Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776317.1| argininosuccinate synthase [Bos taurus]. 597 e-171
>ref|NP_776317.1| argininosuccinate synthase [Bos taurus].
Length = 412
Score = 597 bits (1539), Expect = e-171
Identities = 294/324 (90%), Positives = 303/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MS KGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSGKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IED+SKEFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDISKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQ+RFEL+CYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIP+PVTPKNPWS
Sbjct: 121 KGNDQIRFELTCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPVPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPD+LEIEFKKGVPVKVTNV D
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDMLEIEFKKGVPVKVTNVGD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T STALELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHSTALELFLYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,818,339
Number of extensions: 1209415
Number of successful extensions: 4657
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4641
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,240,222
Effective search space: 4086943714
Effective search space used: 4086943714
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860201.1| PREDICTED: similar to Argininosuccinate synthas... 600 e-172
Alignment gi|XP_860166.1| PREDICTED: similar to argininosuccinate synthet... 600 e-172
Alignment gi|XP_849895.1| PREDICTED: similar to Argininosuccinate synthas... 600 e-172
Alignment gi|XP_537813.2| PREDICTED: similar to argininosuccinate synthet... 551 e-157
>ref|XP_860201.1| PREDICTED: similar to Argininosuccinate synthase
(Citrulline--aspartate ligase) isoform 5 [Canis
familiaris].
Length = 412
Score = 600 bits (1548), Expect = e-172
Identities = 298/324 (91%), Positives = 304/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFEL+CYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHRTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
>ref|XP_860166.1| PREDICTED: similar to argininosuccinate synthetase isoform 4 [Canis
familiaris].
Length = 390
Score = 600 bits (1548), Expect = e-172
Identities = 298/324 (91%), Positives = 304/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFEL+CYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHRTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
>ref|XP_849895.1| PREDICTED: similar to Argininosuccinate synthase
(Citrulline--aspartate ligase) isoform 3 [Canis
familiaris].
Length = 412
Score = 600 bits (1548), Expect = e-172
Identities = 298/324 (91%), Positives = 304/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFEL+CYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHRTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
>ref|XP_537813.2| PREDICTED: similar to argininosuccinate synthetase isoform 1 [Canis
familiaris].
Length = 393
Score = 551 bits (1421), Expect = e-157
Identities = 280/324 (86%), Positives = 285/324 (87%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
K VIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 K-------------------VIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 161
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD
Sbjct: 162 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 221
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 222 GTTHRTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 281
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 282 TMDREVRKIKQGLGLKFAELVYTG 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,739,861
Number of extensions: 1239931
Number of successful extensions: 5150
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5096
Number of HSP's successfully gapped: 4
Length of query: 391
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,374,224
Effective search space: 4397028064
Effective search space used: 4397028064
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_446464.1| argininosuccinate synthase [Homo sapiens]. 598 e-171
Alignment gi|NP_000041.2| argininosuccinate synthase [Homo sapiens]. 598 e-171
>ref|NP_446464.1| argininosuccinate synthase [Homo sapiens].
Length = 412
Score = 598 bits (1542), Expect = e-171
Identities = 296/324 (91%), Positives = 304/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVS+EFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRF+GRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPN+PDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
>ref|NP_000041.2| argininosuccinate synthase [Homo sapiens].
Length = 412
Score = 598 bits (1542), Expect = e-171
Identities = 296/324 (91%), Positives = 304/324 (93%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVS+EFVEEFIWPAIQSSA+YEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRF+GRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPN+PDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G T T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,558,161
Number of extensions: 1204473
Number of successful extensions: 4613
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4567
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 286
Effective length of database: 14,835,944
Effective search space: 4243079984
Effective search space used: 4243079984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031520.1| argininosuccinate synthase [Mus musculus]. 597 e-171
>ref|NP_031520.1| argininosuccinate synthase [Mus musculus].
