Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039413.1| peroxisomal membrane protein PMP34 [Bos taur... 531 e-151
Alignment gi|NP_001039352.1| mitochondrial thiamine pyrophosphate carrier... 74 2e-13
Alignment gi|NP_001039965.1| ADP/ATP translocase 4 [Bos taurus]. 68 1e-11
Alignment gi|NP_001039610.1| brain mitochondrial carrier protein 1 [Bos t... 65 9e-11
Alignment gi|XP_002705973.1| PREDICTED: solute carrier family 25 (mitocho... 65 1e-10
Alignment gi|NP_777081.1| tricarboxylate transport protein, mitochondrial... 64 4e-10
Alignment gi|NP_001096767.1| S-adenosylmethionine mitochondrial carrier p... 63 5e-10
Alignment gi|NP_001094664.1| calcium-binding mitochondrial carrier protei... 63 6e-10
Alignment gi|NP_001028783.1| mitochondrial uncoupling protein 2 [Bos taur... 62 8e-10
Alignment gi|XP_001250931.1| PREDICTED: solute carrier family 25, member ... 62 1e-09
>ref|NP_001039413.1| peroxisomal membrane protein PMP34 [Bos taurus].
Length = 307
Score = 531 bits (1369), Expect = e-151
Identities = 270/307 (87%), Positives = 274/307 (89%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 327
M+SVLSYE+LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG
Sbjct: 1 MSSVLSYESLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 60
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 507
LLAPYRGWFPVISSLCCSNFVYFYTFNSLK VWVKGQHSTTGKDL+VGFVAGVVNVLLTT
Sbjct: 61 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQHSTTGKDLVVGFVAGVVNVLLTT 120
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGI ALWNGTFPSLLLVFNPA
Sbjct: 121 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPA 180
Query: 688 IQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPE 867
IQFMFYEG DVF TTVTYPMQTVQSILRFGRHRLNPE
Sbjct: 181 IQFMFYEGLKRQLLKKRTKLSSLDVFLIGAIAKAVATTVTYPMQTVQSILRFGRHRLNPE 240
Query: 868 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 1047
NRTLGSLRN+LYLLHQRVRRFGI GLYKGLEAKLLQTVLTAALMFLVYEKL A TFMVMG
Sbjct: 241 NRTLGSLRNILYLLHQRVRRFGIAGLYKGLEAKLLQTVLTAALMFLVYEKLMAATFMVMG 300
Query: 1048 LKRASKH 1068
LK KH
Sbjct: 301 LKSTRKH 307
>ref|NP_001039352.1| mitochondrial thiamine pyrophosphate carrier [Bos taurus].
Length = 318
Score = 74.3 bits (181), Expect = 2e-13
Identities = 81/313 (25%), Positives = 125/313 (39%), Gaps = 20/313 (6%)
Frame = +1
Query: 136 GTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMV 300
G P A N+ AVAG+V + + PLD ++R Q+ +R S++ H +
Sbjct: 3 GYDPKADDRDISNVEVAVAGSVSGLVTRVLISPLDVIKIRFQLQIERLSRSDPNAKYHGI 62
Query: 301 L---LEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVG 471
L +I++EEG A ++G P V F +F +L T V +D V
Sbjct: 63 LQAGRQILQEEGPTAFWKGHIPAQLLSIGYGAVQFLSFEAL-TELVHRASVRDARDFSVH 121
Query: 472 FVAGVVNVLLTT----PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISA 639
F+ G ++ + T P+ V+ TR QG P Y + DA + R EG
Sbjct: 122 FLCGGLSACVATLAVHPVDVLRTRFAAQGE--------PRVYKTLRDAVVTMYRTEGPLV 173
Query: 640 LWNGTFPSLLLVFNPA-IQFMFYEGXXXXXXXXXXXXXXXD----VFXXXXXXXXXXTTV 804
+ G P+L+ +F A QF Y + T+
Sbjct: 174 FYKGLNPTLIAIFPYAGFQFSIYSSLKRAYEWALPAEGKKNGNFKNLLCGSGAGVISKTL 233
Query: 805 TYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLH---QRVRRFGIMGLYKGLEAKLLQ 975
TYP+ + L+ G + G +R+ LL Q +R G G +KGL LL+
Sbjct: 234 TYPLDLFKKRLQVG--GFEQARASFGQVRSYKGLLDCAGQVLREEGAQGCFKGLSPSLLK 291
Query: 976 TVLTAALMFLVYE 1014
L+ L+F YE
Sbjct: 292 AALSTGLVFFWYE 304
Score = 57.0 bits (136), Expect = 3e-08
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 3/189 (1%)
Frame = +1
Query: 463 IVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISAL 642
+ G V+G+V +L +PL V+ R +LQ + D Y GI+ A QI+++EG +A
Sbjct: 20 VAGSVSGLVTRVLISPLDVIKIRFQLQIERLSRSD-PNAKYHGILQAGRQILQEEGPTAF 78
Query: 643 WNGTFPS-LLLVFNPAIQFMFYEGXXXXXXXXXXXXXXXDV--FXXXXXXXXXXTTVTYP 813
W G P+ LL + A+QF+ +E F T +P
Sbjct: 79 WKGHIPAQLLSIGYGAVQFLSFEALTELVHRASVRDARDFSVHFLCGGLSACVATLAVHP 138
Query: 814 MQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAA 993
+ +++ R E R +LR+ + ++ R G + YKGL L+ A
Sbjct: 139 VDVLRT-----RFAAQGEPRVYKTLRDAVVTMY---RTEGPLVFYKGLNPTLIAIFPYAG 190
Query: 994 LMFLVYEKL 1020
F +Y L
Sbjct: 191 FQFSIYSSL 199
>ref|NP_001039965.1| ADP/ATP translocase 4 [Bos taurus].
Length = 323
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 5/183 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVD-----EKRKSKTTHMVLLEIIKEEGLLAP 339
L + +G T++ V +PLD AR RL D E+R+ K +++I K +G++
Sbjct: 130 LANLASGGAAGATSLCVVYPLDFARTRLGADIGKGPEERQFKGLGDCIMKIAKSDGIVGL 189
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
Y+G+ + + YF ++++K + K + + + V + +L+ P
Sbjct: 190 YQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKETHFLVSFFIAQVVTTCSGILSYPFDT 249
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFM 699
V R+ +Q + + Y G +D F +I + EGI A + G F ++L A+ +
Sbjct: 250 VRRRMMMQSGEAERQ------YKGTLDCFMKIYQQEGIGAFFRGAFSNILRGTGGALVLV 303
Query: 700 FYE 708
Y+
Sbjct: 304 LYD 306
>ref|NP_001039610.1| brain mitochondrial carrier protein 1 [Bos taurus].
Length = 325
Score = 65.5 bits (158), Expect = 9e-11
Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Frame = +1
Query: 139 TAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTH 294
+A ++ +S N V G + S+ A FP+D + RLQV ++ K +
Sbjct: 29 SATVSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMF 88
Query: 295 MVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVG 471
L I KEEG+LA Y G P + + + SLK ++V+ + T ++I G
Sbjct: 89 HALFRIYKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICG 148
Query: 472 FVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNG 651
V+GV++ + P V+ R++ QG+ F+ +I +F I + EG LW G
Sbjct: 149 VVSGVISSAIANPTDVLKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRG 199
Query: 652 TFPS 663
P+
Sbjct: 200 VVPT 203
>ref|XP_002705973.1| PREDICTED: solute carrier family 25 (mitochondrial carrier, brain),
member 14-like [Bos taurus].
Length = 253
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTHMVLLEIIKEEGLLAPY 342
V G + S+ A FP+D + RLQV ++ K + L I KEEG+LA Y
Sbjct: 10 VYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVLALY 69
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + + SLK ++V+ + T ++I G V+GV++ + P V
Sbjct: 70 SGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSAIANPTDV 129
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPS 663
+ R++ QG+ F+ +I +F I + EG LW G P+
Sbjct: 130 LKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRGVVPT 168
>ref|NP_777081.1| tricarboxylate transport protein, mitochondrial precursor [Bos
taurus].
Length = 311
Score = 63.5 bits (153), Expect = 4e-10
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Frame = +1
Query: 202 GSMTAMTVFFPLDTARLRL---QVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWFPVISSL 372
G A+ V P++T +++ Q K + + EI++E+GL Y+G +
Sbjct: 132 GVPEAVVVVCPMETIKVKFIHDQTSASPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQ 191
Query: 373 CCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIV----GFVAGVVNVLLTTPLWVVNTRLK- 537
+ + F+ SL+ W +G + + ++ G +AG +V TPL V+ TR++
Sbjct: 192 GSNQGIRFFVMTSLRN-WYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQG 250
Query: 538 LQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSL-LLVFNPAIQFMFYE 708
L+ K+RN +D QI+R+EG+ A + GT P L + + AI F+ Y+
Sbjct: 251 LEAHKYRN----------TLDCGLQILRNEGLKAFYKGTVPRLGRVCLDVAIVFIIYD 298
>ref|NP_001096767.1| S-adenosylmethionine mitochondrial carrier protein [Bos taurus].
Length = 274
Score = 63.2 bits (152), Expect = 5e-10
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
+ H +A +VG + A + P + + R QV S T + I+ +EG+ YRG+
Sbjct: 89 VTHMLAASVGEVVACLIRVPSEVVKQRAQVSA---SSGTFHIFSNILCQEGIQGLYRGYK 145
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTG--KDLIVGFVAGVVNVLLTTPLWVVNT 528
+ + V F + SLK +W Q + + G AG +TTPL V T
Sbjct: 146 STVLREIPFSLVQFPLWESLKALWSWRQDRVVDSWQAAVCGAFAGGFAAAVTTPLDVAKT 205
Query: 529 RLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLV 675
R+ L A T I+ A H + R +G+S L+ G FP + +
Sbjct: 206 RIMLAKAGSS------TASGNILSALHAVWRTQGLSGLFAGVFPRMAAI 248
>ref|NP_001094664.1| calcium-binding mitochondrial carrier protein Aralar1 [Bos taurus].
Length = 675
Score = 62.8 bits (151), Expect = 6e-10
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Frame = +1
Query: 124 TRSAGTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVL 303
TR G+ P+ L +AG + + PL+ ++RLQV + + +
Sbjct: 416 TRRDGSIPL--------LAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGP-RVSA 466
Query: 304 LEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIV-GFVA 480
L ++++ GL Y+G + +YF + K + G +L+ G +A
Sbjct: 467 LNVLRDLGLFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGINLLAAGAMA 526
Query: 481 GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGT 654
GV L TP V+ TRL++ + T YSG+ID F +I+R+EG SA W GT
Sbjct: 527 GVPAASLVTPADVIKTRLQVAARAGQ------TTYSGVIDCFRKILREEGPSAFWKGT 578
>ref|NP_001028783.1| mitochondrial uncoupling protein 2 [Bos taurus].
