Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851355.2| isocitrate dehydrogenase [NADP] cytoplasmic [Bo... 740 0.0
Alignment gi|NP_786984.1| isocitrate dehydrogenase [NADP], mitochondrial ... 563 e-160
>ref|NP_851355.2| isocitrate dehydrogenase [NADP] cytoplasmic [Bos taurus].
Length = 414
Score = 740 bits (1911), Expect(2) = 0.0
Identities = 360/376 (95%), Positives = 367/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTP DGSPK Y+VH+FT+ GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPSDGSPKTVYLVHNFTESGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKS+FE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSEFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPDG
Sbjct: 241 AQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKELS FA ALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
EVCIETIEAGFMT+ L
Sbjct: 361 EVCIETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|NP_786984.1| isocitrate dehydrogenase [NADP], mitochondrial precursor [Bos
taurus].
Length = 452
Score = 563 bits (1452), Expect = e-160
Identities = 268/372 (72%), Positives = 313/372 (84%), Gaps = 1/372 (0%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 50 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 109
Query: 423 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 602
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 110 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 169
Query: 603 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSI 782
IGRHA+GDQY+ATDFVV G ++ +TP+DGS + V++F GGV MGMYN D+SI
Sbjct: 170 IGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFP-AGGVGMGMYNTDESI 228
Query: 783 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 962
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQ I++K YK++F+ KIWYEHR
Sbjct: 229 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQAIFEKHYKTEFDKHKIWYEHR 288
Query: 963 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 1142
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 289 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 348
Query: 1143 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEA 1322
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC+ET+E+
Sbjct: 349 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 408
Query: 1323 GFMTQGL-GCLY 1355
G MT+ L GC++
Sbjct: 409 GAMTKDLAGCIH 420
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,601,344
Number of extensions: 1456795
Number of successful extensions: 3878
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3877
Number of HSP's successfully gapped: 3
Length of query: 457
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,174,046
Effective search space: 4975090146
Effective search space used: 4975090146
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536047.2| PREDICTED: similar to Isocitrate dehydrogenase ... 736 0.0
Alignment gi|XP_850187.1| PREDICTED: similar to Isocitrate dehydrogenase ... 736 0.0
Alignment gi|XP_860821.1| PREDICTED: similar to Isocitrate dehydrogenase ... 724 0.0
Alignment gi|XP_860853.1| PREDICTED: similar to Isocitrate dehydrogenase ... 722 0.0
Alignment gi|XP_860792.1| PREDICTED: similar to Isocitrate dehydrogenase ... 581 e-166
Alignment gi|XP_536192.2| PREDICTED: similar to isocitrate dehydrogenase ... 562 e-160
>ref|XP_536047.2| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 1 [Canis familiaris].
Length = 414
Score = 736 bits (1901), Expect(2) = 0.0
Identities = 358/376 (95%), Positives = 367/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKI+GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIRGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DGS KMTY+VH+F + GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPDG
Sbjct: 241 AQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKELS FA ALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
EVC+ETIEAGFMT+ L
Sbjct: 361 EVCVETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|XP_850187.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 2 [Canis familiaris].
Length = 414
Score = 736 bits (1901), Expect(2) = 0.0
Identities = 358/376 (95%), Positives = 367/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKI+GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIRGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DGS KMTY+VH+F + GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPDG
Sbjct: 241 AQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKELS FA ALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
EVC+ETIEAGFMT+ L
Sbjct: 361 EVCVETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|XP_860821.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 4 [Canis familiaris].
Length = 415
Score = 724 bits (1869), Expect(2) = 0.0
Identities = 355/377 (94%), Positives = 364/377 (96%), Gaps = 1/377 (0%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKI+GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIRGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFT-DCGGVA 752
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DGS KMTY++ + GGVA
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLIQVLSFKGGGVA 180
Query: 753 MGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQF 932
MGMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQF
Sbjct: 181 MGMYNQDKSIEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQF 240
Query: 933 EAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPD 1112
EAQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPD
Sbjct: 241 EAQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPD 300
Query: 1113 GKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANAL 1292
GKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKELS FA AL
Sbjct: 301 GKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKAL 360
Query: 1293 EEVCIETIEAGFMTQGL 1343
EEVC+ETIEAGFMT+ L
Sbjct: 361 EEVCVETIEAGFMTKDL 377
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 375 KDLAACIKGLPN 386
>ref|XP_860853.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 5 [Canis familiaris].
