Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069151.1| iron-sulfur cluster assembly enzyme ISCU, mi... 273 2e-73
Alignment gi|NP_001230245.1| iron-sulfur cluster scaffold homolog (E. col... 263 2e-70
>ref|NP_001069151.1| iron-sulfur cluster assembly enzyme ISCU, mitochondrial [Bos
taurus].
Length = 167
Score = 273 bits (698), Expect = 2e-73
Identities = 135/138 (97%), Positives = 137/138 (99%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEK 654
ALADYKLKQEPK GEAEK
Sbjct: 149 ALADYKLKQEPKTGEAEK 166
>ref|NP_001230245.1| iron-sulfur cluster scaffold homolog (E. coli)-like [Bos taurus].
Length = 164
Score = 263 bits (672), Expect = 2e-70
Identities = 131/136 (96%), Positives = 133/136 (97%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARL HKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 29 SAPARLCHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSA ASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSANASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEA 648
ALADYKLKQEPK GEA
Sbjct: 149 ALADYKLKQEPKTGEA 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,869,004
Number of extensions: 1040450
Number of successful extensions: 3247
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3245
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534722.1| PREDICTED: similar to nitrogen fixation cluster... 272 4e-73
Alignment gi|XP_864368.1| PREDICTED: similar to nitrogen fixation cluster... 183 3e-46
Alignment gi|XP_864386.1| PREDICTED: similar to nitrogen fixation cluster... 172 5e-46
>ref|XP_534722.1| PREDICTED: similar to nitrogen fixation cluster-like isoform 1
[Canis familiaris].
Length = 167
Score = 272 bits (696), Expect = 4e-73
Identities = 135/138 (97%), Positives = 137/138 (99%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEK 654
ALADYKLKQEPKK EAEK
Sbjct: 149 ALADYKLKQEPKKEEAEK 166
>ref|XP_864368.1| PREDICTED: similar to nitrogen fixation cluster-like isoform 2
[Canis familiaris].
Length = 95
Score = 183 bits (464), Expect = 3e-46
Identities = 92/94 (97%), Positives = 93/94 (98%)
Frame = +1
Query: 373 MKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLP 552
MKLQIQVD+KGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLP
Sbjct: 1 MKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLP 60
Query: 553 PVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEK 654
PVKLHCSMLAEDAIKAALADYKLKQEPKK EAEK
Sbjct: 61 PVKLHCSMLAEDAIKAALADYKLKQEPKKEEAEK 94
>ref|XP_864386.1| PREDICTED: similar to nitrogen fixation cluster-like isoform 3
[Canis familiaris].
Length = 128
Score = 172 bits (436), Expect(2) = 5e-46
Identities = 83/85 (97%), Positives = 85/85 (100%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKT 495
RFKTFGCGSAIASSSLATEWVKGKT
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKT 113
Score = 31.6 bits (70), Expect(2) = 5e-46
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = +2
Query: 578 WPKMPSRPPWLITN 619
WPKM SR PWLITN
Sbjct: 115 WPKMQSRLPWLITN 128
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,606,339
Number of extensions: 1061006
Number of successful extensions: 3517
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3513
Number of HSP's successfully gapped: 4
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998760.1| iron-sulfur cluster assembly enzyme ISCU, mitoc... 275 4e-74
Alignment gi|NP_055116.1| iron-sulfur cluster assembly enzyme ISCU, mitoc... 255 5e-68
>ref|NP_998760.1| iron-sulfur cluster assembly enzyme ISCU, mitochondrial isoform
ISCU2 precursor [Homo sapiens].
Length = 167
Score = 275 bits (704), Expect = 4e-74
Identities = 136/138 (98%), Positives = 138/138 (100%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEK 654
ALADYKLKQEPKKGEAEK
Sbjct: 149 ALADYKLKQEPKKGEAEK 166
>ref|NP_055116.1| iron-sulfur cluster assembly enzyme ISCU, mitochondrial isoform
ISCU1 [Homo sapiens].
