Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776715.1| alpha-crystallin B chain [Bos taurus]. 356 3e-98
Alignment gi|NP_776714.1| alpha-crystallin A chain [Bos taurus]. 189 4e-48
Alignment gi|NP_001069495.1| heat shock protein beta-6 [Bos taurus]. 145 9e-35
Alignment gi|NP_001020740.1| heat shock protein beta-1 [Bos taurus]. 122 1e-27
Alignment gi|NP_001091850.1| heat shock 27kDa protein 2 [Bos taurus]. 112 7e-25
Alignment gi|NP_001014955.1| heat shock protein beta-8 [Bos taurus]. 81 2e-15
Alignment gi|NP_001040035.1| heat shock protein beta-3 [Bos taurus]. 62 1e-09
>ref|NP_776715.1| alpha-crystallin B chain [Bos taurus].
Length = 175
Score = 356 bits (914), Expect = 3e-98
Identities = 172/175 (98%), Positives = 173/175 (98%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITREEKPAVTAAPKK 175
>ref|NP_776714.1| alpha-crystallin A chain [Bos taurus].
Length = 173
Score = 189 bits (481), Expect = 4e-48
Identities = 96/173 (55%), Positives = 129/173 (74%), Gaps = 5/173 (2%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAPS 432
MDIAI HPW +R PF+ PSRLFDQFFGE L E DL P S+++SP+Y + S R
Sbjct: 1 MDIAIQHPWFKRTLGPFY-PSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQ--SLFRTV- 56
Query: 433 WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFH 612
+D+G+SE+R ++D+F + LDVKHFSPE+L VKV D +E+HGKH ERQD+HG+ISREFH
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFH 115
Query: 613 RKYRIPADVDPLTITSSLSSDGVLTVNGPR----RQASGPERTIPITREEKPA 759
R+YR+P++VD ++ SLS+DG+LT +GP+ A ER IP++REEKP+
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVSREEKPS 168
>ref|NP_001069495.1| heat shock protein beta-6 [Bos taurus].
Length = 164
Score = 145 bits (366), Expect = 9e-35
Identities = 75/162 (46%), Positives = 103/162 (63%), Gaps = 4/162 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+++ W+RR P +P RLFDQ FGE LLE++L +L+P+Y R PS
Sbjct: 5 VSVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPAALAPYYLRAPSVALPT 64
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ + T + FSV LDVKHFSPEE+ VKV+GD +EVH +HEER DEHG+I+REF
Sbjct: 65 AQVST-------DPGHFSVLLDVKHFSPEEIAVKVVGDHVEVHARHEERPDEHGYIAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIP 735
HR+YR+P VDP +TS+LS +GVL++ A P ++ P
Sbjct: 118 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPAPAQAPLQSPP 159
>ref|NP_001020740.1| heat shock protein beta-1 [Bos taurus].
Length = 204
Score = 122 bits (305), Expect = 1e-27
Identities = 74/163 (45%), Positives = 98/163 (60%), Gaps = 12/163 (7%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFR--PPSFLRAPSW-------I 438
R ++P HS RLFDQ FG L + S S P Y R P + + P++ +
Sbjct: 20 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRALPAAAIEGPAYNRALSRQL 77
Query: 439 DTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRK 618
+G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHG+ISR F RK
Sbjct: 78 SSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGYISRCFTRK 137
Query: 619 YRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPIT 741
Y +P VDP ++SSLS +G LTV P+ E TIP+T
Sbjct: 138 YTLPPGVDPTLVSSSLSPEGTLTVEAPLPKSATQSAEITIPVT 180
>ref|NP_001091850.1| heat shock 27kDa protein 2 [Bos taurus].
Length = 182
Score = 112 bits (281), Expect = 7e-25
Identities = 62/164 (37%), Positives = 96/164 (58%), Gaps = 2/164 (1%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ T +
Sbjct: 1 MSGRSVPHAHPATAE------------YEFANPSRLGEQRFGEGLLPEEIL-TPTLYHGY 47
Query: 397 YFRPPSFLRAPSWIDT--GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHE 570
Y RP + AP + G SE+RL + +F +LDV HF+P+E+ V+ + +++EV +H
Sbjct: 48 YVRPRA---APGGEGSRAGASELRLSEGKFQASLDVSHFTPDEVTVRTVDNLLEVSARHP 104
Query: 571 ERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
+R D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 105 QRLDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
>ref|NP_001014955.1| heat shock protein beta-8 [Bos taurus].
Length = 196
Score = 81.3 bits (199), Expect = 2e-15
Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Frame = +1
Query: 286 RRPFFPFHSPSRLFDQFFGEHLLESDL--------FPASTSLSPFYFRPPSFLRAPSWID 441
R PF SRL D FG DL P +S P R R P+ +
Sbjct: 18 RDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAWPGTLRSGMVPRGPTAMT 77
Query: 442 T------GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR 603
G S + + V ++V F PEEL VK +EV GKHEE+Q E G +S+
Sbjct: 78 RFGVPAEGRSPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSK 137
Query: 604 EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
F +K ++PA+VDP+T+ +SLS +G+L + P+
Sbjct: 138 NFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQ 170
>ref|NP_001040035.1| heat shock protein beta-3 [Bos taurus].
