Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfam... 556 e-158
Alignment gi|NP_001092837.1| cytochrome P450, family 3, subfamily A, poly... 551 e-157
Alignment gi|NP_001069356.1| cytochrome P450, family 3, subfamily A, poly... 551 e-157
Alignment gi|NP_776956.2| cytochrome P450 3A28 [Bos taurus]. 538 e-153
Alignment gi|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A2... 438 e-123
Alignment gi|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus]. 213 3e-55
Alignment gi|NP_001039492.1| thromboxane-A synthase [Bos taurus]. 171 2e-42
Alignment gi|NP_001070278.1| cholesterol 24-hydroxylase [Bos taurus]. 92 1e-18
Alignment gi|NP_001071376.1| cytochrome P450, family 4, subfamily A, poly... 84 2e-16
Alignment gi|NP_001092460.1| cytochrome P450, family 4, subfamily A, poly... 81 2e-15
>ref|XP_002703190.1| PREDICTED: cytochrome P450, family 3, subfamily A, polypeptide 4-like
[Bos taurus].
Length = 503
Score = 556 bits (1432), Expect = e-158
Identities = 270/373 (72%), Positives = 308/373 (82%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLPYFGN+L YRKGV F
Sbjct: 1 MELIPSFSMETWVLLSISLVLLYLYGTYSHGLFKKLGVPGPRPLPYFGNVLSYRKGVCEF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D++CF++YGKMWG F+G+ P+L ITDPD+IKTVLVKECYSVFTNR+ FGPRG M++AVS+
Sbjct: 61 DEECFKKYGKMWGIFEGKHPLLVITDPDVIKTVLVKECYSVFTNRKVFGPRGIMKNAVSV 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKGK V MK++FGAYS
Sbjct: 121 AEDEQWKRIRTLLSPAFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGKSVNMKEVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSL NPQDPFVEN++KLL+ +VLNIT+
Sbjct: 181 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILNPFLLSVVLFPFLVPILDVLNITI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKS VNFFT+S+KR+KESRLKD QK RVD LQLMINSQNSKE D HK LS++EL+AQ +
Sbjct: 241 FPKSAVNFFTKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELIAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS+LS L+Y LATHPDVQQKLQEEIDATFPNK PPTYD LAQMEYLDMVV
Sbjct: 301 IFIFAGYETTSSTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 361 NETLRMFPIAIRL 373
>ref|NP_001092837.1| cytochrome P450, family 3, subfamily A, polypeptide 4 [Bos taurus].
Length = 503
Score = 551 bits (1421), Expect = e-157
Identities = 271/373 (72%), Positives = 309/373 (82%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LI FSTETW GTYS+GLFKKLG+PGPRPLPYFGNIL YRKGV F
Sbjct: 1 MELILSFSTETWVLLATGLVLLYLYGTYSYGLFKKLGVPGPRPLPYFGNILSYRKGVCEF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
+++CF++YGK+WG F+G+QP+L ITDPDMIKTVLVKECYSVFTNRR FGP G M++A+S+
Sbjct: 61 NEECFKKYGKIWGIFEGKQPLLVITDPDMIKTVLVKECYSVFTNRRVFGPSGVMKNAISV 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDE+WKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKG V +KDIFGAYS
Sbjct: 121 AEDEQWKRIRTLLSPTFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGTSVDIKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSL+NPQDPFVEN +KLL+ +VLNIT+
Sbjct: 181 MDVITSTSFGVNIDSLSNPQDPFVENVKKLLRFSILDPFLLAVVLFPFLVPILDVLNITI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKSVVNFFT+S+KR+KESRLKD QK RVD LQLMINSQNSKE D HK LS++EL+AQ +
Sbjct: 241 FPKSVVNFFTKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELIAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS+LS L+Y LATHPDVQQKLQEEIDATFPNK PPTYD LAQMEYLDMVV
Sbjct: 301 IFIFAGYETTSSTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 361 NETLRMFPIAIRL 373
>ref|NP_001069356.1| cytochrome P450, family 3, subfamily A, polypeptide 5 [Bos taurus].
Length = 503
Score = 551 bits (1420), Expect = e-157
Identities = 268/373 (71%), Positives = 305/373 (81%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLP FGN+L YRKGV F
Sbjct: 1 MELIPNFSVETWVLLAISLVLLYLYGTYSHGLFKKLGVPGPRPLPLFGNVLSYRKGVCEF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D++CF++YGKMWG F+G+ P+L ITDPDMIKTVLVKECYSVFTNRR FGP G M++AVS+
Sbjct: 61 DEECFKKYGKMWGIFEGKHPLLVITDPDMIKTVLVKECYSVFTNRRVFGPMGVMKNAVSV 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDE+WKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKG V MK++FGAYS
Sbjct: 121 AEDEQWKRIRTLLSPTFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGTSVDMKEVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSL NPQDPFVEN++KLL+ EVLNI++
Sbjct: 181 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILDPFLLSVVLFPFLIPIFEVLNISI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKS VNF T S+K++KESRLKDTQK RVD LQLMINSQNSKE D HK LS++EL+AQ +
Sbjct: 241 FPKSAVNFLTTSVKKIKESRLKDTQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIF GYETTS+SLS ++YELATHPDVQQKLQEEIDATFPNK PPTYD LAQMEYLDMVV
Sbjct: 301 IFIFGGYETTSTSLSFIIYELATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 361 NETLRMFPIAVRL 373
>ref|NP_776956.2| cytochrome P450 3A28 [Bos taurus].
Length = 507
Score = 538 bits (1386), Expect = e-153
Identities = 261/373 (69%), Positives = 299/373 (80%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP FS ETW GTYS+GLFKKLGIPGPRP+PYFG+ + Y KG+ F
Sbjct: 1 MELIPSFSMETWVLLATSLVLLYIYGTYSYGLFKKLGIPGPRPVPYFGSTMAYHKGIPEF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +CF++YGKMWGF++GRQP+LAITDPD+IKTVLVKECYSVFTNRR FGP G M+ A+SL
Sbjct: 61 DNQCFKKYGKMWGFYEGRQPMLAITDPDIIKTVLVKECYSVFTNRRIFGPMGIMKYAISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
A DE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKG PV MKD+FGAYS
Sbjct: 121 AWDEQWKRIRTLLSPAFTSGKLKEMFPIIGQYGDMLVRNLRKEAEKGNPVNMKDMFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT TAFGVN+DSLNNP DPFVE+S+ LL+ E+LNITL
Sbjct: 181 MDVITGTAFGVNIDSLNNPHDPFVEHSKNLLRFRPFDPFILSIILFPFLNPVFEILNITL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKS V+FFT+S+K++KESRL D Q +RVDLLQLMINSQNSKE+D HK LS+ ELVAQ
Sbjct: 241 FPKSTVDFFTKSVKKIKESRLTDKQMNRVDLLQLMINSQNSKEIDNHKALSDIELVAQST 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIF GYETTSS+LS ++YEL THP VQQK+QEEIDATFPNK PPTYD L QMEYLDMVV
Sbjct: 301 IFIFGGYETTSSTLSFIIYELTTHPHVQQKVQEEIDATFPNKAPPTYDALVQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 361 NETLRMFPIAGRL 373
>ref|XP_002698187.1| PREDICTED: similar to cytochrome P450 CYP3A24 [Bos taurus].
Length = 452
Score = 438 bits (1127), Expect = e-123
Identities = 230/373 (61%), Positives = 259/373 (69%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP FS ETW GTYSHGLFKKLG+PGPRPLPYFGN
Sbjct: 1 MELIPSFSMETWVLLSISLVLLYLYGTYSHGLFKKLGVPGPRPLPYFGN----------- 49
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
V + R+ FGPRG M++AVS+
Sbjct: 50 ----------------------------------------VLSYRKVFGPRGIMKNAVSV 69
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDE+WKRIRTLLSP FTSGKLKEMFPII YGD+LV NLRKEAEKGK V MK++FGAYS
Sbjct: 70 AEDEQWKRIRTLLSPAFTSGKLKEMFPIIGKYGDVLVRNLRKEAEKGKSVNMKEVFGAYS 129
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSL NPQDPFVEN++KLL+ EVLNIT+
Sbjct: 130 MDVITSTSFGVNIDSLGNPQDPFVENAKKLLRFDILNPFLLSVVLFPFLVPIFEVLNITM 189
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKS VNF +S+KR+KESRLKD QK RVD LQLMINSQNSKE D HK LS++EL+AQ V
Sbjct: 190 FPKSAVNFLAKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQSV 249
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTS++LS L+Y LATHPDVQQKLQEEID TFPNK PPTYD LAQMEYLDMVV
Sbjct: 250 IFIFAGYETTSNTLSFLLYILATHPDVQQKLQEEIDVTFPNKAPPTYDVLAQMEYLDMVV 309
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+T RL
Sbjct: 310 NETLRMFPITVRL 322
>ref|XP_595414.4| PREDICTED: hypothetical protein [Bos taurus].
Length = 264
Score = 213 bits (542), Expect = 3e-55
Identities = 105/134 (78%), Positives = 118/134 (88%)
Frame = +1
Query: 832 LFPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQG 1011
+FPKS VNF +S+KR+KESRLKD QK RVD LQLMINSQNSKE D HK LS++EL+AQ
Sbjct: 1 MFPKSAVNFLAKSVKRIKESRLKDNQKPRVDFLQLMINSQNSKETDNHKALSDQELMAQS 60
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
VIFIFAGYETTS++LS L+Y LATHPDVQQKLQEEID TFPNK PPTYD LAQMEYLDMV
Sbjct: 61 VIFIFAGYETTSNTLSFLLYILATHPDVQQKLQEEIDVTFPNKAPPTYDVLAQMEYLDMV 120
Query: 1192 VNESLRIFPVTPRL 1233
VNE+LR+FP+T RL
Sbjct: 121 VNETLRMFPITVRL 134
>ref|NP_001039492.1| thromboxane-A synthase [Bos taurus].
Length = 533
Score = 171 bits (432), Expect = 2e-42
Identities = 115/376 (30%), Positives = 192/376 (51%), Gaps = 34/376 (9%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLGI P+P P+ GN+ +R+G + +QYG + G++ GR + I++
Sbjct: 33 TSAFSRLEKLGIRHPKPSPFIGNLAFFRQGFWESHMELRKQYGPLSGYYLGRLMFIVISE 92
Query: 373 PDMIKTVLVKECYSVFTNRRSFG--PRGAMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKE 546
PDMI+ VLV++ +S FTNR + G P+ S + L D+ W+ +R++L+ F+ KL E
Sbjct: 93 PDMIEQVLVEK-FSNFTNRMATGLEPKPVADSVLFL-RDKRWEEVRSVLTVAFSPEKLSE 150
Query: 547 MFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFV 726
M P+IS D+L+++L + A+ G+ ++ + Y+ DV+ S AFG V+S P+ PFV
Sbjct: 151 MTPLISRACDVLLAHLERHAQSGEAFDIQRTYCCYTTDVVASVAFGTEVNSQEAPEHPFV 210
Query: 727 ENSRK---------LLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKR 879
E+ R+ LL + LN F K + N ++
Sbjct: 211 EHCRRFFASSIPKPLLVLLLSFPSIMVPLARILPNKNRDELN-GFFNKLIRNVIALRDQQ 269
Query: 880 MKESRLKDTQK--------------HRVDLLQLMINS--------QNSKEMDAHKGLSNE 993
E R +D + + D+++ + ++ + K LS +
Sbjct: 270 AAEERRRDFLQMVQDVRHSAATVGVEKFDIVRQVFSATKCPANPPRRHSPRPLSKPLSVD 329
Query: 994 ELVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ- 1170
E+V Q IF+ AGYE +++LS Y LAT+P+ Q+KL EE+D + P Y L +
Sbjct: 330 EVVGQAFIFLIAGYEIVTNTLSFATYLLATNPECQEKLLEEVDCFSKEHLAPEYCSLQEG 389
Query: 1171 MEYLDMVVNESLRIFP 1218
+ YLDMV+ E+LR++P
Sbjct: 390 LPYLDMVIKETLRMYP 405
>ref|NP_001070278.1| cholesterol 24-hydroxylase [Bos taurus].