Length = 309
Score = 62.4 bits (150), Expect = 8e-10
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMV----------LLEIIKEEG 327
V + + A + FPLDTA++RLQ+ +R+ +L +++ EG
Sbjct: 15 VKFLGAGTAACIADLITFPLDTAKVRLQIQGERQGPMQAAASAQYRGVLGTILTMVRTEG 74
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLT 504
+ Y G + V ++S+K + KG +H+ G L+ G G + V +
Sbjct: 75 PRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVA 134
Query: 505 TPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSL 666
P VV R + Q Y ++A+ I R+EG LW GT P++
Sbjct: 135 QPTDVVKVRFQAQARAGAGR-----RYQSTVEAYKTIAREEGFRGLWKGTSPNV 183
>ref|XP_001250931.1| PREDICTED: solute carrier family 25, member 32-like, partial [Bos
taurus].
Length = 185
Score = 62.0 bits (149), Expect = 1e-09
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Frame = +1
Query: 487 VNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSL 666
+ + +T PLWV TRL LQ N Y G+ D +I + EG+ L+ G P L
Sbjct: 2 MTLCITNPLWVTKTRLMLQYDSVVNAS--QRQYKGMFDTLVKIYKYEGVRGLYKGFIPGL 59
Query: 667 LLVFNPAIQFMFYE-----GXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQS 831
+ A+QFM YE + TYP Q +
Sbjct: 60 FGTSHGALQFMAYELLKLKYNQHINRLPEAQLSTVEYISVAALSKIFAVAATYPYQVI-- 117
Query: 832 ILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVY 1011
R RL ++ VL ++ + R+ GI G YKG+ L++ + F+VY
Sbjct: 118 -----RARLQDQHM---FYNGVLDVMTKTWRKEGISGFYKGIAPNLIRVTPACCITFVVY 169
Query: 1012 EKLTATTFMVMGLKR 1056
E + + ++GL++
Sbjct: 170 ENV---SHFLLGLRK 181
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,332,656
Number of extensions: 1102593
Number of successful extensions: 3784
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3677
Number of HSP's successfully gapped: 54
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531726.1| PREDICTED: similar to Peroxisomal membrane prot... 530 e-150
Alignment gi|XP_859039.1| PREDICTED: similar to Peroxisomal membrane prot... 318 7e-87
Alignment gi|XP_858963.1| PREDICTED: similar to peroxisomal integral memb... 84 3e-19
Alignment gi|XP_532298.2| PREDICTED: similar to mitochondrial folate tran... 84 4e-16
Alignment gi|XP_540430.1| PREDICTED: similar to Mitochondrial deoxynucleo... 70 3e-12
Alignment gi|XP_540952.2| PREDICTED: similar to solute carrier family 25 ... 70 4e-12
Alignment gi|XP_865863.1| PREDICTED: similar to Brain mitochondrial carri... 66 8e-11
Alignment gi|XP_852497.1| PREDICTED: similar to Brain mitochondrial carri... 66 8e-11
Alignment gi|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Cani... 65 1e-10
Alignment gi|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Cani... 65 1e-10
>ref|XP_531726.1| PREDICTED: similar to Peroxisomal membrane protein PMP34 (34 kDa
peroxisomal membrane protein) (Solute carrier family 25,
member 17) isoform 1 [Canis familiaris].
Length = 307
Score = 530 bits (1364), Expect = e-150
Identities = 270/307 (87%), Positives = 274/307 (89%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 327
MASVLSYE+LVHAVAGAVGS+TAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG
Sbjct: 1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 60
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 507
LLAPYRGWFPVISSLCCSNFVYFYTFNSLK VWVKGQ STTGKDL+VGFVAGVVNVLLTT
Sbjct: 61 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQRSTTGKDLVVGFVAGVVNVLLTT 120
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
PLWVVNTRLKLQGAKFRNEDIVPTNY GIIDAFHQIIRDEGI ALWNGTFPSLLLVFNPA
Sbjct: 121 PLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPA 180
Query: 688 IQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPE 867
IQFMFYEG DVF TTVTYPMQTVQSILRFGRHRLNPE
Sbjct: 181 IQFMFYEGLKRQLLKKRMKLSSLDVFIIGAISKAIATTVTYPMQTVQSILRFGRHRLNPE 240
Query: 868 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 1047
NRTLGSLRNVLYLLHQRV+RFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTA TF VMG
Sbjct: 241 NRTLGSLRNVLYLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMG 300
Query: 1048 LKRASKH 1068
LK A KH
Sbjct: 301 LKSAHKH 307
>ref|XP_859039.1| PREDICTED: similar to Peroxisomal membrane protein PMP34 (34 kDa
peroxisomal membrane protein) (Solute carrier family 25,
member 17) isoform 3 [Canis familiaris].
Length = 211
Score = 318 bits (815), Expect = 7e-87
Identities = 164/196 (83%), Positives = 165/196 (84%)
Frame = +1
Query: 481 GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFP 660
GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNY GIIDAFHQIIRDEGI ALWNGTFP
Sbjct: 16 GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGILALWNGTFP 75
Query: 661 SLLLVFNPAIQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILR 840
SLLLVFNPAIQFMFYEG DVF TTVTYPMQTVQSILR
Sbjct: 76 SLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFIIGAISKAIATTVTYPMQTVQSILR 135
Query: 841 FGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 1020
FGRHRLNPENRTLGSLRNVLYLLHQRV+RFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL
Sbjct: 136 FGRHRLNPENRTLGSLRNVLYLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 195
Query: 1021 TATTFMVMGLKRASKH 1068
TA TF VMGLK A KH
Sbjct: 196 TAATFTVMGLKSAHKH 211
>ref|XP_858963.1| PREDICTED: similar to peroxisomal integral membrane protein 47
isoform 2 [Canis familiaris].
Length = 71
Score = 83.6 bits (205), Expect(2) = 3e-19
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRK 279
MASVLSYE+LVHAVAGAVGS+TAMTVFFPLDTARLRLQVDEKRK
Sbjct: 1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRK 44
Score = 30.8 bits (68), Expect(2) = 3e-19
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 309 DH*RRRPPGTISRVVSS 359
D R+RPPGTISRVVSS
Sbjct: 40 DEKRKRPPGTISRVVSS 56
>ref|XP_532298.2| PREDICTED: similar to mitochondrial folate transporter/carrier
[Canis familiaris].
Length = 328
Score = 83.6 bits (205), Expect = 4e-16
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 9/202 (4%)
Frame = +1
Query: 130 SAGTAPMASV---LSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDE----KRKSKT 288
++G++ +S+ + YENLV V+G V S A+ PLD ++R V + + K K
Sbjct: 9 ASGSSAWSSIFRHVRYENLVAGVSGGVLSNLAL---HPLDLVKIRFAVSDGLELRPKYKG 65
Query: 289 THMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG--QHSTTGKDL 462
L I K +GL Y+G P + S +YF+ +N++K+ +G + + L
Sbjct: 66 ILHCLTTIWKLDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRTERLEATEYL 125
Query: 463 IVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISAL 642
I AG + + +T PLWV TRL LQ N Y G+ D +I + EG+ L
Sbjct: 126 ISAAEAGAMTLCITNPLWVTKTRLMLQYNGVVNSS--QRQYKGMFDTLLKIYKYEGVRGL 183
Query: 643 WNGTFPSLLLVFNPAIQFMFYE 708
+ G P L + A+QFM YE
Sbjct: 184 YKGFIPGLFGTSHGALQFMAYE 205
>ref|XP_540430.1| PREDICTED: similar to Mitochondrial deoxynucleotide carrier (Solute
carrier family 25, member 19) (Mitochondrial uncoupling
protein 1) [Canis familiaris].
Length = 318
Score = 70.5 bits (171), Expect = 3e-12
Identities = 81/313 (25%), Positives = 121/313 (38%), Gaps = 20/313 (6%)
Frame = +1
Query: 136 GTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMV 300
G P A + + AVAG+V + + PLD ++R Q+ +R S++ H +
Sbjct: 3 GYDPKADGRNISSFEVAVAGSVSGLVTRVMISPLDVIKIRFQLQIERLSRSDPGAKYHGI 62
Query: 301 L---LEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVG 471
L +I++EEG A ++G P V F +F L T V +D V
Sbjct: 63 LQAGRQILQEEGPTAFWKGHVPAQLLSIGYGAVQFLSF-ELLTELVHRATKYDARDFSVH 121
Query: 472 FVAGVVNVLLTT----PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISA 639
FV G ++ T P+ V+ TR QG P Y + +A + R EG
Sbjct: 122 FVCGGLSASAATLAVHPVDVLRTRFAAQGE--------PKVYKTLREAVVTMYRTEGPLV 173
Query: 640 LWNGTFPSLLLVFNPA-IQFMFYEGXXXXXXXXXXXXXXXDV----FXXXXXXXXXXTTV 804
+ G P+L+ +F A QF FY T+
Sbjct: 174 FYKGLNPTLIAIFPYAGFQFSFYSALKHVHEWVIPTEGANSENLKNLLCGSGAGVISKTL 233
Query: 805 TYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLL---HQRVRRFGIMGLYKGLEAKLLQ 975
TYP+ + L+ G T G +R+ LL Q +R G G +KGL LL+
Sbjct: 234 TYPLDLFKKRLQVG--GFERARATFGQVRSYKGLLDCARQVLREEGPRGFFKGLSPSLLK 291
Query: 976 TVLTAALMFLVYE 1014
L +F YE
Sbjct: 292 AALATGFVFFWYE 304
>ref|XP_540952.2| PREDICTED: similar to solute carrier family 25 (mitochondrial
carrier; adenine nucleotide translocator), member 31
[Canis familiaris].
Length = 459
Score = 70.1 bits (170), Expect = 4e-12
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 5/183 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVD-----EKRKSKTTHMVLLEIIKEEGLLAP 339
L + +G T++ V +PLD AR RL VD E+R+ K +++I K +G++
Sbjct: 266 LANLASGGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIIKIAKSDGIVGL 325
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
Y+G+ + + YF ++++K + K + + + V + +L+ P
Sbjct: 326 YQGFGVSVQGIVVYRASYFGAYDTVKGLLPKPKETPFLVSFFIAQVVTTCSGILSYPFDT 385
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFM 699
V R+ +Q + V Y G +D F +I + EG++A + G F ++L A+ +
Sbjct: 386 VRRRMMMQSGE------VERQYKGTLDCFVKIYQHEGVNAFFRGAFSNILRGTGGALVLV 439
Query: 700 FYE 708
Y+
Sbjct: 440 LYD 442
>ref|XP_865863.1| PREDICTED: similar to Brain mitochondrial carrier protein-1
(BMCP-1) (Mitochondrial uncoupling protein 5) (UCP 5)
(Solute carrier family 25, member 14) isoform 5 [Canis
familiaris].