Length = 142
Score = 255 bits (652), Expect = 5e-68
Identities = 126/129 (97%), Positives = 129/129 (100%)
Frame = +1
Query: 268 KVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDARFKTFGCGS 447
+VVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDARFKTFGCGS
Sbjct: 13 QVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGS 72
Query: 448 AIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 627
AIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ
Sbjct: 73 AIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 132
Query: 628 EPKKGEAEK 654
EPKKGEAEK
Sbjct: 133 EPKKGEAEK 141
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,669,412
Number of extensions: 1034147
Number of successful extensions: 3226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3225
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079802.1| iron-sulfur cluster assembly enzyme ISCU, mitoc... 267 1e-71
>ref|NP_079802.1| iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor
[Mus musculus].
Length = 168
Score = 267 bits (683), Expect = 1e-71
Identities = 133/138 (96%), Positives = 135/138 (97%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKT+KNVGTGLVGAPACGDVMKLQIQVD+KGKIVDA
Sbjct: 30 SAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAPACGDVMKLQIQVDEKGKIVDA 89
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 90 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 149
Query: 601 ALADYKLKQEPKKGEAEK 654
ALADYKLKQE KK E EK
Sbjct: 150 ALADYKLKQESKKEEPEK 167
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,386,679
Number of extensions: 862659
Number of successful extensions: 2625
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2624
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362225.1| PREDICTED: iron-sulfur cluster assembly enzy... 343 1e-94
Alignment gi|XP_003359186.1| PREDICTED: iron-sulfur cluster assembly enzy... 280 1e-75
Alignment gi|XP_003359185.1| PREDICTED: iron-sulfur cluster assembly enzy... 280 1e-75
Alignment gi|XP_003359184.1| PREDICTED: iron-sulfur cluster assembly enzy... 280 1e-75
Alignment gi|XP_003359187.1| PREDICTED: iron-sulfur cluster assembly enzy... 233 2e-61
>ref|XP_003362225.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU,
mitochondrial-like [Sus scrofa].
Length = 231
Score = 343 bits (880), Expect = 1e-94
Identities = 182/219 (83%), Positives = 183/219 (83%)
Frame = +1
Query: 1 GGAKARTQAPSGRAQAQSRRDFRGARSKPGANSCTSPSPRSRVRPAQAQVRKMXXXXXXX 180
GGAKARTQAPSGRAQA RRDFRGARSKPGANSCTSPSPRSRVRP A+
Sbjct: 44 GGAKARTQAPSGRAQA--RRDFRGARSKPGANSCTSPSPRSRVRPXPAR----------- 90
Query: 181 XXXXXXXXXXXXXXXXXXXXSAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPA 360
SAPA LYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPA
Sbjct: 91 ------------------ELSAPALLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPA 132
Query: 361 CGDVMKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKE 540
CGDVMKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKE
Sbjct: 133 CGDVMKLQIQVDDKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKE 192
Query: 541 LCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKT 657
LCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKT
Sbjct: 193 LCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKT 231
>ref|XP_003359186.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU,
mitochondrial-like isoform 3 [Sus scrofa].
Length = 167
Score = 280 bits (716), Expect = 1e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEKT 657
ALADYKLKQEPKKGEAEKT
Sbjct: 149 ALADYKLKQEPKKGEAEKT 167
>ref|XP_003359185.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU,
mitochondrial-like isoform 2 [Sus scrofa].
Length = 167
Score = 280 bits (716), Expect = 1e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEKT 657
ALADYKLKQEPKKGEAEKT
Sbjct: 149 ALADYKLKQEPKKGEAEKT 167
>ref|XP_003359184.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 167
Score = 280 bits (716), Expect = 1e-75
Identities = 139/139 (100%), Positives = 139/139 (100%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 88
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 89 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 148
Query: 601 ALADYKLKQEPKKGEAEKT 657
ALADYKLKQEPKKGEAEKT
Sbjct: 149 ALADYKLKQEPKKGEAEKT 167
>ref|XP_003359187.1| PREDICTED: iron-sulfur cluster assembly enzyme ISCU,
mitochondrial-like isoform 4 [Sus scrofa].
