Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030272.1| 39S ribosomal protein L45, mitochondrial pre... 568 e-162
>ref|NP_001030272.1| 39S ribosomal protein L45, mitochondrial precursor [Bos taurus].
Length = 306
Score = 568 bits (1463), Expect = e-162
Identities = 269/306 (87%), Positives = 286/306 (93%)
Frame = +3
Query: 75 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 254
MAAP+ R LSCL R +GWWSRQP+L+TQSTAVVPVRTKKRFTPP YQPKYK+EKEF E+A
Sbjct: 1 MAAPLPRSLSCLSRAVGWWSRQPILMTQSTAVVPVRTKKRFTPPIYQPKYKTEKEFTEYA 60
Query: 255 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 434
RKAGLVIP E LERPIHLACTA IFDAYVPPEGDAR+SSLSKEGLAQR ERLKKNVASQL
Sbjct: 61 RKAGLVIPQESLERPIHLACTASIFDAYVPPEGDARVSSLSKEGLAQRTERLKKNVASQL 120
Query: 435 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIRYKT 614
SIR+I+ESDPNFK+KDFPEKA+DIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDI+YKT
Sbjct: 121 SIRRIKESDPNFKVKDFPEKAQDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKT 180
Query: 615 VRWSFVESLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 794
V WSFVESLEPPQVVQVRCSSL+ + N YGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR
Sbjct: 181 VSWSFVESLEPPQVVQVRCSSLVTKSNTYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 240
Query: 795 DVLEYVVFEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEV 974
DVLEYVVFEKHL +PYGSWRMHGKI+PPWAPPKQPILKTVMIPGPQLKP EE+EE Q E
Sbjct: 241 DVLEYVVFEKHLANPYGSWRMHGKIVPPWAPPKQPILKTVMIPGPQLKPGEEYEELQREA 300
Query: 975 HKPQPA 992
HKPQ A
Sbjct: 301 HKPQLA 306
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,301,824
Number of extensions: 1488763
Number of successful extensions: 4711
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4692
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,240,222
Effective search space: 4115424158
Effective search space used: 4115424158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal p... 583 e-166
Alignment gi|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45... 374 e-103
>ref|XP_850801.1| PREDICTED: similar to mitochondrial ribosomal protein L45 [Canis
familiaris].
Length = 303
Score = 583 bits (1502), Expect = e-166
Identities = 275/302 (91%), Positives = 290/302 (96%)
Frame = +3
Query: 75 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 254
MAAP RGL CL + LGWWSRQPVLVTQST VVPVRTKKRFTPPTY+PKYKSEKEF+E+A
Sbjct: 1 MAAPTPRGLHCLSKALGWWSRQPVLVTQSTVVVPVRTKKRFTPPTYEPKYKSEKEFMEYA 60
Query: 255 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 434
RKAGLVIP ERLERP+HLACTAGIFDAYVPPEGDAR+SSL+KEGLAQR+E+LKK VASQL
Sbjct: 61 RKAGLVIPPERLERPLHLACTAGIFDAYVPPEGDARLSSLAKEGLAQRSEQLKKKVASQL 120
Query: 435 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIRYKT 614
SIRKIRE DPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDI+YKT
Sbjct: 121 SIRKIREHDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIKYKT 180
Query: 615 VRWSFVESLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 794
VRWSFVESLEPPQVVQVRCS+L+NQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR
Sbjct: 181 VRWSFVESLEPPQVVQVRCSNLLNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 240
Query: 795 DVLEYVVFEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEV 974
DVLEYVVFEKHLV+PYGSWRMHGKI PPWAP KQPILKTVMIPGPQLKPWE++EEPQGE
Sbjct: 241 DVLEYVVFEKHLVNPYGSWRMHGKITPPWAPHKQPILKTVMIPGPQLKPWEDYEEPQGEA 300
Query: 975 HK 980
HK
Sbjct: 301 HK 302
>ref|XP_855187.1| PREDICTED: similar to 39S ribosomal protein L45, mitochondrial
precursor (L45mt) (MRP-L45) [Canis familiaris].
