extensions: 1267532
Number of successful extensions: 4617
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4575
Number of HSP's successfully gapped: 5
Length of query: 495
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 390
Effective length of database: 12,463,779
Effective search space: 4860873810
Effective search space used: 4860873810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121503.2| PREDICTED: asparaginyl-tRNA synthetase, cyto... 673 0.0
Alignment gi|XP_003129750.1| PREDICTED: probable asparaginyl-tRNA synthet... 106 3e-23
Alignment gi|XP_003359474.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 96 5e-20
Alignment gi|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 96 5e-20
Alignment gi|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 60 4e-09
Alignment gi|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitocho... 60 4e-09
Alignment gi|XP_003359927.1| PREDICTED: probable asparaginyl-tRNA synthet... 55 8e-08
>ref|XP_003121503.2| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic-like [Sus
scrofa].
Length = 469
Score = 673 bits (1736), Expect = 0.0
Identities = 334/357 (93%), Positives = 338/357 (94%), Gaps = 1/357 (0%)
Frame = +1
Query: 391 AEDNLRREKNLEEAKKITIKNDPSLPEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNL 570
AEDNLRREKNLEEAKKITIKNDPSLPEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNL
Sbjct: 6 AEDNLRREKNLEEAKKITIKNDPSLPEPKCVKICALEGYRGQRVKVFGWVHRLRRQGKNL 65
Query: 571 MFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDF 750
MFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDF
Sbjct: 66 MFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGMLKLTPKGKQAPGGHELSCDF 125
Query: 751 WELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRG 930
WELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRG
Sbjct: 126 WELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRG 185
Query: 931 YYEVTPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAE 1110
YYEVTPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAE
Sbjct: 186 YYEVTPPTLVQTQVEGGATLFKLDYFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAE 245
Query: 1111 QSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPP 1290
QSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPP
Sbjct: 246 QSRTRRHLAEYTHVEAECPFLTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPP 305
Query: 1291 QRPFRPMNYSDAIVWLKD-TI*RKRMDFLPIGRDIPEAPERLMTDTIMSRFCCVGFP 1458
+RPFR MNYSDAIVWLK+ I ++ F G DIPEAPERLMTDTI FP
Sbjct: 306 KRPFRRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLCRFP 362
Score = 52.4 bits (124), Expect = 7e-07
Identities = 31/72 (43%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 1272 PELQAPPTAFQTDELFRCYCVAKRHNIKKENGLSTNW-ERYPRSS*ETHDGYHNEPILLC 1448
P + P F+ K HNIKKE+G + E P + NEPILLC
Sbjct: 300 PNFKPPKRPFRRMNYSDAIVWLKEHNIKKEDGTFYEFGEDIPEAPERLMTDTINEPILLC 359
Query: 1449 RFPVEISSFYMQ 1484
RFPVEI SFYMQ
Sbjct: 360 RFPVEIKSFYMQ 371
>ref|XP_003129750.1| PREDICTED: probable asparaginyl-tRNA synthetase, mitochondrial [Sus
scrofa].
Length = 477
Score = 106 bits (265), Expect = 3e-23
Identities = 88/304 (28%), Positives = 136/304 (44%), Gaps = 23/304 (7%)
Frame = +1
Query: 499 EGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVA 678
+ G+RVKV GW+ +R Q K ++FL + DG+ + D ++ L+ SSV
Sbjct: 37 QNVNGERVKVQGWIRSVRSQ-KEVLFLHVNDGSSLESLQVVAD--SSFDSRELAFGSSVE 93
Query: 679 VYGMLKLTP-KGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRG 855
V G L +P KG+ EL + E++G E ++ H+ R
Sbjct: 94 VQGQLVKSPSKGQNV----ELKAEKIEVVGNCDVKAFPLKYKERHPLEYLRQYPHLRCRT 149
Query: 856 ENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD----------- 1002
+ IL+ RS T F D G+ + P + EG LF+++
Sbjct: 150 NVLGSILRVRSEATAAVHSFFKDSGFVHIHTPVITSNDCEGAGELFQVEPSSKIKVPDEN 209
Query: 1003 YFGEEAYLTQSSQLYLETCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFL-TF 1179
+F A+LT S QL+LE A VF ++RAE S+TRRHLAE+ VEAE FL +
Sbjct: 210 FFSVPAFLTVSGQLHLEVMSGAFTQVFTFGPTFRAENSQTRRHLAEFYMVEAEISFLESL 269
Query: 1180 EELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPP----------QRPFRPMNYSDAI 1329
++L+ +E L V+ S + EL F P + F ++Y++A+
Sbjct: 270 QDLMQVMEGLFKTATRAVLASCQEDV--ELCHKFIAPGQKDRLEHMLKHNFLVISYTEAV 327
Query: 1330 VWLK 1341
LK
Sbjct: 328 EILK 331
>ref|XP_003359474.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 2 [Sus
scrofa].