Length = 408
Score = 722 bits (1864), Expect(2) = 0.0
Identities = 355/376 (94%), Positives = 362/376 (96%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKI+GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIRGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DGS KMTY+ GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLG------GGVAM 174
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE
Sbjct: 175 GMYNQDKSIEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 234
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPDG
Sbjct: 235 AQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDG 294
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKELS FA ALE
Sbjct: 295 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALE 354
Query: 1296 EVCIETIEAGFMTQGL 1343
EVC+ETIEAGFMT+ L
Sbjct: 355 EVCVETIEAGFMTKDL 370
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 368 KDLAACIKGLPN 379
>ref|XP_860792.1| PREDICTED: similar to Isocitrate dehydrogenase [NADP] cytoplasmic
(Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific
ICDH) (IDP) isoform 3 [Canis familiaris].
Length = 299
Score = 581 bits (1497), Expect = e-166
Identities = 282/293 (96%), Positives = 287/293 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKI+GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIRGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DGS KMTY+VH+F + GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGSEKMTYLVHNFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSK WPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKSWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTS 1094
AQ IWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTS
Sbjct: 241 AQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTS 293
>ref|XP_536192.2| PREDICTED: similar to isocitrate dehydrogenase 2 (NADP+),
mitochondrial [Canis familiaris].
Length = 517
Score = 562 bits (1449), Expect = e-160
Identities = 268/372 (72%), Positives = 313/372 (84%), Gaps = 1/372 (0%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 116 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 175
Query: 423 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 602
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 176 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 235
Query: 603 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSI 782
IGRHA+GDQY+ATDFVV G +I ++P+DGS + V++F GGV MGMYN D+SI
Sbjct: 236 IGRHAHGDQYKATDFVVDRAGTFKIIFSPKDGSGAKEWEVYNFPG-GGVGMGMYNTDESI 294
Query: 783 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 962
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KIWYEHR
Sbjct: 295 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKNKIWYEHR 354
Query: 963 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 1142
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 355 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 414
Query: 1143 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEA 1322
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC++T+E+
Sbjct: 415 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVES 474
Query: 1323 GFMTQGL-GCLY 1355
G MT+ L GC++
Sbjct: 475 GAMTKDLAGCIH 486
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,949,844
Number of extensions: 1502909
Number of successful extensions: 3793
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3790
Number of HSP's successfully gapped: 10
Length of query: 457
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 351
Effective length of database: 15,340,888
Effective search space: 5384651688
Effective search space used: 5384651688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005887.2| isocitrate dehydrogenase [NADP] cytoplasmic [Ho... 732 0.0
Alignment gi|NP_002159.2| isocitrate dehydrogenase [NADP], mitochondrial ... 562 e-160
>ref|NP_005887.2| isocitrate dehydrogenase [NADP] cytoplasmic [Homo sapiens].
Length = 414
Score = 732 bits (1889), Expect(2) = 0.0
Identities = 356/376 (94%), Positives = 368/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MS+KI GGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSKKISGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKK+NVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP DG+ K+TY+VH+F + GGVAM
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVL+CPDG
Sbjct: 241 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLD+NKEL+ FANALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAFFANALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
EV IETIEAGFMT+ L
Sbjct: 361 EVSIETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|NP_002159.2| isocitrate dehydrogenase [NADP], mitochondrial precursor [Homo
sapiens].