Length = 325
Score = 65.9 bits (159), Expect = 8e-11
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Frame = +1
Query: 121 VTRSAGTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVD--------EKR 276
V+ +A ++ +S N V G + S+ A FP+D + RLQV ++
Sbjct: 23 VSGHQNSATVSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEI 82
Query: 277 KSKTTHMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTG 453
K + L I KEEG+LA Y G P + + + SLK ++V+ + T
Sbjct: 83 KYRGMFHALFRIYKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLL 142
Query: 454 KDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGI 633
++I G V+GV++ + P V+ R++ QG+ F+ +I +F I + EG
Sbjct: 143 INMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGT 193
Query: 634 SALWNGTFPS 663
LW G P+
Sbjct: 194 RGLWRGVVPT 203
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCC----SNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVV 522
P VY T L V G T + F G+ L + P+ VV
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLILSGVMGDTILT--HFVSSFTCGLAGALASNPVDVV 259
Query: 523 NTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
TR+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 260 RTRMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 304
>ref|XP_852497.1| PREDICTED: similar to Brain mitochondrial carrier protein-1
(BMCP-1) (Mitochondrial uncoupling protein 5) (UCP 5)
(Solute carrier family 25, member 14) isoform 2 [Canis
familiaris].
Length = 325
Score = 65.9 bits (159), Expect = 8e-11
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 9/190 (4%)
Frame = +1
Query: 121 VTRSAGTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVD--------EKR 276
V+ +A ++ +S N V G + S+ A FP+D + RLQV ++
Sbjct: 23 VSGHQNSATVSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEI 82
Query: 277 KSKTTHMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTG 453
K + L I KEEG+LA Y G P + + + SLK ++V+ + T
Sbjct: 83 KYRGMFHALFRIYKEEGVLALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLL 142
Query: 454 KDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGI 633
++I G V+GV++ + P V+ R++ QG+ F+ +I +F I + EG
Sbjct: 143 INMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGT 193
Query: 634 SALWNGTFPS 663
LW G P+
Sbjct: 194 RGLWRGVVPT 203
Score = 50.4 bits (119), Expect = 3e-06
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCC----SNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVV 522
P VY T L V G T + F G+ L + P+ VV
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLILSGVMGDTILT--HFVSSFTCGLAGALASNPVDVV 259
Query: 523 NTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
TR+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 260 RTRMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 304
>ref|XP_860319.1| PREDICTED: similar to CG2616-PA isoform 5 [Canis familiaris].
Length = 304
Score = 65.5 bits (158), Expect = 1e-10
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 8/297 (2%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHM----VLLEIIKEEGLLAPYRGWF 354
+ G++ + +F PLD + RLQ + + + +LL++++ E +L ++G
Sbjct: 32 LCGSISGTCSTLLFQPLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGIS 91
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRL 534
P I +YF T SLK +++G T + +I+G + V + +P+ V+ TR
Sbjct: 92 PSIVRCVPGIGIYFGTLYSLKQYFLRGHPPTALESVILGVGSRSVAGVCMSPITVIKTR- 150
Query: 535 KLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYE 708
+ ++ Y I A I R EG L++G +LL F+ I MFY
Sbjct: 151 -YESGRY--------GYESIYTALRSIYRSEGHRGLFSGLTATLLRDAPFS-GIYLMFYN 200
Query: 709 GXXXXXXXXXXXXXXXDV--FXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLG 882
V F + VT P +++ ++ + R +G
Sbjct: 201 QTKNIMTHDQLDANLIPVVNFSCGIFAGILASLVTQPADVIKTHMQLSPMKF----RWIG 256
Query: 883 SLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLK 1053
+++ + +G+ G ++G + L+ L AA+ + VYE++ A MGLK
Sbjct: 257 QAMTLIF------KDYGLRGFFQGGVPRALRRALMAAMAWTVYEEMMAK----MGLK 303
>ref|XP_534227.2| PREDICTED: similar to CG2616-PA isoform 1 [Canis familiaris].
Length = 304
Score = 65.5 bits (158), Expect = 1e-10
Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 8/297 (2%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHM----VLLEIIKEEGLLAPYRGWF 354
+ G++ + +F PLD + RLQ + + + +LL++++ E +L ++G
Sbjct: 32 LCGSISGTCSTLLFQPLDLLKTRLQTLQPSAHGSGRIGMLALLLKVVRTESILGLWKGIS 91
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRL 534
P I +YF T SLK +++G T + +I+G + V + +P+ V+ TR
Sbjct: 92 PSIVRCVPGIGIYFGTLYSLKQYFLRGHPPTALESVILGVGSRSVAGVCMSPITVIKTR- 150
Query: 535 KLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYE 708
+ ++ Y I A I R EG L++G +LL F+ I MFY
Sbjct: 151 -YESGRY--------GYESIYTALRSIYRSEGHRGLFSGLTATLLRDAPFS-GIYLMFYN 200
Query: 709 GXXXXXXXXXXXXXXXDV--FXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLG 882
V F + VT P +++ ++ + R +G
Sbjct: 201 QTKNIMTHDQLDANLIPVVNFSCGIFAGILASLVTQPADVIKTHMQLSPMKF----RWIG 256
Query: 883 SLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLK 1053
+++ + +G+ G ++G + L+ L AA+ + VYE++ A MGLK
Sbjct: 257 QAMTLIF------KDYGLRGFFQGGVPRALRRALMAAMAWTVYEEMMAK----MGLK 303
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,395,083
Number of extensions: 1144700
Number of successful extensions: 4198
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 4043
Number of HSP's successfully gapped: 77
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006349.1| peroxisomal membrane protein PMP34 [Homo sapien... 534 e-152
Alignment gi|NP_110407.2| mitochondrial folate transporter/carrier [Homo ... 93 4e-19
Alignment gi|NP_003347.1| mitochondrial uncoupling protein 3 isoform UCP3... 69 7e-12
Alignment gi|NP_112581.1| ADP/ATP translocase 4 [Homo sapiens]. 69 9e-12
Alignment gi|NP_001119594.1| mitochondrial thiamine pyrophosphate carrier... 67 3e-11
Alignment gi|NP_001119593.1| mitochondrial thiamine pyrophosphate carrier... 67 3e-11
Alignment gi|NP_068380.3| mitochondrial thiamine pyrophosphate carrier [H... 67 3e-11
Alignment gi|NP_073714.1| mitochondrial uncoupling protein 3 isoform UCP3... 67 4e-11
Alignment gi|NP_003942.1| brain mitochondrial carrier protein 1 isoform U... 65 1e-10
Alignment gi|NP_073721.1| brain mitochondrial carrier protein 1 isoform U... 65 1e-10
>ref|NP_006349.1| peroxisomal membrane protein PMP34 [Homo sapiens].
Length = 307
Score = 534 bits (1376), Expect = e-152
Identities = 270/307 (87%), Positives = 277/307 (90%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 327
MASVLSYE+LVHAVAGAVGS+TAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG
Sbjct: 1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 60
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 507
LLAPYRGWFPVISSLCCSNFVYFYTFNSLK +WVKGQHSTTGKDL+VGFVAGVVNVLLTT
Sbjct: 61 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKALWVKGQHSTTGKDLVVGFVAGVVNVLLTT 120
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
PLWVVNTRLKLQGAKFRNEDIVPTNY GIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA
Sbjct: 121 PLWVVNTRLKLQGAKFRNEDIVPTNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 180
Query: 688 IQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPE 867
IQFMFYEG DVF TTVTYP+QTVQSILRFGRHRLNPE
Sbjct: 181 IQFMFYEGLKRQLLKKRMKLSSLDVFIIGAVAKAIATTVTYPLQTVQSILRFGRHRLNPE 240
Query: 868 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 1047
NRTLGSLRN+LYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTA TF VMG
Sbjct: 241 NRTLGSLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMG 300
Query: 1048 LKRASKH 1068
LKRA +H
Sbjct: 301 LKRAHQH 307
>ref|NP_110407.2| mitochondrial folate transporter/carrier [Homo sapiens].
Length = 315
Score = 93.2 bits (230), Expect = 4e-19
Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 11/322 (3%)
Frame = +1
Query: 91 STGCGSCWRTVTRSAGTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDE 270
S S W TV R + YENL+ V+G V S A+ PLD ++R V +
Sbjct: 7 SASGSSAWSTVFRH---------VRYENLIAGVSGGVLSNLAL---HPLDLVKIRFAVSD 54
Query: 271 KRKSKTTHMVLLEII----KEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG- 435
+ + + +L + K +GL Y+G P I S +YF+ +N++K+ +G
Sbjct: 55 GLELRPKYNGILHCLTTIWKLDGLRGLYQGVTPNIWGAGLSWGLYFFFYNAIKSYKTEGR 114
Query: 436 -QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQ 612
+ + L+ AG + + +T PLWV TRL LQ N Y G+ D +
Sbjct: 115 AERLEATEYLVSAAEAGAMTLCITNPLWVTKTRLMLQYDAVVNSP--HRQYKGMFDTLVK 172
Query: 613 IIRDEGISALWNGTFPSLLLVFNPAIQFMFYE-----GXXXXXXXXXXXXXXXDVFXXXX 777
I + EG+ L+ G P L + A+QFM YE +
Sbjct: 173 IYKYEGVRGLYKGFVPGLFGTSHGALQFMAYELLKLKYNQHINRLPEAQLSTVEYISVAA 232
Query: 778 XXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGL 957
TYP Q V R RL ++ V+ ++ + R+ G+ G YKG+
Sbjct: 233 LSKIFAVAATYPYQVV-------RARLQDQHMFYS---GVIDVITKTWRKEGVGGFYKGI 282
Query: 958 EAKLLQTVLTAALMFLVYEKLT 1023
L++ + F+VYE ++
Sbjct: 283 APNLIRVTPACCITFVVYENVS 304
>ref|NP_003347.1| mitochondrial uncoupling protein 3 isoform UCP3L [Homo sapiens].
