Animal-Genome cDNA 20110601C-002715


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777003.2| platelet-activating factor acetylhydrolase [Bos...   538   e-153
Alignment   gi|NP_776995.1| platelet-activating factor acetylhydrolase 2, c...   235   5e-62

>ref|NP_777003.2| platelet-activating factor acetylhydrolase [Bos taurus].
          Length = 444

 Score =  538 bits (1387), Expect = e-153
 Identities = 259/296 (87%), Positives = 279/296 (94%)
 Frame = +1

Query: 181  WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 360
            WVSKIQALMAAA  GQ+KIPRGNGSYSVGCTDLMFDYT KGTFLRLYYPSQD D SDTLW
Sbjct: 38   WVSKIQALMAAANIGQSKIPRGNGSYSVGCTDLMFDYTNKGTFLRLYYPSQDDDHSDTLW 97

Query: 361  IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 540
            IP+KEYF GLSKFLGTHWL+GKI+ LFFGSMTTPAAWN+ LRTGEKYPLIIFSHGLGAFR
Sbjct: 98   IPNKEYFLGLSKFLGTHWLVGKIMGLFFGSMTTPAAWNAHLRTGEKYPLIIFSHGLGAFR 157

Query: 541  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 720
            TIYSAIG DLAS+GFIVAAVEHRDGSAS+TY+FKDQSA EI NK+WLYLRTL +GEEEFP
Sbjct: 158  TIYSAIGIDLASHGFIVAAVEHRDGSASSTYYFKDQSAVEIGNKSWLYLRTLKRGEEEFP 217

Query: 721  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 900
            LRNEQ+RQRA+ECSQALS+ILD+D G+ V NVLDLEFDVEQLKDSIDRDKIA++GHSFGG
Sbjct: 218  LRNEQLRQRAKECSQALSLILDIDHGRPVMNVLDLEFDVEQLKDSIDRDKIAIIGHSFGG 277

Query: 901  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMK 1068
            ATV+QTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFF +SE FQYPSNI+RMK
Sbjct: 278  ATVIQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFINSERFQYPSNIIRMK 333


>ref|NP_776995.1| platelet-activating factor acetylhydrolase 2, cytoplasmic [Bos
            taurus].
          Length = 392

 Score =  235 bits (600), Expect = 5e-62
 Identities = 126/286 (44%), Positives = 179/286 (62%), Gaps = 9/286 (3%)
 Frame = +1

Query: 238  PRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDT--LWIPDKEYFWGLSKFLGTH 411
            P   G + VGC D+M   + +G+F RL+YP Q+ + +    LWIP  EY  GL+++L  +
Sbjct: 10   PPVTGPHLVGCGDVMEGQSLQGSFFRLFYPCQEAEETSEQPLWIPRYEYCAGLAEYLKFN 69

Query: 412  WLLGKIL-SLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIGTDLASYGF 585
               G +L +L  GS   P +WN P +T +  YPLIIFSHG+GAFRT+YSA   +LAS GF
Sbjct: 70   KRWGGLLFNLGVGSCRLPVSWNGPFKTKDSGYPLIIFSHGMGAFRTVYSAFCMELASRGF 129

Query: 586  IVAAVEHRDGSASATYFFK-----DQSAAEIRNKTWLYLRTLGKGEEEFPLRNEQVRQRA 750
            +VA  EHRDGSA+AT F K     +Q   E   + W+  R + +GE+EF +RN QV QR 
Sbjct: 130  VVAVPEHRDGSAAATCFCKQTPEENQPDNEALKEEWIPHRQIEEGEKEFYVRNYQVHQRV 189

Query: 751  EECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATVLQTLSED 930
             EC + L ++ ++  G++V N+L    D+  LK  ID  ++AVMGHSFGGAT +  L+++
Sbjct: 190  SECVRVLKILQEVTAGQAVLNILPGGLDLMTLKGGIDVSRVAVMGHSFGGATAILALAKE 249

Query: 931  QRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMK 1068
             +FRC +ALDAWMFP+  + Y     P+FF ++E FQ    +  MK
Sbjct: 250  MQFRCAVALDAWMFPLEHDFYPTARGPIFFINAEKFQTVETVNLMK 295


