Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093182.1| GTPase IMAP family member 6 [Bos taurus]. 286 3e-77
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 173 4e-43
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 172 5e-43
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 171 1e-42
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 171 2e-42
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 170 3e-42
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 170 3e-42
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 170 3e-42
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 170 3e-42
Alignment gi|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus]. 167 3e-41
>ref|NP_001093182.1| GTPase IMAP family member 6 [Bos taurus].
Length = 341
Score = 286 bits (733), Expect = 3e-77
Identities = 166/321 (51%), Positives = 200/321 (62%), Gaps = 8/321 (2%)
Frame = +2
Query: 191 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDAKR--SLXXXXXXXXX 364
MS ++ W + HS AC V AL G+T++S ++ APGD + S
Sbjct: 1 MSSMFVYVWGTVTDLLHS----ACSVLALNGDTESSGEHTAPGDTRHGHSSCPTDSRAME 56
Query: 365 XXXXXLIVQENFKEGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGR 544
+++ E +EG SQ+P+ DRSGG DE T + L L+LVGK GSGKSATGNSILGR
Sbjct: 57 EEEFEILLPEEPEEGTSQDPSPDRSGGFLGDEGTLQTLWLILVGKSGSGKSATGNSILGR 116
Query: 545 KLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPG 724
++F+ KLS+RPVTQ FQ+GCR W GREL+VIDTPDILSP AA AQG A S P
Sbjct: 117 RVFESKLSARPVTQAFQQGCRAWEGRELQVIDTPDILSPWAAGWATAQGVGEAGTGSLPK 176
Query: 725 PHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN 904
+AVLLVTQLGRFT+EDQ+V RL+EVFG G+LA TILVFTRKEDL G SLE YLRETDN
Sbjct: 177 QYAVLLVTQLGRFTEEDQQVAGRLEEVFGKGILARTILVFTRKEDLDGRSLETYLRETDN 236
Query: 905 RELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQAC---HYS 1075
R LA+LD +C RRHCGFNNK +L E EG YS A H +
Sbjct: 237 RALAKLDDVCSRRHCGFNNKGDGAEQETQLRELMRHVEGVLKEPEGCAYSPPATPQPHAA 296
Query: 1076 P---WNVLLQQAGEGQLHQGW 1129
P W + A EG+ Q W
Sbjct: 297 PRESWGLWWLGAKEGRGDQAW 317
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 321
Score = 173 bits (438), Expect = 4e-43
Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
Frame = +2
Query: 386 VQENFKEGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKC 559
+ N EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+
Sbjct: 10 IYHNKMEGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFES 69
Query: 560 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVL 739
KL ++ VT+ QR +W GR + V+DTP I A + S PGPH +L
Sbjct: 70 KLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLL 129
Query: 740 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 919
LVTQLGRFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +
Sbjct: 130 LVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRR 189
Query: 920 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 1099
L C RR+C FNN+ + E++G + +N+ +S +LLQ
Sbjct: 190 LVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQM 247
Query: 1100 AGE 1108
G+
Sbjct: 248 GGD 250
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos taurus].
Length = 321
Score = 172 bits (437), Expect = 5e-43
Identities = 96/243 (39%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
Frame = +2
Query: 386 VQENFKEGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKC 559
+ N EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+
Sbjct: 10 IYHNKMEGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFES 69
Query: 560 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVL 739
KL ++ VT+ QR +W GR + V+DTP I A + S PGPH +L
Sbjct: 70 KLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLL 129
Query: 740 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 919
LVTQLGRFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +
Sbjct: 130 LVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRR 189
Query: 920 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 1099
L C RR+C FNN+ + E++G + +N+ +S +LLQ
Sbjct: 190 LVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQM 247
Query: 1100 AGE 1108
G+
Sbjct: 248 GGD 250
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos taurus].
Length = 307
Score = 171 bits (434), Expect = 1e-42
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 2/237 (0%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP 577
EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+ KL ++
Sbjct: 2 EGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQA 61
Query: 578 VTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLG 757
VT+ QR +W GR + V+DTP I A + S PGPH +LLVTQLG
Sbjct: 62 VTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLG 121
Query: 758 RFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICE 937
RFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +L C
Sbjct: 122 RFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECG 181
Query: 938 RRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGE 1108
RR+C FNN+ + E++G + +N+ +S +LLQ G+
Sbjct: 182 RRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQMGGD 236
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 171 bits (433), Expect = 2e-42
Identities = 95/237 (40%), Positives = 133/237 (56%), Gaps = 2/237 (0%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP 577
EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+ KL ++
Sbjct: 2 EGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQA 61
Query: 578 VTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLG 757
VT+ QR +W GR + V+DTP I A + S PGPH +LLVTQLG
Sbjct: 62 VTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLG 121
Query: 758 RFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICE 937
RFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +L C
Sbjct: 122 RFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECG 181
Query: 938 RRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGE 1108
RR+C FNN+ + E++G + +N+ +S +LLQ G+
Sbjct: 182 RRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQMGGD 236
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 310
Score = 170 bits (430), Expect = 3e-42
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +2
Query: 470 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 649
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 38 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 97
Query: 650 ILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 820
+ SP A PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 98 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 155
Query: 821 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 156 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 203
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 298
Score = 170 bits (430), Expect = 3e-42
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +2
Query: 470 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 649
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 650 ILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 820
+ SP A PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 821 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 310
Score = 170 bits (430), Expect = 3e-42
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +2
Query: 470 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 649
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 38 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 97
Query: 650 ILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 820
+ SP A PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 98 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 155
Query: 821 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 156 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 203
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 298
Score = 170 bits (430), Expect = 3e-42
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +2
Query: 470 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 649
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 650 ILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 820
+ SP A PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 821 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
>ref|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus].