Length = 213
Score = 374 bits (960), Expect = e-103
Identities = 178/197 (90%), Positives = 187/197 (94%)
Frame = +3
Query: 351 GDARISSLSKEGLAQRAERLKKNVASQLSIRKIRESDPNFKIKDFPEKAKDIFIEAHLCL 530
GDAR+SSL+KEGLAQR+E+LKK VASQLSIRKIRE DPNFKIKDFPEKAKDIFIEAHLCL
Sbjct: 13 GDARLSSLAKEGLAQRSEQLKKKVASQLSIRKIREHDPNFKIKDFPEKAKDIFIEAHLCL 72
Query: 531 NNSDHDRLHTLVTENCFPDMVWDIRYKTVRWSFVESLEPPQVVQVRCSSLMNQGNIYGQV 710
NNSDHDRLHTLVTENCFPDMVWDI+YK V WSFVESLEPPQVVQV CS+L+NQGNIY QV
Sbjct: 73 NNSDHDRLHTLVTENCFPDMVWDIKYKMVHWSFVESLEPPQVVQVCCSNLLNQGNIYSQV 132
Query: 711 TVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLVDPYGSWRMHGKIIPPWAPP 890
TVR HTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLV+PYGSWRMHGKI PPWAP
Sbjct: 133 TVRKHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVVFEKHLVNPYGSWRMHGKITPPWAPH 192
Query: 891 KQPILKTVMIPGPQLKP 941
KQPILK +MIPGPQLKP
Sbjct: 193 KQPILKMMMIPGPQLKP 209
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,405,042
Number of extensions: 1534174
Number of successful extensions: 4893
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4872
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,374,224
Effective search space: 4427776512
Effective search space used: 4427776512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115727.4| 39S ribosomal protein L45, mitochondrial [Homo ... 544 e-155
>ref|NP_115727.4| 39S ribosomal protein L45, mitochondrial [Homo sapiens].
Length = 306
Score = 544 bits (1401), Expect = e-155
Identities = 255/306 (83%), Positives = 280/306 (91%)
Frame = +3
Query: 75 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 254
MAAP+ +G SCL R LGWW RQPVLVTQS A+VPVRTKKRFTPP YQPK+K+EKEF++HA
Sbjct: 1 MAAPIPQGFSCLSRFLGWWFRQPVLVTQSAAIVPVRTKKRFTPPIYQPKFKTEKEFMQHA 60
Query: 255 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 434
RKAGLVIP E+ +R IHLACTAGIFDAYVPPEGDARISSLSKEGL +R ER+KK +ASQ+
Sbjct: 61 RKAGLVIPPEKSDRSIHLACTAGIFDAYVPPEGDARISSLSKEGLIERTERMKKTMASQV 120
Query: 435 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIRYKT 614
SIR+I++ D NFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTE+CFPDM WDI+YKT
Sbjct: 121 SIRRIKDYDANFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMTWDIKYKT 180
Query: 615 VRWSFVESLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 794
VRWSFVESLEP VVQVRCSS+MNQGN+YGQ+TVRMHTRQTLAIYDRFGRLMYGQEDVP+
Sbjct: 181 VRWSFVESLEPSHVVQVRCSSMMNQGNVYGQITVRMHTRQTLAIYDRFGRLMYGQEDVPK 240
Query: 795 DVLEYVVFEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEV 974
DVLEYVVFEK L +PYGSWRMH KI+PPWAPPKQPILKTVMIPGPQLKP EE+EE QGE
Sbjct: 241 DVLEYVVFEKQLTNPYGSWRMHTKIVPPWAPPKQPILKTVMIPGPQLKPEEEYEEAQGEA 300
Query: 975 HKPQPA 992
KPQ A
Sbjct: 301 QKPQLA 306
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,492,932
Number of extensions: 1515654
Number of successful extensions: 4707
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4688
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,835,944
Effective search space: 4272751872
Effective search space used: 4272751872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080203.1| 39S ribosomal protein L45, mitochondrial precur... 542 e-154
>ref|NP_080203.1| 39S ribosomal protein L45, mitochondrial precursor [Mus musculus].