Length = 452
Score = 562 bits (1448), Expect = e-160
Identities = 268/372 (72%), Positives = 312/372 (83%), Gaps = 1/372 (0%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD T+DQVT D+A A +KY+V
Sbjct: 50 VVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSV 109
Query: 423 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 602
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 110 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 169
Query: 603 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSI 782
IGRHA+GDQY+ATDFV G ++ +TP+DGS + V++F GGV MGMYN D+SI
Sbjct: 170 IGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFP-AGGVGMGMYNTDESI 228
Query: 783 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 962
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI+DK YK+ F+ KIWYEHR
Sbjct: 229 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHR 288
Query: 963 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 1142
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 289 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 348
Query: 1143 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEA 1322
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC+ET+E+
Sbjct: 349 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQMLEKVCVETVES 408
Query: 1323 GFMTQGL-GCLY 1355
G MT+ L GC++
Sbjct: 409 GAMTKDLAGCIH 420
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,040,993
Number of extensions: 1487632
Number of successful extensions: 3913
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3910
Number of HSP's successfully gapped: 3
Length of query: 457
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,802,980
Effective search space: 5195845980
Effective search space used: 5195845980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104790.1| isocitrate dehydrogenase [NADP] cytoplasmic ... 728 0.0
Alignment gi|NP_034627.3| isocitrate dehydrogenase [NADP] cytoplasmic [Mu... 728 0.0
Alignment gi|NP_766599.2| isocitrate dehydrogenase [NADP], mitochondrial ... 565 e-161
>ref|NP_001104790.1| isocitrate dehydrogenase [NADP] cytoplasmic [Mus musculus].
Length = 414
Score = 728 bits (1879), Expect(2) = 0.0
Identities = 355/376 (94%), Positives = 367/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MS+KIQGGSVVEMQGDEMTRIIWELIKEKLI PYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSRKIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
V+GWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP+DG+ K+TYMVHDF + GGVAM
Sbjct: 121 VTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDK+YKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQKI YEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG
Sbjct: 241 AQKICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAW+RGLAHRAKLD+N ELS FA ALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
+VCIETIEAGFMT+ L
Sbjct: 361 DVCIETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|NP_034627.3| isocitrate dehydrogenase [NADP] cytoplasmic [Mus musculus].
Length = 414
Score = 728 bits (1879), Expect(2) = 0.0
Identities = 355/376 (94%), Positives = 367/376 (97%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MS+KIQGGSVVEMQGDEMTRIIWELIKEKLI PYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSRKIQGGSVVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
V+GWVKPIIIGRHAYGDQYRATDFVVPGPGKVEI+YTP+DG+ K+TYMVHDF + GGVAM
Sbjct: 121 VTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAM 180
Query: 756 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFE 935
GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDK+YKSQFE
Sbjct: 181 GMYNQDKSIEDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFE 240
Query: 936 AQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 1115
AQKI YEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG
Sbjct: 241 AQKICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDG 300
Query: 1116 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALE 1295
KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAW+RGLAHRAKLD+N ELS FA ALE
Sbjct: 301 KTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALE 360
Query: 1296 EVCIETIEAGFMTQGL 1343
+VCIETIEAGFMT+ L
Sbjct: 361 DVCIETIEAGFMTKDL 376
Score = 25.8 bits (55), Expect(2) = 0.0
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 374 KDLAACIKGLPN 385
>ref|NP_766599.2| isocitrate dehydrogenase [NADP], mitochondrial precursor [Mus
musculus].
Length = 452
Score = 565 bits (1456), Expect = e-161
Identities = 269/372 (72%), Positives = 313/372 (84%), Gaps = 1/372 (0%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 50 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 109
Query: 423 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 602
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI
Sbjct: 110 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIT 169
Query: 603 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSI 782
IGRHA+GDQY+ATDFVV G ++ +TP+DGS + V++F GGV MGMYN D+SI
Sbjct: 170 IGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFP-AGGVGMGMYNTDESI 228
Query: 783 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 962
FAHS FQ ++ K WPLYLSTKNTILK YDGRFKDIFQEI+DK YK+ F+ KIWYEHR
Sbjct: 229 SGFAHSCFQYSIQKKWPLYLSTKNTILKAYDGRFKDIFQEIFDKHYKTDFDKNKIWYEHR 288
Query: 963 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 1142
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 289 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 348
Query: 1143 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEA 1322
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC++T+E+
Sbjct: 349 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVQTVES 408
Query: 1323 GFMTQGL-GCLY 1355
G MT+ L GC++
Sbjct: 409 GAMTKDLAGCIH 420
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,763,026
Number of extensions: 1263537
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3278
Number of HSP's successfully gapped: 5
Length of query: 457
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 352
Effective length of database: 12,463,779
Effective search space: 4387250208
Effective search space used: 4387250208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157479.1| isocitrate dehydrogenase [NADP], mitochondri... 562 e-160
Alignment gi|XP_003359677.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 488 e-139
Alignment gi|XP_003133673.2| PREDICTED: isocitrate dehydrogenase [NADP] c... 357 9e-99
Alignment gi|XP_003356713.1| PREDICTED: isocitrate dehydrogenase [NADP], ... 325 5e-89
Alignment gi|XP_003359676.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 282 3e-76
Alignment gi|XP_003133666.1| PREDICTED: isocitrate dehydrogenase [NADP] c... 173 1e-44
Alignment gi|XP_003356711.1| PREDICTED: isocitrate dehydrogenase [NADP], ... 141 7e-34
>ref|NP_001157479.1| isocitrate dehydrogenase [NADP], mitochondrial [Sus scrofa].