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,142,541
Number of extensions: 1189078
Number of successful extensions: 3883
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3880
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001003198.1| platelet-activating factor acetylhydrolase [...   498   e-141
Alignment   gi|XP_535348.2| PREDICTED: similar to platelet-activating facto...   233   3e-61

>ref|NP_001003198.1| platelet-activating factor acetylhydrolase [Canis lupus familiaris].
          Length = 444

 Score =  498 bits (1283), Expect = e-141
 Identities = 239/312 (76%), Positives = 275/312 (88%)
 Frame = +1

Query: 181  WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 360
            W +KIQALMAAA   Q++IP+GNGSYSVGCTDLMFDYT KGTFLRLYYPSQ+ D SDTLW
Sbjct: 38   WANKIQALMAAASIRQSRIPKGNGSYSVGCTDLMFDYTNKGTFLRLYYPSQEDDHSDTLW 97

Query: 361  IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 540
            IP+KEYF+GLSK+LGT WL+GKILS FFGS+TTPA WNSPLRTGEKYPLI+FSHGLGAFR
Sbjct: 98   IPNKEYFFGLSKYLGTPWLMGKILSFFFGSVTTPANWNSPLRTGEKYPLIVFSHGLGAFR 157

Query: 541  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 720
            TIYSAIG DLAS+GFIVAA+EHRDGSASATY+FKDQSAAEI NK+W YL+ L  G+EE  
Sbjct: 158  TIYSAIGIDLASHGFIVAAIEHRDGSASATYYFKDQSAAEIGNKSWSYLQELKPGDEEIH 217

Query: 721  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 900
            +RNEQV++RA+ECSQAL++ILD+D G+ +KNVLDLEFDVEQLKDSIDRDKIAV+GHSFGG
Sbjct: 218  VRNEQVQKRAKECSQALNLILDIDHGRPIKNVLDLEFDVEQLKDSIDRDKIAVIGHSFGG 277

Query: 901  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATH 1080
            ATVLQ LSEDQRFRCGIALDAWM P+ D +YSRIPQPLFF +SE FQ+P NI +MK   +
Sbjct: 278  ATVLQALSEDQRFRCGIALDAWMLPLDDAIYSRIPQPLFFINSERFQFPENIKKMKKC-Y 336

Query: 1081 RGEKENDYIRVQ 1116
              +KE   I ++
Sbjct: 337  SPDKERKMITIR 348


>ref|XP_535348.2| PREDICTED: similar to platelet-activating factor acetylhydrolase 2
            [Canis familiaris].
          Length = 392

 Score =  233 bits (594), Expect = 3e-61
 Identities = 126/294 (42%), Positives = 181/294 (61%), Gaps = 9/294 (3%)
 Frame = +1

Query: 238  PRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPS--DTLWIPDKEYFWGLSKFLGTH 411
            P   G + VGC D+M     +G+F RL+YP Q+ + +    LWIP  EY  GL+ +L  +
Sbjct: 10   PPVTGPHHVGCGDVMEGQGLEGSFFRLFYPCQESEETTEQPLWIPRYEYCTGLANYLRFN 69

Query: 412  WLLGKIL-SLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIGTDLASYGF 585
               G +L SL  GS   P +WN P +  +  YPLIIFSHG+GAFRT+YSA   +LAS+GF
Sbjct: 70   KRWGGLLFSLAMGSCRLPVSWNGPFKAKDSGYPLIIFSHGMGAFRTLYSAFCMELASHGF 129

Query: 586  IVAAVEHRDGSASATYFFKD-----QSAAEIRNKTWLYLRTLGKGEEEFPLRNEQVRQRA 750
            +VA  EHRDGSA+ T F K      Q+  E   + W+  R + +GE+EF +RN QV QR 
Sbjct: 130  VVAVPEHRDGSAATTCFCKQAPEESQATNESLEEEWIPHRQIEEGEKEFHVRNCQVYQRV 189