Length = 149
Score = 233 bits (593), Expect = 2e-61
Identities = 121/139 (87%), Positives = 121/139 (87%)
Frame = +1
Query: 241 SAPARLYHKKVVDHYENPRNVGSLDKTAKNVGTGLVGAPACGDVMKLQIQVDDKGKIVDA 420
SAPARLYHKKVVDHYENPRNVGSLDKTAKN IQVDDKGKIVDA
Sbjct: 29 SAPARLYHKKVVDHYENPRNVGSLDKTAKN------------------IQVDDKGKIVDA 70
Query: 421 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 600
RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA
Sbjct: 71 RFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKA 130
Query: 601 ALADYKLKQEPKKGEAEKT 657
ALADYKLKQEPKKGEAEKT
Sbjct: 131 ALADYKLKQEPKKGEAEKT 149
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,854,206
Number of extensions: 690420
Number of successful extensions: 2302
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2299
Number of HSP's successfully gapped: 5
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002682
(1119 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1031 0.0
gb|JH118999.1| Sus scrofa unplaced genomic scaffold ChrUScaf4366 511 e-142
Sscrofa_Chr07 72 7e-10
Sscrofa_Chr04 64 2e-07
>Sscrofa_Chr14
|| Length = 153851969
Score = 1031 bits (520), Expect = 0.0
Identities = 523/524 (99%)
Strand = Plus / Minus
Query: 575 tgctggccgaagatgccatcaaggccgccctggctgattacaaactcaagcaagaaccca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761914 tgctggccgaagatgccatcaaggccgccctggctgattacaaactcaagcaagaaccca 44761855
Query: 635 agaaaggagaggccgagaagacatgagtcctagacgaagcccccaccccagtcacacaag 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761854 agaaaggagaggccgagaagacatgagtcctagacgaagcccccaccccagtcacacaag 44761795
Query: 695 ctgctccccctcccacgccgtcaccgcttagcagtcacgtaggtgttcagatgccctctg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761794 ctgctccccctcccacgccgtcaccgcttagcagtcacgtaggtgttcagatgccctctg 44761735
Query: 755 ccctcgccctacaataaaagaaccatgagacccgcacatttgccgttcacatcgtggctc 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761734 ccctcgccctacaataaaagaaccatgagacccgcacatttgccgttcacatcgtggctc 44761675
Query: 815 taatgcaagcacaatacacagtctagttgttctgaatcctgtgggttctcgcagctcacg 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761674 taatgcaagcacaatacacagtctagttgttctgaatcctgtgggttctcgcagctcacg 44761615
Query: 875 tttatagccttaccccagcccatgtctattgtgaattgtgtggagggcccttaaaaccga 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761614 tttatagccttaccccagcccatgtctattgtgaattgtgtggagggcccttaaaaccga 44761555
Query: 935 aatgagtagtgcagtctcccatttgggtggtcaagtactaattttacctgagcctgtttt 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761554 aatgagtagtgcagtctcccatttgggtggtcaagtactaattttacctgagcctgtttt 44761495
Query: 995 ggaaaagcctacccggaaaatgccttggaaagcttgtttggtaggcccaagtattgtaca 1054
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761494 ggaaaagcctacccggagaatgccttggaaagcttgtttggtaggcccaagtattgtaca 44761435
Query: 1055 taacgcagatctgcctttatataataaaagaaagtaagaacgtt 1098
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44761434 taacgcagatctgcctttatataataaaagaaagtaagaacgtt 44761391
Score = 531 bits (268), Expect = e-148
Identities = 271/272 (99%)
Strand = Plus / Minus
Query: 1 ggcggggccaaggcgcggactcaagcaccgagcgggagggcgcaggcgcaaagtcgccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44767993 ggcggggccaaggcgcggactcaagcaccgagcgggagggcgcaggcgcaaagtcgccgg 44767934
Query: 61 gactttagaggggcgcgctccaagccgggtgccaactcgtgcacgagcccctcccctcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44767933 gactttagaggggcgcgctccaagccgggtgccaactcgtgcacgagcccctcccctcgg 44767874
