Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093182.1| GTPase IMAP family member 6 [Bos taurus]. 286 3e-77
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 171 1e-42
Alignment gi|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like... 171 1e-42
Alignment gi|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like... 171 1e-42
Alignment gi|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like... 171 1e-42
Alignment gi|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like is... 171 1e-42
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 171 1e-42
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 170 3e-42
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 169 4e-42
Alignment gi|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus]. 168 9e-42
>ref|NP_001093182.1| GTPase IMAP family member 6 [Bos taurus].
Length = 341
Score = 286 bits (732), Expect = 3e-77
Identities = 166/321 (51%), Positives = 199/321 (61%), Gaps = 8/321 (2%)
Frame = +1
Query: 76 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDDLAPGDTKR--SLXXXXXXXXX 249
MS ++ W + HS AC V AL G+T++S + APGDT+ S
Sbjct: 1 MSSMFVYVWGTVTDLLHS----ACSVLALNGDTESSGEHTAPGDTRHGHSSCPTDSRAME 56
Query: 250 XXXXXLIVQENFKEGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGR 429
+++ E +EG SQ+P+ DRSGG DE T + L L+LVGK GSGKSATGNSILGR
Sbjct: 57 EEEFEILLPEEPEEGTSQDPSPDRSGGFLGDEGTLQTLWLILVGKSGSGKSATGNSILGR 116
Query: 430 KLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPG 609
++F+ KLS+RPVTQ FQ+GCR W GREL+VIDTPDILSP A AQG A S P
Sbjct: 117 RVFESKLSARPVTQAFQQGCRAWEGRELQVIDTPDILSPWAAGWATAQGVGEAGTGSLPK 176
Query: 610 PHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN 789
+AVLLVTQLGRFT+EDQ+V RL+EVFG G+LA TILVFTRKEDL G SLE YLRETDN
Sbjct: 177 QYAVLLVTQLGRFTEEDQQVAGRLEEVFGKGILARTILVFTRKEDLDGRSLETYLRETDN 236
Query: 790 RELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQAC---HYS 960
R LA+LD +C RRHCGFNNK +L E EG YS A H +
Sbjct: 237 RALAKLDDVCSRRHCGFNNKGDGAEQETQLRELMRHVEGVLKEPEGCAYSPPATPQPHAA 296
Query: 961 P---WNVLLQQAGEGQLHQGW 1014
P W + A EG+ Q W
Sbjct: 297 PRESWGLWWLGAKEGRGDQAW 317
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 171 bits (434), Expect = 1e-42
Identities = 95/243 (39%), Positives = 134/243 (55%), Gaps = 2/243 (0%)
Frame = +1
Query: 271 VQENFKEGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKC 444
+ N EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+
Sbjct: 10 IYHNKMEGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFES 69
Query: 445 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVL 624
KL ++ VT+ QR +W GR + V+DTP I + S PGPH +L
Sbjct: 70 KLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLL 129
Query: 625 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 804
LVTQLGRFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +
Sbjct: 130 LVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRR 189
Query: 805 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 984
L C RR+C FNN+ + E++G + +N+ +S +LLQ
Sbjct: 190 LVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQM 247
Query: 985 AGE 993
G+
Sbjct: 248 GGD 250
>ref|XP_002687087.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 310
Score = 171 bits (434), Expect = 1e-42
Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 355 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 534
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 38 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 97
Query: 535 ILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 705
+ SP VA PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 98 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 155
Query: 706 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 156 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 203
>ref|XP_002687086.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 298
Score = 171 bits (434), Expect = 1e-42
Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 355 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 534