Query: 751  EECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATVLQTLSED 930
             EC++ L ++ ++  G+ V N+L    D+  LK +I+   +AVMGHSFGGAT L  L+++
Sbjct: 190  SECTRVLRILQEVTAGQIVLNILPDGLDLTTLKGNINMSCVAVMGHSFGGATALLALAKE 249

Query: 931  QRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATHRGEK 1092
             +FRC +ALDAWMFP+  + Y +   P+FF ++E FQ   ++  MK    + E+
Sbjct: 250  TQFRCAVALDAWMFPLEHDFYPKARGPVFFINAEKFQTVESVNLMKKICAQHEQ 303


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,084,771
Number of extensions: 1227401
Number of successful extensions: 3904
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3898
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001161829.1| platelet-activating factor acetylhydrolase p...   516   e-146
Alignment   gi|NP_005075.3| platelet-activating factor acetylhydrolase prec...   516   e-146
Alignment   gi|NP_000428.2| platelet-activating factor acetylhydrolase 2, c...   238   1e-62

>ref|NP_001161829.1| platelet-activating factor acetylhydrolase precursor [Homo sapiens].
          Length = 441

 Score =  516 bits (1330), Expect = e-146
 Identities = 250/312 (80%), Positives = 280/312 (89%)
 Frame = +1

Query: 181  WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 360
            WV+KIQ LMAAA FGQTKIPRGNG YSVGCTDLMFD+T KGTFLRLYYPSQD D  DTLW
Sbjct: 38   WVNKIQVLMAAASFGQTKIPRGNGPYSVGCTDLMFDHTNKGTFLRLYYPSQDNDRLDTLW 97

Query: 361  IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 540
            IP+KEYFWGLSKFLGTHWL+G IL L FGSMTTPA WNSPLR GEKYPL++FSHGLGAFR
Sbjct: 98   IPNKEYFWGLSKFLGTHWLMGNILRLLFGSMTTPANWNSPLRPGEKYPLVVFSHGLGAFR 157

Query: 541  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 720
            T+YSAIG DLAS+GFIVAAVEHRD SASATY+FKDQSAAEI +K+WLYLRTL K EEE  
Sbjct: 158  TLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTL-KQEEETH 216

Query: 721  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 900
            +RNEQVRQRA+ECSQALS+ILD+D GK VKN LDL+FD+EQLKDSIDR+KIAV+GHSFGG
Sbjct: 217  IRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGG 276

Query: 901  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATH 1080
            ATV+QTLSEDQRFRCGIALDAWMFP+GDEVYSRIPQPLFF +SE+FQYP+NI++MK   +
Sbjct: 277  ATVIQTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPLFFINSEYFQYPANIIKMKKC-Y 335

Query: 1081 RGEKENDYIRVQ 1116
              +KE   I ++
Sbjct: 336  SPDKERKMITIR 347


>ref|NP_005075.3| platelet-activating factor acetylhydrolase precursor [Homo sapiens].
          Length = 441

 Score =  516 bits (1330), Expect = e-146
 Identities = 250/312 (80%), Positives = 280/312 (89%)
 Frame = +1

Query: 181  WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 360
            WV+KIQ LMAAA FGQTKIPRGNG YSVGCTDLMFD+T KGTFLRLYYPSQD D  DTLW
Sbjct: 38   WVNKIQVLMAAASFGQTKIPRGNGPYSVGCTDLMFDHTNKGTFLRLYYPSQDNDRLDTLW 97

Query: 361  IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 540
            IP+KEYFWGLSKFLGTHWL+G IL L FGSMTTPA WNSPLR GEKYPL++FSHGLGAFR
Sbjct: 98   IPNKEYFWGLSKFLGTHWLMGNILRLLFGSMTTPANWNSPLRPGEKYPLVVFSHGLGAFR 157

Query: 541  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 720
            T+YSAIG DLAS+GFIVAAVEHRD SASATY+FKDQSAAEI +K+WLYLRTL K EEE  
Sbjct: 158  TLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTL-KQEEETH 216

Query: 721  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 900
            +RNEQVRQRA+ECSQALS+ILD+D GK VKN LDL+FD+EQLKDSIDR+KIAV+GHSFGG
Sbjct: 217  IRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGG 276