Length = 312
Score = 69.3 bits (168), Expect = 7e-12
Identities = 70/292 (23%), Positives = 118/292 (40%), Gaps = 13/292 (4%)
Frame = +1
Query: 223 VFFPLDTARLRLQVD-EKRKSKTTHMV--------LLEIIKEEGLLAPYRGWFPVISSLC 375
V FPLDTA++RLQ+ E + +T +V +L +++ EG +PY G +
Sbjct: 30 VTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQM 89
Query: 376 CSNFVYFYTFNSLKTVWV-KG-QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGA 549
+ ++S+K V+ KG +S+ ++ G G + V P VV R Q +
Sbjct: 90 SFASIRIGLYDSVKQVYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRF--QAS 147
Query: 550 KFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYEGXXXX 723
YSG +DA+ I R+EG+ LW GT P+++ + N A +
Sbjct: 148 IHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMRNAIVNCAEVVTYDILKEKL 207
Query: 724 XXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLY 903
F T V P+ V++ R+ +P + L ++
Sbjct: 208 LDYHLLTDNFPCHFVSAFGAGFCATVVASPVDVVKT-----RYMNSPPGQYFSPLDCMIK 262
Query: 904 LLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLKRA 1059
++ Q G YKG L+ +MF+ YE+L V L+ +
Sbjct: 263 MVAQE----GPTAFYKGFTPSFLRLGSWNVVMFVTYEQLKRALMKVQMLRES 310
>ref|NP_112581.1| ADP/ATP translocase 4 [Homo sapiens].
Length = 315
Score = 68.9 bits (167), Expect = 9e-12
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 5/183 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVD-----EKRKSKTTHMVLLEIIKEEGLLAP 339
L + +G T++ V +PLD AR RL VD E+R+ K +++I K +G+
Sbjct: 126 LANLASGGAAGATSLCVVYPLDFARTRLGVDIGKGPEERQFKGLGDCIMKIAKSDGIAGL 185
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
Y+G+ + + YF ++++K + K + + + V + +L+ P
Sbjct: 186 YQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKKTPFLVSFFIAQVVTTCSGILSYPFDT 245
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFM 699
V R+ +Q + + + Y G +D F +I + EGIS+ + G F ++L A+ +
Sbjct: 246 VRRRMMMQSGEAKRQ------YKGTLDCFVKIYQHEGISSFFRGAFSNVLRGTGGALVLV 299
Query: 700 FYE 708
Y+
Sbjct: 300 LYD 302
>ref|NP_001119594.1| mitochondrial thiamine pyrophosphate carrier [Homo sapiens].
Length = 320
Score = 67.4 bits (163), Expect = 3e-11
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 20/297 (6%)
Frame = +1
Query: 184 AVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMVL---LEIIKEEGLLAP 339
AVAG+V + + P D ++R Q+ +R S++ H +L +I++EEG A
Sbjct: 19 AVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAF 78
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT---- 507
++G P V F +F L + +G ++ V FV G + + T
Sbjct: 79 WKGHVPAQILSIGYGAVQFLSFEMLTELVHRGS-VYDAREFSVHFVCGGLAACMATLTVH 137
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
P+ V+ TR QG P Y+ + A + R EG + G P+L+ +F A
Sbjct: 138 PVDVLRTRFAAQGE--------PKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYA 189
Query: 688 -IQFMFYEGXXXXXXXXXXXXXXXDV----FXXXXXXXXXXTTVTYPMQTVQSILRFGRH 852
+QF Y + T+TYP+ + L+ G
Sbjct: 190 GLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVG-- 247
Query: 853 RLNPENRTLGSLRNVLYLL---HQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYE 1014
G +R L+ Q +++ G +G +KGL LL+ L+ MF YE
Sbjct: 248 GFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYE 304
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVD-EKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
VH V G + + A P+D R R E + T + + + EG Y+G
Sbjct: 120 VHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLA 179
Query: 355 PVISSLCCSNFVYFYTFNSLKTVW-----VKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
P + ++ + F ++SLK ++ +G+ + ++L+ G AGV++ LT PL +
Sbjct: 180 PTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDL 239
Query: 520 VNTRLKLQGAKFRNEDIVPTN-YSGIIDAFHQIIRDEGISALWNGTFPSLL-LVFNPAIQ 693
RL++ G + Y G++D Q+++ EG + G PSLL +
Sbjct: 240 FKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFM 299
Query: 694 FMFYE 708
F YE
Sbjct: 300 FFSYE 304
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Frame = +1
Query: 433 GQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQ 612
G+++T + + G V+G+V L +P V+ R +LQ + D Y GI+ A Q
Sbjct: 10 GRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSD-PSAKYHGILQASRQ 68
Query: 613 IIRDEGISALWNGTFPS-LLLVFNPAIQFMFYE--GXXXXXXXXXXXXXXXDVFXXXXXX 783
I+++EG +A W G P+ +L + A+QF+ +E F
Sbjct: 69 ILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLA 128
Query: 784 XXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEA 963
T +P+ +++ R E + +LR+ + ++ R G YKGL
Sbjct: 129 ACMATLTVHPVDVLRT-----RFAAQGEPKVYNTLRHAVGTMY---RSEGPQVFYKGLAP 180
Query: 964 KLLQTVLTAALMFLVYEKL 1020
L+ A L F Y L
Sbjct: 181 TLIAIFPYAGLQFSCYSSL 199
>ref|NP_001119593.1| mitochondrial thiamine pyrophosphate carrier [Homo sapiens].
Length = 320
Score = 67.4 bits (163), Expect = 3e-11
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 20/297 (6%)
Frame = +1
Query: 184 AVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMVL---LEIIKEEGLLAP 339
AVAG+V + + P D ++R Q+ +R S++ H +L +I++EEG A
Sbjct: 19 AVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAF 78
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT---- 507
++G P V F +F L + +G ++ V FV G + + T
Sbjct: 79 WKGHVPAQILSIGYGAVQFLSFEMLTELVHRGS-VYDAREFSVHFVCGGLAACMATLTVH 137
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
P+ V+ TR QG P Y+ + A + R EG + G P+L+ +F A
Sbjct: 138 PVDVLRTRFAAQGE--------PKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYA 189
Query: 688 -IQFMFYEGXXXXXXXXXXXXXXXDV----FXXXXXXXXXXTTVTYPMQTVQSILRFGRH 852
+QF Y + T+TYP+ + L+ G
Sbjct: 190 GLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVG-- 247
Query: 853 RLNPENRTLGSLRNVLYLL---HQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYE 1014
G +R L+ Q +++ G +G +KGL LL+ L+ MF YE
Sbjct: 248 GFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYE 304
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVD-EKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
VH V G + + A P+D R R E + T + + + EG Y+G
Sbjct: 120 VHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLA 179
Query: 355 PVISSLCCSNFVYFYTFNSLKTVW-----VKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
P + ++ + F ++SLK ++ +G+ + ++L+ G AGV++ LT PL +
Sbjct: 180 PTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDL 239
Query: 520 VNTRLKLQGAKFRNEDIVPTN-YSGIIDAFHQIIRDEGISALWNGTFPSLL-LVFNPAIQ 693
RL++ G + Y G++D Q+++ EG + G PSLL +
Sbjct: 240 FKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFM 299
Query: 694 FMFYE 708
F YE
Sbjct: 300 FFSYE 304
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Frame = +1
Query: 433 GQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQ 612
G+++T + + G V+G+V L +P V+ R +LQ + D Y GI+ A Q
Sbjct: 10 GRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSD-PSAKYHGILQASRQ 68
Query: 613 IIRDEGISALWNGTFPS-LLLVFNPAIQFMFYE--GXXXXXXXXXXXXXXXDVFXXXXXX 783
I+++EG +A W G P+ +L + A+QF+ +E F
Sbjct: 69 ILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLA 128
Query: 784 XXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEA 963
T +P+ +++ R E + +LR+ + ++ R G YKGL
Sbjct: 129 ACMATLTVHPVDVLRT-----RFAAQGEPKVYNTLRHAVGTMY---RSEGPQVFYKGLAP 180
Query: 964 KLLQTVLTAALMFLVYEKL 1020
L+ A L F Y L
Sbjct: 181 TLIAIFPYAGLQFSCYSSL 199
>ref|NP_068380.3| mitochondrial thiamine pyrophosphate carrier [Homo sapiens].
Length = 320
Score = 67.4 bits (163), Expect = 3e-11
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 20/297 (6%)
Frame = +1
Query: 184 AVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMVL---LEIIKEEGLLAP 339
AVAG+V + + P D ++R Q+ +R S++ H +L +I++EEG A
Sbjct: 19 AVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSDPSAKYHGILQASRQILQEEGPTAF 78
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT---- 507
++G P V F +F L + +G ++ V FV G + + T
Sbjct: 79 WKGHVPAQILSIGYGAVQFLSFEMLTELVHRGS-VYDAREFSVHFVCGGLAACMATLTVH 137
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
P+ V+ TR QG P Y+ + A + R EG + G P+L+ +F A
Sbjct: 138 PVDVLRTRFAAQGE--------PKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYA 189
Query: 688 -IQFMFYEGXXXXXXXXXXXXXXXDV----FXXXXXXXXXXTTVTYPMQTVQSILRFGRH 852
+QF Y + T+TYP+ + L+ G
Sbjct: 190 GLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVG-- 247
Query: 853 RLNPENRTLGSLRNVLYLL---HQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYE 1014
G +R L+ Q +++ G +G +KGL LL+ L+ MF YE
Sbjct: 248 GFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFSYE 304
Score = 59.3 bits (142), Expect = 7e-09
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 8/185 (4%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVD-EKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
VH V G + + A P+D R R E + T + + + EG Y+G
Sbjct: 120 VHFVCGGLAACMATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLA 179
Query: 355 PVISSLCCSNFVYFYTFNSLKTVW-----VKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
P + ++ + F ++SLK ++ +G+ + ++L+ G AGV++ LT PL +
Sbjct: 180 PTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLCGSGAGVISKTLTYPLDL 239
Query: 520 VNTRLKLQGAKFRNEDIVPTN-YSGIIDAFHQIIRDEGISALWNGTFPSLL-LVFNPAIQ 693
RL++ G + Y G++D Q+++ EG + G PSLL +
Sbjct: 240 FKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFM 299
Query: 694 FMFYE 708
F YE
Sbjct: 300 FFSYE 304
Score = 54.3 bits (129), Expect = 2e-07
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 3/199 (1%)
Frame = +1
Query: 433 GQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQ 612
G+++T + + G V+G+V L +P V+ R +LQ + D Y GI+ A Q
Sbjct: 10 GRNNTKFQVAVAGSVSGLVTRALISPFDVIKIRFQLQHERLSRSD-PSAKYHGILQASRQ 68
Query: 613 IIRDEGISALWNGTFPS-LLLVFNPAIQFMFYE--GXXXXXXXXXXXXXXXDVFXXXXXX 783
I+++EG +A W G P+ +L + A+QF+ +E F
Sbjct: 69 ILQEEGPTAFWKGHVPAQILSIGYGAVQFLSFEMLTELVHRGSVYDAREFSVHFVCGGLA 128
Query: 784 XXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEA 963
T +P+ +++ R E + +LR+ + ++ R G YKGL
Sbjct: 129 ACMATLTVHPVDVLRT-----RFAAQGEPKVYNTLRHAVGTMY---RSEGPQVFYKGLAP 180
Query: 964 KLLQTVLTAALMFLVYEKL 1020
L+ A L F Y L
Sbjct: 181 TLIAIFPYAGLQFSCYSSL 199
>ref|NP_073714.1| mitochondrial uncoupling protein 3 isoform UCP3S [Homo sapiens].