Length = 501
Score = 91.7 bits (226), Expect = 1e-18
Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 16/347 (4%)
Frame = +1
Query: 226 IPGPRPLPYFGNILGYRKGVDHFDKKC-----------FQQYGKMWGFFDGRQPVLAITD 372
IPGP P P F +LG+ D+ C ++YG + + + +T
Sbjct: 34 IPGP-PRPSF--LLGHLPYFWKKDEVCGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTS 90
Query: 373 PDMIKTVLVKECYSVFTN-----RRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPTFTSGK 537
P+ +K L+ Y+ + + FG R + VS + E W + R ++ F+
Sbjct: 91 PESVKKFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRIMDLAFSRSS 150
Query: 538 LKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQD 717
L + + + LV L +A+ PV+M+D+ +MD++ AFG+ L Q
Sbjct: 151 LVGLMGTFNEKAEQLVEILEAQADGQTPVSMQDMLTCATMDILAKAAFGMETSMLLGAQK 210
Query: 718 PFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESRL 897
P + +L+ E F + V + ++R +E+ L
Sbjct: 211 PLSRKVKLILEGISASRNTLAKFMPGKWKQLRETRESVRFLRQVGKEW---VQRRREA-L 266
Query: 898 KDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLVYEL 1077
+ + D+L ++ ++ + D E L+ V F AG+ET+++ L+ V EL
Sbjct: 267 QRGEDVPADILTQILKAEEGAQDD-------EILLDNFVTFFIAGHETSANHLAFTVMEL 319
Query: 1078 ATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFP 1218
+ P++ +LQ E+D +K + L +++YL V+ ESLR++P
Sbjct: 320 SRQPEILARLQAEVDEVIGSKRHLDCEDLGRLQYLSQVLKESLRLYP 366
>ref|NP_001071376.1| cytochrome P450, family 4, subfamily A, polypeptide 11 [Bos taurus].
Length = 514
Score = 84.3 bits (207), Expect = 2e-16
Identities = 81/339 (23%), Positives = 148/339 (43%), Gaps = 22/339 (6%)
Frame = +1
Query: 277 KGVDHFDKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAM 456
K V+ + + C + MWG + +L + DPD +K VL + R P +
Sbjct: 77 KRVEKYPRACVRW---MWG----TRALLLVYDPDYMKMVLGRSDPKAQIIHRFVKPW--I 127
Query: 457 RSAVSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKD 636
+ + L E + W + R +L+P F + I+ Y ++ ++R +K + + +D
Sbjct: 128 GTGLLLLEGQTWFQHRRMLTPAFH-------YDILKPYVGIMADSVRVMLDKWEELVSQD 180
Query: 637 ----IFGAYSM---DVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXX 795
IFG S+ D I AF + NS+ ++
Sbjct: 181 SHLEIFGHVSLMTLDTIMKCAFSQQGSVQTD------RNSQSYIQAIKDVSHLIISRLRN 234
Query: 796 XXXXXXEVLNITLFPKSVVNFFT--------------RSIKRMKESRLKDTQKHR-VDLL 930
+ +T P+ N R ++ KE L+ + R +D L
Sbjct: 235 AFHQNDLIYRLT--PEGHWNHRACQLAHQHTDAVIKERKVRLQKEGELEKVRSRRHLDFL 292
Query: 931 QLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQ 1110
+++ ++ M+ LS+E+L A+ F+F G++TT+S +S ++Y LA+HP+ QQ+ +
Sbjct: 293 DILLFAR----MENGSSLSDEDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCR 348
Query: 1111 EEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFPVTP 1227
EEI + + T+D L QM Y M + E++R++P P
Sbjct: 349 EEIQSLLADGASITWDHLDQMPYTTMCIKEAMRLYPPVP 387
>ref|NP_001092460.1| cytochrome P450, family 4, subfamily A, polypeptide 22 [Bos taurus].
Length = 515
Score = 81.3 bits (199), Expect = 2e-15
Identities = 77/330 (23%), Positives = 144/330 (43%), Gaps = 15/330 (4%)
Frame = +1
Query: 283 VDHFDKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRS 462
V+ + K C + +WG + ++ + DPD +K L + + P + +
Sbjct: 79 VEKYPKACVRW---LWG----TKALVLVYDPDYMKVFLGRSDPKPHRTYKYLAPW--IGT 129
Query: 463 AVSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKD-- 636
+ L E ++W + R +L+P F + I+ Y ++ ++R +K + + +D
Sbjct: 130 GLLLLEGQKWFQHRRMLTPAFR-------YDILKAYVGIMADSVRVMLDKWEELVSQDSH 182
Query: 637 --IFGAYSM---DVITSTAFGVNVD-SLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXX 798
IFG S+ D I AF ++ +++ R L
Sbjct: 183 LEIFGHVSLMTLDTIMKCAFSHQGSVQMDRSSQSYIQAIRDLSHLIVSRLRNAFHQNDLI 242
Query: 799 XXXXXE------VLNITLFPKSVVNFFTRSIKRMKESRLKDTQKHR-VDLLQLMINSQNS 957
E +T V R KE L+ + R +D L +++ ++
Sbjct: 243 YRLTPEGRWNHRACQLTHQHTDAV-IKERKAHLQKEGELEKVRSRRHLDFLDILLLAR-- 299
Query: 958 KEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPN 1137
M+ LS+E+L A+ F+F G++TT+S +S ++Y LA+HP+ QQ+ +EEI + +
Sbjct: 300 --MENGSSLSDEDLRAEVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQSLLGD 357
Query: 1138 KVPPTYDGLAQMEYLDMVVNESLRIFPVTP 1227
T+D L QM Y M + E++R++P P
Sbjct: 358 GASITWDHLDQMRYTTMCIKEAMRLYPPVP 387
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,877,852
Number of extensions: 1300546
Number of successful extensions: 3592
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 3559
Number of HSP's successfully gapped: 61
Length of query: 411
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,207,134
Effective search space: 4347383004
Effective search space used: 4347383004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536868.2| PREDICTED: hypothetical protein XP_536868 [Cani... 558 e-159
Alignment gi|XP_546969.2| PREDICTED: similar to cytochrome P450, subfamil... 557 e-159
Alignment gi|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris]. 549 e-156
Alignment gi|NP_001003338.1| cytochrome P450 3A26 [Canis lupus familiaris]. 538 e-153
Alignment gi|XP_851720.1| PREDICTED: cytochrome P-450 3A12, partial [Cani... 396 e-110
Alignment gi|XP_539887.2| PREDICTED: similar to Thromboxane-A synthase (T... 163 3e-40
Alignment gi|XP_537552.2| PREDICTED: similar to Cytochrome p450 46A1 (Cho... 95 2e-19
Alignment gi|XP_849364.1| PREDICTED: similar to cytochrome P450, family 4... 82 8e-16
Alignment gi|NP_001041490.1| cytochrome P450 4A37 [Canis lupus familiaris]. 81 2e-15
Alignment gi|NP_001041499.1| cytochrome P450, family 4, subfamily A, poly... 79 9e-15
>ref|XP_536868.2| PREDICTED: hypothetical protein XP_536868 [Canis familiaris].
Length = 503
Score = 558 bits (1439), Expect = e-159
Identities = 275/373 (73%), Positives = 305/373 (81%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FS ETW GTY+HG+FKKLGIPGP PLP+ G LGYRKG F
Sbjct: 1 MDLIPSFSMETWLLLATSLVLLYLYGTYTHGVFKKLGIPGPTPLPFVGTALGYRKGFSVF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D+ CF++YG+MWGF+DGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGP G M+SA+SL
Sbjct: 61 DENCFRKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPVGFMKSAISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKGK + +KDIFGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTSGKLKEMFPIIGQYGDVLVRNLRKEAEKGKSINLKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSLNNPQDPFVEN +KLLK EVLNI L
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENIKKLLKFDFLDPFFFSILLFPFLTPVFEVLNIWL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKSV +FFT+S+KRMKE+RLKD QKHRVD LQLMINSQNSKE D HK LS+ ELVAQ +
Sbjct: 241 FPKSVTDFFTKSVKRMKENRLKDKQKHRVDFLQLMINSQNSKETDTHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTS+SLS L+YELATHPDVQQKLQEEIDATFPNK PTYD L QMEYLDMV+
Sbjct: 301 IFIFAGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVL 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR++P+ RL
Sbjct: 361 NETLRLYPIAGRL 373
>ref|XP_546969.2| PREDICTED: similar to cytochrome P450, subfamily IIIA, polypeptide 4
[Canis familiaris].
Length = 503
Score = 557 bits (1436), Expect = e-159
Identities = 271/373 (72%), Positives = 308/373 (82%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FSTETW GTY+HGLFKKLGIPGP PLP+ G +LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLATSLVLFYLYGTYTHGLFKKLGIPGPTPLPFLGTVLGYRNGFCDF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D+KCF++YG+MWGF+DGRQPVLAI DPDMIKTVLVKECYSVFTNRRSFGP G M+SA+++
Sbjct: 61 DEKCFRKYGRMWGFYDGRQPVLAIMDPDMIKTVLVKECYSVFTNRRSFGPVGFMKSAITV 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKRIRTLLSPTFTSGKLKEMFPII YGD+LV NLRKEAEKGK +++KDIFGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTSGKLKEMFPIIGQYGDMLVRNLRKEAEKGKAISLKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSLNNPQDPFVEN++KLLK E+LNI L
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENAKKLLKFDFPDPFLLSIILFPFLTPLYEMLNIWL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK + +FFT+S+KRMKESRLKD QKHRVD LQLMINSQNSKEM+ HK LS+ ELVAQ +
Sbjct: 241 FPKKITDFFTKSVKRMKESRLKDKQKHRVDFLQLMINSQNSKEMNTHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IF+ AGYETTS+SL LL+YELATHPDVQQKLQ+EIDATFPNK PTYD L QMEYLDMV+
Sbjct: 301 IFVVAGYETTSTSLCLLMYELATHPDVQQKLQKEIDATFPNKAAPTYDTLVQMEYLDMVL 360
Query: 1195 NESLRIFPVTPRL 1233
NESLR++P+T RL
Sbjct: 361 NESLRLYPITGRL 373
>ref|NP_001003340.1| cytochrome P450 3A12 [Canis lupus familiaris].
Length = 503
Score = 549 bits (1415), Expect = e-156
Identities = 267/373 (71%), Positives = 304/373 (81%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FSTETW GTY+HG+F+KLGIPGP PLP+ G LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLAISLVLLYLYGTYTHGIFRKLGIPGPTPLPFVGTALGYRNGFYVF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D KCF +YG+MWGF+DGRQPVLAITDPDMIKTVLVKECYSVFTNRR+ GP G M+SA+SL
Sbjct: 61 DMKCFSKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRTLGPVGFMKSAISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKR+RTLLSPTFT+GKLKEMFPII YGD+LV+NLRKEAEKGK + +KD+FGAYS
Sbjct: 121 SEDEEWKRMRTLLSPTFTTGKLKEMFPIIGQYGDVLVNNLRKEAEKGKAINLKDVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSLN+PQDPFVEN++KLLK E+LNI L
Sbjct: 181 MDVITSTSFGVNIDSLNHPQDPFVENTKKLLKFDFLDPFFFSILLFPFLTPVFEILNIWL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK V +FF +S++RMKESRLKD QKHRVD LQLMINSQNSKEMD HK LS+ ELVAQ +
Sbjct: 241 FPKKVTDFFRKSVERMKESRLKDKQKHRVDFLQLMINSQNSKEMDTHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTS+SLS L+YELATHPDVQQKLQEEIDATFPNK PTYD L QMEYLDMV+
Sbjct: 301 IFIFAGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVL 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR++P+ RL
Sbjct: 361 NETLRLYPIAGRL 373
>ref|NP_001003338.1| cytochrome P450 3A26 [Canis lupus familiaris].
Length = 503
Score = 538 bits (1386), Expect = e-153
Identities = 263/373 (70%), Positives = 299/373 (80%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FSTETW GTY+HG+F+KLGIPGP PLP+ G LGYR G F
Sbjct: 1 MDLIPSFSTETWLLLAISLVLLYLYGTYTHGIFRKLGIPGPTPLPFVGTALGYRNGFYVF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D KCF +YG+MWGF+DGRQPVLAITDPDMIKTVLVKECYSVFTNRR+ GP G M+SA+SL
Sbjct: 61 DMKCFSKYGRMWGFYDGRQPVLAITDPDMIKTVLVKECYSVFTNRRTLGPVGFMKSAISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKRIRTLLSPTFT+GKLKEMFPII YGD+LV+NLRKEAEKGK + +KD+FGAYS
Sbjct: 121 SEDEEWKRIRTLLSPTFTTGKLKEMFPIIGQYGDVLVNNLRKEAEKGKAINLKDVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITS +FGVN+DSLN+PQDPFVEN++ LLK E+LNI L
Sbjct: 181 MDVITSISFGVNIDSLNHPQDPFVENTKNLLKFDFLDPFLFSILLFPFLTPVFEILNIWL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK V +FF +S++RMKESRLKD QKHRVD LQLMINSQNSKEMD HK LS+ ELVAQ +
Sbjct: 241 FPKKVTDFFRKSVERMKESRLKDKQKHRVDFLQLMINSQNSKEMDTHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
+FIFAGYETTSS LS L+YELATH DVQQKLQEEIDATFPNK PTY+ L QMEYLDMV+
Sbjct: 301 VFIFAGYETTSSCLSFLMYELATHRDVQQKLQEEIDATFPNKAAPTYEALVQMEYLDMVL 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR++ V RL
Sbjct: 361 NETLRLYSVAGRL 373
>ref|XP_851720.1| PREDICTED: cytochrome P-450 3A12, partial [Canis familiaris].