Query: 901  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATH 1080
            ATV+QTLSEDQRFRCGIALDAWMFP+GDEVYSRIPQPLFF +SE+FQYP+NI++MK   +
Sbjct: 277  ATVIQTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPLFFINSEYFQYPANIIKMKKC-Y 335

Query: 1081 RGEKENDYIRVQ 1116
              +KE   I ++
Sbjct: 336  SPDKERKMITIR 347


>ref|NP_000428.2| platelet-activating factor acetylhydrolase 2, cytoplasmic [Homo
            sapiens].
          Length = 392

 Score =  238 bits (606), Expect = 1e-62
 Identities = 127/294 (43%), Positives = 182/294 (61%), Gaps = 9/294 (3%)
 Frame = +1

Query: 238  PRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPS--DTLWIPDKEYFWGLSKFLGTH 411
            P   G + VGC D+M     +G+F RL+YP Q  + +    LWIP  EY  GL+++L  +
Sbjct: 10   PPVTGPHLVGCGDVMEGQNLQGSFFRLFYPCQKAEETMEQPLWIPRYEYCTGLAEYLQFN 69

Query: 412  WLLGKIL-SLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIGTDLASYGF 585
               G +L +L  GS   P +WN P +T +  YPLIIFSHGLGAFRT+YSA   +LAS GF
Sbjct: 70   KRCGGLLFNLAVGSCRLPVSWNGPFKTKDSGYPLIIFSHGLGAFRTLYSAFCMELASRGF 129

Query: 586  IVAAVEHRDGSASATYFFK-----DQSAAEIRNKTWLYLRTLGKGEEEFPLRNEQVRQRA 750
            +VA  EHRD SA+ TYF K     +Q   E   + W+  R + +GE+EF +RN QV QR 
Sbjct: 130  VVAVPEHRDRSAATTYFCKQAPEENQPTNESLQEEWIPFRRVEEGEKEFHVRNPQVHQRV 189

Query: 751  EECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATVLQTLSED 930
             EC + L ++ ++  G++V N+L    D+  LK +ID  ++AVMGHSFGGAT +  L+++
Sbjct: 190  SECLRVLKILQEVTAGQTVFNILPGGLDLMTLKGNIDMSRVAVMGHSFGGATAILALAKE 249

Query: 931  QRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATHRGEK 1092
             +FRC +ALDAWMFP+  + Y +   P+FF ++E FQ   ++  MK    + E+
Sbjct: 250  TQFRCAVALDAWMFPLERDFYPKARGPVFFINTEKFQTMESVNLMKKICAQHEQ 303


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,306,581
Number of extensions: 1213448
Number of successful extensions: 4149
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4140
Number of HSP's successfully gapped: 3
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_038765.2| platelet-activating factor acetylhydrolase [Mus...   403   e-112
Alignment   gi|NP_598641.2| platelet-activating factor acetylhydrolase 2, c...   246   3e-65

>ref|NP_038765.2| platelet-activating factor acetylhydrolase [Mus musculus].
          Length = 440

 Score =  403 bits (1035), Expect = e-112
 Identities = 200/309 (64%), Positives = 245/309 (79%)
 Frame = +1

Query: 190  KIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLWIPD 369
            K+Q++M+AAG G +KIP+GNGSY VGCTDLMF Y  +  F+RLYYP+QD    DT+WIP+
Sbjct: 40   KLQSVMSAAGSGHSKIPKGNGSYPVGCTDLMFGYGNESVFVRLYYPAQDQGRLDTVWIPN 99

Query: 370  KEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFRTIY 549
            KEYF GLS FLGT  ++G IL L +GS+TTPA+WNSPLRTGEKYPLI+FSHGLGAFRTIY
Sbjct: 100  KEYFLGLSIFLGTPSIVGNILHLLYGSLTTPASWNSPLRTGEKYPLIVFSHGLGAFRTIY 159

Query: 550  SAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFPLRN 729
            SAIG  LAS GFIVA VEHRD SASATYFF+DQ AA++ N++WLYLR + K EE   +R 
Sbjct: 160  SAIGIGLASNGFIVATVEHRDRSASATYFFEDQVAAKVENRSWLYLRKV-KQEESESVRK 218