Length = 294
Score = 167 bits (422), Expect = 3e-41
Identities = 87/168 (51%), Positives = 115/168 (68%), Gaps = 3/168 (1%)
Frame = +2
Query: 470 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 649
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 650 ILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 820
+ SP A PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 821 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
A ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AARAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,055,759
Number of extensions: 1539271
Number of successful extensions: 8088
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 8014
Number of HSP's successfully gapped: 26
Length of query: 496
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 390
Effective length of database: 14,174,046
Effective search space: 5527877940
Effective search space used: 5527877940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 281 1e-75
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 168 1e-41
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 167 2e-41
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 147 2e-35
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 146 6e-35
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 122 7e-28
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 107 1e-24
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 281 bits (719), Expect = 1e-75
Identities = 150/256 (58%), Positives = 179/256 (69%), Gaps = 2/256 (0%)
Frame = +2
Query: 191 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDA--KRSLXXXXXXXXX 364
MS+IYS D + SR + SA KGETKNS++++APGD + S
Sbjct: 1 MSFIYSYTVDTFLHLLQSRSSKVHNASAPKGETKNSQEHVAPGDREHRHSSCPAADSVPE 60
Query: 365 XXXXXLIVQENFKEGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGR 544
I++E+ L+ +P GGL RTP+KLRLLLVGK GSGKSATGNSILGR
Sbjct: 61 EEEWEHILEEDPAGELNLDPRPGILGGLWEAPRTPQKLRLLLVGKSGSGKSATGNSILGR 120
Query: 545 KLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPG 724
+ F +LS +PVT+D QRG WAGRELEVIDTPD+LSP+A P AA+ A+AFS PG
Sbjct: 121 REFPSRLSPQPVTRDLQRGSGAWAGRELEVIDTPDLLSPQAGPEAAARAICEAVAFSAPG 180
Query: 725 PHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN 904
PHAVLLVTQLGRFT+ED++ VR LQE FGVGVLAHT+LVFTR+EDLGGGSLEEY+R TDN
Sbjct: 181 PHAVLLVTQLGRFTEEDRQAVRGLQEAFGVGVLAHTVLVFTRREDLGGGSLEEYVRRTDN 240
Query: 905 RELAQLDVICERRHCG 952
A LD +C RRHCG
Sbjct: 241 LHPALLDAVCARRHCG 256
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 168 bits (426), Expect = 1e-41
Identities = 93/190 (48%), Positives = 122/190 (64%), Gaps = 9/190 (4%)
Frame = +2
Query: 422 PTQDRSGGL------RADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 583
P D+S GL + + P +L L+LVG+ G+GKSATGNSILG + F +L++ PVT
Sbjct: 66 PLSDQSEGLGTARVQKQKPKAPPRLGLILVGRTGAGKSATGNSILGHRSFPSRLAAAPVT 125
Query: 584 QDFQRGCRVWAGRELEVIDTPDILSP---RAAPGVAAQGFSRAIAFSFPGPHAVLLVTQL 754
+ G R WAG +EV DTPD+ S RA G A +G R S PGPHA+LLVTQL
Sbjct: 126 RTCALGSRRWAGWRVEVTDTPDLFSAEGRRADRGCAERG--RCYLLSAPGPHALLLVTQL 183
Query: 755 GRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVIC 934
GRFT +D++ VR ++E+FG GVLA ++VFTR+EDL G S +Y+R TDNR L L C
Sbjct: 184 GRFTAQDEQAVRGVRELFGPGVLARAVVVFTRREDLAGASPHDYVRATDNRALRALVAEC 243
Query: 935 ERRHCGFNNK 964
R C +N+
Sbjct: 244 GGRVCALDNR 253
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 167 bits (424), Expect = 2e-41
Identities = 90/216 (41%), Positives = 121/216 (56%)
Frame = +2
Query: 464 TPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDT 643
TP LR++LVGK GSG+SATGNSIL + +F+ +L ++PVT+ Q W GR + V+DT
Sbjct: 296 TPPSLRIILVGKTGSGRSATGNSILCQPVFESRLGNQPVTKTCQGETGTWNGRSILVVDT 355
Query: 644 PDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVL 823
P + A + S PGPH +LLVT LGRFT +D VRR++EVFG G +
Sbjct: 356 PSLFEAEAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAM 415
Query: 824 AHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXX 1003
H +++FT KEDL G SL++YL +TDN L L C RR+C FNN+
Sbjct: 416 RHAVVLFTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARL 475
Query: 1004 XXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEG 1111
+ E G +YSN + LLQ+ G G
Sbjct: 476 MAVVERLERETGGAFYSNDLFFQAQ---LLQRGGGG 508
Score = 164 bits (415), Expect = 2e-40
Identities = 83/195 (42%), Positives = 118/195 (60%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
KLR++LVGK G+GKSATGNSIL ++ F+ +L+++P T+ W RE+ +IDTPD+
Sbjct: 22 KLRIILVGKTGTGKSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGEREMVIIDTPDM 81
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
S R + R S PGPH +LLVTQLGRFT +DQ+VV+R++E+FG V+ HT
Sbjct: 82 FSERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRHT 141
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 1012
I++FT KEDL G SL +Y+ + DN+ L +L C R C F+N
Sbjct: 142 IVLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMAL 201
Query: 1013 XXSILWENEGHYYSN 1057
++ E G +Y+N
Sbjct: 202 MEDLVLERRGEHYTN 216
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 147 bits (372), Expect = 2e-35
Identities = 74/194 (38%), Positives = 115/194 (59%)
Frame = +2
Query: 476 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDIL 655
LR++LVGK GSGKSAT N+ILGR++F ++++ +T++ Q+ R W GR+L V+DTP +
Sbjct: 9 LRIVLVGKTGSGKSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLLVVDTPGLF 68
Query: 656 SPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTI 835
+ + SR + S PGPHA+LLV QLGR+T+E+Q+ V ++ VFG L H I
Sbjct: 69 DTKETLDTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPALKHMI 128
Query: 836 LVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXX 1015
++FTRK++L SL +++ D + L + C R+C FNN+
Sbjct: 129 MLFTRKDNLEDQSLSDFIESADVK-LKNITKECGDRYCAFNNRAKEAEKEAQVQELVELI 187
Query: 1016 XSILWENEGHYYSN 1057
++ N G Y+S+
Sbjct: 188 EQMVQSNGGAYFSD 201
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 146 bits (368), Expect = 6e-35
Identities = 76/206 (36%), Positives = 121/206 (58%)
Frame = +2
Query: 443 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 622
GL + + +LRL+LVGK G+GKSATGNSILG K+F ++++ VT+ ++G W GR
Sbjct: 21 GLGSQDCRDSQLRLVLVGKTGAGKSATGNSILGEKVFHSSIAAKSVTKVCKKGSSRWHGR 80
Query: 623 ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 802
EL V+DTP I + + I + PGPHA+LLV LGR+TQE+++ + ++ +
Sbjct: 81 ELIVVDTPGIFDTEVQDADTCREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQ 140