Length = 412
Score = 597 bits (1540), Expect = e-171
Identities = 293/324 (90%), Positives = 306/324 (94%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPA+QSSA+YEDRYLLGTSLARPCIAR+QVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAVQSSALYEDRYLLGTSLARPCIARRQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFEL+CYSLAPQIKVIAPWRMPEFYNRF+GRNDLMEYAKQHGIPIPVTPK+PWS
Sbjct: 121 KGNDQVRFELTCYSLAPQIKVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKSPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPD+LEIEFKKGVPVKVTN+KD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDVLEIEFKKGVPVKVTNIKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
G TR+T+LELF+YLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GTTRTTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,699,160
Number of extensions: 989768
Number of successful extensions: 3488
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,523,851
Effective search space: 3606869088
Effective search space used: 3606869088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353734.1| PREDICTED: argininosuccinate synthase [Sus s... 611 e-175
>ref|XP_003353734.1| PREDICTED: argininosuccinate synthase [Sus scrofa].
Length = 412
Score = 611 bits (1575), Expect = e-175
Identities = 305/324 (94%), Positives = 307/324 (94%)
Frame = +1
Query: 202 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARXXXXXXXXXXVF 381
MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEAR VF
Sbjct: 1 MSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVF 60
Query: 382 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 561
IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG
Sbjct: 61 IEDVSKEFVEEFIWPAIQSSAMYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATG 120
Query: 562 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 741
KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS
Sbjct: 121 KGNDQVRFELSCYSLAPQIKVIAPWRMPEFYNRFQGRNDLMEYAKQHGIPIPVTPKNPWS 180
Query: 742 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 921
MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD
Sbjct: 181 MDENLMHISYEAGILENPKNQAPPGLYTKTQDPAKAPNSPDILEIEFKKGVPVKVTNVKD 240
Query: 922 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 1101
GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF
Sbjct: 241 GITRSTALELFVYLNEVAGKHGVGRIDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAF 300
Query: 1102 TMDRGGAQNQTRPGLKFAELVYTG 1173
TMDR + + GLKFAELVYTG
Sbjct: 301 TMDREVRKIKQGLGLKFAELVYTG 324
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,245,548
Number of extensions: 805416
Number of successful extensions: 2888
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2879
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 290
Effective length of database: 8,829,335
Effective search space: 2560507150
Effective search space used: 2560507150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002698
(1173 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 373 e-100
>Sscrofa_Chr01
|| Length = 315321322
Score = 373 bits (188), Expect = e-100
Identities = 191/192 (99%)
Strand = Plus / Plus
Query: 374 aggtgttcatcgaggacgtcagcaaggagttcgtggaagagttcatctggcccgccatcc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304465700 aggtgttcatcgaggacgtcagcaaggagttcgtggaagagttcatctggcccgccatcc 304465759
Query: 434 agtccagtgccatgtacgaggaccgctacctcctgggcacctccctggcccggccctgca 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304465760 agtccagtgccatgtacgaggaccgctacctcctgggcacctccctggcccggccctgca 304465819
Query: 494 tcgcccgcaaacaggtggagatcgcccagcgggagggggccaagtacgtgtctcacggcg 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 304465820 tcgcccgcaaacaggtggagatcgcccagcgggagggggccaagtacgtgtctcacggag 304465879
Query: 554 ccacaggaaagg 565
||||||||||||
Sbjct: 304465880 ccacaggaaagg 304465891
Score = 240 bits (121), Expect = 1e-60
Identities = 135/137 (98%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 1038 aggtatctacgagaccccagcggggacgattctttaccacgctcatttagacatcgaggc 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304497510 aggtatctacgagaccccagcggggacgattctttaccacgctcatttagacatcgaggc 304497569
Query: 1098 cttcaccatggaccggggaggtgcgcaaaatcaaacaaggcc-gggcttgaaattcgccg 1156
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 304497570 cttcaccatggacc-gggaggtgcgcaaaatcaaacaaggcctgggcttgaaattcgccg 304497628