Length = 401
Score = 95.9 bits (237), Expect = 5e-20
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R + + +S I FRE+ ++G+ E+ P ++ EGGA +F
Sbjct: 77 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 136
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 137 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFN 196
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + + I + +N F P PF+ + Y +A+
Sbjct: 197 YHYHEVVEEIADTLVQIFKGLQERFQTEI-QMVNKQF--PCEPFKFLEPTLRLEYCEALA 253
Query: 1333 WLKD 1344
L++
Sbjct: 254 MLRE 257
>ref|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 1 [Sus
scrofa].
Length = 501
Score = 95.9 bits (237), Expect = 5e-20
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 817 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 996
D +L+NR + +R + + +S I FRE+ ++G+ E+ P ++ EGGA +F
Sbjct: 177 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 236
Query: 997 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF- 1170
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 237 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFN 296
Query: 1171 LTFEELLNRLEDLVCDVVERVMKSSAAGIVRELNPNFKPPQRPFR------PMNYSDAIV 1332
+ E++ + D + + + + + I + +N F P PF+ + Y +A+
Sbjct: 297 YHYHEVVEEIADTLVQIFKGLQERFQTEI-QMVNKQF--PCEPFKFLEPTLRLEYCEALA 353
Query: 1333 WLKD 1344
L++
Sbjct: 354 MLRE 357
>ref|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 552
Score = 59.7 bits (143), Expect = 4e-09
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 17/251 (6%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDD---------LCQCYNGVVLST 663
GQ V + GW+ + RRQ +FLVLRD G +Q V+ D LC+
Sbjct: 61 GQEVTLCGWI-QYRRQN---IFLVLRDFHGLVQVVIPQDESAASVRRILCEA------PV 110
Query: 664 ESSVAVYGMLKLTPKGKQAP----GGHELSCDFWELIGLAPAGGADNLINEESDVDVQLN 831
ES V V G + P G++ P G E+ +L+ + + ++L
Sbjct: 111 ESVVQVSGTVISRPPGQENPKMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQ 170
Query: 832 NRHMMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF 1008
R++ +RG M L+ RS + RE+ + G+ ++ PTL + + GGA F +
Sbjct: 171 YRYLDLRGAQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFVVPSR 229
Query: 1009 --GEEAYLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTF 1179
G+ L QS Q + + + L F IA+ YR E SR R E+T ++ E F+
Sbjct: 230 EPGKFYSLPQSPQQFKQLLMVGGLDRYFQIARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQ 288
Query: 1180 EELLNRLEDLV 1212
+ + +E L+
Sbjct: 289 TGIQSLIEGLL 299
>ref|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 651
Score = 59.7 bits (143), Expect = 4e-09
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 17/251 (6%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDD---------LCQCYNGVVLST 663
GQ V + GW+ + RRQ +FLVLRD G +Q V+ D LC+
Sbjct: 61 GQEVTLCGWI-QYRRQN---IFLVLRDFHGLVQVVIPQDESAASVRRILCEA------PV 110
Query: 664 ESSVAVYGMLKLTPKGKQAP----GGHELSCDFWELIGLAPAGGADNLINEESDVDVQLN 831
ES V V G + P G++ P G E+ +L+ + + ++L
Sbjct: 111 ESVVQVSGTVISRPPGQENPKMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQ 170
Query: 832 NRHMMIRGENMSKILKARSVITRCFREHFFD-RGYYEVTPPTLVQTQVEGGATLFKLDYF 1008
R++ +RG M L+ RS + RE+ + G+ ++ PTL + + GGA F +
Sbjct: 171 YRYLDLRGAQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFK-RTPGGAKEFVVPSR 229
Query: 1009 --GEEAYLTQSSQLYLE-TCIPALGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPFLTF 1179
G+ L QS Q + + + L F IA+ YR E SR R E+T ++ E F+
Sbjct: 230 EPGKFYSLPQSPQQFKQLLMVGGLDRYFQIARCYRDEGSRPDRQ-PEFTQIDIEMSFVDQ 288
Query: 1180 EELLNRLEDLV 1212
+ + +E L+
Sbjct: 289 TGIQSLIEGLL 299
>ref|XP_003359927.1| PREDICTED: probable asparaginyl-tRNA synthetase, mitochondrial-like
[Sus scrofa].