Length = 149
Score = 62.0 bits (149), Expect = 1e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +1
Query: 469 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPL 648
+ RF V LDV F PE++ ++ + + +H R DEHGFISR F R+Y++P ++
Sbjct: 67 ESRFQVLLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGIETK 126
Query: 649 TITSSLSSDGVLTV 690
+++ L DG+L V
Sbjct: 127 DLSAILCHDGILVV 140
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,955,248
Number of extensions: 1788131
Number of successful extensions: 6548
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6518
Number of HSP's successfully gapped: 7
Length of query: 510
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 403
Effective length of database: 14,140,958
Effective search space: 5698806074
Effective search space used: 5698806074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_862288.1| PREDICTED: similar to Alpha crystallin B chain ... 355 8e-98
Alignment gi|XP_536576.1| PREDICTED: similar to Alpha crystallin B chain ... 355 8e-98
Alignment gi|XP_862258.1| PREDICTED: similar to Alpha crystallin B chain ... 344 1e-94
Alignment gi|XP_862156.1| PREDICTED: similar to Alpha crystallin B chain ... 282 9e-84
Alignment gi|XP_862208.1| PREDICTED: similar to Alpha crystallin B chain ... 215 8e-56
Alignment gi|XP_862187.1| PREDICTED: similar to Alpha crystallin B chain ... 215 8e-56
Alignment gi|NP_001074367.1| alpha-crystallin A chain [Canis lupus famili... 192 1e-48
Alignment gi|XP_541688.1| PREDICTED: similar to heat shock protein, alpha... 145 1e-34
Alignment gi|NP_001003295.1| heat shock protein beta-1 [Canis lupus famil... 119 1e-26
Alignment gi|XP_854111.1| PREDICTED: similar to heat shock 27kD protein 2... 114 2e-25
>ref|XP_862288.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 6 [Canis
familiaris].
Length = 175
Score = 355 bits (910), Expect = 8e-98
Identities = 171/175 (97%), Positives = 172/175 (98%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP STSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITREEKPAVTAAPKK 175
>ref|XP_536576.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 1 [Canis
familiaris].
Length = 175
Score = 355 bits (910), Expect = 8e-98
Identities = 171/175 (97%), Positives = 172/175 (98%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP STSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITREEKPAVTAAPKK 175
>ref|XP_862258.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 5 [Canis
familiaris].
Length = 192
Score = 344 bits (882), Expect = 1e-94
Identities = 171/192 (89%), Positives = 172/192 (89%), Gaps = 17/192 (8%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP STSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSE-----------------MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGK 564
IDTGLSE MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGK
Sbjct: 61 IDTGLSEHLRHLYVHQGLRNTRLLMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGK 120
Query: 565 HEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITR 744
HEERQDEHGFISREFHRKYRIPADVDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITR
Sbjct: 121 HEERQDEHGFISREFHRKYRIPADVDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITR 180
Query: 745 EEKPAVTAAPKK 780
EEKPAVTAAPKK
Sbjct: 181 EEKPAVTAAPKK 192
>ref|XP_862156.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) (Rosenthal fiber component)
(Heat-shock protein beta-5) (HspB5) isoform 2 [Canis
familiaris].
Length = 161
Score = 282 bits (721), Expect(2) = 9e-84
Identities = 134/137 (97%), Positives = 134/137 (97%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP STSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSL 666
KYRIPADVDPL ITSSL
Sbjct: 121 KYRIPADVDPLAITSSL 137
Score = 48.5 bits (114), Expect(2) = 9e-84
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = +3
Query: 762 HCSPQEVDALPLTAFFKTRNLPHQ 833
HCSPQE+DAL LTAFFKTR PHQ
Sbjct: 138 HCSPQEIDALSLTAFFKTRKFPHQ 161
>ref|XP_862208.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) isoform 4 [Canis familiaris].
Length = 108
Score = 215 bits (548), Expect = 8e-56
Identities = 106/108 (98%), Positives = 107/108 (99%)
Frame = +1
Query: 457 MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 636
MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD
Sbjct: 1 MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 637 VDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
VDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITREEKPAVTAAPKK
Sbjct: 61 VDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITREEKPAVTAAPKK 108
>ref|XP_862187.1| PREDICTED: similar to Alpha crystallin B chain
(Alpha(B)-crystallin) isoform 3 [Canis familiaris].
Length = 108
Score = 215 bits (548), Expect = 8e-56
Identities = 106/108 (98%), Positives = 107/108 (99%)
Frame = +1
Query: 457 MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 636
MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD
Sbjct: 1 MRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPAD 60
Query: 637 VDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
VDPL ITSSLSSDGVLTVNGPR+QASGPERTIPITREEKPAVTAAPKK
Sbjct: 61 VDPLAITSSLSSDGVLTVNGPRKQASGPERTIPITREEKPAVTAAPKK 108
>ref|NP_001074367.1| alpha-crystallin A chain [Canis lupus familiaris].