Length = 275
Score = 66.6 bits (161), Expect = 4e-11
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Frame = +1
Query: 223 VFFPLDTARLRLQVD-EKRKSKTTHMV--------LLEIIKEEGLLAPYRGWFPVISSLC 375
V FPLDTA++RLQ+ E + +T +V +L +++ EG +PY G +
Sbjct: 30 VTFPLDTAKVRLQIQGENQAVQTARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQM 89
Query: 376 CSNFVYFYTFNSLKTVWV-KG-QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGA 549
+ ++S+K V+ KG +S+ ++ G G + V P VV R Q +
Sbjct: 90 SFASIRIGLYDSVKQVYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRF--QAS 147
Query: 550 KFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
YSG +DA+ I R+EG+ LW GT P+++
Sbjct: 148 IHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIM 187
>ref|NP_003942.1| brain mitochondrial carrier protein 1 isoform UCP5L [Homo sapiens].
Length = 325
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTHMVLLEIIKEEGLLAPY 342
V G + S+ A FP+D + RLQV ++ K + L I KEEG+LA Y
Sbjct: 45 VYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDARFKEIKYRGMFHALFRICKEEGVLALY 104
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + + SLK ++V+ + T ++I G V+GV++ + P V
Sbjct: 105 SGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDV 164
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPS 663
+ R++ QG+ F+ +I +F I + EG LW G P+
Sbjct: 165 LKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRGVVPT 203
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKG--QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNT 528
P V ++ K + T + F G+ L + P+ VV T
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHFVSSFTCGLAGALASNPVDVVRT 261
Query: 529 RLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
R+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 262 RMMNQRAIVGHVDL----YKGTVDGILKMWKHEGFFALYKGFWPNWL 304
>ref|NP_073721.1| brain mitochondrial carrier protein 1 isoform UCP5S [Homo sapiens].
Length = 322
Score = 65.1 bits (157), Expect = 1e-10
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTHMVLLEIIKEEGLLAPY 342
V G + S+ A FP+D + RLQV ++ K + L I KEEG+LA Y
Sbjct: 42 VYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDARFKEIKYRGMFHALFRICKEEGVLALY 101
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + + SLK ++V+ + T ++I G V+GV++ + P V
Sbjct: 102 SGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDV 161
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPS 663
+ R++ QG+ F+ +I +F I + EG LW G P+
Sbjct: 162 LKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRGVVPT 200
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 139 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 198
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKG--QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNT 528
P V ++ K + T + F G+ L + P+ VV T
Sbjct: 199 PTAQRAAIVVGVELPVYDITKKHLILSGMMGDTILTHFVSSFTCGLAGALASNPVDVVRT 258
Query: 529 RLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
R+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 259 RMMNQRAIVGHVDL----YKGTVDGILKMWKHEGFFALYKGFWPNWL 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,581,771
Number of extensions: 1129565
Number of successful extensions: 4110
Number of sequences better than 1.0e-05: 50
Number of HSP's gapped: 3993
Number of HSP's successfully gapped: 70
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035529.1| peroxisomal membrane protein PMP34 [Mus musculu... 520 e-148
Alignment gi|NP_765990.2| mitochondrial folate transporter/carrier [Mus m... 99 9e-21
Alignment gi|NP_848473.2| ADP/ATP translocase 4 [Mus musculus]. 70 3e-12
Alignment gi|NP_033490.1| mitochondrial uncoupling protein 3 [Mus musculu... 70 4e-12
Alignment gi|NP_080347.1| mitochondrial thiamine pyrophosphate carrier [M... 67 4e-11
Alignment gi|NP_080531.2| S-adenosylmethionine mitochondrial carrier prot... 67 4e-11
Alignment gi|NP_035528.1| brain mitochondrial carrier protein 1 isoform 2... 67 4e-11
Alignment gi|NP_001159922.1| brain mitochondrial carrier protein 1 isofor... 67 4e-11
Alignment gi|NP_035801.3| mitochondrial uncoupling protein 2 [Mus musculu... 63 5e-10
Alignment gi|NP_080508.1| kidney mitochondrial carrier protein 1 [Mus mus... 62 1e-09
>ref|NP_035529.1| peroxisomal membrane protein PMP34 [Mus musculus].
Length = 307
Score = 520 bits (1340), Expect = e-148
Identities = 265/307 (86%), Positives = 271/307 (88%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 327
MASVLSYE+LVHAVAGAVGS+TAMTVFFPLDTARLRLQVDEKRKSKTTH VLLEIIKEEG
Sbjct: 1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHAVLLEIIKEEG 60
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 507
LLAPYRGWFPVISSLCCSNFVYFYTFNSLK VWVKGQ S+TGKDL+VGFVAGVVNVLLTT
Sbjct: 61 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQRSSTGKDLVVGFVAGVVNVLLTT 120
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
PLWVVNTRLKLQGAKFRNEDI+PTNY GIIDAFHQIIRDEGI ALWNGTFPSLLLVFNPA
Sbjct: 121 PLWVVNTRLKLQGAKFRNEDIIPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPA 180
Query: 688 IQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPE 867
IQFMFYEG DVF TTVTYPMQTVQSILRFGRHRLNPE
Sbjct: 181 IQFMFYEGLKRQLLKKRMKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILRFGRHRLNPE 240
Query: 868 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 1047
NRTLGSLRNVL LLHQRV+RFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTA TF VMG
Sbjct: 241 NRTLGSLRNVLSLLHQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAATFTVMG 300
Query: 1048 LKRASKH 1068
LK KH
Sbjct: 301 LKSTHKH 307
>ref|NP_765990.2| mitochondrial folate transporter/carrier [Mus musculus].
Length = 316
Score = 98.6 bits (244), Expect = 9e-21
Identities = 87/312 (27%), Positives = 138/312 (44%), Gaps = 14/312 (4%)
Frame = +1
Query: 130 SAGTAPMASV---LSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDE----KRKSKT 288
+AG+A ++V + YENLV V+G V S A+ PLD ++R V + + K K
Sbjct: 8 AAGSAAWSAVFRHVRYENLVAGVSGGVLSNLAL---HPLDLVKIRFAVSDGLEVRPKYKG 64
Query: 289 THMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTG--KDL 462
L I K +GL Y+G P + S +YF+ +N++K+ +G+ + L
Sbjct: 65 ILHCLATIWKVDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAEQLEPLEYL 124
Query: 463 IVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISAL 642
+ AG + + +T PLWV TRL LQ + Y G+ DA +I + EG+ L
Sbjct: 125 VSAAEAGAMTLCITNPLWVTKTRLMLQYGGVASPS--QRQYKGMFDALVKIYKYEGVRGL 182
Query: 643 WNGTFPSLLLVFNPAIQFMFYE-----GXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVT 807
+ G P L + A+QFM YE + T
Sbjct: 183 YKGFVPGLFGTSHGALQFMAYELLKLKYNKHINRLPEAQLSTAEYISVAALSKIFAVAAT 242
Query: 808 YPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLT 987
YP Q V R RL ++ + G + +V + + R+ GI G YKG+ L++
Sbjct: 243 YPYQVV-------RARLQDQHVSYGGVTDV---ITKTWRKEGIGGFYKGIAPNLIRVTPA 292
Query: 988 AALMFLVYEKLT 1023
+ F+VYE ++
Sbjct: 293 CCITFVVYENVS 304
>ref|NP_848473.2| ADP/ATP translocase 4 [Mus musculus].
Length = 320
Score = 70.1 bits (170), Expect = 3e-12
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 5/183 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVD-----EKRKSKTTHMVLLEIIKEEGLLAP 339
L + +G T++ V +PLD AR RL VD E+R+ +++I K +GL+
Sbjct: 127 LANLASGGAAGATSLCVVYPLDFARTRLGVDIGKGPEQRQFTGLGDCIMKIAKSDGLIGL 186
Query: 340 YRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
Y+G+ + + YF ++++K + K + + I+ + + +L+ P
Sbjct: 187 YQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKETPFLVSFIIAQIVTTCSGILSYPFDT 246
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFM 699
V R+ +Q + + Y G ID F +I R EG+ A + G F ++L A+ +
Sbjct: 247 VRRRMMMQSGESDRQ------YKGTIDCFLKIYRHEGVPAFFRGAFSNILRGTGGALVLV 300
Query: 700 FYE 708
Y+
Sbjct: 301 LYD 303
>ref|NP_033490.1| mitochondrial uncoupling protein 3 [Mus musculus].
Length = 308
Score = 69.7 bits (169), Expect = 4e-12
Identities = 68/287 (23%), Positives = 112/287 (39%), Gaps = 10/287 (3%)
Frame = +1
Query: 229 FPLDTARLRLQVDEKRKSKTTHM------VLLEIIKEEGLLAPYRGWFPVISSLCCSNFV 390
FPLDTA++RLQ+ + + +L +++ EG +PY G + +
Sbjct: 32 FPLDTAKVRLQIQGENPGAQSVQYRGVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASI 91
Query: 391 YFYTFNSLKTVWV-KG-QHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNE 564
++S+K + KG HS+ ++ G G + V P VV R + A R
Sbjct: 92 RIGLYDSVKQFYTPKGADHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQ---AMIRLG 148
Query: 565 DIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYEGXXXXXXXXX 738
Y G +DA+ I R+EG+ LW GT+P++ + N A +
Sbjct: 149 TGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITRNAIVNCAEMVTYDIIKEKLLESHL 208
Query: 739 XXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQR 918
F T V P+ V++ N LG R+ L+ + +
Sbjct: 209 FTDNFPCHFVSAFGAGFCATVVASPVDVVKT---------RYMNAPLGRYRSPLHCMLKM 259
Query: 919 VRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLKRA 1059
V + G YKG L+ +MF+ YE+L V L+ +
Sbjct: 260 VAQEGPTAFYKGFVPSFLRLGAWNVMMFVTYEQLKRALMKVQVLRES 306
>ref|NP_080347.1| mitochondrial thiamine pyrophosphate carrier [Mus musculus].