Query: 730  EQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATV 909
            EQV+QRA ECS+ALS ILD++ G   +NVL   FD++QLKD+ID  KIA+MGHSFGGATV
Sbjct: 219  EQVQQRAIECSRALSAILDIEHGDPKENVLGSAFDMKQLKDAIDETKIALMGHSFGGATV 278

Query: 910  LQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATHRGE 1089
            LQ LSEDQRFRCG+ALD WM+PV +E+YSR  QPL F +S  FQ P +I +MK   ++ +
Sbjct: 279  LQALSEDQRFRCGVALDPWMYPVNEELYSRTLQPLLFINSAKFQTPKDIAKMKK-FYQPD 337

Query: 1090 KENDYIRVQ 1116
            KE   I ++
Sbjct: 338  KERKMITIK 346


>ref|NP_598641.2| platelet-activating factor acetylhydrolase 2, cytoplasmic [Mus
            musculus].
          Length = 390

 Score =  246 bits (627), Expect = 3e-65
 Identities = 135/301 (44%), Positives = 187/301 (62%), Gaps = 9/301 (2%)
 Frame = +1

Query: 217  GFGQTK-IPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDT-LWIPDKEYFWGL 390
            G GQ+   P  +G + +GCTD+M  ++ +G+  RL+YP Q  +  +  LWIP  EY  GL
Sbjct: 2    GAGQSVCFPPISGPHHIGCTDVMEGHSLEGSLFRLFYPCQASEKCEQPLWIPRYEYSMGL 61

Query: 391  SKFL--GTHWLLGKILSLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIG 561
            + +L     W+ G + ++  GS   P +WN P +  E  YPLII SHGLG FR  YSA  
Sbjct: 62   ADYLQYNKRWV-GLLFNVGIGSCRLPVSWNGPFKAKESGYPLIILSHGLGGFRASYSAFC 120

Query: 562  TDLASYGFIVAAVEHRDGSASATYFFK----DQSAAEIRNKTWLYLRTLGKGEEEFPLRN 729
             +LAS GF+VAAVEHRD SA+ATYF K    + S AE   + WL  R + +GE+EF +RN
Sbjct: 121  MELASRGFVVAAVEHRDQSAAATYFCKPTSQESSPAESLEEEWLPFRRIKEGEKEFHVRN 180

Query: 730  EQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATV 909
             QV QR +EC + L ++ D   GK+V NV     D+  LK SIDR+++AVMGHSFGGAT 
Sbjct: 181  PQVHQRVKECVRVLRILQDASAGKTVVNVFPGGLDLMTLKGSIDRNRVAVMGHSFGGATA 240

Query: 910  LQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATHRGE 1089
            +  L+++ +FRC IALDAWMFP+  + Y +   P+FF + E FQ   ++  MK    + E
Sbjct: 241  VLALTQEVQFRCAIALDAWMFPLERDFYPKARGPVFFINVEKFQTVESVNLMKKICAQHE 300

Query: 1090 K 1092
            +
Sbjct: 301  Q 301


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,731,931
Number of extensions: 1029263
Number of successful extensions: 3309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3296
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001106484.1| platelet-activating factor acetylhydrolase [...   604   e-173
Alignment   gi|XP_003356259.1| PREDICTED: platelet-activating factor acetyl...   236   1e-62
Alignment   gi|XP_003356257.1| PREDICTED: platelet-activating factor acetyl...   236   1e-62
Alignment   gi|XP_003356685.1| PREDICTED: platelet-activating factor acetyl...   132   4e-31

>ref|NP_001106484.1| platelet-activating factor acetylhydrolase [Sus scrofa].
          Length = 436

 Score =  604 bits (1558), Expect = e-173
 Identities = 295/304 (97%), Positives = 297/304 (97%)
 Frame = +1

Query: 181  WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 360
            WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW
Sbjct: 38   WVSKIQALMAAAGFGQTKIPRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPSDTLW 97

Query: 361  IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 540
            IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR
Sbjct: 98   IPDKEYFWGLSKFLGTHWLLGKILSLFFGSMTTPAAWNSPLRTGEKYPLIIFSHGLGAFR 157