Length = 173
Score = 192 bits (487), Expect = 1e-48
Identities = 97/173 (56%), Positives = 130/173 (75%), Gaps = 5/173 (2%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAPS 432
MDIAI HPW +R PF+ PSRLFDQFFGE L E DL P S+++SP+Y + S R
Sbjct: 1 MDIAIQHPWFKRALGPFY-PSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQ--SLFRTV- 56
Query: 433 WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFH 612
+D+G+SE+R ++D+F + LDVKHFSPE+L VKVL D +E+HGKH ERQD+HG+ISREFH
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVLEDFVEIHGKHNERQDDHGYISREFH 115
Query: 613 RKYRIPADVDPLTITSSLSSDGVLTVNGPR----RQASGPERTIPITREEKPA 759
R+YR+P++VD ++ SLS+DG+LT +GP+ A ER IP++REEKP+
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFSGPKVPSGVDAGHSERAIPVSREEKPS 168
>ref|XP_541688.1| PREDICTED: similar to heat shock protein, alpha-crystallin-related,
B6 [Canis familiaris].
Length = 162
Score = 145 bits (365), Expect = 1e-34
Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 4/158 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P +P RLFDQ FGE LLE++L +L+P+Y R PS
Sbjct: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPAALAPYYLRAPS----- 59
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ +++ E FSV LDVKHFSPEE+ VKV+GD +EVH +HEER DEHG+I+REF
Sbjct: 60 --VALPTAQVPAEPGHFSVLLDVKHFSPEEIAVKVVGDHVEVHARHEERPDEHGYIAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPE 723
HR+YR+P+ VDP +TS+LS +GVL++ A P+
Sbjct: 118 HRRYRLPSGVDPAAVTSALSPEGVLSIQAAPAAAQAPQ 155
>ref|NP_001003295.1| heat shock protein beta-1 [Canis lupus familiaris].
Length = 209
Score = 119 bits (297), Expect = 1e-26
Identities = 76/178 (42%), Positives = 99/178 (55%), Gaps = 20/178 (11%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP----------------PSF 417
R ++P HS RLFDQ FG L + S P Y RP P++
Sbjct: 20 RDWYPAHS--RLFDQAFGLPRLPEEWAQWFGHSGWPGYVRPIPPAVEGPAAAAAAAAPAY 77
Query: 418 LRAPS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGF 594
RA S + +G+SE+R DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHG+
Sbjct: 78 SRALSRQLSSGVSEIRQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGY 137
Query: 595 ISREFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEKPAV 762
ISR KY +P VDP ++SSLS +G LTV P+ E TIP+T E + +
Sbjct: 138 ISRRLTPKYTLPPGVDPTLVSSSLSPEGTLTVEAPMPKPATQSAEITIPVTFEARAQI 195
>ref|XP_854111.1| PREDICTED: similar to heat shock 27kD protein 2 [Canis familiaris].
Length = 182
Score = 114 bits (286), Expect = 2e-25
Identities = 61/162 (37%), Positives = 93/162 (57%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ + +L
Sbjct: 1 MSGRSVPHAHPATTE------------YEFANPSRLGEQRFGEGLLPEEIL--TPTLYHG 46
Query: 397 YFRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 576
Y+ P RA G SE+RL +F LDV HF+P+E+ V+ + +++EV +H +R
Sbjct: 47 YYVRPRAARAAEGSRAGASELRLRNGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQR 106
Query: 577 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 107 LDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,427,451
Number of extensions: 1806570
Number of successful extensions: 6652
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 6628
Number of HSP's successfully gapped: 15
Length of query: 510
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 403
Effective length of database: 15,307,552
Effective search space: 6168943456
Effective search space used: 6168943456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001876.1| alpha-crystallin B chain [Homo sapiens]. 353 2e-97
Alignment gi|NP_000385.1| alpha-crystallin A chain [Homo sapiens]. 190 3e-48
Alignment gi|NP_653218.1| heat shock protein beta-6 [Homo sapiens]. 144 2e-34
Alignment gi|NP_001531.1| heat shock protein beta-1 [Homo sapiens]. 123 5e-28
Alignment gi|NP_001532.1| heat shock protein beta-2 [Homo sapiens]. 112 1e-24
Alignment gi|NP_055180.1| heat shock protein beta-8 [Homo sapiens]. 80 5e-15
Alignment gi|NP_006299.1| heat shock protein beta-3 [Homo sapiens]. 61 3e-09
Alignment gi|NP_055239.1| heat shock protein beta-7 [Homo sapiens]. 53 7e-07
>ref|NP_001876.1| alpha-crystallin B chain [Homo sapiens].
Length = 175
Score = 353 bits (907), Expect = 2e-97
Identities = 170/175 (97%), Positives = 171/175 (97%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP STSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
DTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 FDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPLTITSSLSSDGVLTVNGPR+Q SGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVTAAPKK 175
>ref|NP_000385.1| alpha-crystallin A chain [Homo sapiens].