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 535 ILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 705
+ SP VA PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 706 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
>ref|XP_001252736.2| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 310
Score = 171 bits (434), Expect = 1e-42
Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 355 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 534
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 38 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 97
Query: 535 ILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 705
+ SP VA PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 98 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 155
Query: 706 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 156 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 203
>ref|XP_872704.2| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 298
Score = 171 bits (434), Expect = 1e-42
Identities = 89/168 (52%), Positives = 117/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 355 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 534
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 535 ILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 705
+ SP VA PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 706 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
AH ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AAHAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 171 bits (433), Expect = 1e-42
Identities = 95/243 (39%), Positives = 134/243 (55%), Gaps = 2/243 (0%)
Frame = +1
Query: 271 VQENFKEGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKC 444
+ N EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+
Sbjct: 10 IYHNKMEGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFES 69
Query: 445 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVL 624
KL ++ VT+ QR +W GR + V+DTP I + S PGPH +L
Sbjct: 70 KLGAQAVTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLL 129
Query: 625 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 804
LVTQLGRFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +
Sbjct: 130 LVTQLGRFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRR 189
Query: 805 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 984
L C RR+C FNN+ + E++G + +N+ +S +LLQ
Sbjct: 190 LVRECGRRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQM 247
Query: 985 AGE 993
G+
Sbjct: 248 GGD 250
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 170 bits (430), Expect = 3e-42
Identities = 94/237 (39%), Positives = 132/237 (55%), Gaps = 2/237 (0%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP 462
EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+ KL ++
Sbjct: 2 EGLQQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQA 61
Query: 463 VTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLG 642
VT+ QR +W GR + V+DTP I + S PGPH +LLVTQLG
Sbjct: 62 VTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLG 121
Query: 643 RFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICE 822
RFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +L C
Sbjct: 122 RFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECG 181
Query: 823 RRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGE 993
RR+C FNN+ + E++G + +N+ +S +LLQ G+
Sbjct: 182 RRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQMGGD 236
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 169 bits (429), Expect = 4e-42
Identities = 94/237 (39%), Positives = 132/237 (55%), Gaps = 2/237 (0%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADERTPRK--LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP 462
EGL Q + G + P LR++LVGK GSG+SATGNSIL + +F+ KL ++
Sbjct: 2 EGLRQGGGDSCTTGGGGESLNPESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQA 61
Query: 463 VTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLG 642
VT+ QR +W GR + V+DTP I + S PGPH +LLVTQLG
Sbjct: 62 VTRKCQRATGMWNGRSIVVVDTPPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLG 121