Query: 803 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 982
+FG + IL+FTRK+DL G ++YL++ + ++ +L + R+C FNN+
Sbjct: 141 MFGPRARRYMILLFTRKDDLDGMHFQDYLKDA-SEDIQELVDMFRDRYCVFNNRATGTEQ 199
Query: 983 XXXXXXXXXXXXSILWENEGHYYSNQ 1060
++ ENEG Y+N+
Sbjct: 200 EAQRMQLLTLVQRVVMENEGGCYTNK 225
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 122 bits (307), Expect = 7e-28
Identities = 76/196 (38%), Positives = 105/196 (53%), Gaps = 6/196 (3%)
Frame = +2
Query: 395 NFKEGLSQEPTQDRSGGLRADERTPR------KLRLLLVGKPGSGKSATGNSILGRKLFK 556
N + L R+ ER P +LRLLL+G+ G GKSATGN+ILGR +F
Sbjct: 39 NLRTTLGAAAADSRTDESLGQEREPEPGCSRPELRLLLLGRSGVGKSATGNTILGRSMFV 98
Query: 557 CKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAV 736
K S++ VT+ QR R L VIDTP + S + + R + P H +
Sbjct: 99 SKFSNQMVTKVCQRESRATGEGTLVVIDTPYLFSSMSPAEDKQRNIERCLELCAPSLHVL 158
Query: 737 LLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELA 916
LLV +G + ED+EVV +QEVFG + I+VFTRK+DL G S+++Y+ D+ L
Sbjct: 159 LLVIAIGCYELEDKEVVCGVQEVFGAEARRYMIVVFTRKDDLEGDSVQDYIEGLDS--LR 216
Query: 917 QLDVICERRHCGFNNK 964
+L C R+C NNK
Sbjct: 217 ELVENCGGRYCALNNK 232
Score = 122 bits (305), Expect = 1e-27
Identities = 75/199 (37%), Positives = 113/199 (56%), Gaps = 7/199 (3%)
Frame = +2
Query: 392 ENFKEGLSQEPTQDRSGGLRADERTP-------RKLRLLLVGKPGSGKSATGNSILGRKL 550
++ K SQ+ + GG + T +L++LLVGK G+GKSA GNS+LG+++
Sbjct: 273 DSVKGAASQKEDKPHGGGELQRQATGYEPNPGIHELKVLLVGKRGAGKSAAGNSLLGKRV 332
Query: 551 FKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPH 730
F+ K S VT+ F R+W R + +IDTPDI S + + F GPH
Sbjct: 333 FETKFSEESVTRRFVLESRIWRERRVVIIDTPDISSSKDIKAELRR-------HVFGGPH 385
Query: 731 AVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRE 910
A LLVT LG F+++D+ V+ LQ FG + + I++FTRKEDLG LE +L+ + +
Sbjct: 386 AFLLVTPLGSFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMFLK-SRSTA 444
Query: 911 LAQLDVICERRHCGFNNKV 967
L +L C+ R+C F+ +V
Sbjct: 445 LCKLIKKCKDRYCVFSYRV 463
Score = 119 bits (298), Expect = 8e-27
Identities = 71/170 (41%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Frame = +2
Query: 461 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 640
R L L+LVGK G GKSATGN+ILGR F + ++PVT+ Q R+W +E+ V+D
Sbjct: 494 REQEPLSLVLVGKSGPGKSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWGQQEVVVVD 553
Query: 641 TPDILSPRAAPGVAAQ--GFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGV 814
P + +A G +Q R G ++LV QLG FTQED+ V+ L+ +FG
Sbjct: 554 MPSLCLMASAEGGPSQLEEEVRRCWSCCKGNKILVLVFQLGWFTQEDKRAVKELETIFGE 613
Query: 815 GVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
VL +TI++FTRKEDL + +Y++ +NR L + C R C FNNK
Sbjct: 614 EVLKYTIVLFTRKEDL-EVDIADYIKNAENRTLQNIIKRCGGRICAFNNK 662
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 107 bits (267), Expect(2) = 1e-24
Identities = 57/133 (42%), Positives = 74/133 (55%)
Frame = +2
Query: 713 SFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLR 892
S PGPH +LLVT LGRFT +D VRR++EVFG G + H +++FT KEDL G SL++YL
Sbjct: 123 SAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLAGESLDDYLA 182
Query: 893 ETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHY 1072
+TDN L L C RR+C FNN+ + E G +YSN
Sbjct: 183 DTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERLERETGGAFYSNDLFFQ 242
Query: 1073 SPWNVLLQQAGEG 1111
+ LLQ+ G G
Sbjct: 243 AQ---LLQRGGGG 252
Score = 25.4 bits (54), Expect(2) = 1e-24
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 526 KQHPRPEAVQVQAQFQTGDPGLPAGVSGVGWEGARGHRH 642
+QHP P V VQA D +P G + + G RH
Sbjct: 68 EQHPLPAGVPVQAGEPACDQNVPGGDRDLERKEHPGGRH 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,353,232
Number of extensions: 1585131
Number of successful extensions: 8294
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8254
Number of HSP's successfully gapped: 11
Length of query: 496
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 389
Effective length of database: 15,307,552
Effective search space: 5954637728
Effective search space used: 5954637728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 306 3e-83
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 166 5e-41
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 164 2e-40
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 163 3e-40
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 163 3e-40
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 142 6e-34
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 141 2e-33
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 136 4e-32
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 306 bits (784), Expect = 3e-83
Identities = 168/280 (60%), Positives = 199/280 (71%), Gaps = 2/280 (0%)
Frame = +2
Query: 383 IVQENFKEGLSQEPTQDRSGGLRADE-RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKC 559
I QEN E LSQ+P + SGGLR E +TPR+LRL+L+GK GSGKSATGNSILGR +F+
Sbjct: 9 IPQENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGRDVFES 68
Query: 560 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVL 739
KLS+RPVT+ QR R WAG+ELEVIDTP+ILSP+ +P VA +AI S PGPHAVL
Sbjct: 69 KLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVA-DAICQAIVLSAPGPHAVL 127
Query: 740 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 919
LVTQLGRFT EDQ+VVRRLQEVFGVGVL HTILVFTRKEDL GGSLE+Y+RET+N+ LA
Sbjct: 128 LVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDLAGGSLEDYVRETNNQALAW 187
Query: 920 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 1099
LDV RRHCGFNN+ +I+WENEG YYSN+A Y+ N L++
Sbjct: 188 LDVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEGDYYSNKAYQYTQQNFRLKE 247
Query: 1100 AGEGQLHQGWGCEAGLSQESWL*TLCR-SRRLEGAHTQLL 1216
E Q+ QG G E +ESWL L + + E AH LL
Sbjct: 248 LQERQVSQGQGSEDVPGEESWLEGLSQIQKESEEAHRCLL 287
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 166 bits (420), Expect = 5e-41
Identities = 96/256 (37%), Positives = 136/256 (53%), Gaps = 14/256 (5%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADE--------------RTPRKLRLLLVGKPGSGKSATGNSILG 541
E +Q+P +R GG + + TP LR++LVGK G GKSATGNSILG
Sbjct: 194 EDRAQQPFLERMGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILG 253
Query: 542 RKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFP 721
+ +F+ KL ++ VT+ Q W GR++ V+DTP I +A + S P
Sbjct: 254 QPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAP 313
Query: 722 GPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETD 901