Length = 173
Score = 190 bits (482), Expect = 3e-48
Identities = 98/178 (55%), Positives = 132/178 (74%), Gaps = 5/178 (2%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAPS 432
MD+ I HPW +R PF+ PSRLFDQFFGE L E DL P S+++SP+Y + S R
Sbjct: 1 MDVTIQHPWFKRTLGPFY-PSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQ--SLFRTV- 56
Query: 433 WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFH 612
+D+G+SE+R ++D+F + LDVKHFSPE+L VKV D +E+HGKH ERQD+HG+ISREFH
Sbjct: 57 -LDSGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQDDFVEIHGKHNERQDDHGYISREFH 115
Query: 613 RKYRIPADVDPLTITSSLSSDGVLTVNGPRRQ----ASGPERTIPITREEKPAVTAAP 774
R+YR+P++VD ++ SLS+DG+LT GP+ Q A+ ER IP++REEKP T+AP
Sbjct: 116 RRYRLPSNVDQSALSCSLSADGMLTFCGPKIQTGLDATHAERAIPVSREEKP--TSAP 171
>ref|NP_653218.1| heat shock protein beta-6 [Homo sapiens].
Length = 160
Score = 144 bits (364), Expect = 2e-34
Identities = 73/157 (46%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P +P RLFDQ FGE LLE++L T+L+P+Y R PS
Sbjct: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPTTLAPYYLRAPS----- 59
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ ++++ + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHGF++REF
Sbjct: 60 --VALPVAQVPTDPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGFVAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGP 720
HR+YR+P VDP +TS+LS +GVL++ A P
Sbjct: 118 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPASAQAP 154
>ref|NP_001531.1| heat shock protein beta-1 [Homo sapiens].
Length = 205
Score = 123 bits (308), Expect = 5e-28
Identities = 76/171 (44%), Positives = 99/171 (57%), Gaps = 17/171 (9%)
Frame = +1
Query: 292 PFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP-------------PSFLRAP 429
PF ++ SRLFDQ FG L + S P Y RP P++ RA
Sbjct: 18 PFRDWYPHSRLFDQAFGLPRLPEEWSQWLGGSSWPGYVRPLPPAAIESPAVAAPAYSRAL 77
Query: 430 S-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISRE 606
S + +G+SE+R DR+ V+LDV HF+P+EL VK V+E+ GKHEERQDEHG+ISR
Sbjct: 78 SRQLSSGVSEIRHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHEERQDEHGYISRC 137
Query: 607 FHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 753
F RKY +P VDP ++SSLS +G LTV P+ E TIP+T E +
Sbjct: 138 FTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMPKLATQSNEITIPVTFESR 188
>ref|NP_001532.1| heat shock protein beta-2 [Homo sapiens].
Length = 182
Score = 112 bits (279), Expect = 1e-24
Identities = 60/162 (37%), Positives = 93/162 (57%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ + +L
Sbjct: 1 MSGRSVPHAHPATAE------------YEFANPSRLGEQRFGEGLLPEEIL--TPTLYHG 46
Query: 397 YFRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 576
Y+ P A G SE+RL + +F LDV HF+P+E+ V+ + +++EV +H +R
Sbjct: 47 YYVRPRAAPAGEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQR 106
Query: 577 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 107 LDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
>ref|NP_055180.1| heat shock protein beta-8 [Homo sapiens].
Length = 196
Score = 80.1 bits (196), Expect = 5e-15
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Frame = +1
Query: 256 MDIAIHHPW-IRR-PFFPFHSPSRLFDQFFGEHLLESDL--------FPASTSLSPFYFR 405
M + H+P +RR PF SRL D FG DL P +S P R
Sbjct: 6 MPFSCHYPSRLRRDPFRDSPLSSRLLDDGFGMDPFPDDLTASWPDWALPRLSSAWPGTLR 65
Query: 406 PPSFLRAPSWIDT------GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKH 567
R P+ G + + + V ++V F PEEL VK +EV GKH
Sbjct: 66 SGMVPRGPTATARFGVPAEGRTPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKH 125
Query: 568 EERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
EE+Q E G +S+ F +K ++PA+VDP+T+ +SLS +G+L + P+
Sbjct: 126 EEKQQEGGIVSKNFTKKIQLPAEVDPVTVFASLSPEGLLIIEAPQ 170
>ref|NP_006299.1| heat shock protein beta-3 [Homo sapiens].
Length = 150
Score = 60.8 bits (146), Expect = 3e-09
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +1
Query: 469 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPL 648
K F + LDV F PE++ ++ + + +H R DEHGFISR F R+Y++P V+
Sbjct: 68 KSHFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVEIK 127
Query: 649 TITSSLSSDGVLTV 690
+++ L DG+L V
Sbjct: 128 DLSAVLCHDGILVV 141
>ref|NP_055239.1| heat shock protein beta-7 [Homo sapiens].