Length = 306
Score = 542 bits (1397), Expect = e-154
Identities = 256/306 (83%), Positives = 278/306 (90%)
Frame = +3
Query: 75 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 254
MAAPV RGLS L R LGWWSRQP+LVTQST VV V+TK RF PPT +PKYK+EKEF+E+A
Sbjct: 1 MAAPVPRGLSSLYRTLGWWSRQPILVTQSTTVVQVKTKSRFRPPTPEPKYKTEKEFLEYA 60
Query: 255 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 434
RKAGLVIP ERLERPIHLACTAGIFD YVPPEGDAR+SSLSKEGL QR ERL+KN ASQL
Sbjct: 61 RKAGLVIPQERLERPIHLACTAGIFDPYVPPEGDARMSSLSKEGLTQRTERLRKNAASQL 120
Query: 435 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTENCFPDMVWDIRYKT 614
+IRKIRE D NFK KDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTE+CFPDMVWD++YKT
Sbjct: 121 AIRKIREFDANFKTKDFPEKAKDIFIEAHLCLNNSDHDRLHTLVTEHCFPDMVWDLKYKT 180
Query: 615 VRWSFVESLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPR 794
VRW FVESLEP QVV VRCS L+NQ N+YGQVTVR+HTRQTLAIYDRFGRLMYGQEDVP+
Sbjct: 181 VRWGFVESLEPAQVVHVRCSGLVNQSNMYGQVTVRLHTRQTLAIYDRFGRLMYGQEDVPK 240
Query: 795 DVLEYVVFEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEV 974
DVLEYVVFE+HL++PYGSWRMH KI+P WAPPKQPILKT+MIPGPQLKPWEE+EE QGE
Sbjct: 241 DVLEYVVFERHLMNPYGSWRMHAKIVPAWAPPKQPILKTLMIPGPQLKPWEEYEETQGEA 300
Query: 975 HKPQPA 992
KPQ A
Sbjct: 301 QKPQLA 306
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,644,583
Number of extensions: 1270904
Number of successful extensions: 3888
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3874
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,523,851
Effective search space: 3631916790
Effective search space used: 3631916790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362150.1| PREDICTED: 39S ribosomal protein L45, mitoch... 311 6e-85
Alignment gi|XP_003362234.1| PREDICTED: 39S ribosomal protein L45, mitoch... 256 2e-68
>ref|XP_003362150.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like, partial
[Sus scrofa].
Length = 153
Score = 311 bits (796), Expect = 6e-85
Identities = 153/153 (100%), Positives = 153/153 (100%)
Frame = +3
Query: 75 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 254
MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA
Sbjct: 1 MAAPVTRGLSCLPRVLGWWSRQPVLVTQSTAVVPVRTKKRFTPPTYQPKYKSEKEFVEHA 60
Query: 255 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 434
RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL
Sbjct: 61 RKAGLVIPHERLERPIHLACTAGIFDAYVPPEGDARISSLSKEGLAQRAERLKKNVASQL 120
Query: 435 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLN 533
SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLN
Sbjct: 121 SIRKIRESDPNFKIKDFPEKAKDIFIEAHLCLN 153
>ref|XP_003362234.1| PREDICTED: 39S ribosomal protein L45, mitochondrial-like, partial
[Sus scrofa].
Length = 119
Score = 256 bits (653), Expect = 2e-68
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 636 SLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVV 815
SLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVV
Sbjct: 1 SLEPPQVVQVRCSSLMNQGNIYGQVTVRMHTRQTLAIYDRFGRLMYGQEDVPRDVLEYVV 60
Query: 816 FEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEVHKPQPA 992
FEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEVHKPQPA
Sbjct: 61 FEKHLVDPYGSWRMHGKIIPPWAPPKQPILKTVMIPGPQLKPWEEFEEPQGEVHKPQPA 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,413,017
Number of extensions: 956072
Number of successful extensions: 2966
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2954
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,829,335
Effective search space: 2578165820
Effective search space used: 2578165820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002688
(1180 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896494.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 527 e-147
gb|GL896349.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 359 2e-96
>gb|GL896494.1| Sus scrofa unplaced genomic scaffold chrU_scaffold829
Length = 24070
Score = 527 bits (266), Expect = e-147
Identities = 272/274 (99%)
Strand = Plus / Minus
Query: 907 agacggtgatgatacctggcccccagctgaaaccctgggaagagtttgaagagccacaag 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19547 agacggtgatgatacctggcccccagctgaaaccctgggaagagtttgaagagccacaag 19488
Query: 967 gagaggtccataagcctcagcctgcgtgacggcgaaatgactcctgaggtgaagcctggg 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19487 gagaggtccataagcctcagcctgcgtgacggcgaaatgactcctgaggtgaagcctggg 19428