Length = 318
Score = 66.6 bits (161), Expect = 4e-11
Identities = 74/307 (24%), Positives = 115/307 (37%), Gaps = 19/307 (6%)
Frame = +1
Query: 151 ASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQV--------DEKRKSKTTHMVLL 306
A V S L AVAG+V + PLD ++R Q+ D K
Sbjct: 8 ADVRSNSKLEVAVAGSVSGFVTRALISPLDVIKIRFQLQIERLCPSDPNAKYHGIFQAAK 67
Query: 307 EIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQ----HSTTGKDLIVGF 474
+I++EEG A ++G P V F F L + + H + + G
Sbjct: 68 QILQEEGPRAFWKGHVPAQILSIGYGAVQFLAFEELTELLYQANLYQTHQFSAHFVCGGL 127
Query: 475 VAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGT 654
AG L P+ V+ TRL QG P Y+ + +A + + EG + G
Sbjct: 128 SAGTA-TLTVHPVDVLRTRLAAQGE--------PKIYNNLREAIRTMYKTEGPFVFYKGL 178
Query: 655 FPSLLLVFNPA-IQFMFY----EGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQ 819
P+++ +F A +QF Y T TYP+
Sbjct: 179 TPTVIAIFPYAGLQFSCYRSLKRAYDWLIPPDGKQTGNLKNLLCGCGSGVISKTFTYPLD 238
Query: 820 TVQSILRFG--RHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAA 993
++ L+ G H + + + S R +L L Q ++ G G +KGL L++ L+
Sbjct: 239 LIKKRLQVGGFEHARSAFGQ-VRSYRGLLDLTQQVLQEEGTRGFFKGLSPSLMKAALSTG 297
Query: 994 LMFLVYE 1014
MF YE
Sbjct: 298 FMFFWYE 304
>ref|NP_080531.2| S-adenosylmethionine mitochondrial carrier protein [Mus musculus].
Length = 274
Score = 66.6 bits (161), Expect = 4e-11
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 2/176 (1%)
Frame = +1
Query: 154 SVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLL 333
S ++ + H +A + G + A + P + + R QV K T + L I+ EEG+
Sbjct: 82 STSHFKPVKHMLAASTGEVVACLIRVPSEVVKQRAQVSASSK---TLQIFLTILSEEGIQ 138
Query: 334 APYRGWFPVISSLCCSNFVYFYTFNSLKTVWV--KGQHSTTGKDLIVGFVAGVVNVLLTT 507
YRG+ + + V F + SLK +W +G + + + G AG +TT
Sbjct: 139 GLYRGYKSTVLREIPFSLVQFPLWESLKALWAWRRGHVVDSWQSAVCGAFAGGFAAAVTT 198
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLV 675
PL V TR+ L A T ++ A H + R +G++ L+ G P + +
Sbjct: 199 PLDVAKTRIMLAKAG------SSTAVGNVLSAMHGVWRSQGLAGLFAGVLPRMAAI 248
>ref|NP_035528.1| brain mitochondrial carrier protein 1 isoform 2 [Mus musculus].
Length = 322
Score = 66.6 bits (161), Expect = 4e-11
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Frame = +1
Query: 151 ASVLSYE----NLVHAVAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTH 294
+S LS+E N V G + S+ A FP+D + RLQV ++ K +
Sbjct: 26 SSTLSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMF 85
Query: 295 MVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVG 471
L I KEEG+LA Y G P + + + SLK ++V+ + T ++I G
Sbjct: 86 HALFRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICG 145
Query: 472 FVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNG 651
V+GV++ + P V+ R++ QG+ F+ +I +F I + EG LW G
Sbjct: 146 VVSGVISSTIANPTDVLKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRG 196
Query: 652 TFPS 663
P+
Sbjct: 197 VVPT 200
Score = 50.4 bits (119), Expect = 3e-06
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 139 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 198
Query: 355 PVISSLCCSNFVYFYTFN-SLKTVWVKGQ-HSTTGKDLIVGFVAGVVNVLLTTPLWVVNT 528
P V ++ + K + V G T + F G+ L + P+ VV T
Sbjct: 199 PTAQRAAIVVGVELPVYDITKKHLIVSGMLGDTILTHFVSSFTCGLAGALASNPVDVVRT 258
Query: 529 RLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
R+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 259 RMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 301
>ref|NP_001159922.1| brain mitochondrial carrier protein 1 isoform 1 [Mus musculus].
Length = 325
Score = 66.6 bits (161), Expect = 4e-11
Identities = 53/184 (28%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Frame = +1
Query: 151 ASVLSYE----NLVHAVAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTH 294
+S LS+E N V G + S+ A FP+D + RLQV ++ K +
Sbjct: 29 SSTLSHEMSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMF 88
Query: 295 MVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVG 471
L I KEEG+LA Y G P + + + SLK ++V+ + T ++I G
Sbjct: 89 HALFRIYKEEGILALYSGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICG 148
Query: 472 FVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNG 651
V+GV++ + P V+ R++ QG+ F+ +I +F I + EG LW G
Sbjct: 149 VVSGVISSTIANPTDVLKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRG 199
Query: 652 TFPS 663
P+
Sbjct: 200 VVPT 203
Score = 50.4 bits (119), Expect = 3e-06
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 2/167 (1%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCCSNFVYFYTFN-SLKTVWVKGQ-HSTTGKDLIVGFVAGVVNVLLTTPLWVVNT 528
P V ++ + K + V G T + F G+ L + P+ VV T
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLIVSGMLGDTILTHFVSSFTCGLAGALASNPVDVVRT 261
Query: 529 RLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
R+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 262 RMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 304
>ref|NP_035801.3| mitochondrial uncoupling protein 2 [Mus musculus].
Length = 309
Score = 62.8 bits (151), Expect = 5e-10
Identities = 64/294 (21%), Positives = 108/294 (36%), Gaps = 13/294 (4%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMV----------LLEIIKEEG 327
V + + A + FPLDTA++RLQ+ + + +L +++ EG
Sbjct: 15 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 74
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLT 504
+ Y G + V ++S+K + KG +H+ G L+ G G + V +
Sbjct: 75 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVA 134
Query: 505 TPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVF 678
P VV R + Q Y ++A+ I R+EGI LW GT P++ +
Sbjct: 135 QPTDVVKVRFQAQARAGGGR-----RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 189
Query: 679 NPAIQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRL 858
N A + F T + P+ V++
Sbjct: 190 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT--------- 240
Query: 859 NPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 1020
N LG + + +R+ G YKG L+ +MF+ YE+L
Sbjct: 241 RYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 294
>ref|NP_080508.1| kidney mitochondrial carrier protein 1 [Mus musculus].
Length = 291
Score = 61.6 bits (148), Expect = 1e-09
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMV--------LLEIIKEEGLLAPY 342
V G + S+TA FP+D + RLQ+ + + L+ I +EEGL A Y
Sbjct: 10 VYGGLASITAECGTFPIDLTKTRLQIQGQTNDANFREIRYRGMLHALMRIGREEGLKALY 69
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWV-KGQHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + T+ SLK + V + + T +++ G ++GV++ + P V
Sbjct: 70 SGIAPAMLRQASYGTIKIGTYQSLKRLAVERPEDETLLVNVVCGILSGVISSAIANPTDV 129
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNG 651
+ R++ Q + + G+ID+F I + EG LW G
Sbjct: 130 LKIRMQAQNSAVQG---------GMIDSFMSIYQQEGTRGLWKG 164
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,787,903
Number of extensions: 955459
Number of successful extensions: 3348
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 3252
Number of HSP's successfully gapped: 54
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126052.1| PREDICTED: peroxisomal membrane protein PMP3... 552 e-157
Alignment gi|XP_003126053.1| PREDICTED: peroxisomal membrane protein PMP3... 332 3e-91
Alignment gi|XP_003355049.1| PREDICTED: mitochondrial folate transporter/... 101 1e-21
Alignment gi|NP_001157986.1| mitochondrial thiamine pyrophosphate carrier... 84 1e-16
Alignment gi|NP_999214.1| mitochondrial uncoupling protein 3 [Sus scrofa]. 68 1e-11
Alignment gi|NP_999454.1| mitochondrial uncoupling protein 2 [Sus scrofa]. 65 8e-11
Alignment gi|XP_003360489.1| PREDICTED: brain mitochondrial carrier prote... 65 8e-11
Alignment gi|XP_003135426.2| PREDICTED: brain mitochondrial carrier prote... 65 8e-11
Alignment gi|NP_001186292.1| calcium-binding mitochondrial carrier protei... 65 1e-10
Alignment gi|XP_003358423.1| PREDICTED: solute carrier family 25 member 3... 64 1e-10
>ref|XP_003126052.1| PREDICTED: peroxisomal membrane protein PMP34-like isoform 1 [Sus
scrofa].
Length = 307
Score = 552 bits (1422), Expect = e-157
Identities = 282/307 (91%), Positives = 282/307 (91%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 327
MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG
Sbjct: 1 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEG 60
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 507
LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT
Sbjct: 61 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTT 120
Query: 508 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 687
PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA
Sbjct: 121 PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPA 180
Query: 688 IQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPE 867
IQFMFYEG DVF TTVTYPMQTVQSILRFGRHRLNPE
Sbjct: 181 IQFMFYEGLKRQLLKKRMKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILRFGRHRLNPE 240
Query: 868 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 1047
NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG
Sbjct: 241 NRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMG 300
Query: 1048 LKRASKH 1068
LKRASKH
Sbjct: 301 LKRASKH 307
>ref|XP_003126053.1| PREDICTED: peroxisomal membrane protein PMP34-like isoform 2 [Sus
scrofa].
Length = 234
Score = 332 bits (850), Expect = 3e-91
Identities = 171/196 (87%), Positives = 171/196 (87%)
Frame = +1
Query: 481 GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFP 660
GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFP
Sbjct: 39 GVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFP 98
Query: 661 SLLLVFNPAIQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILR 840
SLLLVFNPAIQFMFYEG DVF TTVTYPMQTVQSILR
Sbjct: 99 SLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILR 158
Query: 841 FGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 1020
FGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL
Sbjct: 159 FGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 218
Query: 1021 TATTFMVMGLKRASKH 1068
TATTFMVMGLKRASKH
Sbjct: 219 TATTFMVMGLKRASKH 234
Score = 102 bits (254), Expect = 4e-22
Identities = 77/217 (35%), Positives = 112/217 (51%), Gaps = 30/217 (13%)
Frame = +1
Query: 148 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQ-------------VDEKRKSK- 285
MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQ V+ + K +
Sbjct: 1 MASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQGVVNVLLTTPLWVVNTRLKLQG 60
Query: 286 ----------TTHMVLL----EIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTV 423
T + ++ +II++EG+ A + G FP + L + + F + LK
Sbjct: 61 AKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSL-LLVFNPAIQFMFYEGLKRQ 119
Query: 424 WVKGQHSTTGKDL-IVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIID 600
+K + + D+ I+G +A + +T P+ V + L+ + E+ + ++
Sbjct: 120 LLKKRMKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLY 179
Query: 601 AFHQIIRDEGISALWNGTFPSLL-LVFNPAIQFMFYE 708
HQ +R GI L+ G LL V A+ F+ YE
Sbjct: 180 LLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYE 216
>ref|XP_003355049.1| PREDICTED: mitochondrial folate transporter/carrier [Sus scrofa].