Length = 358
Score = 396 bits (1018), Expect = e-110
Identities = 197/278 (70%), Positives = 228/278 (82%)
Frame = +1
Query: 400 KECYSVFTNRRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDL 579
K ++ FT +RS GP G M+SA+SL+EDEEWKRIRTLLSPTFT+GKLKEMF II YGD+
Sbjct: 6 KFSHTTFTPKRSLGPVGFMKSAISLSEDEEWKRIRTLLSPTFTTGKLKEMFSIIGQYGDV 65
Query: 580 LVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXX 759
LV+NLRKEAEKGK + +KD+FGAYSMDVITST+FGVN+DSLN+PQDPFVEN++KLLK
Sbjct: 66 LVNNLRKEAEKGKAINLKDVFGAYSMDVITSTSFGVNIDSLNHPQDPFVENTKKLLKFDF 125
Query: 760 XXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLM 939
E+LNI LFPK V +FF +S++RMKESRLKD QKHRVD LQLM
Sbjct: 126 LDPFFFSILLFPFLTPVFEILNIWLFPKKVTDFFRKSVERMKESRLKDKQKHRVDFLQLM 185
Query: 940 INSQNSKEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEI 1119
INSQNSKEMD HK LS+ ELVAQ +IFIFAGYETTS+SLS L+YELATHPDVQQKLQEEI
Sbjct: 186 INSQNSKEMDTHKALSDLELVAQSIIFIFAGYETTSTSLSFLMYELATHPDVQQKLQEEI 245
Query: 1120 DATFPNKVPPTYDGLAQMEYLDMVVNESLRIFPVTPRL 1233
DATFPNK PTYD L QMEYLDMV+NE+LR++P+ RL
Sbjct: 246 DATFPNKALPTYDALVQMEYLDMVLNETLRLYPIAGRL 283
>ref|XP_539887.2| PREDICTED: similar to Thromboxane-A synthase (TXA synthase) (TXS)
[Canis familiaris].
Length = 533
Score = 163 bits (413), Expect = 3e-40
Identities = 112/374 (29%), Positives = 186/374 (49%), Gaps = 32/374 (8%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLGI P+P P+ GN+ + +G + + YG + G++ GR+ + I++
Sbjct: 33 TAAFSRLEKLGIRHPKPSPFIGNLPFFCQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 92
Query: 373 PDMIKTVLVKECYSVFTNRRSFGPRG-AMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEM 549
PDMIK VLV+ ++ FTNR G + +V D+ W+ +R++L+ F+ KL EM
Sbjct: 93 PDMIKQVLVENFHN-FTNRMVSGLESKPVMDSVLFLRDKRWEEVRSVLTSAFSPEKLNEM 151
Query: 550 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVE 729
P+IS DLL+++L+ AE G ++ + Y+ DV+ S AFG VDS P DPFV+
Sbjct: 152 TPLISQACDLLLAHLKHYAESGDAFDIQRCYSCYTTDVVASVAFGTQVDSRRAPGDPFVK 211
Query: 730 NSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDT 906
+ R+ + + FF + I+ + R +
Sbjct: 212 HCRRFFAYSIPRPILVLILSFPSIMVPLARILPNKNRDELNGFFNKLIRNVIALRDQQAA 271
Query: 907 QKHRVDLLQLMINSQN---SKEMDA--------------------------HKGLSNEEL 999
++ R D LQL++++++ S +D+ + L+ +E+
Sbjct: 272 EERRRDFLQLILDARHLATSLGVDSFDMVRQVFSSTDCTVGPSRPHQPRHLSQPLTLDEI 331
Query: 1000 VAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-ME 1176
V Q IF+ AGYE +++LS Y LAT+PD Q+KL E+D+ Y L + +
Sbjct: 332 VGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLAEVDSFKEKYTALDYCSLQEGLP 391
Query: 1177 YLDMVVNESLRIFP 1218
YLDMV+ E+LRI+P
Sbjct: 392 YLDMVIAETLRIYP 405
>ref|XP_537552.2| PREDICTED: similar to Cytochrome p450 46A1 (Cholesterol
24-hydroxylase) [Canis familiaris].
Length = 477
Score = 94.7 bits (234), Expect = 2e-19
Identities = 70/290 (24%), Positives = 130/290 (44%), Gaps = 5/290 (1%)
Frame = +1
Query: 364 ITDPDMIKTVLVKECYSVFTN-----RRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPTFT 528
+T P+ +K L+ Y+ + + FG R + VS + E W + R ++ F+
Sbjct: 65 VTSPESVKKFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRVMDLAFS 124
Query: 529 SGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNN 708
L + + + LV L +A+ PV+M+D+ +MD++ AFG+ L
Sbjct: 125 RSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTCTTMDILAKAAFGMETGMLLG 184
Query: 709 PQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKE 888
Q P + +L+ E+ F + V + ++R +E
Sbjct: 185 AQKPLSRKVKLILEGITASRNTLAKFMPGKWKQLREIRESIRFLRQVGKDW---VQRRRE 241
Query: 889 SRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLV 1068
+ LK + D+L ++ ++ + D E L+ V F AG+ET+++ L+ V
Sbjct: 242 A-LKRGEDVPADILTQILKAEEGAQDD-------EILLDNFVTFFIAGHETSANHLAFTV 293
Query: 1069 YELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFP 1218
EL+ P++ +LQ E+D +K D L +++YL V+ ESLR++P
Sbjct: 294 MELSRQPEILARLQAEVDEVIGSKRHLDCDDLGRLQYLSQVLKESLRLYP 343
>ref|XP_849364.1| PREDICTED: similar to cytochrome P450, family 4, subfamily v,
polypeptide 2 [Canis familiaris].
Length = 575
Score = 82.4 bits (202), Expect = 8e-16
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 19/266 (7%)
Frame = +1
Query: 487 EWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAY----- 651
+W+ R +L+PTF L++ +++ + ++LV+ L K + + F +
Sbjct: 192 KWRSRRKMLTPTFHFTILEDFLDVMNEHANILVNKLEKHVNQ-------EAFNCFFYITL 244
Query: 652 -SMDVITSTAFGVNVDSLNNPQDPFV-------ENSRKLLKXXXXXXXXXXXXXXXXXXX 807
++D+I TA G N+ + NN +V + + +K
Sbjct: 245 CALDIICETAMGKNIGAQNNEDSEYVRAIYRMSDTIHRRMKMPWLWLDFLFLMFKEGREH 304
Query: 808 XXEVLNITLFPKSVVNFFTRSIKRMKESRLKD-----TQKHRVDLLQLMINSQNSKEMDA 972
+ + F +V+ +KR +E D ++ R L L++N + D
Sbjct: 305 KRNLEILHNFTNNVITERASELKRDEEHGSADKDCSPSKNKRRAFLDLLLNVTD----DE 360
Query: 973 HKGLSNEELVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATF-PNKVPP 1149
L +E++ + F+F G++TT+++++ +Y L ++P+VQ+++ E++ F + P
Sbjct: 361 GNKLRHEDVREEVDTFMFEGHDTTAAAINWSLYLLGSYPEVQKQVDSELEDVFGKSDRPA 420
Query: 1150 TYDGLAQMEYLDMVVNESLRIFPVTP 1227
T + L +++YL+ V+ ESLR+FP P
Sbjct: 421 TLEDLKKLKYLECVIKESLRLFPSVP 446
>ref|NP_001041490.1| cytochrome P450 4A37 [Canis lupus familiaris].
Length = 510
Score = 80.9 bits (198), Expect = 2e-15
Identities = 70/310 (22%), Positives = 139/310 (44%), Gaps = 15/310 (4%)
Frame = +1
Query: 343 GRQPVLAITDPDMIKTVLVKE------CYSVFTNRRSFGPRGAMRSAVSLAEDEEWKRIR 504
G + L + DPD +K +L + Y+ T +G + L E W + R
Sbjct: 92 GSRVSLVVYDPDYMKMILGRSDPKAGGSYTFITPWIGYG--------LLLLHGEAWFQHR 143
Query: 505 TLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFG 684
+L+P F LK +++ +++ + + + + + ++D I AF
Sbjct: 144 RMLTPAFHYDILKPYVRLMADSVQVMLDKWEELLTQNSHLEIFEHVSLMTLDTIMKCAFS 203
Query: 685 V--NVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNF 858
N + N Q +++ R + E + + +
Sbjct: 204 YQGNHQADRNSQ-AYIQAIRDMNNLVFARVRNVFYQKDIFYGLTSEGRR-NHKARQIAHQ 261
Query: 859 FTRSIKRMKESRLKDT-------QKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVI 1017
T + ++++++L+D K +D L +++ ++ M+ KGLS+++L A+
Sbjct: 262 HTDRVIKLRKAQLQDEGELEKVRNKRHLDFLDILLFAK----MENGKGLSDKDLRAEVDT 317
Query: 1018 FIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVN 1197
F+F G++TT+S +S ++Y LATHP+ QQ+ +EEI + + T++ L QM Y M +
Sbjct: 318 FMFEGHDTTASGISWILYALATHPEHQQRCREEIQSLLGDGASITWEHLDQMPYTTMCIK 377
Query: 1198 ESLRIFPVTP 1227
E+LR++P P
Sbjct: 378 EALRLYPPVP 387
>ref|NP_001041499.1| cytochrome P450, family 4, subfamily A, polypeptide 11 [Canis lupus
familiaris].
Length = 510
Score = 79.0 bits (193), Expect = 9e-15
Identities = 67/308 (21%), Positives = 138/308 (44%), Gaps = 13/308 (4%)
Frame = +1
Query: 343 GRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPT 522
G + + I DPD +K +L + + + P + + L E W + R +L+P
Sbjct: 92 GTEAEIMIYDPDYMKLILGRSDPKPDGSYKLMAPW--IGYGLLLLNGETWSQHRRMLTPA 149
Query: 523 FTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSL 702
F LK +++ +++ + + + + D ++D I AF
Sbjct: 150 FHYDILKPYVRLMADSVQVMLDKWEELLSQNSHLEIFDHVSLMTLDTIMKCAFSYQG--- 206
Query: 703 NNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPK------SVVNFFT 864
N+ D NS+ ++ +T + + + T
Sbjct: 207 NHQAD---RNSQAYIQAIRDLNNLVFARMRNVFYQKDIFYGLTSEGRRNHKACQLAHQHT 263
Query: 865 RSIKRMKESRLKDT-------QKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFI 1023
+ ++++++L+D K +D L +++ ++ ++ +GLS+++L A+ F+
Sbjct: 264 DRVIKLRKAQLQDKGELEKVRNKRHLDFLDILLFAK----VENGRGLSDKDLRAEVDTFM 319
Query: 1024 FAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNES 1203
F G++TT+S +S ++Y LATHP+ QQ+ +EEI + + T++ L QM Y M + E+
Sbjct: 320 FEGHDTTASGISWILYALATHPEHQQRCREEIQSLLGDGASITWEHLDQMPYTTMCIKEA 379
Query: 1204 LRIFPVTP 1227
LR++P P
Sbjct: 380 LRLYPPVP 387
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,102,784
Number of extensions: 1347574
Number of successful extensions: 3597
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 34
Length of query: 411
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 306
Effective length of database: 15,374,224
Effective search space: 4704512544
Effective search space used: 4704512544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens]. 532 e-151
Alignment gi|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens]. 528 e-150
Alignment gi|NP_000768.1| cytochrome P450 3A5 isoform 1 [Homo sapiens]. 518 e-147
Alignment gi|NP_000756.2| cytochrome P450 3A7 [Homo sapiens]. 509 e-144
Alignment gi|NP_073731.1| cytochrome P450 3A43 isoform 1 [Homo sapiens]. 473 e-133
Alignment gi|NP_476437.1| cytochrome P450 3A43 isoform 3 [Homo sapiens]. 473 e-133
Alignment gi|NP_476436.1| cytochrome P450 3A43 isoform 2 [Homo sapiens]. 473 e-133
Alignment gi|NP_001124438.1| thromboxane-A synthase isoform 1 [Homo sapie... 169 4e-42
Alignment gi|NP_112246.2| thromboxane-A synthase isoform 2 [Homo sapiens]. 169 4e-42
Alignment gi|NP_001052.2| thromboxane-A synthase isoform 1 [Homo sapiens]. 169 4e-42
>ref|NP_059488.2| cytochrome P450 3A4 isoform 1 [Homo sapiens].