Query: 121 tctcgcgttcggcctgcgcaggcgcaagtccgcaagatggcggcggctggcgccggccgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44767873 tctcgcgttcggcctgcgcaggcgcaagtccgcaagatggcggcggctggcgccggccgt 44767814
Query: 181 ctaaggcgggcggcttcggtcctgctgctcccggtcccgcgcctgcctgctcgggagctg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44767813 ctaaggcgggcggcttccgtcctgctgctcccggtcccgcgcctgcctgctcgggagctg 44767754
Query: 241 tcagctccggctcggctctatcacaagaaggt 272
||||||||||||||||||||||||||||||||
Sbjct: 44767753 tcagctccggctcggctctatcacaagaaggt 44767722
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 269 aggttgttgatcattatgaaaatccccgaaacgtggggtcccttgacaagacagctaaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44766067 aggttgttgatcattatgaaaatccccgaaacgtggggtcccttgacaagacagctaaaa 44766008
Query: 329 atgttggaaccggattggtgggcgctccggcctgtggcgatgtaatgaaattacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44766007 atgttggaaccggattggtgggcgctccggcctgtggcgatgtaatgaaattacag 44765952
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 383 agattcaagtggatgacaaggggaagatcgtggacgccaggtttaaaacatttggctgcg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44765094 agattcaagtggatgacaaggggaagatcgtggacgccaggtttaaaacatttggctgcg 44765035
Query: 443 gttctgcaattgcctccagctcattagccaccgaatgggtaaaggggaagacggt 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44765034 gttctgcaattgcctccagctcattagccaccgaatgggtaaaggggaagacggt 44764980
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 495 ggtggaggaagccttgaccatcaaaaacacagacatcgccaaggagctctgcctgccccc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44763494 ggtggaggaagccttgaccatcaaaaacacagacatcgccaaggagctctgcctgccccc 44763435
Query: 555 ggtgaagctgcactgctcca 574
||||||||||||||||||||
Sbjct: 44763434 ggtgaagctgcactgctcca 44763415
>gb|JH118999.1| Sus scrofa unplaced genomic scaffold ChrUScaf4366
Length = 129222
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Plus
Query: 575 tgctggccgaagatgccatcaaggccgccctggctgattacaaactcaagcaagaaccca 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50213 tgctggccgaagatgccatcaaggccgccctggctgattacaaactcaagcaagaaccca 50272
Query: 635 agaaaggagaggccgagaagacatgagtcctagacgaagcccccaccccagtcacacaag 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50273 agaaaggagaggccgagaagacatgagtcctagacgaagcccccaccccagtcacacaag 50332
Query: 695 ctgctccccctcccacgccgtcaccgcttagcagtcacgtaggtgttcagatgccctctg 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50333 ctgctccccctcccacgccgtcaccgcttagcagtcacgtaggtgttcagatgccctctg 50392
Query: 755 ccctcgccctacaataaaagaaccatgagacccgcacatttgccgttcacatcgtggctc 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50393 ccctcgccctacaataaaagaaccatgagacccgcacatttgccgttcacatcgtggctc 50452
Query: 815 taatgcaagcacaataca 832
||||||||||||||||||
Sbjct: 50453 taatgcaagcacaataca 50470
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Plus
Query: 903 ttgtgaattgtgtggagggcccttaaaaccgaaatgagtagtgcagtctcccatttgggt 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50571 ttgtgaattgtgtggagggcccttaaaaccgaaatgagtagtgcagtctcccatttgggt 50630
Query: 963 ggtcaagtactaattttacctgagcctgttttggaaaagcctacccggaaaatgccttgg 1022
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 50631 ggtcaagtactaattttacctgagcctgttttggaaaagcctacccggagaatgccttgg 50690
Query: 1023 aaagcttgtttggtaggcccaagtattgtacataacgcagatctgcctttatataataaa 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50691 aaagcttgtttggtaggcccaagtattgtacataacgcagatctgcctttatataataaa 50750
Query: 1083 agaaagtaagaacgtt 1098
||||||||||||||||
Sbjct: 50751 agaaagtaagaacgtt 50766