Length = 314
Score = 55.5 bits (132), Expect = 8e-08
Identities = 43/164 (26%), Positives = 70/164 (42%)
Frame = +1
Query: 511 GQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVLSDDLCQCYNGVVLSTESSVAVYGM 690
G+RVKV GW+ +R Q K ++FL + DG+ + D ++ L+ SSV V G
Sbjct: 149 GERVKVQGWIRSVRSQ-KKVLFLHVNDGSSLESLQVVAD--SSFDSRELAFWSSVEVQGQ 205
Query: 691 LKLTPKGKQAPGGHELSCDFWELIGLAPAGGADNLINEESDVDVQLNNRHMMIRGENMSK 870
+P KQ EL + E++G E ++ ++ R +
Sbjct: 206 RVKSPSKKQ---NVELKAEKIEVVGNCDIKAFPLKYKERHPLEYLRQYPYLRCRTNVLGS 262
Query: 871 ILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFKLD 1002
IL+ RS T F D G+ + P + EG LF+++
Sbjct: 263 ILRVRSEATAAVHSFFKDSGFVHIHTPVITSNDWEGAGELFQVE 306
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,439,757
Number of extensions: 933799
Number of successful extensions: 3259
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3235
Number of HSP's successfully gapped: 8
Length of query: 495
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 392
Effective length of database: 8,779,541
Effective search space: 3441580072
Effective search space used: 3441580072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002663
(1486 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 448 e-123
>Sscrofa_Chr01
|| Length = 315321322
Score = 448 bits (226), Expect = e-123
Identities = 226/226 (100%)
Strand = Plus / Plus
Query: 716 aggctccagggggccatgagctgagttgtgacttctgggaactgattggattggcccctg 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117503663 aggctccagggggccatgagctgagttgtgacttctgggaactgattggattggcccctg 117503722
Query: 776 ctggaggtgctgataacttgatcaatgaggagtctgatgttgacgtccagctcaacaaca 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117503723 ctggaggtgctgataacttgatcaatgaggagtctgatgttgacgtccagctcaacaaca 117503782
Query: 836 gacacatgatgatccggggagaaaacatgtccaaaatcctaaaagcacgttccgtgatca 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117503783 gacacatgatgatccggggagaaaacatgtccaaaatcctaaaagcacgttccgtgatca 117503842
Query: 896 ccaggtgctttagagagcacttcttcgatagggggtactacgaagt 941
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117503843 ccaggtgctttagagagcacttcttcgatagggggtactacgaagt 117503888
Score = 396 bits (200), Expect = e-107
Identities = 200/200 (100%)
Strand = Plus / Plus
Query: 940 gtcactcctccaacattagtgcaaacacaggtggaaggcggggccacactcttcaagctg 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117503978 gtcactcctccaacattagtgcaaacacaggtggaaggcggggccacactcttcaagctg 117504037
Query: 1000 gattattttggagaagaggcatacctgacacagtcctctcagctgtacctggagacctgc 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117504038 gattattttggagaagaggcatacctgacacagtcctctcagctgtacctggagacctgc 117504097
Query: 1060 attccagctctgggagatgttttttgtatcgcacagtcatacagggcagaacagtccaga 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117504098 attccagctctgggagatgttttttgtatcgcacagtcatacagggcagaacagtccaga 117504157
Query: 1120 acacgaaggcatctggctga 1139
||||||||||||||||||||
Sbjct: 117504158 acacgaaggcatctggctga 117504177
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1 gacttactgcgacgacttctgcactacgttacatgatgcaacatccgagttgaggaagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117493630 gacttactgcgacgacttctgcactacgttacatgatgcaacatccgagttgaggaagtc 117493689
Query: 61 gcggcggcacgttgcgggtggtaaggcggctgcttgttggaggtgatgtccttggacgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117493690 gcggcggcacgttgcgggtggtaaggcggctgcttgttggaggtgatgtccttggacgtg 117493749
Query: 121 accagggcaaccgcggggatggtgcttg 148
||||||||||||||||||||||||||||
Sbjct: 117493750 accagggcaaccgcggggatggtgcttg 117493777
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 1140 atacactcacgtggaagcagagtgccctttcctgacctttgaggagctcctgaaccgatt 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117504416 atacactcacgtggaagcagagtgccctttcctgacctttgaggagctcctgaaccgatt 117504475
Query: 1200 ggaggacttggtttgtgatgtggtagaaagagtcatgaaatcgtcagcagcaggcatagt 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117504476 ggaggacttggtttgtgatgtggtagaaagagtcatgaaatcgtcagcagcaggcatagt 117504535