Length = 315
Score = 101 bits (251), Expect = 1e-21
Identities = 92/331 (27%), Positives = 144/331 (43%), Gaps = 14/331 (4%)
Frame = +1
Query: 115 RTVTRSAGTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDE----KRKS 282
+T + S+ + + + YENLV V+G V S A+ PLD ++R V + + K
Sbjct: 6 QTASASSAWSSIFRHVRYENLVAGVSGGVLSNLAL---HPLDLVKIRFAVSDGLELRPKY 62
Query: 283 KTTHMVLLEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG--QHSTTGK 456
K L I K +GL Y+G P + S +YF+ +N++K+ +G + +
Sbjct: 63 KGILHCLTTIWKLDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAERLEAAE 122
Query: 457 DLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTN---YSGIIDAFHQIIRDE 627
LI AG + + +T PLWV TRL LQ E +V + Y G+ DA +I + E
Sbjct: 123 YLISAAEAGAMTLCITNPLWVTKTRLMLQ-----YEGVVTASQRQYKGMFDALVKIYKYE 177
Query: 628 GISALWNGTFPSLLLVFNPAIQFMFYE-----GXXXXXXXXXXXXXXXDVFXXXXXXXXX 792
G+ L+ G P L + A+QFM YE +
Sbjct: 178 GVRGLYKGFIPGLFGTSHGALQFMTYELLKLKYNQHINRLPEAQLNTVEYISVAALSKIF 237
Query: 793 XTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLL 972
TYP Q V R RL ++ VL ++ + R+ GI G YKG+ L+
Sbjct: 238 AVAATYPYQVV-------RARLQDQHMFYS---GVLDVITKTWRKEGISGFYKGIAPNLI 287
Query: 973 QTVLTAALMFLVYEKLTATTFMVMGLKRASK 1065
+ + F+VYE + + ++GLK K
Sbjct: 288 RVTPACCITFVVYENV---SHFLLGLKEKKK 315
>ref|NP_001157986.1| mitochondrial thiamine pyrophosphate carrier [Sus scrofa].
Length = 318
Score = 84.3 bits (207), Expect = 1e-16
Identities = 87/313 (27%), Positives = 126/313 (40%), Gaps = 20/313 (6%)
Frame = +1
Query: 136 GTAPMASVLSYENLVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-----HMV 300
G P A + NL AVAG+V + + PLD ++R Q+ +R S++ H +
Sbjct: 3 GYDPRADGRNISNLEVAVAGSVSGLVTRAMISPLDVIKIRFQLQIERLSRSDPNAKYHGI 62
Query: 301 L---LEIIKEEGLLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVG 471
L +I++EEG A ++G P V F +F L T V +D V
Sbjct: 63 LQAGRQILQEEGPTAFWKGHIPAQLLSIGYGAVQFLSFEVL-TELVHRASVRDARDFSVH 121
Query: 472 FVAGVVNVLLTT----PLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISA 639
FV G ++ + T PL V+ TR QG P Y + DA + R EG +
Sbjct: 122 FVCGGLSACVATLTMHPLDVLRTRYAAQGE--------PRVYRALRDAVVTMYRTEGPAV 173
Query: 640 LWNGTFPSLLLVFNPA-IQFMFYEGXXXXXXXXXXXXXXXD----VFXXXXXXXXXXTTV 804
+ G P+LL +F A QF FY D T+
Sbjct: 174 FYKGLTPTLLAIFPYAGFQFAFYSSLKHVGEWAMPSEDKTDGNFKNLLCGSGAGVISKTL 233
Query: 805 TYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLL---HQRVRRFGIMGLYKGLEAKLLQ 975
TYP+ + L+ G + G +R+ LL Q +R G G +KGL LL+
Sbjct: 234 TYPLDLFKKRLQVG--GFEQARASFGQVRSYKGLLDCARQVLREEGAQGFFKGLSPSLLK 291
Query: 976 TVLTAALMFLVYE 1014
L+ MF YE
Sbjct: 292 AALSTGFMFFWYE 304
>ref|NP_999214.1| mitochondrial uncoupling protein 3 [Sus scrofa].
Length = 308
Score = 67.8 bits (164), Expect = 1e-11
Identities = 67/287 (23%), Positives = 114/287 (39%), Gaps = 10/287 (3%)
Frame = +1
Query: 229 FPLDTARLRLQVDEKRKSKTTHM------VLLEIIKEEGLLAPYRGWFPVISSLCCSNFV 390
FPLDTA++RLQ+ + ++ + +L +++ EG +PY G + +
Sbjct: 32 FPLDTAKVRLQIQGENQAARSAQYRGVLGTILTMVRNEGPRSPYNGLVAGLQRQMSFASI 91
Query: 391 YFYTFNSLKTVWV-KGQ-HSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNE 564
++S+K ++ KG HS+ ++ G G + V P VV R + A
Sbjct: 92 RIGLYDSVKQLYTPKGSDHSSITTRILAGCTTGAMAVTCAQPTDVVKVRFQ---ASIHAG 148
Query: 565 DIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYEGXXXXXXXXX 738
YSG +DA+ I R+EG+ LW G P++ + N A +
Sbjct: 149 PRSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITRNAIVNCAEMVTYDVIKEKVLDYHL 208
Query: 739 XXXXXXDVFXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQR 918
F T V P+ V++ R+ +P G +N L + +
Sbjct: 209 LTDNLPCHFVSAFGAGFCATVVASPVDVVKT-----RYMNSPP----GQYQNPLDCMLKM 259
Query: 919 VRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLKRA 1059
V + G YKG L+ +MF+ YE+L V L+ +
Sbjct: 260 VTQEGPTAFYKGFTPSFLRLGSWNVVMFVSYEQLKRALMKVQMLRES 306
>ref|NP_999454.1| mitochondrial uncoupling protein 2 [Sus scrofa].
Length = 309
Score = 65.1 bits (157), Expect = 8e-11
Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Frame = +1
Query: 178 VHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMV----------LLEIIKEEG 327
V + + A + FPLDTA++RLQ+ +R+ +L +++ EG
Sbjct: 15 VKFLGAGTAACIADLITFPLDTAKVRLQIQGERRGPVQAAASAQYRGVLGTILTMVRNEG 74
Query: 328 LLAPYRGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLT 504
+ Y G + V ++S+K + KG +H+ G L+ G G + V +
Sbjct: 75 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKHFYTKGSEHAGIGSRLLAGSTTGALAVAVA 134
Query: 505 TPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSL 666
P VV R + Q Y +DA+ I R+EG+ LW GT P++
Sbjct: 135 QPTDVVKVRFQAQARAGGGR-----RYRSTVDAYKTIAREEGLRGLWKGTSPNV 183
>ref|XP_003360489.1| PREDICTED: brain mitochondrial carrier protein 1-like isoform 2
[Sus scrofa].
Length = 325
Score = 65.1 bits (157), Expect = 8e-11
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTHMVLLEIIKEEGLLAPY 342
V G + S+ A FP+D + RLQV ++ K + L I KEEG+LA Y
Sbjct: 45 VYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVLALY 104
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + + SLK ++V+ + T ++I G V+GV++ + P V
Sbjct: 105 SGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDV 164
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPS 663
+ R++ QG+ F+ +I +F I + EG LW G P+
Sbjct: 165 LKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRGVVPT 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCC----SNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVV 522
P VY T L V G T + F G+ L + P+ VV
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLILSGVLGDTILT--HFVSSFTCGLAGALASNPVDVV 259
Query: 523 NTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
TR+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 260 RTRMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 304
>ref|XP_003135426.2| PREDICTED: brain mitochondrial carrier protein 1-like isoform 1
[Sus scrofa].
Length = 325
Score = 65.1 bits (157), Expect = 8e-11
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVD--------EKRKSKTTHMVLLEIIKEEGLLAPY 342
V G + S+ A FP+D + RLQV ++ K + L I KEEG+LA Y
Sbjct: 45 VYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGVLALY 104
Query: 343 RGWFPVISSLCCSNFVYFYTFNSLKTVWVKG-QHSTTGKDLIVGFVAGVVNVLLTTPLWV 519
G P + + + SLK ++V+ + T ++I G V+GV++ + P V
Sbjct: 105 SGIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDV 164
Query: 520 VNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPS 663
+ R++ QG+ F+ +I +F I + EG LW G P+
Sbjct: 165 LKIRMQAQGSLFQ---------GSMIGSFIDIYQQEGTRGLWRGVVPT 203
Score = 50.1 bits (118), Expect = 3e-06
Identities = 42/169 (24%), Positives = 71/169 (42%), Gaps = 4/169 (2%)
Frame = +1
Query: 175 LVHAVAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHMVLLEIIKEEGLLAPYRGWF 354
L++ + G V + + T+ P D ++R+Q + ++I ++EG +RG
Sbjct: 142 LINMICGVVSGVISSTIANPTDVLKIRMQAQGSLFQGSMIGSFIDIYQQEGTRGLWRGVV 201
Query: 355 PVISSLCC----SNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVV 522
P VY T L V G T + F G+ L + P+ VV
Sbjct: 202 PTAQRAAIVVGVELPVYDITKKHLILSGVLGDTILT--HFVSSFTCGLAGALASNPVDVV 259
Query: 523 NTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL 669
TR+ Q A + D+ Y G +D ++ + EG AL+ G +P+ L
Sbjct: 260 RTRMMNQRAIVGHVDL----YKGTLDGILKMWKHEGFFALYKGFWPNWL 304
>ref|NP_001186292.1| calcium-binding mitochondrial carrier protein SCaMC-1-like [Sus
scrofa].