Length = 452
Score = 562 bits (1449), Expect = e-160
Identities = 269/372 (72%), Positives = 312/372 (83%), Gaps = 1/372 (0%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKLI P+V++ L +DLG+ NRD TNDQVT D+A A +KY+V
Sbjct: 50 VVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSV 109
Query: 423 GVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPII 602
VKCATITPDE RVEEFKLK+MWKSPNGTIRNILGGTVFRE IICKNI RLV GW KPI
Sbjct: 110 AVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNISRLVPGWTKPIT 169
Query: 603 IGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSI 782
IGRHA+GDQY+ATDFVV G +I +TP+DGS + V++F GGV MGMYN D+SI
Sbjct: 170 IGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESI 228
Query: 783 EDFAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHR 962
FAHS FQ A+ K WPLY+STKNTILK YDGRFKDIFQEI++K YK+ F+ KIWYEHR
Sbjct: 229 SGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHR 288
Query: 963 LIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAH 1142
LIDDMVAQ +KS GGF+WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAH
Sbjct: 289 LIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAH 348
Query: 1143 GTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEA 1322
GTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N++L FA LE+VC+ET+E+
Sbjct: 349 GTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVES 408
Query: 1323 GFMTQGL-GCLY 1355
G MT+ L GC++
Sbjct: 409 GAMTKDLAGCIH 420
>ref|XP_003359677.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 402
Score = 488 bits (1257), Expect(2) = e-139
Identities = 236/239 (98%), Positives = 238/239 (99%)
Frame = +3
Query: 627 QYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSIEDFAHSSF 806
+YRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSIEDFAHSSF
Sbjct: 19 KYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSIEDFAHSSF 78
Query: 807 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 986
QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ
Sbjct: 79 QMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQ 138
Query: 987 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYR 1166
AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYR
Sbjct: 139 AMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYR 198
Query: 1167 MYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEAGFMTQGL 1343
MYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEAGFMT+ L
Sbjct: 199 MYQKGQETSTNPIASIFAWTRGLAHRAKLDSNKELSIFANALEEVCIETIEAGFMTKDL 257
Score = 25.8 bits (55), Expect(2) = e-139
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 255 KDLAACIKGLPN 266
>ref|XP_003133673.2| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic, partial
[Sus scrofa].
Length = 187
Score = 357 bits (916), Expect = 9e-99
Identities = 175/181 (96%), Positives = 175/181 (96%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTDCGGVAM 755
VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFT M
Sbjct: 121 VSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEISYTPRDGSPKMTYMVHDFTGMFKSTM 180
Query: 756 G 758
G
Sbjct: 181 G 181
>ref|XP_003356713.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Sus
scrofa].