Query: 1260 gcgagagctcaacccg 1275
||||||||||||||||
Sbjct: 117504536 gcgagagctcaacccg 117504551
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 630 gtgtcagtgttacaatggagtagtcttgtccactgagagtagtgttgcagtgtatggcat 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117502199 gtgtcagtgttacaatggagtagtcttgtccactgagagtagtgttgcagtgtatggcat 117502258
Query: 690 gctaaaactcaccccaaagggcaagcagg 718
|||||||||||||||||||||||||||||
Sbjct: 117502259 gctaaaactcaccccaaagggcaagcagg 117502287
Score = 168 bits (85), Expect = 6e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 148 gcagagctttatgtctcggaccgagagggaagtgatgctactggtgatggaaccaaggag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117494796 gcagagctttatgtctcggaccgagagggaagtgatgctactggtgatggaaccaaggag 117494855
Query: 208 aaaccttttaaaacaggtcttaagg 232
|||||||||||||||||||||||||
Sbjct: 117494856 aaaccttttaaaacaggtcttaagg 117494880
Score = 165 bits (83), Expect = 9e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 296 agaggtgggatgttatttctaaatcacagatgaagaacattagaaaaatgtggcacaggg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117497098 agaggtgggatgttatttctaaatcacagatgaagaacattagaaaaatgtggcacaggg 117497157
Query: 356 aacagatgaagagtgaatcccgg 378
|||||||||||||||||||||||
Sbjct: 117497158 aacagatgaagagtgaatcccgg 117497180
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 481 gtgaagatttgtgcattagaagggtatcgaggtcaaagagtgaaagtatttggctgggtc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117498338 gtgaagatttgtgcattagaagggtatcgaggtcaaagagtgaaagtatttggctgggtc 117498397
Query: 541 cacaggctgcgtaggcaagg 560
||||||||||||||||||||
Sbjct: 117498398 cacaggctgcgtaggcaagg 117498417
Score = 153 bits (77), Expect = 3e-34
Identities = 96/101 (95%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1387 gatatcccagaagctcctgagagactcatgacggataccat-aatgagccgattctgctg 1445
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 117508017 gatatcccagaagctcctgagagactcatgacggataccattaatgagccgatcctgctg 117508076
Query: 1446 tgtcggtttcccgtggagataagttctttctacatgcagcg 1486
|||||||||||||||||||| | |||||||||||||||||
Sbjct: 117508077 tgtcggtttcccgtggagatcaagtctttctacatgcagcg 117508117
Score = 145 bits (73), Expect = 8e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 558 aggaaagaatttaatgtttcttgtgttgcgagatggtacaggttatcttcagtgcgtctt 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117499904 aggaaagaatttaatgtttcttgtgttgcgagatggtacaggttatcttcagtgcgtctt 117499963
Query: 618 gtcagatgatctg 630
|||||||||||||
Sbjct: 117499964 gtcagatgatctg 117499976
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 229 aaggctttgatgacagctggaaaagaaccttttcctaccatttacgtagattcacaaaaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117496935 aaggctttgatgacagctggaaaagaaccttttcctaccatttacgtagattcacaaaaa 117496994
Query: 289 gaaaatgag 297
|||||||||
Sbjct: 117496995 gaaaatgag 117497003
Score = 123 bits (62), Expect = 3e-25
Identities = 91/98 (92%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 1292 aacggcctttcagaccgatgaactattcagatgctattgtgtggctaaaag-acacaata 1350
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 117505479 aacggcctttcagacggatgaactattcagatgctattgtgtggctaaaagaacacaata 117505538
Query: 1351 taaagaaagagaatgg-actttctaccaattgggagag 1387
|||||||||| |||| ||||||||| |||| ||||||
Sbjct: 117505539 taaagaaagaagatggaactttctacgaatttggagag 117505576
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 440 ttaccataaaaaatgatccaagtctcccagagccaaaatgtgt 482
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117497335 ttaccataaaaaatgatccaagtctcccagagccaaaatgtgt 117497377
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,965,362
Number of extensions: 274
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 13
Length of query: 1486
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1465
Effective length of database: 2,808,413,156
Effective search space: 4114325273540
Effective search space used: 4114325273540
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)