Length = 170
Score = 53.1 bits (126), Expect = 7e-07
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +1
Query: 445 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 624
G ++ D + +DV+ FSPE++ V + IEV E+ G + F K +
Sbjct: 71 GAGNIKTLGDAYEFAVDVRDFSPEDIIVTTSNNHIEVRA---EKLAADGTVMNTFAHKCQ 127
Query: 625 IPADVDPLTITSSLSSDGVLTVNGPR 702
+P DVDP ++TS+L DG LT+ R
Sbjct: 128 LPEDVDPTSVTSALREDGSLTIRARR 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,754,425
Number of extensions: 1730377
Number of successful extensions: 6132
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6101
Number of HSP's successfully gapped: 8
Length of query: 510
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 403
Effective length of database: 14,770,016
Effective search space: 5952316448
Effective search space used: 5952316448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034094.1| alpha-crystallin B chain [Mus musculus]. 349 4e-96
Alignment gi|NP_038529.1| alpha-crystallin A chain [Mus musculus]. 179 5e-45
Alignment gi|NP_001012401.1| heat shock protein beta-6 [Mus musculus]. 139 8e-33
Alignment gi|NP_038588.2| heat shock protein beta-1 [Mus musculus]. 125 1e-28
Alignment gi|NP_077761.3| heat shock protein beta-2 isoform 1 [Mus muscul... 115 9e-26
Alignment gi|NP_109629.1| heat shock protein beta-8 [Mus musculus]. 79 1e-14
Alignment gi|NP_064344.1| heat shock protein beta-3 [Mus musculus]. 64 4e-10
Alignment gi|NP_038896.2| heat shock protein beta-7 [Mus musculus]. 53 6e-07
>ref|NP_034094.1| alpha-crystallin B chain [Mus musculus].
Length = 175
Score = 349 bits (895), Expect = 4e-96
Identities = 168/175 (96%), Positives = 170/175 (97%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLF +TSLSPFY RPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFSTATSLSPFYLRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPLTITSSLSSDGVLTVNGPR+Q SGPERTIPITREEKPAV AAPKK
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREEKPAVAAAPKK 175
>ref|NP_038529.1| alpha-crystallin A chain [Mus musculus].
Length = 196
Score = 179 bits (454), Expect = 5e-45
Identities = 96/196 (48%), Positives = 130/196 (66%), Gaps = 28/196 (14%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAPS 432
MD+ I HPW +R PF+ PSRLFDQFFGE L E DL P S+++SP+Y + S R
Sbjct: 1 MDVTIQHPWFKRALGPFY-PSRLFDQFFGEGLFEYDLLPFLSSTISPYYRQ--SLFRTV- 56
Query: 433 WIDTGLSEM-----------------------RLEKDRFSVNLDVKHFSPEELKVKVLGD 543
+D+G+SE+ R ++D+F + LDVKHFSPE+L VKVL D
Sbjct: 57 -LDSGISELMTHMWFVMHQPHAGNPKNNPVKVRSDRDKFVIFLDVKHFSPEDLTVKVLED 115
Query: 544 VIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQ----A 711
+E+HGKH ERQD+HG+ISREFHR+YR+P++VD ++ SLS+DG+LT +GP+ Q A
Sbjct: 116 FVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKVQSGLDA 175
Query: 712 SGPERTIPITREEKPA 759
ER IP++REEKP+
Sbjct: 176 GHSERAIPVSREEKPS 191
>ref|NP_001012401.1| heat shock protein beta-6 [Mus musculus].
Length = 162
Score = 139 bits (349), Expect = 8e-33
Identities = 71/147 (48%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFP---FHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P F +P RLFDQ FGE LLE++L +++P+Y R PS
Sbjct: 5 VPVQPSWLRRASAPLPGFSAPGRLFDQRFGEGLLEAELASLCPAAIAPYYLRAPSVALPT 64
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ + T + FSV LDVKHF PEE+ VKV+ D +EVH +HEER DEHGFI+REF
Sbjct: 65 AQVST-------DSGYFSVLLDVKHFLPEEISVKVVDDHVEVHARHEERPDEHGFIAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTV 690
HR+YR+P VDP +TS+LS +GVL++
Sbjct: 118 HRRYRLPPGVDPAAVTSALSPEGVLSI 144
>ref|NP_038588.2| heat shock protein beta-1 [Mus musculus].
Length = 209
Score = 125 bits (313), Expect = 1e-28
Identities = 78/178 (43%), Positives = 103/178 (57%), Gaps = 20/178 (11%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDL---------------FPASTSLSP--FYFRPPSF 417
R ++P HS RLFDQ FG L + PA+T+ P P+F
Sbjct: 20 RDWYPAHS--RLFDQAFGVPRLPDEWSQWFSAAGWPGYVRPLPAATAEGPAAVTLAAPAF 77
Query: 418 LRAPS-WIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGF 594
RA + + +G+SE+R DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHG+
Sbjct: 78 SRALNRQLSSGVSEIRQTADRWRVSLDVNHFAPEELTVKTKEGVVEITGKHEERQDEHGY 137
Query: 595 ISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQA--SGPERTIPITREEKPAV 762
ISR F RKY +P VDP ++SSLS +G LTV P +A E TIP+T E + +
Sbjct: 138 ISRCFTRKYTLPPGVDPTLVSSSLSPEGTLTVEAPLPKAVTQSAEITIPVTFEARAQI 195
>ref|NP_077761.3| heat shock protein beta-2 isoform 1 [Mus musculus].