Length = 341
Score = 325 bits (832), Expect = 5e-89
Identities = 173/311 (55%), Positives = 204/311 (65%), Gaps = 37/311 (11%)
Frame = +3
Query: 243 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNV 422
VVEM GDEMTRIIW+ IKEKL + L +Y +E R T + + +
Sbjct: 28 VVEMDGDEMTRIIWQFIKEKL--QRADFFLETYV--VERRPETPHAICTGQPRLVVFLPI 83
Query: 423 GVKCATITP----DEKRVE---------------------------------EFKLKQMW 491
V A++ +E++ E EFKLK+MW
Sbjct: 84 CVALASVGVTSHIEEEKEEADADLTPSGCVLAWGSHAAGRGLQWGCFISVLLEFKLKKMW 143
Query: 492 KSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKV 671
KSPNGTIRNILGGTVFRE IICKNIPRLV GW KPI IGRHA+GDQY+ATDFVV G
Sbjct: 144 KSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTF 203
Query: 672 EISYTPRDGSPKMTYMVHDFTDCGGVAMGMYNQDKSIEDFAHSSFQMALSKGWPLYLSTK 851
+I +TP+DGS + V++F GGV MGMYN D+SI FAHS FQ A+ K WPLY+STK
Sbjct: 204 KIVFTPKDGSSAKQWEVYNFP-AGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTK 262
Query: 852 NTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNY 1031
NTILK YDGRFKDIFQEI++K YK+ F+ KIWYEHRLIDDMVAQ +KS GGF+WACKNY
Sbjct: 263 NTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNY 322
Query: 1032 DGDVQSDSVAQ 1064
DGDVQSD +AQ
Sbjct: 323 DGDVQSDILAQ 333
>ref|XP_003359676.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 150
Score = 282 bits (722), Expect = 3e-76
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 216 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 395
MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA
Sbjct: 1 MSQKIQGGSVVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDA 60
Query: 396 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 575
AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL
Sbjct: 61 AEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRL 120
Query: 576 VSGWVKPIIIGRHAYGDQ 629
VSGWVKPIIIGRHAYGDQ
Sbjct: 121 VSGWVKPIIIGRHAYGDQ 138
>ref|XP_003133666.1| PREDICTED: isocitrate dehydrogenase [NADP] cytoplasmic-like [Sus
scrofa].
Length = 125
Score = 173 bits (438), Expect(2) = 1e-44
Identities = 85/87 (97%), Positives = 86/87 (98%)
Frame = +3
Query: 1083 MMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSN 1262
MMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSN
Sbjct: 1 MMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSN 60
Query: 1263 KELSIFANALEEVCIETIEAGFMTQGL 1343
KELSIFANALEEVCIETIEAGFMT+ L
Sbjct: 61 KELSIFANALEEVCIETIEAGFMTKDL 87
Score = 25.8 bits (55), Expect(2) = 1e-44
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = +1
Query: 1336 KDLAACIKVLPN 1371
KDLAACIK LPN
Sbjct: 85 KDLAACIKGLPN 96
>ref|XP_003356711.1| PREDICTED: isocitrate dehydrogenase [NADP], mitochondrial-like [Sus
scrofa].
Length = 123
Score = 141 bits (356), Expect = 7e-34
Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 1/91 (1%)
Frame = +3
Query: 1086 MTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDSNK 1265
MTSVL+CPDGKT+EAEAAHGTVTRHYR +QKG+ TSTNPIASIFAWTRGL HR KLD N+
Sbjct: 1 MTSVLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQ 60
Query: 1266 ELSIFANALEEVCIETIEAGFMTQGL-GCLY 1355
+L FA LE+VC+ET+E+G MT+ L GC++
Sbjct: 61 DLIRFAQTLEKVCVETVESGAMTKDLAGCIH 91
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,086,116
Number of extensions: 930111
Number of successful extensions: 2386
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 9
Length of query: 457
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 355
Effective length of database: 8,804,438
Effective search space: 3125575490
Effective search space used: 3125575490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002705
(1372 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1719 0.0
Sscrofa_Chr15 585 e-164
Sscrofa_Chr07 86 6e-14
>Sscrofa_Chr16
|| Length = 86898991
Score = 1719 bits (867), Expect = 0.0
Identities = 1197/1303 (91%), Gaps = 3/1303 (0%)
Strand = Plus / Minus
Query: 70 tggggttaagccagtgagtggctgtggccgttccgggtcatcgccagggtacattcccct 129