Length = 503
Score = 532 bits (1371), Expect = e-151
Identities = 260/373 (69%), Positives = 300/373 (80%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M LIP + ETW GT+SHGLFKKLGIPGP PLP+ GNIL Y KG F
Sbjct: 1 MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C ++YGK+WGF+DG+QPVLAITDPDMIKTVLVKECYSVFTNRR FGP G M+SA+S+
Sbjct: 61 DMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKR+R+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+KD+FGAYS
Sbjct: 121 AEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSLNNPQDPFVEN++KLL+ EVLNI +
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENTKKLLRFDFLDPFFLSITVFPFLIPILEVLNICV 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ V NF +S+KRMKESRL+DTQKHRVD LQLMI+SQNSKE ++HK LS+ ELVAQ +
Sbjct: 241 FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS LS ++YELATHPDVQQKLQEEIDA PNK PPTYD + QMEYLDMVV
Sbjct: 301 IFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 361 NETLRLFPIAMRL 373
>ref|NP_001189784.1| cytochrome P450 3A4 isoform 2 [Homo sapiens].
Length = 502
Score = 528 bits (1360), Expect = e-150
Identities = 260/373 (69%), Positives = 300/373 (80%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M LIP + ETW GT+SHGLFKKLGIPGP PLP+ GNIL Y KG F
Sbjct: 1 MALIPDLAMETWLLLAVSLVLLYLYGTHSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C ++YGK+WGF+DG+QPVLAITDPDMIKTVLVKECYSVFTNRR FGP G M+SA+S+
Sbjct: 61 DMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKR+R+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+KD+FGAYS
Sbjct: 121 AEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVN+DSLNNPQDPFVEN++KLL+ EVLNI +
Sbjct: 181 MDVITSTSFGVNIDSLNNPQDPFVENTKKLLR-FDFLDPFFLSIIFPFLIPILEVLNICV 239
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ V NF +S+KRMKESRL+DTQKHRVD LQLMI+SQNSKE ++HK LS+ ELVAQ +
Sbjct: 240 FPREVTNFLRKSVKRMKESRLEDTQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSI 299
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS LS ++YELATHPDVQQKLQEEIDA PNK PPTYD + QMEYLDMVV
Sbjct: 300 IFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVV 359
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FP+ RL
Sbjct: 360 NETLRLFPIAMRL 372
>ref|NP_000768.1| cytochrome P450 3A5 isoform 1 [Homo sapiens].
Length = 502
Score = 518 bits (1335), Expect = e-147
Identities = 251/373 (67%), Positives = 296/373 (79%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP + ETW GT +HGLFK+LGIPGP PLP GN+L YR+G+ F
Sbjct: 1 MDLIPNLAVETWLLLAVSLVLLYLYGTRTHGLFKRLGIPGPTPLPLLGNVLSYRQGLWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGKMWG ++G+ PVLAITDPD+I+TVLVKECYSVFTNRRS GP G M+SA+SL
Sbjct: 61 DTECYKKYGKMWGTYEGQLPVLAITDPDVIRTVLVKECYSVFTNRRSLGPVGFMKSAISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIR+LLSPTFTSGKLKEMFPII+ YGD+LV NLR+EAEKGKPVT+KDIFGAYS
Sbjct: 121 AEDEEWKRIRSLLSPTFTSGKLKEMFPIIAQYGDVLVRNLRREAEKGKPVTLKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T+FGVN+DSLNNPQDPFVE+++K LK E LN++L
Sbjct: 181 MDVITGTSFGVNIDSLNNPQDPFVESTKKFLKFGFLDPLFLSIILFPFLTPVFEALNVSL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK +NF ++S+ RMK+SRL D QKHR+D LQLMI+SQNSKE ++HK LS+ EL AQ +
Sbjct: 241 FPKDTINFLSKSVNRMKKSRLNDKQKHRLDFLQLMIDSQNSKETESHKALSDLELAAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS LS +YELATHPDVQQKLQ+EIDA PNK PPTYD + QMEYLDMVV
Sbjct: 301 IFIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FPV RL
Sbjct: 361 NETLRLFPVAIRL 373
>ref|NP_000756.2| cytochrome P450 3A7 [Homo sapiens].
Length = 503
Score = 509 bits (1310), Expect = e-144
Identities = 245/373 (65%), Positives = 296/373 (79%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP + ETW GT +HGLFKKLGIPGP PLP+ GN L +RKG F
Sbjct: 1 MDLIPNLAVETWLLLAVSLILLYLYGTRTHGLFKKLGIPGPTPLPFLGNALSFRKGYWTF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++Y K+WG +D +QP+LAITDPDMIKTVLVKECYSVFTNRR FGP G M++A+S+
Sbjct: 61 DMECYKKYRKVWGIYDCQQPMLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKNAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIR+LLSPTFTSGKLKEM PII+ YGD+LV NLR+EAE GKPVT+K +FGAYS
Sbjct: 121 AEDEEWKRIRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKHVFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGV++DSLNNPQDPFVEN++KLL+ E LNIT+
Sbjct: 181 MDVITSTSFGVSIDSLNNPQDPFVENTKKLLRFNPLDPFVLSIKVFPFLTPILEALNITV 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ V++F T+S+K++KE RLK+TQKHRVD LQLMI+SQNSK+ + HK LS+ EL+AQ +
Sbjct: 241 FPRKVISFLTKSVKQIKEGRLKETQKHRVDFLQLMIDSQNSKDSETHKALSDLELMAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS LS ++YELATHPDVQQK+Q+EID PNK PPTYD + Q+EYLDMVV
Sbjct: 301 IFIFAGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FPV RL
Sbjct: 361 NETLRLFPVAMRL 373
>ref|NP_073731.1| cytochrome P450 3A43 isoform 1 [Homo sapiens].
Length = 504
Score = 473 bits (1216), Expect = e-133
Identities = 234/373 (62%), Positives = 277/373 (74%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D++C ++YG+MWG ++G+QP+L I DPDMIKTVLVKECYSVFTN+ GP G ++SA+S
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T FGVN+DSLNNPQDPF++N +KLLK E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK V +F SI+RMKESRLKD QKHRVD Q MI+SQNSKE +HK LS+ ELVAQ +
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFFQQMIDSQNSKETKSHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
I IFA Y+TTS++L ++YELATHPDVQQKLQEEIDA PNK P TYD L QMEYLDMVV
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FPV R+
Sbjct: 361 NETLRLFPVVSRV 373
>ref|NP_476437.1| cytochrome P450 3A43 isoform 3 [Homo sapiens].
Length = 420
Score = 473 bits (1216), Expect = e-133
Identities = 234/373 (62%), Positives = 277/373 (74%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D++C ++YG+MWG ++G+QP+L I DPDMIKTVLVKECYSVFTN+ GP G ++SA+S
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T FGVN+DSLNNPQDPF++N +KLLK E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK V +F SI+RMKESRLKD QKHRVD Q MI+SQNSKE +HK LS+ ELVAQ +
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFFQQMIDSQNSKETKSHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
I IFA Y+TTS++L ++YELATHPDVQQKLQEEIDA PNK P TYD L QMEYLDMVV
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FPV R+
Sbjct: 361 NETLRLFPVVSRV 373
>ref|NP_476436.1| cytochrome P450 3A43 isoform 2 [Homo sapiens].
Length = 503
Score = 473 bits (1216), Expect = e-133
Identities = 234/373 (62%), Positives = 277/373 (74%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP F+ ETW GT+SH LFKKLGIPGP PLP+ G IL Y +G+ +F
Sbjct: 1 MDLIPNFAMETWVLVATSLVLLYIYGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D++C ++YG+MWG ++G+QP+L I DPDMIKTVLVKECYSVFTN+ GP G ++SA+S
Sbjct: 61 DRECNEKYGEMWGLYEGQQPMLVIMDPDMIKTVLVKECYSVFTNQMPLGPMGFLKSALSF 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSP FTS K KEM PIIS GD+LV +LR+EAE K + +KD FGAY+
Sbjct: 121 AEDEEWKRIRTLLSPAFTSVKFKEMVPIISQCGDMLVRSLRQEAENSKSINLKDFFGAYT 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T FGVN+DSLNNPQDPF++N +KLLK E LNI L
Sbjct: 181 MDVITGTLFGVNLDSLNNPQDPFLKNMKKLLKLDFLDPFLLLISLFPFLTPVFEALNIGL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPK V +F SI+RMKESRLKD QKHRVD Q MI+SQNSKE +HK LS+ ELVAQ +
Sbjct: 241 FPKDVTHFLKNSIERMKESRLKDKQKHRVDFFQQMIDSQNSKETKSHKALSDLELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
I IFA Y+TTS++L ++YELATHPDVQQKLQEEIDA PNK P TYD L QMEYLDMVV
Sbjct: 301 IIIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR+FPV R+
Sbjct: 361 NETLRLFPVVSRV 373
>ref|NP_001124438.1| thromboxane-A synthase isoform 1 [Homo sapiens].
Length = 534
Score = 169 bits (429), Expect = 4e-42
Identities = 111/374 (29%), Positives = 191/374 (51%), Gaps = 32/374 (8%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLG+ P+P P+ GN+ +R+G + + YG + G++ GR+ + I++
Sbjct: 34 TSAFSRLEKLGLRHPKPSPFIGNLTFFRQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 93
Query: 373 PDMIKTVLVKECYSVFTNRRSFGPR-GAMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEM 549
PDMIK VLV E +S FTNR + G ++ +V D+ W+ +R L F+ KL EM
Sbjct: 94 PDMIKQVLV-ENFSNFTNRMASGLEFKSVADSVLFLRDKRWEEVRGALMSAFSPEKLNEM 152
Query: 550 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVE 729
P+IS DLL+++L++ AE G ++ + Y+ DV+ S AFG VDS P+DPFV+
Sbjct: 153 VPLISQACDLLLAHLKRYAESGDAFDIQRCYCNYTTDVVASVAFGTPVDSWQAPEDPFVK 212
Query: 730 NSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDT 906
+ ++ + + + FF + I+ + R +
Sbjct: 213 HCKRFFEFCIPRPILVLLLSFPSIMVPLARILPNKNRDELNGFFNKLIRNVIALRDQQAA 272
Query: 907 QKHRVDLLQLMINSQNS------------KEMDAHKG-----------------LSNEEL 999
++ R D LQ+++++++S +++ + G L+ +E+
Sbjct: 273 EERRRDFLQMVLDARHSASPMGVQDFDIVRDVFSSTGCKPNPSRQHQPSPMARPLTVDEI 332
Query: 1000 VAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-ME 1176
V Q IF+ AGYE +++LS Y LAT+PD Q+KL E+D + P + L + +
Sbjct: 333 VGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLREVDVFKEKHMAPEFCSLEEGLP 392
Query: 1177 YLDMVVNESLRIFP 1218
YLDMV+ E+LR++P
Sbjct: 393 YLDMVIAETLRMYP 406
>ref|NP_112246.2| thromboxane-A synthase isoform 2 [Homo sapiens].
Length = 460
Score = 169 bits (429), Expect = 4e-42
Identities = 111/374 (29%), Positives = 191/374 (51%), Gaps = 32/374 (8%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLG+ P+P P+ GN+ +R+G + + YG + G++ GR+ + I++
Sbjct: 34 TSAFSRLEKLGLRHPKPSPFIGNLTFFRQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 93
Query: 373 PDMIKTVLVKECYSVFTNRRSFGPR-GAMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEM 549
PDMIK VLV E +S FTNR + G ++ +V D+ W+ +R L F+ KL EM
Sbjct: 94 PDMIKQVLV-ENFSNFTNRMASGLEFKSVADSVLFLRDKRWEEVRGALMSAFSPEKLNEM 152
Query: 550 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVE 729
P+IS DLL+++L++ AE G ++ + Y+ DV+ S AFG VDS P+DPFV+
Sbjct: 153 VPLISQACDLLLAHLKRYAESGDAFDIQRCYCNYTTDVVASVAFGTPVDSWQAPEDPFVK 212
Query: 730 NSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDT 906
+ ++ + + + FF + I+ + R +
Sbjct: 213 HCKRFFEFCIPRPILVLLLSFPSIMVPLARILPNKNRDELNGFFNKLIRNVIALRDQQAA 272
Query: 907 QKHRVDLLQLMINSQNS------------KEMDAHKG-----------------LSNEEL 999
++ R D LQ+++++++S +++ + G L+ +E+
Sbjct: 273 EERRRDFLQMVLDARHSASPMGVQDFDIVRDVFSSTGCKPNPSRQHQPSPMARPLTVDEI 332
Query: 1000 VAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-ME 1176
V Q IF+ AGYE +++LS Y LAT+PD Q+KL E+D + P + L + +
Sbjct: 333 VGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLREVDVFKEKHMAPEFCSLEEGLP 392
Query: 1177 YLDMVVNESLRIFP 1218
YLDMV+ E+LR++P
Sbjct: 393 YLDMVIAETLRMYP 406
>ref|NP_001052.2| thromboxane-A synthase isoform 1 [Homo sapiens].