Length = 182
Score = 115 bits (288), Expect = 9e-26
Identities = 61/162 (37%), Positives = 94/162 (58%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ + +L
Sbjct: 1 MSGRTVPHAHPATAE------------YEFANPSRLGEQRFGEGLLPEEIL--TPTLYHG 46
Query: 397 YFRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 576
Y+ P RA G SE+RL + +F LDV HF+P+E+ V+ + +++EV +H +R
Sbjct: 47 YYVRPRAARAGEGARAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQR 106
Query: 577 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 107 LDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
>ref|NP_109629.1| heat shock protein beta-8 [Mus musculus].
Length = 196
Score = 78.6 bits (192), Expect = 1e-14
Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Frame = +1
Query: 286 RRPFFPFHSPSRLFDQFFGEHLLESDL--------FPASTSLSPFYFRPPSFLRAPSWID 441
R PF SRL D FG DL P +S P R R P
Sbjct: 18 RDPFRDSPLSSRLLDDGFGMDPFPDDLTAPWPEWALPRLSSAWPGTLRSGMVPRGPPATA 77
Query: 442 T------GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISR 603
G S + + V ++V F PEEL VK +EV GKHEE+Q E G +S+
Sbjct: 78 RFGVPAEGRSPPPFPGEPWKVCVNVHSFKPEELMVKTKDGYVEVSGKHEEKQQEGGIVSK 137
Query: 604 EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
F +K ++PA+VDP T+ +SLS +G+L + P+
Sbjct: 138 NFTKKIQLPAEVDPATVFASLSPEGLLIIEAPQ 170
>ref|NP_064344.1| heat shock protein beta-3 [Mus musculus].
Length = 154
Score = 63.5 bits (153), Expect = 4e-10
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +1
Query: 469 KDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPL 648
K RF + LDV F PE++ ++ + + +H R DEHGFISR F R+Y++P V+
Sbjct: 72 KSRFQILLDVVQFLPEDIIIQTFEGWLLIKAQHGTRMDEHGFISRSFTRQYKLPDGVETK 131
Query: 649 TITSSLSSDGVLTV 690
+++ L DG+L V
Sbjct: 132 DLSAILCHDGILVV 145
>ref|NP_038896.2| heat shock protein beta-7 [Mus musculus].
Length = 169
Score = 53.1 bits (126), Expect = 6e-07
Identities = 28/86 (32%), Positives = 45/86 (52%)
Frame = +1
Query: 445 GLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYR 624
G ++ D + +D++ FSPE++ V + IEV E+ G + F K +
Sbjct: 70 GQGNIKTLGDAYEFTVDMRDFSPEDIIVTTFNNHIEVRA---EKLAADGTVMNTFAHKCQ 126
Query: 625 IPADVDPLTITSSLSSDGVLTVNGPR 702
+P DVDP ++TS+L DG LT+ R
Sbjct: 127 LPEDVDPTSVTSALREDGSLTIRARR 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,242,848
Number of extensions: 1418689
Number of successful extensions: 5098
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5072
Number of HSP's successfully gapped: 8
Length of query: 510
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 404
Effective length of database: 12,433,743
Effective search space: 5023232172
Effective search space used: 5023232172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357342.1| PREDICTED: alpha-crystallin B chain [Sus scr... 362 e-100
Alignment gi|XP_003357339.1| PREDICTED: alpha-crystallin B chain-like [Su... 362 e-100
Alignment gi|XP_003355906.1| PREDICTED: hypothetical protein LOC494560 [S... 144 2e-34
Alignment gi|XP_003127107.1| PREDICTED: hypothetical protein LOC494560 [S... 144 2e-34
Alignment gi|XP_003127108.1| PREDICTED: hypothetical protein LOC494560 [S... 141 1e-33
Alignment gi|XP_003354542.1| PREDICTED: heat shock protein beta-1-like is... 124 2e-28
Alignment gi|XP_003354541.1| PREDICTED: heat shock protein beta-1-like is... 124 2e-28
Alignment gi|NP_001007519.1| heat shock protein beta-1 [Sus scrofa]. 124 2e-28
Alignment gi|XP_003129916.2| PREDICTED: heat shock protein beta-2-like [S... 113 2e-25
Alignment gi|XP_003357340.1| PREDICTED: heat shock protein beta-2-like [S... 113 2e-25
>ref|XP_003357342.1| PREDICTED: alpha-crystallin B chain [Sus scrofa].
Length = 175
Score = 362 bits (928), Expect = e-100
Identities = 175/175 (100%), Positives = 175/175 (100%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 175
>ref|XP_003357339.1| PREDICTED: alpha-crystallin B chain-like [Sus scrofa].