Length = 477
Score = 64.7 bits (156), Expect = 1e-10
Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 8/289 (2%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTT-HMVLLEIIKEEGLLAPYRGWFPVI 363
+AG V + T PLD ++ +QV + K + +++KE G+ + +RG +
Sbjct: 199 LAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSEKMNIYGGFRQMVKEGGIRSLWRGNGTNV 258
Query: 364 SSLCCSNFVYFYTFNSLKTVWVK-GQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRLKL 540
+ V F+ + K + + GQ T + I G +AG P+ V+ TRL +
Sbjct: 259 IKIAPETAVKFWAYEQYKKLLTEEGQKVGTFERFISGSMAGATAQTFIYPMEVLKTRLAV 318
Query: 541 QGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL-LVFNPAIQFMFYEGXX 717
YSGI D +I++ EG+ A + G P+LL ++ I YE
Sbjct: 319 GKT---------GQYSGIFDCAKKILKHEGMGAFYKGYVPNLLGIIPYAGIDLAVYELLK 369
Query: 718 XXXXXXXXXXXXXDVFXXXXXXXXXXTT----VTYPMQTVQSILRFGRHRLNPENRTLGS 885
+T +YP+ V R R+ + G+
Sbjct: 370 SHWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYPLALV-------RTRMQAQAMVEGA 422
Query: 886 LR-NVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTAT 1029
+ N++ L + + + GI GLY+G+ ++ + + ++VYE + T
Sbjct: 423 PQLNMVGLFRRIISKEGIPGLYRGITPNFMKVLPAVGISYVVYENMKQT 471
Score = 50.8 bits (120), Expect = 2e-06
Identities = 44/190 (23%), Positives = 77/190 (40%), Gaps = 1/190 (0%)
Frame = +1
Query: 454 KDLIVGFVAGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGI 633
+ L+ G VAG V+ T PL + +++ G+K +I Y G F Q++++ GI
Sbjct: 196 RQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGSKSEKMNI----YGG----FRQMVKEGGI 247
Query: 634 SALWNGTFPSLLLVF-NPAIQFMFYEGXXXXXXXXXXXXXXXDVFXXXXXXXXXXTTVTY 810
+LW G +++ + A++F YE + F T Y
Sbjct: 248 RSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKVGTFERFISGSMAGATAQTFIY 307
Query: 811 PMQTVQSILRFGRHRLNPENRTLGSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTA 990
PM+ +++ L G+ G + + ++ G+ YKG LL + A
Sbjct: 308 PMEVLKTRLAVGK---------TGQYSGIFDCAKKILKHEGMGAFYKGYVPNLLGIIPYA 358
Query: 991 ALMFLVYEKL 1020
+ VYE L
Sbjct: 359 GIDLAVYELL 368
>ref|XP_003358423.1| PREDICTED: solute carrier family 25 member 38-like isoform 1 [Sus
scrofa].
Length = 304
Score = 64.3 bits (155), Expect = 1e-10
Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 9/298 (3%)
Frame = +1
Query: 187 VAGAVGSMTAMTVFFPLDTARLRLQVDEKRKSKTTHM----VLLEIIKEEGLLAPYRGWF 354
+ G++ + +F PLD + RLQ + + + +LL +++ E LL ++G
Sbjct: 32 LCGSISGTFSALLFQPLDLLKTRLQTVQPSAHGSRRIGMLALLLNVVRTESLLGLWKGMS 91
Query: 355 PVISSLCCSNFVYFYTFNSLKTVWVKGQHSTTGKDLIVGFVAGVVNVLLTTPLWVVNTRL 534
P I +YF + SLK +++G T + +I+G + + + +P+ V+ TR
Sbjct: 92 PSIVRCVPGVGIYFGSLYSLKQYFLRGHPPTALESVILGVGSRSIAGVCMSPITVIKTR- 150
Query: 535 KLQGAKFRNEDIVPTNYSGIIDAFHQIIRDEGISALWNGTFPSLL--LVFNPAIQFMFYE 708
+ ++ Y I A I EG L++G +LL F+ I MFY
Sbjct: 151 -YESGRY--------GYESIYSALRSIYHSEGYRGLFSGLTATLLRDAPFS-GIYLMFYN 200
Query: 709 GXXXXXXXXXXXXXXXDV--FXXXXXXXXXXTTVTYPMQTVQSILRFGRHRLNP-ENRTL 879
V F + VT P +++ + +L+P + R +
Sbjct: 201 QTKNIVLHDQLDAVLVPVANFSCGIFAGILASLVTQPADVIKTHM-----QLSPVKFRWI 255
Query: 880 GSLRNVLYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKLTATTFMVMGLK 1053
G +++ + +G+ G ++G + L+ L AA+ + VYE++ A MGLK
Sbjct: 256 GQAVTLIF------KDYGLRGFFQGSVPRTLRRTLVAAMAWTVYEEMMAK----MGLK 303
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,515,662
Number of extensions: 706489
Number of successful extensions: 2669
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 51
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002713
(1237 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 618 e-174
>Sscrofa_Chr05
|| Length = 111506441
Score = 618 bits (312), Expect = e-174
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 922 aggcgttttggaataatgggactctacaaaggccttgaagccaaactgctacagacagtc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849402 aggcgttttggaataatgggactctacaaaggccttgaagccaaactgctacagacagtc 4849461
Query: 982 ctcactgctgctctcatgttcctcgtttatgagaaactgacggctaccaccttcatggtc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849462 ctcactgctgctctcatgttcctcgtttatgagaaactgacggctaccaccttcatggtc 4849521
Query: 1042 atggggctgaagagggcgagcaagcactgagaaatgccttccaccgcccagctcggagat 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849522 atggggctgaagagggcgagcaagcactgagaaatgccttccaccgcccagctcggagat 4849581
Query: 1102 gctcaggatggggggtcccttctgtgtgaagagaagcgattctcctcttactccctcctc 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849582 gctcaggatggggggtcccttctgtgtgaagagaagcgattctcctcttactccctcctc 4849641
Query: 1162 cccctgagaacttcaccctcattggcttgaagtgtgtctaaagttaaacagggagtatag 1221
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4849642 cccctgagaacttcaccctcattggcttgaagtgtgtctaaggttaaacagggagtatag 4849701
Query: 1222 ccagcgtgagctatta 1237
||||||||||||||||
Sbjct: 4849702 ccagcgtgagctatta 4849717
Score = 400 bits (202), Expect = e-109
Identities = 202/202 (100%)
Strand = Plus / Plus
Query: 1 gacccggaaggagttgttttggaggaggcgggcttgagagggtggagtttctgacgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4802927 gacccggaaggagttgttttggaggaggcgggcttgagagggtggagtttctgacgctac 4802986
Query: 61 ctctcggggctccagtgcttctttcctctctcgactggctgtggctcctgctggagaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4802987 ctctcggggctccagtgcttctttcctctctcgactggctgtggctcctgctggagaact 4803046
Query: 121 gtgaccaggtctgcgggaaccgcacctatggcttccgtgctgtcctacgaaaacctggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4803047 gtgaccaggtctgcgggaaccgcacctatggcttccgtgctgtcctacgaaaacctggtc 4803106
Query: 181 cacgccgtggcaggagccgtgg 202
||||||||||||||||||||||
Sbjct: 4803107 cacgccgtggcaggagccgtgg 4803128
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 330 cctggcaccatatcgagggtggtttccagtgatctccagcctctgctgctccaattttgt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4829441 cctggcaccatatcgagggtggtttccagtgatctccagcctctgctgctccaattttgt 4829500
Query: 390 ctatttctacacttttaatagcctcaaaacagtctgggtcaaaggtcaacattctactac 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4829501 ctatttctacacttttaatagcctcaaaacagtctgggtcaaaggtcaacattctactac 4829560
Query: 450 tggaaaagatctgatagttggctttgttgcagg 482
|||||||||||||||||||||||||||||||||
Sbjct: 4829561 tggaaaagatctgatagttggctttgttgcagg 4829593
Score = 291 bits (147), Expect = 5e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 598 gatgcttttcaccagatcattcgtgatgaagggatctcggctttatggaacggcacgttt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840163 gatgcttttcaccagatcattcgtgatgaagggatctcggctttatggaacggcacgttt 4840222
Query: 658 ccctcgttgctgttggtcttcaatcctgccatccaattcatgttctatgaaggtttaaaa 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840223 ccctcgttgctgttggtcttcaatcctgccatccaattcatgttctatgaaggtttaaaa 4840282
Query: 718 cggcagcttttaaagaaacgaatgaag 744
|||||||||||||||||||||||||||
Sbjct: 4840283 cggcagcttttaaagaaacgaatgaag 4840309
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 476 ttgcaggcgtggtgaacgtgctgctaacaaccccactttgggtggtaaacaccagactga 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838558 ttgcaggcgtggtgaacgtgctgctaacaaccccactttgggtggtaaacaccagactga 4838617
Query: 536 agctgcaaggggccaaatttaggaatgaagacattgtgccgaccaactacagtggtatca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4838618 agctgcaaggggccaaatttaggaatgaagacattgtgccgaccaactacagtggtatca 4838677
Query: 596 ttg 598
|||
Sbjct: 4838678 ttg 4838680
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 743 agctttcctctttggatgtgttcatcattggtgcgatagccaaagccattgccaccacgg 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840395 agctttcctctttggatgtgttcatcattggtgcgatagccaaagccattgccaccacgg 4840454
Query: 803 tcacctatcccatgcagacagtacagtcaattctgagg 840
||||||||||||||||||||||||||||||||||||||
Sbjct: 4840455 tcacctatcccatgcagacagtacagtcaattctgagg 4840492
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 840 gtttggacgtcacagactaaacccagaaaacagaacactggggagtcttcggaacgttct 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843155 gtttggacgtcacagactaaacccagaaaacagaacactggggagtcttcggaacgttct 4843214
Query: 900 ctatcttctgcaccaacgagtgagg 924
|||||||||||||||||||||||||
Sbjct: 4843215 ctatcttctgcaccaacgagtgagg 4843239
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 261 agttgatgagaaaagaaagtccaaaacgacacacatggtgctcctggagatcattaaaga 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4827603 agttgatgagaaaagaaagtccaaaacgacacacatggtgctcctggagatcattaaaga 4827662
Query: 321 agaaggcct 329
|||||||||
Sbjct: 4827663 agaaggcct 4827671
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 201 gggaagcatgacggcaatgacggtattttttcccttggacacggctcgacttcgacttca 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4824061 gggaagcatgacggcaatgacggtattttttcccttggacacggctcgacttcgacttca 4824120
Query: 261 ag 262
||
Sbjct: 4824121 ag 4824122
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,809,163
Number of extensions: 213
Number of successful extensions: 213
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 9
Length of query: 1237
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1216
Effective length of database: 2,808,413,156
Effective search space: 3415030397696
Effective search space used: 3415030397696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)