Length = 534
Score = 169 bits (429), Expect = 4e-42
Identities = 111/374 (29%), Positives = 191/374 (51%), Gaps = 32/374 (8%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLG+ P+P P+ GN+ +R+G + + YG + G++ GR+ + I++
Sbjct: 34 TSAFSRLEKLGLRHPKPSPFIGNLTFFRQGFWESQMELRKLYGPLCGYYLGRRMFIVISE 93
Query: 373 PDMIKTVLVKECYSVFTNRRSFGPR-GAMRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEM 549
PDMIK VLV E +S FTNR + G ++ +V D+ W+ +R L F+ KL EM
Sbjct: 94 PDMIKQVLV-ENFSNFTNRMASGLEFKSVADSVLFLRDKRWEEVRGALMSAFSPEKLNEM 152
Query: 550 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVE 729
P+IS DLL+++L++ AE G ++ + Y+ DV+ S AFG VDS P+DPFV+
Sbjct: 153 VPLISQACDLLLAHLKRYAESGDAFDIQRCYCNYTTDVVASVAFGTPVDSWQAPEDPFVK 212
Query: 730 NSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDT 906
+ ++ + + + FF + I+ + R +
Sbjct: 213 HCKRFFEFCIPRPILVLLLSFPSIMVPLARILPNKNRDELNGFFNKLIRNVIALRDQQAA 272
Query: 907 QKHRVDLLQLMINSQNS------------KEMDAHKG-----------------LSNEEL 999
++ R D LQ+++++++S +++ + G L+ +E+
Sbjct: 273 EERRRDFLQMVLDARHSASPMGVQDFDIVRDVFSSTGCKPNPSRQHQPSPMARPLTVDEI 332
Query: 1000 VAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-ME 1176
V Q IF+ AGYE +++LS Y LAT+PD Q+KL E+D + P + L + +
Sbjct: 333 VGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLREVDVFKEKHMAPEFCSLEEGLP 392
Query: 1177 YLDMVVNESLRIFP 1218
YLDMV+ E+LR++P
Sbjct: 393 YLDMVIAETLRMYP 406
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,225,692
Number of extensions: 1325967
Number of successful extensions: 3642
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 3610
Number of HSP's successfully gapped: 57
Length of query: 411
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 306
Effective length of database: 14,835,944
Effective search space: 4539798864
Effective search space used: 4539798864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031845.1| cytochrome P450 3A13 [Mus musculus]. 489 e-138
Alignment gi|NP_062766.2| cytochrome P450 3A25 [Mus musculus]. 483 e-136
Alignment gi|NP_001098630.1| cytochrome P450, subfamily 3A, polypeptide 5... 472 e-133
Alignment gi|NP_059092.2| cytochrome P450 3A41 [Mus musculus]. 466 e-131
Alignment gi|NP_001098629.1| cytochrome P450 3A41 [Mus musculus]. 466 e-131
Alignment gi|NP_001093650.1| cytochrome P450, family 3, subfamily a, poly... 466 e-131
Alignment gi|NP_031844.1| cytochrome P450 3A11 [Mus musculus]. 465 e-131
Alignment gi|NP_031846.2| cytochrome P450 3A16 [Mus musculus]. 445 e-125
Alignment gi|NP_796354.1| cytochrome P450, family 3, subfamily a, polypep... 441 e-124
Alignment gi|NP_035669.3| thromboxane-A synthase [Mus musculus]. 174 1e-43
>ref|NP_031845.1| cytochrome P450 3A13 [Mus musculus].
Length = 503
Score = 489 bits (1258), Expect = e-138
Identities = 236/373 (63%), Positives = 288/373 (77%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FS ETW GT+SHG+FKKLGIPGP+PLP+ G IL Y+KG
Sbjct: 1 MDLIPNFSMETWMLLATSLVLLYLYGTHSHGIFKKLGIPGPKPLPFLGTILAYQKGFWEC 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C ++YGKMWG +DGRQPVLAITDPD+IKTVLVKECYS FTNRR FGP G ++ A+S+
Sbjct: 61 DIQCHKKYGKMWGLYDGRQPVLAITDPDIIKTVLVKECYSTFTNRRRFGPVGILKKAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+E+EEWKRIR LLSPTFTSG+LKEMFPII+ + D+LV N+R+ +GKP +MKDIFGAYS
Sbjct: 121 SENEEWKRIRALLSPTFTSGRLKEMFPIINQFTDVLVRNMRQGLGEGKPTSMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT+T+FGVN+DSLNNPQDPFVE +KLLK + LN++L
Sbjct: 181 MDVITATSFGVNIDSLNNPQDPFVEKIKKLLKFDIFDPLFLSVTLFPFLTPVFDALNVSL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ V++FFT S++RMKE+R+K+ +K RVD LQLMINSQN K ++HK LS+ E+VAQ V
Sbjct: 241 FPRDVISFFTTSVERMKENRMKEKEKQRVDFLQLMINSQNYKTKESHKALSDVEIVAQSV 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS+LS +Y LA HPDVQ+KLQ+EIDA PNK P TYD L QMEYLDMVV
Sbjct: 301 IFIFAGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR++P+ RL
Sbjct: 361 NETLRLYPIAGRL 373
>ref|NP_062766.2| cytochrome P450 3A25 [Mus musculus].
Length = 503
Score = 483 bits (1243), Expect = e-136
Identities = 230/373 (61%), Positives = 285/373 (76%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP S ETW GTYSHGLFKKLGIPGP+PLP G I Y G+ F
Sbjct: 1 MELIPNLSIETWVLLVTSLVLFYIYGTYSHGLFKKLGIPGPKPLPLLGTIFNYYDGMWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D+ C+++YGK+WGF++G QP+LAI DP++IK VLVKECYSVFTNRR FGP G M+ A+++
Sbjct: 61 DEDCYKKYGKIWGFYEGPQPILAIMDPEIIKIVLVKECYSVFTNRRFFGPVGFMKKAITI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKR+RTLLSPTFTSGKLKEMFPI+ YGD+LV NLR+E EKG+P++MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSGKLKEMFPIMRQYGDILVRNLRREEEKGEPISMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T+FGVNVDSLNNPQDPFV+ ++K+LK E+LN ++
Sbjct: 181 MDVITGTSFGVNVDSLNNPQDPFVQKAKKILKFKIFDPFLLSIILFPFLTPIYEMLNFSI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ +NFF + +KRMK+ RL QK+RVD LQLM+N+QNSK ++ K LS+ E+ AQ V
Sbjct: 241 FPRDSMNFFKKFVKRMKKERLASNQKNRVDFLQLMMNTQNSKGQESQKALSDLEMAAQAV 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIF GY+ TS+S+SL++YELATHPDVQ+KLQ+EID T PNK P TYD L MEYLDMVV
Sbjct: 301 IFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NESLR++P+ RL
Sbjct: 361 NESLRLYPIAIRL 373
>ref|NP_001098630.1| cytochrome P450, subfamily 3A, polypeptide 59 [Mus musculus].
Length = 503
Score = 472 bits (1214), Expect = e-133
Identities = 224/373 (60%), Positives = 283/373 (75%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP S ETW GTYSHGLFKKLGIPGP+PLP FG I Y G+ F
Sbjct: 1 MELIPNLSIETWVLLVTSLVFFYIYGTYSHGLFKKLGIPGPKPLPLFGTIFNYFDGMWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D+ C+++YGK+WGF+ G +P+LAI DP++IK VLVKECYSVFTNR + GP G ++ ++++
Sbjct: 61 DEDCYKKYGKIWGFYVGPKPILAIMDPEIIKIVLVKECYSVFTNRPTLGPVGFLKKSITI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKR+RTLLSPTFTSGKLKEMFPI+ YGD+LV NLR+E EKG+P+ MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSGKLKEMFPIMRQYGDILVRNLRREEEKGEPINMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T+FGVN+DSLNNPQ+PFV+ ++K+LK E+LN+++
Sbjct: 181 MDVITGTSFGVNIDSLNNPQNPFVQKTKKILKFKIFDPFLLSTILFPFLTPIYEMLNLSI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ +NFF + +KRMK+ RL QK+RVD LQLM+N+QNSK ++ K LS+ E+ AQ V
Sbjct: 241 FPRDSMNFFKKFVKRMKKERLASKQKNRVDFLQLMMNTQNSKGQESQKALSDLEMAAQAV 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIF GY+ TS+S+SL++YELATHPDVQ+KLQ+EID T PNK P TYD L MEYLDMVV
Sbjct: 301 IFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NESLR++P RL
Sbjct: 361 NESLRLYPTAIRL 373
>ref|NP_059092.2| cytochrome P450 3A41 [Mus musculus].
Length = 504
Score = 466 bits (1200), Expect = e-131
Identities = 223/374 (59%), Positives = 277/374 (74%), Gaps = 1/374 (0%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+L S +TW GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGK WG FDG+ P+ ITDP+MIK VLVKEC+SVFTNRR FGP G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
++DEEWKR R LLSPTFTSGKLKEMFP+I YGD+LV L +EAEKGKPVTMKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
+DVITST+FGVNVDSLNNP+DPFVE ++ +L+ E+LNI +
Sbjct: 181 IDVITSTSFGVNVDSLNNPEDPFVEKAKGILRVDFFDPLVFSVVLFPFLTPVYEMLNICM 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINS-QNSKEMDAHKGLSNEELVAQG 1011
FPK + FF + + RMKESRL QKHRVD LQLM+N+ NSK+ D+HK LS+ E+ AQ
Sbjct: 241 FPKDSIEFFKKFVNRMKESRLDSKQKHRVDFLQLMMNAHNNSKDKDSHKALSDMEITAQS 300
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
++FIFAGYETTSS+LS +Y LATHPD+Q+KLQEEID T PNK PPTYD + +MEYLDMV
Sbjct: 301 IVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMV 360
Query: 1192 VNESLRIFPVTPRL 1233
+NE+LR++P+ RL
Sbjct: 361 LNETLRLYPIGNRL 374
>ref|NP_001098629.1| cytochrome P450 3A41 [Mus musculus].
Length = 504
Score = 466 bits (1200), Expect = e-131
Identities = 223/374 (59%), Positives = 277/374 (74%), Gaps = 1/374 (0%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+L S +TW GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTWVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGK WG FDG+ P+ ITDP+MIK VLVKEC+SVFTNRR FGP G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQMPLFVITDPEMIKNVLVKECFSVFTNRREFGPVGIMSKAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
++DEEWKR R LLSPTFTSGKLKEMFP+I YGD+LV L +EAEKGKPVTMKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLMQEAEKGKPVTMKDVLGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
+DVITST+FGVNVDSLNNP+DPFVE ++ +L+ E+LNI +
Sbjct: 181 IDVITSTSFGVNVDSLNNPEDPFVEKAKGILRVDFFDPLVFSVVLFPFLTPVYEMLNICM 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINS-QNSKEMDAHKGLSNEELVAQG 1011
FPK + FF + + RMKESRL QKHRVD LQLM+N+ NSK+ D+HK LS+ E+ AQ
Sbjct: 241 FPKDSIEFFKKFVNRMKESRLDSKQKHRVDFLQLMMNAHNNSKDKDSHKALSDMEITAQS 300
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
++FIFAGYETTSS+LS +Y LATHPD+Q+KLQEEID T PNK PPTYD + +MEYLDMV
Sbjct: 301 IVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMV 360
Query: 1192 VNESLRIFPVTPRL 1233
+NE+LR++P+ RL
Sbjct: 361 LNETLRLYPIGNRL 374
>ref|NP_001093650.1| cytochrome P450, family 3, subfamily a, polypeptide 57 [Mus
musculus].