Length = 175
Score = 362 bits (928), Expect = e-100
Identities = 175/175 (100%), Positives = 175/175 (100%)
Frame = +1
Query: 256 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 435
MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW
Sbjct: 1 MDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPFYFRPPSFLRAPSW 60
Query: 436 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 615
IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR
Sbjct: 61 IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHR 120
Query: 616 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 780
KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK
Sbjct: 121 KYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGPERTIPITREEKPAVTAAPKK 175
>ref|XP_003355906.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 163
Score = 144 bits (362), Expect = 2e-34
Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P +P RLFDQ FGE LLE++L +L+P+Y R PS
Sbjct: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPATLAPYYLRAPSVALPT 64
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ + T + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHG+I+REF
Sbjct: 65 AQVPT-------DPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGP 720
HR+YR+P VDP +TS+LS +GVL++ A GP
Sbjct: 118 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPAPAQGP 154
>ref|XP_003127107.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 163
Score = 144 bits (362), Expect = 2e-34
Identities = 74/157 (47%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P +P RLFDQ FGE LLE++L +L+P+Y R PS
Sbjct: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPATLAPYYLRAPSVALPT 64
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
+ + T + FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHG+I+REF
Sbjct: 65 AQVPT-------DPGHFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREF 117
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGP 720
HR+YR+P VDP +TS+LS +GVL++ A GP
Sbjct: 118 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPAPAQGP 154
>ref|XP_003127108.1| PREDICTED: hypothetical protein LOC494560 [Sus scrofa].
Length = 156
Score = 141 bits (355), Expect = 1e-33
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 4/157 (2%)
Frame = +1
Query: 262 IAIHHPWIRRPFFPF---HSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRPPSFLRAP 429
+ + W+RR P +P RLFDQ FGE LLE++L +L+P+Y R PS P
Sbjct: 5 VPVQPSWLRRASAPLPGLSAPGRLFDQRFGEGLLEAELAALCPATLAPYYLRAPSVPTDP 64
Query: 430 SWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREF 609
FSV LDVKHFSPEE+ VKV+G+ +EVH +HEER DEHG+I+REF
Sbjct: 65 G--------------HFSVLLDVKHFSPEEIAVKVVGEHVEVHARHEERPDEHGYIAREF 110
Query: 610 HRKYRIPADVDPLTITSSLSSDGVLTVNGPRRQASGP 720
HR+YR+P VDP +TS+LS +GVL++ A GP
Sbjct: 111 HRRYRLPPGVDPAAVTSALSPEGVLSIQAAPAPAQGP 147
>ref|XP_003354542.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Sus scrofa].
Length = 207
Score = 124 bits (310), Expect = 2e-28
Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 18/173 (10%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP--------PSFLRAPSW-- 435
R ++P HS RLFDQ FG L + S S P Y RP P+ + AP++
Sbjct: 20 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLPPPAIEGPAAVAAPAYSR 77
Query: 436 -----IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 600
+ +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 78 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 137
Query: 601 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 753
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 138 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 190
>ref|XP_003354541.1| PREDICTED: heat shock protein beta-1-like isoform 1 [Sus scrofa].
Length = 269
Score = 124 bits (310), Expect = 2e-28
Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 18/173 (10%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP--------PSFLRAPSW-- 435
R ++P HS RLFDQ FG L + S S P Y RP P+ + AP++
Sbjct: 82 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLPPPAIEGPAAVAAPAYSR 139
Query: 436 -----IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 600
+ +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 140 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 199
Query: 601 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 753
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 200 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 252
>ref|NP_001007519.1| heat shock protein beta-1 [Sus scrofa].
Length = 207
Score = 124 bits (310), Expect = 2e-28
Identities = 77/173 (44%), Positives = 102/173 (58%), Gaps = 18/173 (10%)
Frame = +1
Query: 289 RPFFPFHSPSRLFDQFFGEHLLESDLFP-ASTSLSPFYFRP--------PSFLRAPSW-- 435
R ++P HS RLFDQ FG L + S S P Y RP P+ + AP++
Sbjct: 20 RDWYPAHS--RLFDQAFGLPRLPEEWSQWLSHSGWPGYVRPLPPPAIEGPAAVAAPAYSR 77
Query: 436 -----IDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFIS 600
+ +G+SE++ DR+ V+LDV HF+PEEL VK V+E+ GKHEERQDEHGFIS
Sbjct: 78 LLSRQLSSGVSEIQQTADRWRVSLDVNHFAPEELTVKTKDGVVEITGKHEERQDEHGFIS 137
Query: 601 REFHRKYRIPADVDPLTITSSLSSDGVLTVNG--PRRQASGPERTIPITREEK 753
R F RKY +P VDP ++SSLS +G L+V P+ E TIP+T E +
Sbjct: 138 RCFTRKYTLPPGVDPTQVSSSLSPEGTLSVEAPLPKPATQSAEITIPVTFEAR 190
>ref|XP_003129916.2| PREDICTED: heat shock protein beta-2-like [Sus scrofa].
Length = 182
Score = 113 bits (283), Expect = 2e-25
Identities = 60/162 (37%), Positives = 94/162 (58%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ + +L
Sbjct: 1 MSGRSVPHAHPATTE------------YEFANPSRLGEQRFGEGLLPEEIL--TPTLYHG 46
Query: 397 YFRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 576
Y+ P +A G SE+RL + +F LDV HF+P+E+ V+ + +++EV +H +R
Sbjct: 47 YYVRPRAAQAAEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQR 106
Query: 577 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 107 LDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
>ref|XP_003357340.1| PREDICTED: heat shock protein beta-2-like [Sus scrofa].