Query: 1027 tgatgagatggctggaagctgtgaagtctaagaacctgggagctgtgaagtcatctgtct 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19427 tgatgagatggctggaagctgtgaagtctaagaacctgggagctgtgaagtcatctgtct 19368
Query: 1087 tcttcctgccgtagaaagaactacctttgctctctcttgctctgcgtggctcttctgggc 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19367 tcttcctgccgtagaaagaactacctttgctctctcttgctctgcgtggctcttctgggc 19308
Query: 1147 agtctttgtgtcagtaaccactgctgatggctgg 1180
|||||| ||||||||||||||||||||||||||
Sbjct: 19307 agtcttgttgtcagtaaccactgctgatggctgg 19274
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 731 gcagactctggccatctatgaccggtttggccggttgatgtatggacaggaagatgtgcc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19907 gcagactctggccatctatgaccggtttggccggttgatgtatggacaggaagatgtgcc 19848
Query: 791 cagggatgtcctggagtatgttgtctttgaaaagcacctggtggacccttatgggagctg 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19847 cagggatgtcctggagtatgttgtctttgaaaagcacctggtggacccttatgggagctg 19788
Query: 851 gcgaatgcatggcaagatcattcccccatgggcaccccctaagcagcccatccttaag 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19787 gcgaatgcatggcaagatcattcccccatgggcaccccctaagcagcccatccttaag 19730
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 628 tcgtagaatctttagagccaccccaggtggtgcaggttcgctgttcgagtctgatgaacc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20644 tcgtagaatctttagagccaccccaggtggtgcaggttcgctgttcgagtctgatgaacc 20585
Query: 688 agggcaacatctatggccaggtcaccgtccgcatgcacactcggcag 734
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20584 agggcaacatctatggccaggtcaccgtccgcatgcacactcggcag 20538
Score = 99.6 bits (50), Expect = 3e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 536 ctcagaccatgaccggcttcataccttggtaaccgaaaactgctttccgg 585
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22114 ctcagaccatgaccggcttcataccttggtaaccgaaaactgctttccgg 22065
>gb|GL896349.1| Sus scrofa unplaced genomic scaffold chrU_scaffold699
Length = 19119
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 138 cagccagtcttggtgactcagtccacagcagtagttccagtgagaactaaaaaacgtttc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15045 cagccagtcttggtgactcagtccacagcagtagttccagtgagaactaaaaaacgtttc 15104
Query: 198 acaccccctacctatcaacccaagtacaaatcagagaaggagtttgtagaacatgcccgg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15105 acaccccctacctatcaacccaagtacaaatcagagaaggagtttgtagaacatgcccgg 15164
Query: 258 aaagcaggactggtcatacctcatgaacgtttggagcgccccatacatctagcctgtaca 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15165 aaagcaggactggtcatacctcatgaacgtttggagcgccccatacatctagcctgtaca 15224
Query: 318 g 318
|
Sbjct: 15225 g 15225
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 1 accctttgcgccttctttcctgccccaggcgcatcactttcagtctccatcccagctgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14074 accctttgcgccttctttcctgccccaggcgcatcactttcagtctccatcccagctgcc 14133
Query: 61 tttgcgcgagcaaaatggcagcccccgtaacacggggcttgtcttgcttacccagggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14134 tttgcgcgagcaaaatggcagcccccgtaacacggggcttgtcttgcttacccagggttt 14193
Query: 121 taggatggtggtctcggcag 140
||||||||||||||||||||
Sbjct: 14194 taggatggtggtctcggcag 14213
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 314 tacagctggtatctttgatgcctatgttcctcctgagggtgatgcccggatatcatctct 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15900 tacagctggtatctttgatgcctatgttcctcctgagggtgatgcccggatatcatctct 15959
Query: 374 ttctaaggaaggactggcacagagagctgagcgactgaagaagaatgtggcctcacaatt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15960 ttctaaggaaggactggcacagagagctgagcgactgaagaagaatgtggcctcacaatt 16019
Query: 434 gtc 436
|||
Sbjct: 16020 gtc 16022
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 437 aatccgcaagataagagaaagtgatcctaattttaaaattaaggacttccctgaaaaagc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17790 aatccgcaagataagagaaagtgatcctaattttaaaattaaggacttccctgaaaaagc 17849
Query: 497 caaggatatcttcattgaagcgcacctgtgtctaaacaa 535
|||||||||||||||||||||||||||||||||||||||
Sbjct: 17850 caaggatatcttcattgaagcgcacctgtgtctaaacaa 17888
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,657,787
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 8
Length of query: 1180
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1159
Effective length of database: 2,808,413,156
Effective search space: 3254950847804
Effective search space used: 3254950847804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)