GPH +LLV QLGRFT +D +R+++EVFG G + H +++FT KEDLGG +L++Y+ TD
Sbjct: 314 GPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTD 373
Query: 902 NRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPW 1081
N L L CERR+C FNN + E EG ++SN +
Sbjct: 374 NCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQ- 432
Query: 1082 NVLLQQAGEGQLHQGW 1129
LLQ+ G G + +
Sbjct: 433 --LLQRTGAGACQEDY 446
Score = 103 bits (258), Expect = 3e-22
Identities = 58/118 (49%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Frame = +2
Query: 452 ADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELE 631
A R RL+LVG+ G+GKSATGNSILG++ F +L + VT+ G R W +E
Sbjct: 20 AQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVE 79
Query: 632 VIDTPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRL 796
V+DTPDI S + + PG +G S PGPHA+LLVTQLGRFT +DQ+ VR+L
Sbjct: 80 VVDTPDIFSSQVSKTDPGCEERG--HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQL 135
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 164 bits (415), Expect = 2e-40
Identities = 90/222 (40%), Positives = 125/222 (56%)
Frame = +2
Query: 464 TPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDT 643
TP LR++LVGK G GKSATGNSILG+ +F+ KL ++ VT+ Q W GR++ V+DT
Sbjct: 24 TPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDT 83
Query: 644 PDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVL 823
P I +A + S PGPH +LLV QLGRFT +D +R+++EVFG G +
Sbjct: 84 PSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAM 143
Query: 824 AHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXX 1003
H +++FT KEDLGG +L++Y+ TDN L L CERR+C FNN
Sbjct: 144 RHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAEL 203
Query: 1004 XXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEGQLHQGW 1129
+ E EG ++SN + LLQ+ G G + +
Sbjct: 204 LAVIERLGREREGSFHSNDLFLDAQ---LLQRTGAGACQEDY 242
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 163 bits (413), Expect = 3e-40
Identities = 89/206 (43%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Frame = +2
Query: 452 ADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELE 631
A R RL+LVG+ G+GKSATGNSILG++ F +L + VT+ G R W +E
Sbjct: 20 AQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVE 79
Query: 632 VIDTPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 802
V+DTPDI S + + PG +G S PGPHA+LLVTQLGRFT +DQ+ VR++++
Sbjct: 80 VVDTPDIFSSQVSKTDPGCEERG--HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRD 137
Query: 803 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 982
+FG VL ++VFTRKEDL GGSL +Y+ T+NR L +L C R C F+N+
Sbjct: 138 MFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQ 197
Query: 983 XXXXXXXXXXXXSILWENEGHYYSNQ 1060
++ E++G +YSN+
Sbjct: 198 EAQVEQLLGMVEGLVLEHKGAHYSNE 223
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 163 bits (413), Expect = 3e-40
Identities = 80/195 (41%), Positives = 118/195 (60%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
+LR++LVGK G+GKSA GNSIL ++ F+ KL S+ +T+ + W RE+ +IDTPD+
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDM 81
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
S + + R S PGPH +LLVTQLGR+T +DQ+ +R++E+FG + HT
Sbjct: 82 FSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHT 141
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 1012
I++FT KEDL GGSL +Y+ ++DN+ L++L C R C FNN+
Sbjct: 142 IVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDC 201
Query: 1013 XXSILWENEGHYYSN 1057
+L E G +Y+N
Sbjct: 202 IEDLLMEKNGDHYTN 216
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 142 bits (359), Expect = 6e-34
Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Frame = +2
Query: 461 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 640
R L ++LVG+ G+GKSATGNSILG +F +L ++PVT+ Q G R W G+E+ V+D
Sbjct: 434 REKETLNIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVD 493
Query: 641 TPD---ILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 811
TP +L P + R ++ G +LV QLGRFT+ED+ V +L+ +FG
Sbjct: 494 TPSFNQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFG 553
Query: 812 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
+ I++FTRKEDLG G+LE++++ +DN+ L ++ C RR C FNNK
Sbjct: 554 ADFTKYAIMLFTRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNK 604
Score = 132 bits (331), Expect = 1e-30
Identities = 74/164 (45%), Positives = 102/164 (62%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
+LRLLL+GK SGKSATGN+ILG+ +FK K S + V + QR V R++ VIDTPD+
Sbjct: 10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPDL 69
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
S A + + S P HA+LLV +G FT+ED+E + +Q+VFG H
Sbjct: 70 FSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRHI 129
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
I+VFTRK+DLG L++++ + N+ L QL E R+C FNNK
Sbjct: 130 IIVFTRKDDLGDDLLQDFIEK--NKPLKQLVQDYEGRYCIFNNK 171
Score = 114 bits (284), Expect = 3e-25
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 2/188 (1%)
Frame = +2
Query: 401 KEGLSQEPTQDRSGGLRADERTP--RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSR 574
+EG + ++R E+ P +L +LLVGK G+GKSA GNSILGR+ F+ S +
Sbjct: 221 QEGDKPQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQ 280
Query: 575 PVTQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQL 754
VTQ F R W +++ +ID PDI S + S GPHA LLVT L
Sbjct: 281 SVTQSFLSESRSWRKKKVSIIDAPDISSLKNID-------SEVRKHICTGPHAFLLVTPL 333
Query: 755 GRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVIC 934
G +T+ D+ V+ +Q FG + I++ TRKEDLG L+ +LR + N+ L L C
Sbjct: 334 GFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGLIQKC 392
Query: 935 ERRHCGFN 958
+ R+ FN
Sbjct: 393 KNRYSAFN 400
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 141 bits (355), Expect = 2e-33
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Frame = +2
Query: 458 ERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVI 637
E R LR++LVGK GSGKSAT N+ILG ++F +++++ VT++ Q+ R W GR+L V+
Sbjct: 3 ESEDRSLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVV 62
Query: 638 DTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVG 817
DTP + + + + SR I S PGPHA++LV LGR+T+E+Q+ V ++ VFG
Sbjct: 63 DTPGLFDTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKS 122
Query: 818 VLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNN--KVXXXXXXXX 991
+ H +++FTRKE+L G S +++ + D L + C R C F+N K
Sbjct: 123 AMKHMVILFTRKEELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQ 181