Length = 182
Score = 113 bits (283), Expect = 2e-25
Identities = 60/162 (37%), Positives = 94/162 (58%)
Frame = +1
Query: 217 LTGQLTLYIHPAAMDIAIHHPWIRRPFFPFHSPSRLFDQFFGEHLLESDLFPASTSLSPF 396
++G+ + HPA + + F +PSRL +Q FGE LL ++ + +L
Sbjct: 1 MSGRSVPHAHPATTE------------YEFANPSRLGEQRFGEGLLPEEIL--TPTLYHG 46
Query: 397 YFRPPSFLRAPSWIDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEER 576
Y+ P +A G SE+RL + +F LDV HF+P+E+ V+ + +++EV +H +R
Sbjct: 47 YYVRPRAAQAAEGSRAGASELRLSEGKFQAFLDVSHFTPDEVTVRTVDNLLEVSARHPQR 106
Query: 577 QDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPR 702
D HGF+SREF R Y +PADVDP + ++LS DG+L + PR
Sbjct: 107 LDRHGFVSREFCRTYVLPADVDPWRVRAALSHDGILNLEAPR 148
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,038,052
Number of extensions: 1240953
Number of successful extensions: 4165
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4150
Number of HSP's successfully gapped: 15
Length of query: 510
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 407
Effective length of database: 8,779,541
Effective search space: 3573273187
Effective search space used: 3573273187
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002684
(1530 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 902 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 902 bits (455), Expect = 0.0
Identities = 455/455 (100%)
Strand = Plus / Minus
Query: 2 aagaccaggacaagccactggccagctcagacgtgtctgtatttctcttttcttagctca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432534 aagaccaggacaagccactggccagctcagacgtgtctgtatttctcttttcttagctca 44432475
Query: 62 gtgagtactgggtatgtgtcacactgccaaatccccgatcacaagtctccatgaacgggt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432474 gtgagtactgggtatgtgtcacactgccaaatccccgatcacaagtctccatgaacgggt 44432415
Query: 122 ggtgagctgggataataaaacccctgacatcaccattccagaagcttcacaagactgcgt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432414 ggtgagctgggataataaaacccctgacatcaccattccagaagcttcacaagactgcgt 44432355
Query: 182 atataaggggctggctggagctgcagctgaaggagctgaccggccagctgaccctctaca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432354 atataaggggctggctggagctgcagctgaaggagctgaccggccagctgaccctctaca 44432295
Query: 242 tccacccagccgccatggacattgccatccaccacccctggatccgccgccccttctttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432294 tccacccagccgccatggacattgccatccaccacccctggatccgccgccccttctttc 44432235
Query: 302 ctttccactctcccagccgcctctttgaccagttctttggagaacacctgttggagtctg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432234 ctttccactctcccagccgcctctttgaccagttctttggagaacacctgttggagtctg 44432175
Query: 362 atctcttcccagcttctacttccctgagccccttctactttcggccgccctcgttcctgc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44432174 atctcttcccagcttctacttccctgagccccttctactttcggccgccctcgttcctgc 44432115
Query: 422 gggcacccagctggattgacactgggctctcagag 456
|||||||||||||||||||||||||||||||||||
Sbjct: 44432114 gggcacccagctggattgacactgggctctcagag 44432080
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus
Query: 578 aggatgaacatggtttcatctcccgggagttccacaggaaataccggatcccagctgatg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429324 aggatgaacatggtttcatctcccgggagttccacaggaaataccggatcccagctgatg 44429265
Query: 638 tggaccctctcaccattacttcatccctgtcatctgatggggtcctcactgtgaatggac 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429264 tggaccctctcaccattacttcatccctgtcatctgatggggtcctcactgtgaatggac 44429205
Query: 698 caaggagacaggcctctggccccgagcgcaccattcccatcacccgtgaagagaagcctg 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429204 caaggagacaggcctctggccccgagcgcaccattcccatcacccgtgaagagaagcctg 44429145
Query: 758 ctgtcactgcagcccccaagaagtagatgcccttcctctaactgcattttttaaaacaag 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429144 ctgtcactgcagcccccaagaagtagatgcccttcctctaactgcattttttaaaacaag 44429085
Query: 818 aaaccttcctcatcagtgaatgaaaatcttgtgactagtgctgaagcttattaatgctaa 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429084 aaaccttcctcatcagtgaatgaaaatcttgtgactagtgctgaagcttattaatgctaa 44429025
Query: 878 gggcaggcccaaattattaagctaataaatatcattcagcaaca 921
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44429024 gggcaggcccaaattattaagctaataaatatcattcagcaaca 44428981
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 455 agatgcgtctggagaaggacagattctctgtcaacctggatgtgaagcacttctcccccg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44430995 agatgcgtctggagaaggacagattctctgtcaacctggatgtgaagcacttctcccccg 44430936
Query: 515 aggaactcaaggtcaaggtgttgggagatgtgattgaggtgcacggcaaacatgaagagc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44430935 aggaactcaaggtcaaggtgttgggagatgtgattgaggtgcacggcaaacatgaagagc 44430876
Query: 575 gccagg 580
||||||
Sbjct: 44430875 gccagg 44430870
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,608,567
Number of extensions: 344
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 3
Length of query: 1530
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1509
Effective length of database: 2,808,413,156
Effective search space: 4237895452404
Effective search space used: 4237895452404
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)