||||||| || | ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 46547343 tggggttgagtctgtgagtggctgtggctgtcccgggtcatcgccagggtacattcccct 46547284
Query: 130 gcaggagataaactgcactcagctgagtgtgcaagattgggaagaattggggtgataaga 189
||||||| |||||||| ||||||||||| |||| ||||| ||||| |||| |||||||||
Sbjct: 46547283 gcaggaggtaaactgccctcagctgagtctgca-gattgagaagagttggagtgataaga 46547225
Query: 190 agttgtaaaggtttatcaaagctaaaatgtctcaaaaaatccagggtggttctgtggtag 249
|||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||
Sbjct: 46547224 agttgtaaaggtctatcaaagttaaaatgtctcaagaaatccaaggtggttctgtggtag 46547165
Query: 250 agatgcaaggagatgaaatgactcgaatcatttgggagttgattaaagagaaactcattt 309
|||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 46547164 agatgcaaaaagatgaaatgactcgaattatttgggaattgattaaagagaaactcattt 46547105
Query: 310 ttccctatgtggaattggacctgcacagctatgacttaggcatagagaatcgtgatgcca 369
||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 46547104 ttccctacatggaattggacctgca-agctatgacttaagcatagagaatcgtgatgcca 46547046
Query: 370 ccaatgaccaggtcaccaaggatgccgcagaagctataaagaaatacaacgttggtgtca 429
||||||||||||||||||| ||||| ||||||||| |||||||||||| | ||||||||
Sbjct: 46547045 ccaatgaccaggtcaccaaagatgctgcagaagctgtaaagaaatacagtgctggtgtca 46546986
Query: 430 agtgtgccaccatcacccccgatgagaagagagtggaggagttcaagttgaaacaaatgt 489
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 46546985 agtgtgccaccatcacccccaatgagaagagagtggaggagttcaagttgaaacaaatgt 46546926
Query: 490 ggaaatcaccaaatggcaccatccgaaatatcctgggtggcactgtctttagggaagcta 549
|||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 46546925 ggaaattacaaaatggcaccatctgaaatatcctgggtggcactgtcttttgggaagcta 46546866
Query: 550 ttatctgcaaaaatattcctcggcttgtgagcggttgggtaaaacccatcatcataggtc 609
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct: 46546865 ttatctgcaaaaatattccttggcttgtgagtggctgggtaaaacccatcatcataggtc 46546806
Query: 610 gtcatgcttacggggatcaatacagggcaaccgattttgtagttcctggacctggaaaag 669
|||||||||| ||||||||||||| ||||| ||||||| | |||||| ||||||||||
Sbjct: 46546805 atcatgcttacagggatcaatacagagcaacacattttgttgctcctgggcctggaaaag 46546746
Query: 670 tagagatatcctacacgccaagggatggatcccccaaaatgacatatatggtacatgact 729
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 46546745 tagagatatcctacacaccaagcaatggatcccccaaaatgacatatgtggtacatgact 46546686
Query: 730 tcacagactgtggtggtgttgccatggggatgtacaatcaagataagtcaattgaagatt 789
||||||||||| ||||||||| ||| ||||||||||||||||||||||| | |||||||
Sbjct: 46546685 tcacagactgttgtggtgttgttatgtggatgtacaatcaagataagtcagtcgaagatt 46546626
Query: 790 ttgcacacagttctttccagatggctctgtccaagggttggcctctgtacctgagcacca 849
||||| |||||||||||||||||| |||||||||| ||||||| ||||| |||||||| |
Sbjct: 46546625 ttgcatacagttctttccagatggatctgtccaagagttggcccctgtatctgagcacta 46546566
Query: 850 aaaataccatcctgaagaaatatgatggacgttttaaagacatctttcaggagatatatg 909
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 46546565 aaaatactatcctgaagaaatatgatggacattttaaagacatctttcaggagatatatg 46546506
Query: 910 acaagcagtacaaatcccagtttgaagctcagaagatctggtatgagcaccggctcatcg 969
|||||||||| || || ||||||||||||||||||||||| |||| |||||||||||| |
Sbjct: 46546505 acaagcagtagaagtctcagtttgaagctcagaagatctgatatgggcaccggctcattg 46546446
Query: 970 atgacatggtggcccaagctatgaaatcggagggcggcttcatctgggcctgtaaaaact 1029
|| |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct: 46546445 attacatggtggcccaagctacaaaatcagagggaagcttcatctggacctgtaaaaact 46546386
Query: 1030 atgatggtgacgtgcagtcggactctgtggcccaaggttatggctctcttggcatgatga 1089
||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 46546385 atgatggcaaagtgcagtcggactccatggcccaaggttatggctctcttggcatgatga 46546326
Query: 1090 ccagcgtgctgatttgtccagatggcaagacagtagaagccgaggctgcccatgggactg 1149
|||| |||||| ||||||||||||||| |||||||||||| ||||||||||| | |||||
Sbjct: 46546325 ccagtgtgctggtttgtccagatggcaggacagtagaagctgaggctgcccacgagactg 46546266