Length = 503
Score = 466 bits (1198), Expect = e-131
Identities = 221/373 (59%), Positives = 281/373 (75%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+LIP S +TW GTYSHGLFKKLGIPGP+PLP FGNI+ Y G+ F
Sbjct: 1 MELIPNLSIQTWVLLVTSLVFFYIYGTYSHGLFKKLGIPGPKPLPLFGNIINYLDGMWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D C+++YGK+WGF++G QP+LAI DP++IK VLVKECYSVFTNRR FGP G ++ ++++
Sbjct: 61 DDDCYKKYGKIWGFYEGPQPILAIMDPEIIKIVLVKECYSVFTNRRPFGPVGFLKKSITI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
+EDEEWKR+RTLLSPTFTS KLKEMFPI+ YGD+LV NLR+E EK +P+ MKDIFGAYS
Sbjct: 121 SEDEEWKRLRTLLSPTFTSSKLKEMFPIMRQYGDILVRNLRREEEKEEPINMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVIT T+ GVN+DSLNNPQDPFV+ +K+LK E+LN+++
Sbjct: 181 MDVITGTSCGVNIDSLNNPQDPFVQKIKKILKFKFFDPFLLSVVLFPFLTPIYEMLNLSI 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+ +NFF + +K+MK+ RL QK+RVD LQLM+N+QNSK ++ K LS+ E+ AQ +
Sbjct: 241 FPRQSMNFFKKFVKKMKKDRLDYNQKNRVDFLQLMMNTQNSKGQESLKALSDLEMAAQTL 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIF GY+ TS+S+S ++YELATHPDVQ+KLQ+EID PNK P TYD L MEYLDMVV
Sbjct: 301 IFIFGGYDGTSTSISFIMYELATHPDVQKKLQDEIDRALPNKAPVTYDALMDMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NESLR++PV R+
Sbjct: 361 NESLRLYPVVSRI 373
>ref|NP_031844.1| cytochrome P450 3A11 [Mus musculus].
Length = 504
Score = 465 bits (1196), Expect = e-131
Identities = 223/374 (59%), Positives = 277/374 (74%), Gaps = 1/374 (0%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDL+ S ETW GT H LFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MDLVSALSLETWVLLAISLVLLYRYGTRKHELFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGK WG FDG+ P+LA+TDP+ IK VLVKEC+SVFTNRR FGP G M A+S+
Sbjct: 61 DMECYKKYGKTWGLFDGQTPLLAVTDPETIKNVLVKECFSVFTNRRDFGPVGIMSKAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
++D+EWKR R LLSPTFTSGKLKEMFP+I YGD+LV LR++A+KGKPVTMKD+ GAYS
Sbjct: 121 SKDDEWKRYRALLSPTFTSGKLKEMFPVIEQYGDILVKYLRQKAKKGKPVTMKDVLGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVNVDSLNNP+DPFVE ++KLL+ E+LNI +
Sbjct: 181 MDVITSTSFGVNVDSLNNPEDPFVEKAKKLLRFDFFDPLLFSVVLFPFLTPVYEMLNICM 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINS-QNSKEMDAHKGLSNEELVAQG 1011
FPK + FF + + RMKESRL QKHRVD LQLM+NS NSK+ +HK LS+ E+ AQ
Sbjct: 241 FPKDSIEFFKKFVDRMKESRLDSKQKHRVDFLQLMMNSHNNSKDKVSHKALSDMEITAQS 300
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
+IFIFAGYETTSS+LS ++ LATHPD+Q+KLQ+EID PNK PPTYD + +MEYLDMV
Sbjct: 301 IIFIFAGYETTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMV 360
Query: 1192 VNESLRIFPVTPRL 1233
+NE+LR++P+ RL
Sbjct: 361 LNETLRLYPIANRL 374
>ref|NP_031846.2| cytochrome P450 3A16 [Mus musculus].
Length = 504
Score = 445 bits (1144), Expect = e-125
Identities = 216/374 (57%), Positives = 267/374 (71%), Gaps = 1/374 (0%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+L S +T GT +HGLFKK GIPGP+PLP+ G +L Y KG+ F
Sbjct: 1 MNLFSALSLDTLVLLAIILVLLYRYGTCTHGLFKKQGIPGPKPLPFLGTVLNYYKGLWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGK WG FDG+ P+ ITDP+ IK VLVKEC+SVFTNR+ F P G M ++SL
Sbjct: 61 DMECYEKYGKTWGLFDGQIPLFVITDPETIKNVLVKECFSVFTNRQDFFPVGIMSKSISL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
A+DEEWKR R LLSPTFTSG LKEMFP+I YGD+LV LR+EAEKGKPV +KD+ GAYS
Sbjct: 121 AKDEEWKRYRALLSPTFTSGNLKEMFPVIEQYGDILVKYLRQEAEKGKPVAVKDVLGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVI ST FGVN+DSLNNP+DPFVEN++K+L+ E+LNI +
Sbjct: 181 MDVIISTTFGVNIDSLNNPEDPFVENAKKVLRFDYFDPLSLSVALFPFLTPIYEMLNICM 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQN-SKEMDAHKGLSNEELVAQG 1011
FPK + FF + + RM E+RL QKHRVD + LM+ + N SK+ D+HK LS E+ AQ
Sbjct: 241 FPKDSIEFFKKFVDRMTENRLDSKQKHRVDFIYLMMEAYNKSKDKDSHKALSEIEITAQS 300
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
+IFIFAGYETTSS LS VY LATHPD+Q+KLQEEID PNK PPTYD + MEYLDMV
Sbjct: 301 IIFIFAGYETTSSILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMV 360
Query: 1192 VNESLRIFPVTPRL 1233
+NE+LR++P+T RL
Sbjct: 361 LNETLRLYPITNRL 374
>ref|NP_796354.1| cytochrome P450, family 3, subfamily a, polypeptide 44 [Mus
musculus].
Length = 504
Score = 441 bits (1133), Expect = e-124
Identities = 214/374 (57%), Positives = 265/374 (70%), Gaps = 1/374 (0%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
M+L S +T GT +HGLFKK GIPGP+PLP+ G +L Y G+ F
Sbjct: 1 MNLFSALSLDTLVLLAIILVLLYRYGTRTHGLFKKQGIPGPKPLPFLGTVLNYYTGIWKF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D +C+++YGK WG FDG+ P+L ITDP+ IK VLVK+C SVFTNRR FGP G M A+S+
Sbjct: 61 DMECYEKYGKTWGLFDGQTPLLVITDPETIKNVLVKDCLSVFTNRREFGPVGIMSKAISI 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
++DEEWKR R LLSPTFTSG+LKEMFP+I YGD+LV LR+EAEKG PV MKD+ GAYS
Sbjct: 121 SKDEEWKRYRALLSPTFTSGRLKEMFPVIEQYGDILVKYLRQEAEKGMPVAMKDVLGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITST+FGVNVDSLNNP+DPFVE ++K L+ E+LNI +
Sbjct: 181 MDVITSTSFGVNVDSLNNPEDPFVEEAKKFLRVDFFDPLLFSVVLFPLLTPVYEMLNICM 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINS-QNSKEMDAHKGLSNEELVAQG 1011
FP + FF + + RM+ESRL QKHRVD LQLM+NS NSK+ D+HK SN E+ Q
Sbjct: 241 FPNDSIEFFKKFVDRMQESRLDSNQKHRVDFLQLMMNSHNNSKDKDSHKAFSNMEITVQS 300
Query: 1012 VIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMV 1191
+IFI AGYETTSS+LS +Y LATHPD+Q+KLQ EID PNK PT D + +MEYLDMV
Sbjct: 301 IIFISAGYETTSSTLSFTLYCLATHPDIQKKLQAEIDKALPNKATPTCDTVMEMEYLDMV 360
Query: 1192 VNESLRIFPVTPRL 1233
+NE+LR++P+ RL
Sbjct: 361 LNETLRLYPIVTRL 374
>ref|NP_035669.3| thromboxane-A synthase [Mus musculus].
Length = 533
Score = 174 bits (442), Expect = 1e-43
Identities = 111/367 (30%), Positives = 187/367 (50%), Gaps = 32/367 (8%)
Frame = +1
Query: 214 KKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTV 393
+KLGI P+P P+ GN++ +R+G + ++YG + G++ GR+ + I++PDMIK V
Sbjct: 40 EKLGIRHPKPSPFVGNLMFFRQGFWESQLELRERYGPLCGYYLGRRMHVVISEPDMIKQV 99
Query: 394 LVKECYSVFTNRRSFGPRGAM-RSAVSLAEDEEWKRIRTLLSPTFTSGKLKEMFPIISHY 570
LV E +S F+NR + G M +V L D W+ +R L +F+ KL EM P+IS
Sbjct: 100 LV-ENFSNFSNRMASGLEPKMVADSVLLLRDRRWEEVRGALMSSFSPEKLDEMTPLISQA 158
Query: 571 GDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVENSRKLLK 750
+LLV++L++ A ++ + Y++DV+ S AFG VDS N+P+DPFV++ R+
Sbjct: 159 CELLVAHLKRYAASRDAFNIQRCYCCYTIDVVASVAFGTQVDSQNSPEDPFVQHCRRAST 218
Query: 751 XXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDTQKHRVDL 927
+ + FF I+ + R + ++ R D
Sbjct: 219 FCIPRPLLVLILSFPSIMVPLARILPNKNRDELNGFFNTLIRNVIALRDQQAAEERRRDF 278
Query: 928 LQLMINSQNSKE-----------------------------MDAHKGLSNEELVAQGVIF 1020
LQ+++++Q+S K + +E+V Q +F
Sbjct: 279 LQMVLDAQHSMNSVGVEGFDMVPESLSSSECTKEPPQRCHPTSTSKPFTVDEIVGQAFLF 338
Query: 1021 IFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-MEYLDMVVN 1197
+ AG+E +++LS + Y LATHPD Q++L +E+D P Y L + + YLDMV++
Sbjct: 339 LIAGHEVITNTLSFITYLLATHPDCQERLLKEVDLFMGKHPAPEYHSLQEGLPYLDMVIS 398
Query: 1198 ESLRIFP 1218
E+LR++P
Sbjct: 399 ETLRMYP 405
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,857,790
Number of extensions: 1117499
Number of successful extensions: 3063
Number of sequences better than 1.0e-05: 68
Number of HSP's gapped: 3004
Number of HSP's successfully gapped: 73
Length of query: 411
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 307
Effective length of database: 12,493,815
Effective search space: 3835601205
Effective search space used: 3835601205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa]. 669 0.0
Alignment gi|NP_999587.1| cytochrome P450 3A39 [Sus scrofa]. 626 e-180
Alignment gi|NP_999588.1| cytochrome P450 3A29 [Sus scrofa]. 622 e-178
Alignment gi|NP_001182438.1| cytochrome P450, subfamily IIIA, polypeptide... 538 e-153
Alignment gi|NP_999211.1| thromboxane-A synthase [Sus scrofa]. 170 1e-42
Alignment gi|XP_003128765.2| PREDICTED: cholesterol 24-hydroxylase-like [... 95 7e-20
Alignment gi|XP_003127953.1| PREDICTED: cytochrome P450 4A11-like [Sus sc... 80 2e-15
Alignment gi|XP_003360166.1| PREDICTED: thromboxane-A synthase-like [Sus ... 77 2e-14
Alignment gi|XP_003128064.2| PREDICTED: cytochrome P450 4A24-like isoform... 77 2e-14
Alignment gi|XP_003356525.1| PREDICTED: cytochrome P450 4A24-like isoform... 77 2e-14
>ref|NP_001128296.1| cytochrome P450 3A46 [Sus scrofa].
Length = 503
Score = 669 bits (1726), Expect = 0.0
Identities = 338/373 (90%), Positives = 338/373 (90%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL
Sbjct: 61 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITSTAFGVNVDSLNNPQDPFVENSRKLLK EVLNITL
Sbjct: 181 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKFSFFSPFFLSIIFFPFLTPILEVLNITL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV
Sbjct: 241 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNK PPTYDGLAQMEYLDMVV
Sbjct: 301 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKAPPTYDGLAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NESLRIFPVTPRL
Sbjct: 361 NESLRIFPVTPRL 373
>ref|NP_999587.1| cytochrome P450 3A39 [Sus scrofa].