Query: 992 XXXXXXXXXSILWENEGHYYSN 1057
++ NEG Y+S+
Sbjct: 182 VQELVELIEKMVQCNEGAYFSD 203
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 136 bits (343), Expect = 4e-32
Identities = 79/233 (33%), Positives = 121/233 (51%)
Frame = +2
Query: 425 TQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGC 604
T S G E +LR++LVGK G+GKSATGNSILGRK+F +++ +T+ ++
Sbjct: 14 TPGASYGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS 73
Query: 605 RVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEV 784
W EL V+DTP I ++ R I + PGPHA+LLV LGR+T+E+ +
Sbjct: 74 SSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKA 133
Query: 785 VRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
++ ++FG + IL+FTRK+DLG +L +YLRE ++ L I R+C NNK
Sbjct: 134 TEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAP-EDIQDLMDIFGDRYCALNNK 192
Query: 965 VXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEGQLHQ 1123
++ EN+ Y+N+ + + Q +LH+
Sbjct: 193 ATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQELHR 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,113,294
Number of extensions: 1543915
Number of successful extensions: 7442
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7377
Number of HSP's successfully gapped: 11
Length of query: 496
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 389
Effective length of database: 14,770,016
Effective search space: 5745536224
Effective search space used: 5745536224
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 233 4e-61
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 164 2e-40
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 162 6e-40
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 135 6e-32
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 135 8e-32
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 124 2e-28
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 124 2e-28
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 123 3e-28
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 233 bits (593), Expect = 4e-61
Identities = 121/209 (57%), Positives = 147/209 (70%)
Frame = +2
Query: 428 QDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCR 607
Q + GL+ + TP++L+LLLVGK GSGKSATGNSILGR+ F+ K+S+RPVT FQ+G R
Sbjct: 88 QGLTKGLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTR 147
Query: 608 VWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 787
+ G+ELEVIDTPDI SP+ P A+ +A PGPHAVLLV Q+GR+T EDQ V
Sbjct: 148 EFEGKELEVIDTPDIFSPQNQPEATAKKICDLLAS--PGPHAVLLVIQVGRYTAEDQAVA 205
Query: 788 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 967
R LQE+FG +LA+TILVFTRKEDL GSLEEY++E +N+ L LDV CERRHCGFNNK
Sbjct: 206 RCLQEIFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKA 265
Query: 968 XXXXXXXXXXXXXXXXXSILWENEGHYYS 1054
ILWENEGH Y+
Sbjct: 266 QGDEQEAQLKKLMEEVELILWENEGHCYT 294
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 171 bits (433), Expect = 1e-42
Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Frame = +2
Query: 455 DERTPR--KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGREL 628
D R P+ +LRL+LVG+ G+GKSATGNSILG+K F +L + PVT+ R+WAG ++
Sbjct: 18 DSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQV 77
Query: 629 EVIDTPDILS---PRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQ 799
EV+DTPDI S PR PG +R S PGPHA+LLVTQLGRFT +D + + ++
Sbjct: 78 EVVDTPDIFSSEIPRTDPGCVET--ARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVK 135
Query: 800 EVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXX 979
+FG V+A T++VFTR+EDL G SL++Y+ TDNR L L C R C NN+
Sbjct: 136 RLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSE 195
Query: 980 XXXXXXXXXXXXXSILWENEGHYYSNQ 1060
++ E+ G +YSN+
Sbjct: 196 REAQAEQLLGMVACLVREHGGAHYSNE 222
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 171 bits (433), Expect = 1e-42
Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Frame = +2
Query: 455 DERTPR--KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGREL 628
D R P+ +LRL+LVG+ G+GKSATGNSILG+K F +L + PVT+ R+WAG ++
Sbjct: 18 DSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQV 77
Query: 629 EVIDTPDILS---PRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQ 799
EV+DTPDI S PR PG +R S PGPHA+LLVTQLGRFT +D + + ++
Sbjct: 78 EVVDTPDIFSSEIPRTDPGCVET--ARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVK 135
Query: 800 EVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXX 979
+FG V+A T++VFTR+EDL G SL++Y+ TDNR L L C R C NN+
Sbjct: 136 RLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSE 195
Query: 980 XXXXXXXXXXXXXSILWENEGHYYSNQ 1060
++ E+ G +YSN+
Sbjct: 196 REAQAEQLLGMVACLVREHGGAHYSNE 222
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 164 bits (414), Expect = 2e-40
Identities = 94/218 (43%), Positives = 119/218 (54%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 583
E L T + GG + R LR+LLVGK G GKSATGNS+L R F+ +L + VT
Sbjct: 2 ETLQNVVTGGKKGGCTSGSRP---LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVT 58
Query: 584 QDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 763
+ Q W GR + V+DTP I +A + PGPH +LLVTQLGRF
Sbjct: 59 RTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRF 118
Query: 764 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERR 943
T ED VR ++EVFGVGV+ H I++FTRKEDL SLEE++ TDNR L L C RR
Sbjct: 119 TAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRR 178
Query: 944 HCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSN 1057
+C FNN+ + E EG ++SN
Sbjct: 179 YCAFNNRASGEEQQGQLAELMALVRRLEQECEGSFHSN 216
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 162 bits (410), Expect = 6e-40
Identities = 89/194 (45%), Positives = 111/194 (57%)
Frame = +2
Query: 476 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDIL 655
LR+LLVGK G GKSATGNSIL R F+ +L + VT+ Q W GR + V+DTP I
Sbjct: 27 LRILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDTPPIF 86
Query: 656 SPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTI 835
+A + PGPH +LLVTQLGRFT ED VR ++EVFGVGV+ H I
Sbjct: 87 ESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 836 LVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXX 1015
++FTRKEDL SLEE++ TDNR L L C RR+C FNN+
Sbjct: 147 VLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMALV 206
Query: 1016 XSILWENEGHYYSN 1057
+ E EG ++SN
Sbjct: 207 RRLEQECEGSFHSN 220