Query: 541  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 720
            TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP
Sbjct: 158  TIYSAIGTDLASYGFIVAAVEHRDGSASATYFFKDQSAAEIRNKTWLYLRTLGKGEEEFP 217

Query: 721  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 900
            LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG
Sbjct: 218  LRNEQVRQRAEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGG 277

Query: 901  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMKNATH 1080
            ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFF +SEHFQYPSNILRMK    
Sbjct: 278  ATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFINSEHFQYPSNILRMKKCYS 337

Query: 1081 RGEK 1092
             G +
Sbjct: 338  PGRE 341


>ref|XP_003356259.1| PREDICTED: platelet-activating factor acetylhydrolase 2,
            cytoplasmic-like [Sus scrofa].
          Length = 392

 Score =  236 bits (603), Expect = 1e-62
 Identities = 126/287 (43%), Positives = 179/287 (62%), Gaps = 10/287 (3%)
 Frame = +1

Query: 238  PRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPS--DTLWIPDKEYFWGLSKFL--G 405
            P   G + VGC D+M   + +G+F RL+YP Q+ + +    LWIP  EY  GL+ +L   
Sbjct: 10   PPVTGPHLVGCGDVMEGQSLQGSFFRLFYPCQEAEEATEQPLWIPRYEYCTGLADYLKFN 69

Query: 406  THWLLGKILSLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIGTDLASYG 582
              W  G + +L  GS   P +WN P +T +  YPL+IFSHGLGAFRT+YSA   +LAS G
Sbjct: 70   KRWG-GSLFNLAVGSCRLPVSWNGPFKTKDSGYPLVIFSHGLGAFRTLYSAFCMELASRG 128

Query: 583  FIVAAVEHRDGSASATYFFKD-----QSAAEIRNKTWLYLRTLGKGEEEFPLRNEQVRQR 747
            F+VA  EHRDGSA+AT F K      +S  E   + W+  R + +GE+EF +RN QV QR
Sbjct: 129  FVVAVPEHRDGSAAATCFCKQAPEDSRSDNESSEEEWIPHRQIEEGEKEFYVRNYQVHQR 188

Query: 748  AEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATVLQTLSE 927
              EC + L ++ ++  G++V N+L    D+  LK SID  ++A+MGHSFGGAT +  L++
Sbjct: 189  VSECMRVLRILQEVTAGQTVLNILPGGLDLMTLKGSIDMSRVAIMGHSFGGATAVLALAK 248

Query: 928  DQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMK 1068
            + +FRC +ALDAWMFP+  + Y     P+FF ++E FQ   ++  MK
Sbjct: 249  ETQFRCAVALDAWMFPLERDFYPTARGPVFFINAEKFQTMESVNLMK 295


>ref|XP_003356257.1| PREDICTED: platelet-activating factor acetylhydrolase 2,
            cytoplasmic-like [Sus scrofa].
          Length = 392

 Score =  236 bits (603), Expect = 1e-62
 Identities = 126/287 (43%), Positives = 179/287 (62%), Gaps = 10/287 (3%)
 Frame = +1

Query: 238  PRGNGSYSVGCTDLMFDYTQKGTFLRLYYPSQDGDPS--DTLWIPDKEYFWGLSKFL--G 405
            P   G + VGC D+M   + +G+F RL+YP Q+ + +    LWIP  EY  GL+ +L   
Sbjct: 10   PPVTGPHLVGCGDVMEGQSLQGSFFRLFYPCQEAEEATEQPLWIPRYEYCTGLADYLKFN 69

Query: 406  THWLLGKILSLFFGSMTTPAAWNSPLRTGEK-YPLIIFSHGLGAFRTIYSAIGTDLASYG 582
              W  G + +L  GS   P +WN P +T +  YPL+IFSHGLGAFRT+YSA   +LAS G
Sbjct: 70   KRWG-GSLFNLAVGSCRLPVSWNGPFKTKDSGYPLVIFSHGLGAFRTLYSAFCMELASRG 128