Length = 503
Score = 626 bits (1615), Expect = e-180
Identities = 314/373 (84%), Positives = 324/373 (86%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMR+A+SL
Sbjct: 61 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRTALSL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITSTAFGVN D LNNPQDPFVENS+KLLK EVLN+TL
Sbjct: 181 MDVITSTAFGVNTDFLNNPQDPFVENSKKLLKFSFFSPLFLSIIFFPFLTPILEVLNVTL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKSVVNFF RSIKRMKESRLKD Q HRVD LQLMINSQNSKE D HKGLS+EELVAQGV
Sbjct: 241 FPKSVVNFFMRSIKRMKESRLKDKQTHRVDFLQLMINSQNSKETDTHKGLSDEELVAQGV 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
FIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFP+K P+YD LAQMEYLDMVV
Sbjct: 301 FFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPSKALPSYDALAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE LR++P+ RL
Sbjct: 361 NEILRLYPIAARL 373
>ref|NP_999588.1| cytochrome P450 3A29 [Sus scrofa].
Length = 503
Score = 622 bits (1605), Expect = e-178
Identities = 308/373 (82%), Positives = 326/373 (87%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIPGFSTETW GTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF
Sbjct: 1 MDLIPGFSTETWVLLATSLVLLYLYGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
DKKCFQQYGKMWG +DGRQP+LA+TDP+MIK+VLVKECYSVFTNRRSFGP GAMR+A+SL
Sbjct: 61 DKKCFQQYGKMWGVYDGRQPLLAVTDPNMIKSVLVKECYSVFTNRRSFGPLGAMRNALSL 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS
Sbjct: 121 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITSTAFGVN+DSLNNPQDPFVENS+KLLK EVLNITL
Sbjct: 181 MDVITSTAFGVNIDSLNNPQDPFVENSKKLLKFSFFDPFLLSLIFFPFLTPIFEVLNITL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FPKS VNFFT+S+KRMKESRL D QK RVDLLQLMINSQNSKEMD HK LSNEELVAQG+
Sbjct: 241 FPKSSVNFFTKSVKRMKESRLTDQQKRRVDLLQLMINSQNSKEMDPHKSLSNEELVAQGI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFIFAGYETTSS+LSLL YELATHPDVQQKLQEEI+ATFPNK PPTYD LAQMEYLDMVV
Sbjct: 301 IFIFAGYETTSSALSLLAYELATHPDVQQKLQEEIEATFPNKAPPTYDALAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE+LR++P+ RL
Sbjct: 361 NETLRLYPIAARL 373
>ref|NP_001182438.1| cytochrome P450, subfamily IIIA, polypeptide 22 [Sus scrofa].
Length = 503
Score = 538 bits (1386), Expect = e-153
Identities = 264/373 (70%), Positives = 302/373 (80%)
Frame = +1
Query: 115 MDLIPGFSTETWXXXXXXXXXXXXXGTYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHF 294
MDLIP FS ETW GTYSHGLFKKLGIPGP+PLPY G++L YRKG+ HF
Sbjct: 1 MDLIPSFSVETWLLLATSLVLLYLYGTYSHGLFKKLGIPGPKPLPYLGSVLEYRKGMWHF 60
Query: 295 DKKCFQQYGKMWGFFDGRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSL 474
D KCF++YGKMWGF+DGRQPVLA+ DP+MIK VLVKECYS FTNRR+FGP G M++A+S+
Sbjct: 61 DNKCFKKYGKMWGFYDGRQPVLAMRDPEMIKAVLVKECYSAFTNRRNFGPAGVMKNAISV 120
Query: 475 AEDEEWKRIRTLLSPTFTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYS 654
A+DE+WKR+RTLLSPTFTSGKLKEMFPII+ YGD+LV NLRKEAEKG + K+IFGAYS
Sbjct: 121 AKDEQWKRVRTLLSPTFTSGKLKEMFPIIAQYGDMLVRNLRKEAEKGNSINTKEIFGAYS 180
Query: 655 MDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITL 834
MDVITSTAFGV+VDSLNNP+DPFV+ +RKLL+ EVL+ITL
Sbjct: 181 MDVITSTAFGVDVDSLNNPRDPFVQYARKLLRFDFLDPFILSIILFPFLSPFFEVLDITL 240
Query: 835 FPKSVVNFFTRSIKRMKESRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGV 1014
FP+S V FFT+S+KRMKESRLKD Q RVDLLQLMINSQNSKE DAHK LS++ELVAQ +
Sbjct: 241 FPRSSVKFFTQSVKRMKESRLKDQQMRRVDLLQLMINSQNSKETDAHKALSDQELVAQSI 300
Query: 1015 IFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVV 1194
IFI AGYETTSSSLS L Y LATHPDVQQ LQEEIDATFP+K P+YD LAQMEYLDMVV
Sbjct: 301 IFICAGYETTSSSLSFLAYILATHPDVQQNLQEEIDATFPSKALPSYDALAQMEYLDMVV 360
Query: 1195 NESLRIFPVTPRL 1233
NE LR++P+ RL
Sbjct: 361 NEILRLYPIAARL 373
>ref|NP_999211.1| thromboxane-A synthase [Sus scrofa].
Length = 534
Score = 170 bits (431), Expect = 1e-42
Identities = 110/375 (29%), Positives = 191/375 (50%), Gaps = 33/375 (8%)
Frame = +1
Query: 193 TYSHGLFKKLGIPGPRPLPYFGNILGYRKGVDHFDKKCFQQYGKMWGFFDGRQPVLAITD 372
T + +KLGI P+P P+ GN+ +R+G + +QYG + G++ GR+ ++ I+D
Sbjct: 33 TSAFSRLEKLGIRHPKPSPFIGNLTFFRQGFWESHMELRKQYGPLSGYYLGRRMIVVISD 92
Query: 373 PDMIKTVLVKECYSVFTNRRSFGPRGA-MRSAVSLAEDEEWKRIRTLLSPTFTSGKLKEM 549
PDMIK VL ++ +S FTNR + G + ++ D+ W+ +R++L+ F+ KL ++
Sbjct: 93 PDMIKQVLAEK-FSNFTNRMATGLESKPVADSILFLRDKRWEEVRSVLTSAFSPKKLNKL 151
Query: 550 FPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNNPQDPFVE 729
P+IS DLL+++L + AE G ++ + Y+ DV+ S AFG V+S P+ PFV+
Sbjct: 152 TPLISQACDLLLAHLERYAESGDAFDIQRCYCCYTTDVVASVAFGTQVNSSEEPEHPFVK 211
Query: 730 NSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKESR-LKDT 906
+ R+ + V FF + I+ + R +
Sbjct: 212 HCRRFFAFSVPRLILVLILSFPSIMVPLARILPNKKRDEVNGFFNKLIRNVIALRDQQAA 271
Query: 907 QKHRVDLLQLMINSQNS-------------KEMDAHKG-----------------LSNEE 996
++ R D LQ++++ ++S + + KG L+ +E
Sbjct: 272 EERRQDFLQMVLDLRHSAPSVGVENFDIVRQAFSSAKGCPADPSQPHLPRPLSKPLTVDE 331
Query: 997 LVAQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQ-M 1173
+V Q +F+ AGYE +++LS + Y LAT+PD Q+KL E+D P + L Q +
Sbjct: 332 VVGQAFLFLIAGYEIITNTLSFVTYLLATNPDCQEKLLREVDDFSKKHPSPEHCSLQQGL 391
Query: 1174 EYLDMVVNESLRIFP 1218
YLDMV++E+LR++P
Sbjct: 392 PYLDMVLSETLRMYP 406
>ref|XP_003128765.2| PREDICTED: cholesterol 24-hydroxylase-like [Sus scrofa].
Length = 393
Score = 95.1 bits (235), Expect = 7e-20
Identities = 69/290 (23%), Positives = 131/290 (45%), Gaps = 5/290 (1%)
Frame = +1
Query: 364 ITDPDMIKTVLVKECYSVFTN-----RRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPTFT 528
+T P+ +K L+ Y+ + + FG R + VS + E W + R ++ F+
Sbjct: 70 VTSPESVKRFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRVMDLAFS 129
Query: 529 SGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKDIFGAYSMDVITSTAFGVNVDSLNN 708
L + I + + LV L +A+ PV+M+D+ +MD++ AFG+ L
Sbjct: 130 RSSLVSLMGIFNEKAEQLVEILEAQADGQTPVSMQDMLTCTTMDILAKAAFGIETSMLLG 189
Query: 709 PQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNITLFPKSVVNFFTRSIKRMKE 888
Q P + +L+ E+ F + V + ++R +E
Sbjct: 190 AQKPLSRKVKLILEGISSSRNTLAKFMPGKWKQLREIRESVRFLRQVGKDW---VQRRRE 246
Query: 889 SRLKDTQKHRVDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYETTSSSLSLLV 1068
+ L+ + D+L ++ ++ + D E L+ V F AG+ET+++ L+ V
Sbjct: 247 A-LQRGEDVPADILTQILKAEEGAQDD-------EILLDNFVTFFIAGHETSANHLAFTV 298
Query: 1069 YELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFP 1218
EL+ P++ +LQ E+D +K + L +++YL V+ ESLR++P
Sbjct: 299 MELSRQPEILARLQAEVDEVIGSKRHLDCEDLGRLQYLSQVLKESLRLYP 348
>ref|XP_003127953.1| PREDICTED: cytochrome P450 4A11-like [Sus scrofa].
Length = 510
Score = 80.1 bits (196), Expect = 2e-15
Identities = 74/317 (23%), Positives = 138/317 (43%), Gaps = 20/317 (6%)
Frame = +1
Query: 343 GRQPVLAITDPDMIKTVLVKECYSVFTNRRSFGPRGAMRSAVSLAEDEEWKRIRTLLSPT 522
G + L I DPD +K VL + + + P + + L++ + W + R +L+P
Sbjct: 92 GNKAHLVIYDPDYMKVVLGRSDPKLTDVHKFLSPW--IGYGLLLSDGQTWFQHRRMLTPA 149
Query: 523 FTSGKLKEMFPIISHYGDLLVSNLRKEAEKGKPVTMKD----IFGAYSM---DVITSTAF 681
F + I+ Y +L+ +++ +K + + +D IFG S+ D + AF
Sbjct: 150 FH-------YDILKPYVNLMADSVKVMLDKWEQLVTQDSHLEIFGHVSLMTLDTVMKCAF 202
Query: 682 GVN------------VDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLN 825
+ ++ N FV R L +
Sbjct: 203 SYQGSVQTDRNSHSYIQAVGNLNSLFVARLRSALYQNDIIYRLSPEGRLSRQACQLAHQH 262
Query: 826 ITLFPKSVVNFFTRSIKRMKESRLKDTQKHR-VDLLQLMINSQNSKEMDAHKGLSNEELV 1002
V+ R KE +++ +K R +D L +++ ++ M+ LS+ +L
Sbjct: 263 TD----QVIRL--RKAHLQKEGEMENLRKKRHLDFLDILLFAR----MENGSSLSDTDLR 312
Query: 1003 AQGVIFIFAGYETTSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYL 1182
A+ F+F G++TT+S +S + Y LA+HP+ QQ+ +EEI + + T+D L QM Y
Sbjct: 313 AEVDTFMFEGHDTTASGISWIFYALASHPEYQQRCREEIRSLLGDGTSITWDHLGQMPYT 372
Query: 1183 DMVVNESLRIFPVTPRL 1233
M + E++R++P P +
Sbjct: 373 TMCIKEAMRLYPPVPAI 389
>ref|XP_003360166.1| PREDICTED: thromboxane-A synthase-like [Sus scrofa].
Length = 489
Score = 77.4 bits (189), Expect = 2e-14
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 32/222 (14%)
Frame = +1
Query: 649 YSMDVITSTAFGVNVDSLNNPQDPFVENSRKLLKXXXXXXXXXXXXXXXXXXXXXEVLNI 828
Y+ DV+ S AFG V+S P+ PFV++ + +
Sbjct: 140 YTTDVVASVAFGTQVNSSEEPEHPFVKHCWRFFAFSVPRLILVLILSFPSIMVPLARILP 199
Query: 829 TLFPKSVVNFFTRSIKRMKESRLKDT-QKHRVDLLQLMINSQNS---------------- 957
V FF + I+ + R + ++ R D LQ++++ ++S
Sbjct: 200 NKKRDEVNGFFNKLIRNVIALRDQQAAEERRQDFLQMVLDLRHSAPSVGVENFDIVRQVF 259
Query: 958 ---KEMDAH-----------KGLSNEELVAQGVIFIFAGYETTSSSLSLLVYELATHPDV 1095
K A+ K L+ +E+V Q +F+ AGYE +++LS + Y LAT+PD
Sbjct: 260 SSAKGCPANPSQPHLPRPLSKPLTVDEVVGQAFLFLIAGYEIITNTLSFVTYLLATNPDC 319
Query: 1096 QQKLQEEIDATFPNKVPPTYDGLAQ-MEYLDMVVNESLRIFP 1218
Q+KL E+D P + L Q + YLDMV++E+LR++P
Sbjct: 320 QEKLLREVDDFSKKHPSPEHCSLQQGLPYLDMVLSETLRMYP 361
>ref|XP_003128064.2| PREDICTED: cytochrome P450 4A24-like isoform 1 [Sus scrofa].