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 135 bits (341), Expect = 6e-32
Identities = 75/200 (37%), Positives = 111/200 (55%)
Frame = +2
Query: 458 ERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVI 637
E + LR++LVGK GSGKSAT N+ILG+K F +++ VTQ+ Q R W R+L V+
Sbjct: 3 EPSDNSLRIVLVGKTGSGKSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLLVV 62
Query: 638 DTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVG 817
DTP + + SR + S PGPHA++LV QL RFT E+QE V R++ +FG
Sbjct: 63 DTPGLFDTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEE 122
Query: 818 VLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXX 997
V+ + I++FTRK+DL SL +++ ++D L + C R NNK
Sbjct: 123 VMKYMIVLFTRKDDLEDQSLSDFIADSDT-NLKSIIKECGNRCLAINNKAERAERETQVQ 181
Query: 998 XXXXXXXSILWENEGHYYSN 1057
+++ N G Y+S+
Sbjct: 182 ELMGLVETLVQNNGGLYFSH 201
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 135 bits (340), Expect = 8e-32
Identities = 69/196 (35%), Positives = 112/196 (57%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
++R++LVGK G+GKSAT N+ILGR+ F K+ + VT+ QR R W G+ L V+DTP +
Sbjct: 8 EVRIILVGKTGNGKSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLVVVDTPGL 67
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
+ SR + +S PGPHA++LV +L R+T+E+Q+ V ++ +FG L +
Sbjct: 68 FDTKETMKTTCFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALKYM 127
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 1012
I++FT KEDL SL+ ++ + +L + C +R+ FNNK
Sbjct: 128 IILFTHKEDLEDQSLDNFVSDA-GEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIEL 186
Query: 1013 XXSILWENEGHYYSNQ 1060
++ +N G Y+S++
Sbjct: 187 TEKMVAQNGGSYFSDK 202
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 124 bits (311), Expect = 2e-28
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +2
Query: 461 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 640
R L ++L+G+ G+GKSATGN+ILGR F +L ++PVT Q G R +++ V+D
Sbjct: 471 REKELLNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVD 530
Query: 641 TPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 811
TP + P + ++ G +LV QLGRFTQED+ VV +L+ F
Sbjct: 531 TPSFIQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFE 590
Query: 812 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
++ + I++FTRKEDLG G L +Y T N+ L ++ C R C FNNK
Sbjct: 591 ENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNK 641
Score = 109 bits (272), Expect = 6e-24
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 1/188 (0%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 583
+G +Q + G + ++ T LRLLL+GK G+GKSATGN+ILG+ +F+ K S VT
Sbjct: 26 QGERPSASQGQEGNFKQNQGTST-LRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVT 84
Query: 584 QDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 763
Q G+++ VIDTPD+ S + V Q + + +LLVT +G +
Sbjct: 85 DRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHY 144
Query: 764 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN-RELAQLDVICER 940
T+ED+E + + G H I+VFTR+++L SL Y+ ++ +EL + I R
Sbjct: 145 TEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKESLKEL--IKNIGSR 202
Query: 941 RHCGFNNK 964
R C FNNK
Sbjct: 203 RCCTFNNK 210
Score = 107 bits (266), Expect = 3e-23
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP-VTQDFQRGCRVWAGRELEVIDTPD 649
+LR+LL+GK G GKSA GNSILG+++FK + S + VT+ F RVW G+++ +ID+P+
Sbjct: 284 ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPE 343
Query: 650 ILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAH 829
I S + +FPGPHA LLVT LG + D +V ++ +FG
Sbjct: 344 ISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKF 396
Query: 830 TILVFTRKEDLGGGSLEEYLRETD 901
TI++FTRKED +L++ ++E D
Sbjct: 397 TIVLFTRKEDFEDQALDKVIKEND 420
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 124 bits (311), Expect = 2e-28
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +2
Query: 461 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 640
R L ++L+G+ G+GKSATGN+ILGR F +L ++PVT Q G R +++ V+D
Sbjct: 471 REKELLNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVD 530
Query: 641 TPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 811
TP + P + ++ G +LV QLGRFTQED+ VV +L+ F
Sbjct: 531 TPSFIQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFE 590
Query: 812 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 964
++ + I++FTRKEDLG G L +Y T N+ L ++ C R C FNNK
Sbjct: 591 ENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNK 641
Score = 109 bits (272), Expect = 6e-24
Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 1/188 (0%)
Frame = +2
Query: 404 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 583
+G +Q + G + ++ T LRLLL+GK G+GKSATGN+ILG+ +F+ K S VT
Sbjct: 26 QGERPSASQGQEGNFKQNQGTST-LRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVT 84
Query: 584 QDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 763
Q G+++ VIDTPD+ S + V Q + + +LLVT +G +
Sbjct: 85 DRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHY 144
Query: 764 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN-RELAQLDVICER 940
T+ED+E + + G H I+VFTR+++L SL Y+ ++ +EL + I R
Sbjct: 145 TEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKESLKEL--IKNIGSR 202
Query: 941 RHCGFNNK 964
R C FNNK
Sbjct: 203 RCCTFNNK 210
Score = 107 bits (266), Expect = 3e-23
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP-VTQDFQRGCRVWAGRELEVIDTPD 649
+LR+LL+GK G GKSA GNSILG+++FK + S + VT+ F RVW G+++ +ID+P+
Sbjct: 284 ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPE 343
Query: 650 ILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAH 829
I S + +FPGPHA LLVT LG + D +V ++ +FG
Sbjct: 344 ISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKF 396
Query: 830 TILVFTRKEDLGGGSLEEYLRETD 901
TI++FTRKED +L++ ++E D
Sbjct: 397 TIVLFTRKEDFEDQALDKVIKEND 420
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 123 bits (309), Expect = 3e-28
Identities = 66/196 (33%), Positives = 109/196 (55%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
+LR++L+GK G+GKS+TGNSILG K+F + ++ +T+ ++ W G+EL V+DTP I
Sbjct: 30 QLRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGI 89
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
+ +R +A + PGPHA+LLV LGR+T E+ + +++ ++FG
Sbjct: 90 FDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMFGKQARRFM 149
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 1012
IL+ TRK+DL + EYL E + ++ + R+C FNN+
Sbjct: 150 ILLLTRKDDLEDTDIHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASGAEKEEQKMQLLTL 208