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 269 aggttgttgatcattatgaaaatccccgaaacgtggggtcccttgacaagacagctaaaa 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45895 aggttgttgatcattatgaaaatccccgaaacgtggggtcccttgacaagacagctaaaa 45954
Query: 329 atgttggaaccggattggtgggcgctccggcctgtggcgatgtaatgaaattacag 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45955 atgttggaaccggattggtgggcgctccggcctgtggcgatgtaatgaaattacag 46010
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 383 agattcaagtggatgacaaggggaagatcgtggacgccaggtttaaaacatttggctgcg 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46868 agattcaagtggatgacaaggggaagatcgtggacgccaggtttaaaacatttggctgcg 46927
Query: 443 gttctgcaattgcctccagctcattagccaccgaatgggtaaaggggaagacggt 497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46928 gttctgcaattgcctccagctcattagccaccgaatgggtaaaggggaagacggt 46982
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 52 agtcgccgggactttagaggggcgcgctccaagccgggtgccaactcgtgcacgagcccc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43924 agtcgccgggactttagaggggcgcgctccaagccgggtgccaactcgtgcacgagcccc 43983
Query: 112 tcccctcggtctcgcgttcggcctg 136
|||||||||||||||||||||||||
Sbjct: 43984 tcccctcggtctcgcgttcggcctg 44008
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 495 ggtggaggaagccttgaccatcaaaaacacagacatcgccaaggagctctgcctgccccc 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48554 ggtggaggaagccttgaccatcaaaaacacagacatcgccaaggagctctgcctgccccc 48613
Query: 555 ggtgaagctgcactgctcca 574
||||||||||||||||||||
Sbjct: 48614 ggtgaagctgcactgctcca 48633
Score = 97.6 bits (49), Expect = 1e-17
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 1 ggcggggccaaggcgcggactcaagcaccgagcgggagggcgcaggcgcaaag 53
||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 43771 ggcggggccaaggcgcggactcaagcaccgagcggaagggcgcaggcgcaaag 43823
Score = 87.7 bits (44), Expect = 1e-14
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 225 gcctgctcgggagctgtcagctccggctcggctctatcacaagaaggt 272
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 44010 gcctgctcgggagctgtcagctccggctctgctctatcacaagaaggt 44057
>Sscrofa_Chr07
|| Length = 134764511
Score = 71.9 bits (36), Expect = 7e-10
Identities = 102/124 (82%)
Strand = Plus / Minus
Query: 305 ggtcccttgacaagacagctaaaaatgttggaaccggattggtgggcgctccggcctgtg 364
|||||||| |||||| |||||||||||||||| | ||| ||||| ||||| |||||||
Sbjct: 104063920 ggtcccttaacaagaagtctaaaaatgttggaactgaattagtgggggctccagcctgtg 104063861
Query: 365 gcgatgtaatgaaattacagattcaagtggatgacaaggggaagatcgtggacgccaggt 424
| || ||||| | |||||| | |||| |||||| ||| ||| ||| ||||||| |||||
Sbjct: 104063860 gtgacataatgcagttacaggtccaaggggatgaaaagaggaggattgtggacgtcaggt 104063801
Query: 425 ttaa 428
||||
Sbjct: 104063800 ttaa 104063797
>Sscrofa_Chr04
|| Length = 143465943
Score = 63.9 bits (32), Expect = 2e-07
Identities = 93/112 (83%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 418 gccaggtttaaaacatttggctgcggttctgcaattgcctccagctcattagccaccgaa 477
||||||||||||| ||||||||| ||||||| ||||| | ||||||||||||| |||
Sbjct: 88423975 gccaggtttaaaatatttggctgtggttctgaaattgatccaagctcattagccattgaa 88424034
Query: 478 tgggtaaaggggaagacggtggaggaagccttgaccatcaaaaacacagaca 529
||||| || |||| || || || |||||| |||| ||||||| ||||||||
Sbjct: 88424035 tgggtcaa-aggaaaacagttgaagaagccatgactatcaaaagcacagaca 88424085
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,999,863
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 15
Length of query: 1119
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1098
Effective length of database: 2,808,413,156
Effective search space: 3083637645288
Effective search space used: 3083637645288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)