Length = 504
Score = 77.0 bits (188), Expect = 2e-14
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Frame = +1
Query: 865 RSIKRMKESRLKDTQKHR-VDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYET 1041
R + K+ +++ +K R +D L +++ +Q M+ LS+ +L A+ F+F G++T
Sbjct: 264 RKAQLQKQGEMENVRKKRHLDFLDILLLAQ----MEKGNSLSDTDLRAEVDTFMFEGHDT 319
Query: 1042 TSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFPV 1221
T+S +S ++Y LA+HP+ QQ+ +EEI + T+D L QM Y M + E+LR++P
Sbjct: 320 TASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPP 379
Query: 1222 TP 1227
P
Sbjct: 380 VP 381
>ref|XP_003356525.1| PREDICTED: cytochrome P450 4A24-like isoform 2 [Sus scrofa].
Length = 504
Score = 77.0 bits (188), Expect = 2e-14
Identities = 41/122 (33%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Frame = +1
Query: 865 RSIKRMKESRLKDTQKHR-VDLLQLMINSQNSKEMDAHKGLSNEELVAQGVIFIFAGYET 1041
R + K+ +++ +K R +D L +++ +Q M+ LS+ +L A+ F+F G++T
Sbjct: 264 RKAQLQKQGEMENVRKKRHLDFLDILLLAQ----MEKGNSLSDTDLRAEVDTFMFEGHDT 319
Query: 1042 TSSSLSLLVYELATHPDVQQKLQEEIDATFPNKVPPTYDGLAQMEYLDMVVNESLRIFPV 1221
T+S +S ++Y LA+HP+ QQ+ +EEI + T+D L QM Y M + E+LR++P
Sbjct: 320 TASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPP 379
Query: 1222 TP 1227
P
Sbjct: 380 VP 381
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,812,012
Number of extensions: 834671
Number of successful extensions: 2319
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 2300
Number of HSP's successfully gapped: 44
Length of query: 411
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 310
Effective length of database: 8,829,335
Effective search space: 2737093850
Effective search space used: 2737093850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002675
(1234 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896383.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 274 1e-70
gb|GL896415.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 250 2e-63
gb|GL896194.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 182 3e-43
gb|GL896190.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 180 1e-42
gb|GL894734.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 180 1e-42
gb|GL893235.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 168 5e-39
gb|GL896566.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 141 1e-30
gb|GL893067.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 137 2e-29
gb|GL896124.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 119 4e-24
gb|GL896175.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 101 9e-19
>gb|GL896383.1| Sus scrofa unplaced genomic scaffold chrU_scaffold729
Length = 9332
Score = 274 bits (138), Expect = 1e-70
Identities = 151/154 (98%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 32 actgggtgtgaaagcagcaggcaaagcacagcacaaccagctaaaaggaaaatccgagga 91
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4827 actgggtgtgaaagcagcaggcaaagcgcagcacaaccagctaaaaggaaaatccgagga 4768
Query: 92 gagaatcacggaggacagtggccatggacctgatcccaggcttttccacagaaacctggg 151
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4767 gagaatcacg-aggacagtggccatggacctgatcccaggcttttccacagagacctggg 4709
Query: 152 ttctcctggctaccagcctggtgctcctctatct 185
||||||||||||||||||||||||||||||||||
Sbjct: 4708 ttctcctggctaccagcctggtgctcctctatct 4675
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 278 agggtgttgaccattttgacaaaaagtgttttcaac 313
||||||||||||||||||||||||||||||||||||
Sbjct: 434 agggtgttgaccattttgacaaaaagtgttttcaac 399
>gb|GL896415.1| Sus scrofa unplaced genomic scaffold chrU_scaffold758
Length = 10953
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 785 tattctttccattcttgaccccgatcttggaagtattaaacatcactctgtttcccaaaa 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10828 tattctttccattcttgaccccgatcttggaagtattaaacatcactctgtttcccaaaa 10887
Query: 845 gtgttgtgaattttttcacgagatccataaaaaggatgaaggaaagtcgcctcaaagata 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10888 gtgttgtgaattttttcacgagatccataaaaaggatgaaggaaagtcgcctcaaagata 10947
Query: 905 cacaaa 910
||||||
Sbjct: 10948 cacaaa 10953
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 332 ggttttttgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacgg 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2528 ggttttttgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacgg 2587
Query: 392 tcctcgtgaaagaatgttattctgtcttcacaaaccggcgg 432
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 2588 tcctcgtgaaagaatgttattctgtcttcacaaaccggcgg 2628
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 432 gtcttttggtccacgtggtgctatgagaagtgctgtctctctggctgaggatgaagagtg 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5041 gtcttttggtccacgtggtgctatgagaagtgctgtctctctggctgaggatgaagagtg 5100
Query: 492 gaaaagaatccgaacgttgctgtctccgaccttcaccagtg 532
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 5101 gaaaagaatccgaacgttgctgtctccgaccttcaccagtg 5141
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 737 ggaagctcttaaaatttagtttcttcagtccattctttctctcaataa 784
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6418 ggaagctcttaaaatttagtttcttcagtccattctttctctcaataa 6465
>gb|GL896194.1| Sus scrofa unplaced genomic scaffold chrU_scaffold559
Length = 36070
Score = 182 bits (92), Expect = 3e-43
Identities = 131/144 (90%)
Strand = Plus / Plus
Query: 992 aagaacttgtggcccaaggtgttatttttatttttgctgggtatgagaccactagcagtt 1051
||||||||||||||||| || |||| || |||||||| || |||||||||||||||||||
Sbjct: 33510 aagaacttgtggcccaaagtattatcttcatttttgccggctatgagaccactagcagtt 33569
Query: 1052 ctctctccctccttgtgtatgaattggccactcaccctgacgtccagcagaagctgcagg 1111
|||||||| |||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 33570 ctctctccttcctggcgtatatactggccactcaccctgacgtccagcagaagctgcagg 33629
Query: 1112 aggagattgatgcgactttcccca 1135
|||||||||||||||| |||||||
Sbjct: 33630 aggagattgatgcgaccttcccca 33653
Score = 117 bits (59), Expect = 1e-23
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 915 ccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaatggacgccca 974
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 29505 ccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaacggatgccca 29564
Query: 975 taaaggt 981
|||||||
Sbjct: 29565 taaaggt 29571
Score = 107 bits (54), Expect = 1e-20
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 637 atctttggggcctacagcatggacgtgatcactagcacagcatttggagtgaacgtcg 694
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 22834 atctttggggcctacagcatggacgtgatcacaagcacagcatttggagtgaacgtcg 22891
Score = 99.6 bits (50), Expect = 4e-18
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 186 atatgggacttattcacatggcctttttaagaagctggggattcctgggccaagacctct 245
||||||||| |||||||| || ||||||||||||||||||||||| ||||| | ||||||
Sbjct: 8759 atatgggacctattcacacggactttttaagaagctggggattcccgggccgaaacctct 8818
Query: 246 gccttattttggaa 259
||||||||||||||
Sbjct: 8819 gccttattttggaa 8832
Score = 95.6 bits (48), Expect = 5e-17
Identities = 75/84 (89%)
Strand = Plus / Plus
Query: 102 gaggacagtggccatggacctgatcccaggcttttccacagaaacctgggttctcctggc 161
|||||| ||||||||||||||||||||| ||||||| ||||||||| | || |||||
Sbjct: 5049 gaggacggtggccatggacctgatcccaagcttttctgtggaaacctggctgcttctggc 5108
Query: 162 taccagcctggtgctcctctatct 185
||||||||||||||||||||||||
Sbjct: 5109 taccagcctggtgctcctctatct 5132
Score = 89.7 bits (45), Expect = 3e-15
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 545 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 604
||||||||||||||||| ||| |||||||| || ||||||| ||||||||||||||||
Sbjct: 19018 agatgttccccatcattgcccagtatggagatatgctggtgaggaacctgaggaaggaag 19077
Query: 605 cagagaaaggcaa 617
|||||||||||||
Sbjct: 19078 cagagaaaggcaa 19090
Score = 65.9 bits (33), Expect = 5e-08
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 502 cgaacgttgctgtctccgaccttcaccagtggaaagctcaa 542
||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 18717 cgaacattgctgtctccaaccttcaccagtggaaagctcaa 18757
Score = 60.0 bits (30), Expect = 3e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 289 cattttgacaaaaagtgttttcaacagtatgggaaaatgtgggggt 334
||||||||||| || |||||| || |||||||||||||||||||||
Sbjct: 10885 cattttgacaataaatgttttaaaaagtatgggaaaatgtgggggt 10930
>gb|GL896190.1| Sus scrofa unplaced genomic scaffold chrU_scaffold555
Length = 6630
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 1144 cctcccacctacgatggtctggcgcaaatggagtatcttgacatggtggtgaacgaatct 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4310 cctcccacctacgatggtctggcgcaaatggagtatcttgacatggtggtgaacgaatct 4251
Query: 1204 ctcagaatattcccagttactcctagacttg 1234
|||||||||||||||||||||||||||||||
Sbjct: 4250 ctcagaatattcccagttactcctagacttg 4220
>gb|GL894734.1| Sus scrofa unplaced genomic scaffold chrU_scaffold337
Length = 627
Score = 180 bits (91), Expect = 1e-42
Identities = 94/95 (98%)
Strand = Plus / Minus
Query: 186 atatgggacttattcacatggcctttttaagaagctggggattcctgggccaagacctct 245
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atatgggacgtattcacatggcctttttaagaagctggggattcctgggccaagacctct 461
Query: 246 gccttattttggaaatatcctgggctaccgtaagg 280
|||||||||||||||||||||||||||||||||||
Sbjct: 460 gccttattttggaaatatcctgggctaccgtaagg 426
>gb|GL893235.1| Sus scrofa unplaced genomic scaffold chrU_scaffold202
Length = 249
Score = 168 bits (85), Expect = 5e-39
Identities = 97/101 (96%)
Strand = Plus / Plus
Query: 332 ggttttttgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacgg 391
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 53 ggttttttgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacag 112
Query: 392 tcctcgtgaaagaatgttattctgtcttcacaaaccggcgg 432
|||| |||||||||||||| || ||||||||||||||||||
Sbjct: 113 tcctggtgaaagaatgttactcggtcttcacaaaccggcgg 153
>gb|GL896566.1| Sus scrofa unplaced genomic scaffold chrU_scaffold894
Length = 1664
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 911 agcaccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaatggacg 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agcaccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaatggacg 586
Query: 971 cccataaaggt 981
|||||||||||
Sbjct: 585 cccataaaggt 575
>gb|GL893067.1| Sus scrofa unplaced genomic scaffold chrU_scaffold187
Length = 229
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 545 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agatgttccccatcattagccattatggagacttgttggtgagcaacctgaggaaggaag 220
Query: 605 cagagaaag 613
|||||||||
Sbjct: 221 cagagaaag 229
>gb|GL896124.1| Sus scrofa unplaced genomic scaffold chrU_scaffold496
Length = 594
Score = 119 bits (60), Expect = 4e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 915 ccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaatggacgccca 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 117 ccgagtggaccttcttcagctgatgattaactcccagaattccaaagaaatggaccccca 58
Query: 975 taaa 978
||||
Sbjct: 57 taaa 54
>gb|GL896175.1| Sus scrofa unplaced genomic scaffold chrU_scaffold541
Length = 2699
Score = 101 bits (51), Expect = 9e-19
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 339 tgatggtcggcagcccgtgttggctatcaccgatccagacatgatcaaaacggtcctcgt 398
||||||||||||||| || ||||| |||| |||||| ||||||||||| | ||||| ||
Sbjct: 1910 tgatggtcggcagcctctgctggctgtcacagatccaaacatgatcaaatcagtcctagt 1851
Query: 399 gaaagaatgttattctgtcttcacaaaccgg 429
||| |||||||||||||||||||||||||||
Sbjct: 1850 gaaggaatgttattctgtcttcacaaaccgg 1820
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,345,101
Number of extensions: 338
Number of successful extensions: 338
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 24
Length of query: 1234
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1213
Effective length of database: 2,808,413,156
Effective search space: 3406605158228
Effective search space used: 3406605158228
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)