Query: 1013 XXSILWENEGHYYSNQ 1060
S++ EN G ++N+
Sbjct: 209 VQSMVRENGGRCFTNK 224
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,066,546
Number of extensions: 1275767
Number of successful extensions: 6038
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5972
Number of HSP's successfully gapped: 17
Length of query: 496
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 391
Effective length of database: 12,463,779
Effective search space: 4873337589
Effective search space used: 4873337589
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 374 e-104
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 174 9e-44
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 162 3e-40
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 161 8e-40
Alignment gi|XP_003360126.1| PREDICTED: GTPase IMAP family member 6-like ... 145 4e-35
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 116 3e-26
Alignment gi|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2... 58 2e-08
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 374 bits (960), Expect = e-104
Identities = 188/205 (91%), Positives = 188/205 (91%)
Frame = +2
Query: 443 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 622
GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR
Sbjct: 66 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 125
Query: 623 ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 802
ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE
Sbjct: 126 ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 185
Query: 803 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 982
VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV
Sbjct: 186 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVEGAEQ 245
Query: 983 XXXXXXXXXXXXSILWENEGHYYSN 1057
SILWENEGHYYSN
Sbjct: 246 EAQLEELMQQIESILWENEGHYYSN 270
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 174 bits (442), Expect = 9e-44
Identities = 90/196 (45%), Positives = 125/196 (63%)
Frame = +2
Query: 473 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 652
+LR++LVGK G+GKSATGNSILG+++F+ +LS++ +T+ W GRE+ VIDTPD+
Sbjct: 67 ELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPDM 126
Query: 653 LSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 832
S R + R S PGPH +LLVTQLGRFT +D++VVRR++E+FG VL HT
Sbjct: 127 FSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHT 186
Query: 833 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 1012
I++FTRKEDL GGSL Y+ +DN+ L++L C R C FNN+
Sbjct: 187 IVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDL 246
Query: 1013 XXSILWENEGHYYSNQ 1060
S++ +G Y+NQ
Sbjct: 247 IESLVRAKKGDCYTNQ 262
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 162 bits (411), Expect = 3e-40
Identities = 102/245 (41%), Positives = 137/245 (55%), Gaps = 13/245 (5%)
Frame = +2
Query: 437 SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWA 616
S L+A + PR LRLLL G+ G+GKS+TGNSILGRK F +L + VT+ WA
Sbjct: 16 SEDLQAALQEPR-LRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWA 74
Query: 617 GRELEVIDTPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 787
+++V+DTPD+ S A P +G R + PGPHA+LLVTQLGRFT +DQ+
Sbjct: 75 EWDVDVLDTPDLFSSEVARTDPDCKERG--RCYLLAAPGPHALLLVTQLGRFTAQDQQAW 132
Query: 788 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 967
R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL C R C FNN+
Sbjct: 133 RGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRA 192
Query: 968 XXXXXXXXXXXXXXXXXSILWENEGHYYSNQACH-------YSPWNVL---LQQAGEGQL 1117
++ + G Y+N H SP L +Q QL
Sbjct: 193 TGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQL 252
Query: 1118 HQGWG 1132
Q WG
Sbjct: 253 KQRWG 257
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 161 bits (408), Expect = 8e-40
Identities = 103/258 (39%), Positives = 142/258 (55%), Gaps = 16/258 (6%)
Frame = +2
Query: 437 SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWA 616
S L+A + PR LRLLL G+ G+GKS+TGNSILGRK F +L + VT+ WA
Sbjct: 20 SEDLQAALQEPR-LRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWA 78
Query: 617 GRELEVIDTPDILSPRAA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 787
+++V+DTPD+ S A P +G R + PGPHA+LLVTQLGRFT +DQ+
Sbjct: 79 EWDVDVLDTPDLFSSEVARTDPDCKERG--RCYLLAAPGPHALLLVTQLGRFTAQDQQAW 136
Query: 788 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 967
R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL C R C FNN+
Sbjct: 137 RGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRA 196
Query: 968 XXXXXXXXXXXXXXXXXSILWENEGHYYSNQACH-------YSPWNVL------LQQAGE 1108
++ + G Y+N H SP L + Q +
Sbjct: 197 TGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 256
Query: 1109 GQLHQGWGCEAGLSQESW 1162
G Q + CE +Q +W
Sbjct: 257 GCCLQRFLCEKPKAQRTW 274
>ref|XP_003360126.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 89
Score = 145 bits (367), Expect = 4e-35
Identities = 72/87 (82%), Positives = 72/87 (82%)
Frame = +2
Query: 191 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDAKRSLXXXXXXXXXXX 370
MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDAKRSL
Sbjct: 1 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDAKRSLFFCPTGGTEEE 60
Query: 371 XXXLIVQENFKEGLSQEPTQDRSGGLR 451
LIVQENFKEGLSQEPTQDRSGG R
Sbjct: 61 ECELIVQENFKEGLSQEPTQDRSGGKR 87
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like [Sus
scrofa].
Length = 315
Score = 116 bits (291), Expect = 3e-26
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 1/216 (0%)
Frame = +2
Query: 413 SQEPTQDR-SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQD 589
+Q+P++ + S GLR +LRL+LVGK G+GKSATGNSILG+K+F +S++ +T+
Sbjct: 3 AQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKH 62
Query: 590 FQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQ 769
++G W RE+ V+DTP I P + R + + PG HA+LLV LGR T+
Sbjct: 63 CEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGXHALLLVIPLGR-TR 121
Query: 770 EDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHC 949
+ + ++ V G + I + TRK+DL G EY RE + + +L R+C
Sbjct: 122 QRAQASSKIXPV-GERAMQRMIXLVTRKDDLEGTDFHEYXREA-SESVRELMGKFRNRYC 179
Query: 950 GFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSN 1057
NN+ ++ E YY+N
Sbjct: 180 VVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTN 215
>ref|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3-like [Sus
scrofa].