Query: 1150 taacacgtcactaccgtatgtaccagaaaggacaggagacgtccaccaatcccattgctt 1209
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 46546265 taacacgtcactaccatatgtaccagaaaggacaggagatgtccaccaatgccattgctt 46546206
Query: 1210 ccatttttgcctggaccagaggcctagcccacagagctaagctggatagcaataaagagc 1269
||| |||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct: 46546205 ccagttttgcctggaccagagggctagcccacagagctaattctgataacaataaagagc 46546146
Query: 1270 tcagcatctttgcaaatgctttggaagaagtctgtattgagaccattgaggctggcttca 1329
|||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 46546145 tcagcatctttgcaaaggctttgaaagaagtctgtattgagactgttgaggctggcttca 46546086
Query: 1330 tgacccaaggacttggctgcttgtattaaggttttacccaacg 1372
||| |||||||||||||||||||| |||| | |||||||||||
Sbjct: 46546085 tga-ccaaggacttggctgcttgtgttaaaggtttacccaacg 46546044
>Sscrofa_Chr15
|| Length = 157681621
Score = 585 bits (295), Expect = e-164
Identities = 295/295 (100%)
Strand = Plus / Minus
Query: 335 cagctatgacttaggcatagagaatcgtgatgccaccaatgaccaggtcaccaaggatgc 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122877212 cagctatgacttaggcatagagaatcgtgatgccaccaatgaccaggtcaccaaggatgc 122877153
Query: 395 cgcagaagctataaagaaatacaacgttggtgtcaagtgtgccaccatcacccccgatga 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122877152 cgcagaagctataaagaaatacaacgttggtgtcaagtgtgccaccatcacccccgatga 122877093
Query: 455 gaagagagtggaggagttcaagttgaaacaaatgtggaaatcaccaaatggcaccatccg 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122877092 gaagagagtggaggagttcaagttgaaacaaatgtggaaatcaccaaatggcaccatccg 122877033
Query: 515 aaatatcctgggtggcactgtctttagggaagctattatctgcaaaaatattcctcggct 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122877032 aaatatcctgggtggcactgtctttagggaagctattatctgcaaaaatattcctcggct 122876973
Query: 575 tgtgagcggttgggtaaaacccatcatcataggtcgtcatgcttacggggatcaa 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122876972 tgtgagcggttgggtaaaacccatcatcataggtcgtcatgcttacggggatcaa 122876918
Score = 365 bits (184), Expect = 4e-98
Identities = 184/184 (100%)
Strand = Plus / Minus
Query: 731 cacagactgtggtggtgttgccatggggatgtacaatcaagataagtcaattgaagattt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122870374 cacagactgtggtggtgttgccatggggatgtacaatcaagataagtcaattgaagattt 122870315
Query: 791 tgcacacagttctttccagatggctctgtccaagggttggcctctgtacctgagcaccaa 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122870314 tgcacacagttctttccagatggctctgtccaagggttggcctctgtacctgagcaccaa 122870255
Query: 851 aaataccatcctgaagaaatatgatggacgttttaaagacatctttcaggagatatatga 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122870254 aaataccatcctgaagaaatatgatggacgttttaaagacatctttcaggagatatatga 122870195
Query: 911 caag 914
||||
Sbjct: 122870194 caag 122870191
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 914 gcagtacaaatcccagtttgaagctcagaagatctggtatgagcaccggctcatcgatga 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122869313 gcagtacaaatcccagtttgaagctcagaagatctggtatgagcaccggctcatcgatga 122869254
Query: 974 catggtggcccaagctatgaaatcggagggcggcttcatctgggcctgtaaaaactatga 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122869253 catggtggcccaagctatgaaatcggagggcggcttcatctgggcctgtaaaaactatga 122869194
Query: 1034 tggtgacgtgcagtcggactctgtggcccaaggt 1067
||||||||||||||||||||||||||||||||||
Sbjct: 122869193 tggtgacgtgcagtcggactctgtggcccaaggt 122869160
Score = 295 bits (149), Expect = 3e-77
Identities = 162/165 (98%), Gaps = 1/165 (0%)
Strand = Plus / Minus
Query: 1206 gcttccatttttgcctggaccagaggcctagcccacagagctaagctggatagcaataaa 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122865915 gcttccatttttgcctggaccagaggcctagcccacagagctaagctggatagcaataaa 122865856
Query: 1266 gagctcagcatctttgcaaatgctttggaagaagtctgtattgagaccattgaggctggc 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122865855 gagctcagcatctttgcaaatgctttggaagaagtctgtattgagaccattgaggctggc 122865796