Query: 583  FIVAAVEHRDGSASATYFFKD-----QSAAEIRNKTWLYLRTLGKGEEEFPLRNEQVRQR 747
            F+VA  EHRDGSA+AT F K      +S  E   + W+  R + +GE+EF +RN QV QR
Sbjct: 129  FVVAVPEHRDGSAAATCFCKQAPEDSRSDNESSEEEWIPHRQIEEGEKEFYVRNYQVHQR 188

Query: 748  AEECSQALSMILDMDRGKSVKNVLDLEFDVEQLKDSIDRDKIAVMGHSFGGATVLQTLSE 927
              EC + L ++ ++  G++V N+L    D+  LK SID  ++A+MGHSFGGAT +  L++
Sbjct: 189  VSECMRVLRILQEVTAGQTVLNILPGGLDLMTLKGSIDMSRVAIMGHSFGGATAVLALAK 248

Query: 928  DQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNILRMK 1068
            + +FRC +ALDAWMFP+  + Y     P+FF ++E FQ   ++  MK
Sbjct: 249  ETQFRCAVALDAWMFPLERDFYPTARGPVFFINAEKFQTMESVNLMK 295


>ref|XP_003356685.1| PREDICTED: platelet-activating factor acetylhydrolase-like [Sus
            scrofa].
          Length = 166

 Score =  132 bits (332), Expect = 4e-31
 Identities = 62/71 (87%), Positives = 64/71 (90%)
 Frame = +1

Query: 880  MGHSFGGATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFFHSEHFQYPSNIL 1059
            MGHSFGGATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFF +SEHFQYPSNIL
Sbjct: 1    MGHSFGGATVLQTLSEDQRFRCGIALDAWMFPVGDEVYSRIPQPLFFINSEHFQYPSNIL 60

Query: 1060 RMKNATHRGEK 1092
            RMK     G +
Sbjct: 61   RMKKCYSPGRE 71


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,753,475
Number of extensions: 759987
Number of successful extensions: 2392
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2385
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002715
         (1123 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr07                                                         337   8e-90

>Sscrofa_Chr07 
||          Length = 134764511

 Score =  337 bits (170), Expect = 8e-90
 Identities = 176/178 (98%)
 Strand = Plus / Minus

                                                                            
Query: 1        gaccgcgccccgcggacagaccgcgaaggctgcacgcagcctcccgcctcccgtcccgag 60
                ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 48192145 gaccgcgccccgcggacagaccgcgaaggctgcgctcagcctcccgcctcccgtcccgag 48192086

                                                                            
Query: 61       gtcacggtgacccggtgaccgagatcggcagaatctgccgtacttgcagctagcaaacag 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192085 gtcacggtgacccggtgaccgagatcggcagaatctgccgtacttgcagctagcaaacag 48192026

                                                                          
Query: 121      cgggcagggtggacgagcccggtccgggttccggcgagcagctccccgcggcgcccgg 178
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48192025 cgggcagggtggacgagcccggtccgggttccggcgagcagctccccgcggcgcccgg 48191968



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 299      agggcaccttcctgcgtttgtattatccgtcccaagatggtgacccttctgacaccctct 358
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48167373 agggcaccttcctgcgtttgtattatccgtcccaagatggtgacccttctgacaccctct 48167314

                                                                            
Query: 359      ggatcccagacaaagagtatttttggggtcttagtaaatttctcggaacacactggcttc 418
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48167313 ggatcccagacaaagagtatttttggggtcttagtaaatttctcggaacacactggcttc 48167254

                                             
Query: 419      taggcaaaattctaagcttattttttggt 447
                |||||||||||||||||||||||||||||
Sbjct: 48167253 taggcaaaattctaagcttattttttggt 48167225



 Score =  258 bits (130), Expect = 6e-66
 Identities = 130/130 (100%)
 Strand = Plus / Minus

                                                                            
Query: 607      agagatggatctgcatctgcgacttactttttcaaggaccaatctgctgcagaaataagg 666
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48161027 agagatggatctgcatctgcgacttactttttcaaggaccaatctgctgcagaaataagg 48160968

                                                                            
Query: 667      aacaagacttggctctatctgagaaccctcggaaaaggggaggaggagtttccactacgc 726
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48160967 aacaagacttggctctatctgagaaccctcggaaaaggggaggaggagtttccactacgc 48160908