Query: 643 RFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICE 822
RFT++D V R++EVFG G + +++FT KEDLGGGSL+EY+ TDN L +L C
Sbjct: 122 RFTEQDVVAVTRVKEVFGAGAERYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECG 181
Query: 823 RRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGE 993
RR+C FNN+ + E++G + +N+ +S +LLQ G+
Sbjct: 182 RRYCAFNNRALGDEQREQLAQLMAVIEGLEQEHQGVFLTNEL--FSDAQMLLQMGGD 236
>ref|NP_001077146.1| GTPase, IMAP family member 1 [Bos taurus].
Length = 294
Score = 168 bits (426), Expect = 9e-42
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +1
Query: 355 RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPD 534
R+LRLLL G+ G+GKSATGNSIL RK F +L++ VT+ G WA ++EV+DTPD
Sbjct: 26 RRLRLLLAGRSGTGKSATGNSILQRKHFLSRLATTAVTRACATGSCCWASWDVEVLDTPD 85
Query: 535 ILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGV 705
+ SP VA PG +G R S PGPHAVLLVTQLGRFT +D + R ++ +FG G+
Sbjct: 86 LFSPEVAQADPGFKERG--RCYLLSAPGPHAVLLVTQLGRFTAQDLQAWRGVKALFGAGI 143
Query: 706 LAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
A ++VFTR+EDL GGSL++Y+R+TDNR L +L C R C F+N+
Sbjct: 144 AARAVVVFTRREDLDGGSLQQYVRDTDNRALRELVAECGGRCCAFDNR 191
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,896,490
Number of extensions: 1432457
Number of successful extensions: 7064
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 6956
Number of HSP's successfully gapped: 26
Length of query: 453
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,174,046
Effective search space: 4918393962
Effective search space used: 4918393962
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 279 5e-75
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 167 3e-41
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 166 5e-41
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 147 2e-35
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 147 2e-35
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 122 1e-27
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 107 1e-24
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 279 bits (713), Expect = 5e-75
Identities = 149/256 (58%), Positives = 177/256 (69%), Gaps = 2/256 (0%)
Frame = +1
Query: 76 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDDLAPGDT--KRSLXXXXXXXXX 249
MS+IYS D + SR + SA KGETKNS++ +APGD + S
Sbjct: 1 MSFIYSYTVDTFLHLLQSRSSKVHNASAPKGETKNSQEHVAPGDREHRHSSCPAADSVPE 60
Query: 250 XXXXXLIVQENFKEGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGR 429
I++E+ L+ +P GGL RTP+KLRLLLVGK GSGKSATGNSILGR
Sbjct: 61 EEEWEHILEEDPAGELNLDPRPGILGGLWEAPRTPQKLRLLLVGKSGSGKSATGNSILGR 120
Query: 430 KLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPG 609
+ F +LS +PVT+D QRG WAGRELEVIDTPD+LSP+ P AA+ A+AFS PG
Sbjct: 121 REFPSRLSPQPVTRDLQRGSGAWAGRELEVIDTPDLLSPQAGPEAAARAICEAVAFSAPG 180
Query: 610 PHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN 789
PHAVLLVTQLGRFT+ED++ VR LQE FGVGVLAHT+LVFTR+EDLGGGSLEEY+R TDN
Sbjct: 181 PHAVLLVTQLGRFTEEDRQAVRGLQEAFGVGVLAHTVLVFTRREDLGGGSLEEYVRRTDN 240
Query: 790 RELAQLDVICERRHCG 837
A LD +C RRHCG
Sbjct: 241 LHPALLDAVCARRHCG 256
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 167 bits (422), Expect = 3e-41
Identities = 92/190 (48%), Positives = 121/190 (63%), Gaps = 9/190 (4%)
Frame = +1
Query: 307 PTQDRSGGL------RADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 468
P D+S GL + + P +L L+LVG+ G+GKSATGNSILG + F +L++ PVT
Sbjct: 66 PLSDQSEGLGTARVQKQKPKAPPRLGLILVGRTGAGKSATGNSILGHRSFPSRLAAAPVT 125
Query: 469 QDFQRGCRVWAGRELEVIDTPDILSP---RVAPGVAAQGFSRAIAFSFPGPHAVLLVTQL 639
+ G R WAG +EV DTPD+ S R G A +G R S PGPHA+LLVTQL
Sbjct: 126 RTCALGSRRWAGWRVEVTDTPDLFSAEGRRADRGCAERG--RCYLLSAPGPHALLLVTQL 183
Query: 640 GRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVIC 819
GRFT +D++ VR ++E+FG GVLA ++VFTR+EDL G S +Y+R TDNR L L C
Sbjct: 184 GRFTAQDEQAVRGVRELFGPGVLARAVVVFTRREDLAGASPHDYVRATDNRALRALVAEC 243
Query: 820 ERRHCGFNNK 849
R C +N+
Sbjct: 244 GGRVCALDNR 253
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 166 bits (420), Expect = 5e-41