Query: 1157 agctggtgtacacgggt 1173
|||||||||||||||||
Sbjct: 304497629 agctggtgtacacgggt 304497645
Score = 234 bits (118), Expect = 9e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 75 tgtcgcgcgcgtccccccacttgtcccctgccctcggccctgcccccggcgccgggcata 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304454107 tgtcgcgcgcgtccccccacttgtcccctgccctcggccctgcccccggcgccgggcata 304454166
Query: 135 taaccgggatgagcgccgcaaccagccctggtccgccgcctgcctctgccgcctacctcc 194
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304454167 taaccaggatgagcgccgcaaccagccctggtccgccgcctgcctctgccgcctacctcc 304454226
Query: 195 cg 196
||
Sbjct: 304454227 cg 304454228
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 196 gacaggatgtccagcaaaggctctgtggttctggcctacagcggtggcctggacacctcc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304460692 gacaggatgtccagcaaaggctctgtggttctggcctacagcggtggcctggacacctcc 304460751
Query: 256 tgcatcctcgtgtggctgaaggagcaaggctatgacgtcatcgcctacctgg 307
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304460752 tgcatcctcgtgtggctgaaggagcaaggctatgacgtcatcgcctacctgg 304460803
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 797 agaaccaagcgcctccaggcctctacacaaagacccaggacccggccaaagcccccaaca 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304483557 agaaccaagcgcctccaggcctctacacaaagacccaggacccggccaaagcccccaaca 304483616
Query: 857 gcccggacatccttgagatagagtttaagaaagg 890
||||||||||||||||||||||||||||||||||
Sbjct: 304483617 gcccggacatccttgagatagagtttaagaaagg 304483650
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 888 aggggtacccgtgaaggtgaccaacgtcaaggatggcatcacccgcagcacggccttgga 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304486437 aggggtacccgtgaaggtgaccaacgtcaaggatggcatcacccgcagcacggccttgga 304486496
Query: 948 gctcttcgtctacctgaacgaagtcgcg 975
||||||||||||||||||||||||||||
Sbjct: 304486497 gctcttcgtctacctgaacgaagtcgcg 304486524
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 620 aggtcatcgctccttggagaatgcccgagttctacaaccggttccagggccgcaacgatc 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304473584 aggtcatcgctccttggagaatgcccgagttctacaaccggttccagggccgcaacgatc 304473643
Query: 680 tgatggagtacgcgaag 696
|||||||||||||||||
Sbjct: 304473644 tgatggagtacgcgaag 304473660
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 306 ggccaacatcggccagaaggaagactttgaggaagccaggaagaaggcgctgaagctcgg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304462776 ggccaacatcggccagaaggaagactttgaggaagccaggaagaaggcgctgaagctcgg 304462835
Query: 366 ggccaaaaaggt 377
||||||||||||
Sbjct: 304462836 ggccaaaaaggt 304462847
Score = 137 bits (69), Expect = 2e-29
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 695 agcaacacggaatccccatcccggtcacccccaagaacccgtggagcatggacgagaacc 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304477428 agcaacacggaatccccatcccggtcacccccaagaacccgtggagcatggacgagaacc 304477487
Query: 755 tgatgcatatcag 767
| |||||||||||
Sbjct: 304477488 taatgcatatcag 304477500
Score = 135 bits (68), Expect = 6e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 975 gggcaagcacggcgtgggccgcatcgacatcgtggagaaccgcttcatcggcatgaagtc 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304487054 gggcaagcacggcgtgggccgcatcgacatcgtggagaaccgcttcatcggcatgaagtc 304487113
Query: 1035 ccgaggta 1042
||||||||
Sbjct: 304487114 ccgaggta 304487121
Score = 121 bits (61), Expect = 9e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 563 aggggaacgaccaggtccggtttgagctcagctgctactcgctggcaccccagattaagg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304471560 aggggaacgaccaggtccggtttgagctcagctgctactcgctggcaccccagattaagg 304471619
Query: 623 t 623
|
Sbjct: 304471620 t 304471620
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 765 cagctacgaggctggcatcctggagaaccccaag 798
||||||||||||||||||||||||||||||||||
Sbjct: 304478307 cagctacgaggctggcatcctggagaaccccaag 304478340
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,339,263
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 13
Length of query: 1173
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1152
Effective length of database: 2,808,413,156
Effective search space: 3235291955712
Effective search space used: 3235291955712
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)