Query: 1326 ttcatgacccaaggacttggctgcttgtattaaggttttacccaa 1370
||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct: 122865795 ttcatga-ccaaggacttggctgcttgtattaaaggtttacccaa 122865752
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 1064 aggttatggctctcttggcatgatgaccagcgtgctgatttgtccagatggcaagacagt 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122866951 aggttatggctctcttggcatgatgaccagcgtgctgatttgtccagatggcaagacagt 122866892
Query: 1124 agaagccgaggctgcccatgggactgtaacacgtcactaccgtatgtaccagaaaggaca 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122866891 agaagccgaggctgcccatgggactgtaacacgtcactaccgtatgtaccagaaaggaca 122866832
Query: 1184 ggagacgtccaccaatcccattg 1206
|||||||||||||||||||||||
Sbjct: 122866831 ggagacgtccaccaatcccattg 122866809
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 197 aaggtttatcaaagctaaaatgtctcaaaaaatccagggtggttctgtggtagagatgca 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122879829 aaggtttatcaaagctaaaatgtctcaaaaaatccagggtggttctgtggtagagatgca 122879770
Query: 257 aggagatgaaatgactcgaatcatttgggagttgattaaagagaaactcatttttcccta 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122879769 aggagatgaaatgactcgaatcatttgggagttgattaaagagaaactcatttttcccta 122879710
Query: 317 tgtggaattggacctgcacag 337
|||||||||||||||||||||
Sbjct: 122879709 tgtggaattggacctgcacag 122879689
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 1 gccctgcctcctcagacccgttctgtttctgcgttggctgttaagaagccgaaacagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122883869 gccctgcctcctcagacccgttctgtttctgcgttggctgttaagaagccgaaacagctg 122883810
Query: 61 gggcccagctggggttaagccagtgagtggctgtggccgttccgggtcatcgccagggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122883809 gggcccagctggggttaagccagtgagtggctgtggccgttccgggtcatcgccagggta 122883750
Query: 121 cattcccctgcagg 134
||||||||||||||
Sbjct: 122883749 cattcccctgcagg 122883736
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 630 tacagggcaaccgattttgtagttcctggacctggaaaagtagagatatcctacacgcca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122873153 tacagggcaaccgattttgtagttcctggacctggaaaagtagagatatcctacacgcca 122873094
Query: 690 agggatggatcccccaaaatgacatatatggtacatgacttcacag 735
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122873093 agggatggatcccccaaaatgacatatatggtacatgacttcacag 122873048
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 132 aggagataaactgcactcagctgagtgtgcaagattgggaagaattggggtgataagaag 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122882709 aggagataaactgcactcagctgagtgtgcaagattgggaagaattggggtgataagaag 122882650
Query: 192 ttgtaaaggt 201
||||||||||
Sbjct: 122882649 ttgtaaaggt 122882640
>Sscrofa_Chr07
|| Length = 134764511
Score = 85.7 bits (43), Expect = 6e-14
Identities = 94/111 (84%)
Strand = Plus / Minus
Query: 942 aagatctggtatgagcaccggctcatcgatgacatggtggcccaagctatgaaatcggag 1001
|||||||||||||||||||||||||| |||||||||||||| || | | || || |
Sbjct: 60542891 aagatctggtatgagcaccggctcattgatgacatggtggctcaggtcctcaagtcttcg 60542832
Query: 1002 ggcggcttcatctgggcctgtaaaaactatgatggtgacgtgcagtcggac 1052
||||||||| | |||||||| || ||||| ||||| |||||||||||||||
Sbjct: 60542831 ggcggcttcgtgtgggcctgcaagaactacgatggagacgtgcagtcggac 60542781
Score = 61.9 bits (31), Expect = 9e-07
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 425 tgtcaagtgtgccaccatcacccccgatgag 455
|||||||||||||||||||||||||||||||
Sbjct: 60546691 tgtcaagtgtgccaccatcacccccgatgag 60546661
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,902,063
Number of extensions: 219
Number of successful extensions: 219
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 12
Length of query: 1372
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1351
Effective length of database: 2,808,413,156
Effective search space: 3794166173756
Effective search space used: 3794166173756
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)