Length = 216
Score = 57.8 bits (138), Expect = 2e-08
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Frame = +2
Query: 476 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQD--FQRGCRVWA-----GREL-- 628
+ L L G SGKS+ GN +LG F S VT+D R C + A G+E+
Sbjct: 8 INLALFGMTQSGKSSAGNILLGSTDFHSSFSPSSVTKDCTLGRSCHLHAFMRRGGQEITL 67
Query: 629 --EVIDTPDILSPRAAPGVAAQGFSRAIA--FSFPGPHAVLLV--TQLGRFTQEDQEVVR 790
+V+DTP + Q A+A F G H LLV + QE+ V+
Sbjct: 68 QVQVLDTPGYPHSMLSKKHVKQEVREALARHFGQEGLHLALLVQRADVPLCGQEESSPVQ 127
Query: 791 RLQEVFGVGVLAHTILVFTRKEDL--GGGSLEEYLRETDNRELAQLDVI 931
+QE+ G +T ++FT E + G + EEYLRE + L L+ I
Sbjct: 128 LIQELLGQAWKNYTAILFTHAEKIEEAGFNEEEYLREASDTLLTLLNSI 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,288,327
Number of extensions: 999379
Number of successful extensions: 5249
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5203
Number of HSP's successfully gapped: 7
Length of query: 496
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 393
Effective length of database: 8,779,541
Effective search space: 3450359613
Effective search space used: 3450359613
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002719
(1488 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 2036 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 2036 bits (1027), Expect = 0.0
Identities = 1042/1047 (99%)
Strand = Plus / Minus
Query: 442 aggtctgagggcggatgaacggaccccgcggaagctgaggctcctgctggtgggaaaacc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631489 aggtctgagggcggatgaacggaccccgcggaagctgaggctcctgctggtgggaaaacc 6631430
Query: 502 cggaagtgggaaaagcgcaacaggaaacagcatcctcggccggaagctgttcaagtgcaa 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631429 cggaagtgggaaaagcgcaacaggaaacagcatcctcggccggaagctgttcaagtgcaa 6631370
Query: 562 gctcagttccagaccggtgacccaggacttccagcgggggtgtcgggtgtgggctgggag 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631369 gctcagttccagaccggtgacccaggacttccagcgggggtgtcgggtgtgggctgggag 6631310
Query: 622 ggagctcgaggtcatagacacccccgacatcctgtcccctcgggcggcgccgggcgtggc 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631309 ggagctcgaggtcatagacacccccgacatcctgtcccctcgggcggcgccgggcgtggc 6631250
Query: 682 cgcccagggcttcagccgagccattgccttctccttccccgggccccacgccgtcctcct 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631249 cgcccagggcttcagccgagccattgccttctccttccccgggccccacgccgtcctcct 6631190
Query: 742 ggtgacacagctgggccgcttcacgcaggaggatcaagaggtggtcaggcgcctccagga 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631189 ggtgacacagctgggccgcttcacgcaggaggatcaagaggtggtcaggcgcctccagga 6631130
Query: 802 ggtgtttggggtgggcgtcctggcccacaccatcctggtgttcacacggaaggaagacct 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631129 ggtgtttggggtgggcgtcctggcccacaccatcctggtgttcacacggaaggaagacct 6631070
Query: 862 ggggggcggctccctggaagagtacctgcgagagacggacaaccgggagctggcccagct 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631069 ggggggcggctccctggaagagtacctgcgagagacggacaaccgggagctggcccagct 6631010
Query: 922 ggacgtgatctgtgagcggcgccactgcggcttcaacaacaaggtggagggggcggagca 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631009 ggacgtgatctgtgagcggcgccactgcggcttcaacaacaaggtggagggggcggagca 6630950
Query: 982 ggaagcccagctggaggagctcatgcagcaaatcgaaagcatcctgtgggaaaacgaggg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630949 ggaagcccagctggaggagctcatgcagcaaatcgaaagcatcctgtgggaaaacgaggg 6630890
Query: 1042 acattattacagcaaccaggcttgccattactccccgtggaatgtgctgctccagcaagc 1101
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6630889 ccattattacagcaactaggcttgccattactccccgtggaacgtgctgctccagcaagc 6630830
Query: 1102 gggcgaggggcagctccaccaggggtggggctgcgaggcaggactcagccaggagtcctg 1161
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 6630829 gggcgaggggcagctccaccaggggtggggctgcgaggcagggctcagccaggagtcctg 6630770
Query: 1162 gctgtagacactctgcagatccaggagacttgagggagctcacacacagctcctaagagg 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630769 gctgtagacactctgcagatccaggagacttgagggagctcacacacagctcctaagagg 6630710
Query: 1222 cacccatttgagatgcgctggctttcagtgcttcccaccagcctccctccaactgagtcc 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630709 cacccatttgagatgcgctggctttcagtgcttcccaccagcctccctccaactgagtcc 6630650
Query: 1282 cacttccaagctctcacctgctctcgccagctcacgggccactgcccatgccaggctccg 1341
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630649 cacttccaagccctcacctgctctcgccagctcacgggccactgcccatgccaggctccg 6630590
Query: 1342 gagttcccaggcccatcatcccctcttccagaacaccctccctcctctgtgcctcgccat 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630589 gagttcccaggcccatcatcccctcttccagaacaccctccctcctctgtgcctcgccat 6630530
Query: 1402 cctcaggctttccaggcctctagtagaacacacgtagagcaaaagcttcctgagggcagg 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630529 cctcaggctttccaggcctctagtagaacacacgtagagcaaaagcttcctgagggcagg 6630470
Query: 1462 cctgtgcctcattctcccatgtaaccc 1488
|||||||||||||||||||||||||||
Sbjct: 6630469 cctgtgcctcattctcccatgtaaccc 6630443
Score = 605 bits (305), Expect = e-170
Identities = 335/350 (95%)
Strand = Plus / Minus
Query: 9 cctgttggggttcccaaggcagcagccaacaaaatgcagagggcagagctgtgtgcctcc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635927 cctgttggggttcccaaggcagcagccaacaaaatgcagagggcagagctgtgtgcctcc 6635868
Query: 69 cagccgggcctggcctgcctgttcccgccccttcctgcacccgccccatgcacggctggg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635867 cagccgggcctggcctgcctgttcccgccccttcctgcacccgccccatgcacggctggg 6635808
Query: 129 ctttcaacggcagttcttgagctgagctttgggatcacattttgctnnnnnnnntataaa 188
|||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 6635807 ctttcaacggcagttcttgagctgagctttgggatcacattttgctaaaaaaaatataaa 6635748
Query: 189 cgatgtcctatatctattcaaacttctgggacattttattctaccctttccactcaaggn 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635747 cgatgtcctatatctattcaaacttctgggacattttattctaccctttccactcaaggc 6635688
Query: 249 nnnnnnaggcctgcaaggtgtccgctctgaaaggagaaacaaagaattcacgagacaacc 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635687 ccccccaggcctgcaaggtgtccgctctgaaaggagaaacaaagaattcacgagacaacc 6635628
Query: 309 tggccccaggagacgcaaaacgcagccttttcttctgcccaacaggaggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635627 tggccccaggagacgcaaaacgcagccttttcttctgcccaacaggaggg 6635578
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 358 gacagaggaagaagaatgcgaactgattgtccaggagaatttcaaagaagggctgtctca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634155 gacagaggaagaagaatgcgaactgattgtccaggagaatttcaaagaagggctgtctca 6634096
Query: 418 ggagcccacccaagacagatcaggaggt 445
||||||||||||||||||||||||||||
Sbjct: 6634095 ggagcccacccaagacagatcaggaggt 6634068
Score = 73.8 bits (37), Expect = 2e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 718 ccccgggccccacgccgtcctcctggtgacacagctgggccgcttcacg 766
|||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 6874295 ccccgggccccacgccctgctcctggtgacccagctgggccgcttcacg 6874343
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,367,389
Number of extensions: 359
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 5
Length of query: 1488
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1467
Effective length of database: 2,808,413,156
Effective search space: 4119942099852
Effective search space used: 4119942099852
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)