                          
Query: 727      aacgagcagg 736
                ||||||||||
Sbjct: 48160907 aacgagcagg 48160898



 Score =  248 bits (125), Expect = 6e-63
 Identities = 158/169 (93%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                            
Query: 939      caggtgcggtattgccctggatgcatggatgtttccagtaggcgatgaggtctattcccg 998
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48153392 caggtgcggtattgccctggatgcatggatgtttccagtaggcgatgaggtctattcccg 48153333

                                                                            
Query: 999      aattcctcagcccctcnnnnnnnnccactcggaacatttccaatatccttctaacatcct 1058
                ||||||||||||||||        | ||||||||||||||||||||||||||||||||||
Sbjct: 48153332 aattcctcagcccctcttttttatcaactcggaacatttccaatatccttctaacatcct 48153273

                                                                 
Query: 1059     cagaatg-aaaaatgctactcaccggggagagaaag-aaaatgattaca 1105
                ||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 48153272 cagaatgaaaaaatgctactcaccggggagagaaagaaaaatgattaca 48153224



 Score =  246 bits (124), Expect = 2e-62
 Identities = 124/124 (100%)
 Strand = Plus / Minus

                                                                            
Query: 178      gcatgggtcagtaagatccaagcgctgatggctgctgcaggctttggccaaacgaaaatc 237
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48168185 gcatgggtcagtaagatccaagcgctgatggctgctgcaggctttggccaaacgaaaatc 48168126

                                                                            
Query: 238      cccagaggaaatggatcgtactccgtcggttgtaccgacctgatgtttgattacactcag 297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48168125 cccagaggaaatggatcgtactccgtcggttgtaccgacctgatgtttgattacactcag 48168066

                    
Query: 298      aagg 301
                ||||
Sbjct: 48168065 aagg 48168062



 Score =  232 bits (117), Expect = 3e-58
 Identities = 117/117 (100%)
 Strand = Plus / Minus

                                                                            
Query: 734      aggtacggcaaagagcagaggagtgttctcaagctctcagtatgattctggacatggatc 793
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48159441 aggtacggcaaagagcagaggagtgttctcaagctctcagtatgattctggacatggatc 48159382

                                                                         
Query: 794      gtgggaagtcagtgaagaatgtattagatctagagtttgatgtggaacagctgaagg 850
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48159381 gtgggaagtcagtgaagaatgtattagatctagagtttgatgtggaacagctgaagg 48159325



 Score =  190 bits (96), Expect = 1e-45
 Identities = 96/96 (100%)
 Strand = Plus / Minus

                                                                            
Query: 848      aggactctatcgatagggataaaatagcagtgatgggacattcttttggtggagccacag 907
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48156906 aggactctatcgatagggataaaatagcagtgatgggacattcttttggtggagccacag 48156847

                                                    
Query: 908      ttcttcagaccctgagtgaagaccagagattcaggt 943
                ||||||||||||||||||||||||||||||||||||
Sbjct: 48156846 ttcttcagaccctgagtgaagaccagagattcaggt 48156811



 Score =  174 bits (88), Expect = 7e-41
 Identities = 94/96 (97%)
 Strand = Plus / Minus

                                                                            
Query: 445      ggttcaatgacaactcctgcagcctggaattcccctctgaggactggtgaaaaataccca 504
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48164653 ggttcaatgacaactcctgcagcctggaattcccctctgaggactggtgaaaaataccca 48164594

                                                    
Query: 505      ctcatcattttttctcatggtcttggagcattcagg 540
                || |||||||||||||||||||| ||||||||||||
Sbjct: 48164593 ctaatcattttttctcatggtctaggagcattcagg 48164558



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                            
Query: 538      aggacaatttattctgcgattggcactgacctggcatcttacgggtttatagttgctgct 597
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48161657 aggacaatttattctgcgattggcactgacctggcatcttacgggtttatagttgctgct 48161598

                           
Query: 598      gtagaacacag 608
                |||||||||||
Sbjct: 48161597 gtagaacacag 48161587


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,814,248
Number of extensions: 189
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 10
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)