Identities = 89/216 (41%), Positives = 120/216 (55%)
Frame = +1
Query: 349 TPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDT 528
TP LR++LVGK GSG+SATGNSIL + +F+ +L ++PVT+ Q W GR + V+DT
Sbjct: 296 TPPSLRIILVGKTGSGRSATGNSILCQPVFESRLGNQPVTKTCQGETGTWNGRSILVVDT 355
Query: 529 PDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVL 708
P + + S PGPH +LLVT LGRFT +D VRR++EVFG G +
Sbjct: 356 PSLFEAEAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAM 415
Query: 709 AHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXX 888
H +++FT KEDL G SL++YL +TDN L L C RR+C FNN+
Sbjct: 416 RHAVVLFTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARL 475
Query: 889 XXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEG 996
+ E G +YSN + LLQ+ G G
Sbjct: 476 MAVVERLERETGGAFYSNDLFFQAQ---LLQRGGGG 508
Score = 164 bits (414), Expect = 2e-40
Identities = 83/195 (42%), Positives = 118/195 (60%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
KLR++LVGK G+GKSATGNSIL ++ F+ +L+++P T+ W RE+ +IDTPD+
Sbjct: 22 KLRIILVGKTGTGKSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGEREMVIIDTPDM 81
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
S R + R S PGPH +LLVTQLGRFT +DQ+VV+R++E+FG V+ HT
Sbjct: 82 FSERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDVMRHT 141
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 897
I++FT KEDL G SL +Y+ + DN+ L +L C R C F+N
Sbjct: 142 IVLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDNHATGSDRDDQVKELMAL 201
Query: 898 XXSILWENEGHYYSN 942
++ E G +Y+N
Sbjct: 202 MEDLVLERRGEHYTN 216
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 147 bits (372), Expect = 2e-35
Identities = 77/206 (37%), Positives = 122/206 (59%)
Frame = +1
Query: 328 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 507
GL + + +LRL+LVGK G+GKSATGNSILG K+F ++++ VT+ ++G W GR
Sbjct: 21 GLGSQDCRDSQLRLVLVGKTGAGKSATGNSILGEKVFHSSIAAKSVTKVCKKGSSRWHGR 80
Query: 508 ELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 687
EL V+DTP I V + + I + PGPHA+LLV LGR+TQE+++ + ++ +
Sbjct: 81 ELIVVDTPGIFDTEVQDADTCREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQ 140
Query: 688 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 867
+FG + IL+FTRK+DL G ++YL++ + ++ +L + R+C FNN+
Sbjct: 141 MFGPRARRYMILLFTRKDDLDGMHFQDYLKDA-SEDIQELVDMFRDRYCVFNNRATGTEQ 199
Query: 868 XXXXXXXXXXXXSILWENEGHYYSNQ 945
++ ENEG Y+N+
Sbjct: 200 EAQRMQLLTLVQRVVMENEGGCYTNK 225
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 147 bits (371), Expect = 2e-35
Identities = 74/194 (38%), Positives = 115/194 (59%)
Frame = +1
Query: 361 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDIL 540
LR++LVGK GSGKSAT N+ILGR++F ++++ +T++ Q+ R W GR+L V+DTP +
Sbjct: 9 LRIVLVGKTGSGKSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLLVVDTPGLF 68
Query: 541 SPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTI 720
+ + SR + S PGPHA+LLV QLGR+T+E+Q+ V ++ VFG L H I
Sbjct: 69 DTKETLDTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFGKPALKHMI 128
Query: 721 LVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXX 900
++FTRK++L SL +++ D + L + C R+C FNN+
Sbjct: 129 MLFTRKDNLEDQSLSDFIESADVK-LKNITKECGDRYCAFNNRAKEAEKEAQVQELVELI 187
Query: 901 XSILWENEGHYYSN 942
++ N G Y+S+
Sbjct: 188 EQMVQSNGGAYFSD 201
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 122 bits (305), Expect = 1e-27
Identities = 77/199 (38%), Positives = 117/199 (58%), Gaps = 7/199 (3%)
Frame = +1
Query: 277 ENFKEGLSQEPTQDRSGGLRADERTP-------RKLRLLLVGKPGSGKSATGNSILGRKL 435
++ K SQ+ + GG + T +L++LLVGK G+GKSA GNS+LG+++
Sbjct: 273 DSVKGAASQKEDKPHGGGELQRQATGYEPNPGIHELKVLLVGKRGAGKSAAGNSLLGKRV 332
Query: 436 FKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPH 615
F+ K S VT+ F R+W R + +IDTPDI S + + A+ R + F GPH
Sbjct: 333 FETKFSEESVTRRFVLESRIWRERRVVIIDTPDISSSK---DIKAE-LRRHV---FGGPH 385
Query: 616 AVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRE 795
A LLVT LG F+++D+ V+ LQ FG + + I++FTRKEDLG LE +L+ + +
Sbjct: 386 AFLLVTPLGSFSKKDEVVLDTLQASFGDKFVEYLIILFTRKEDLGDQDLEMFLK-SRSTA 444
Query: 796 LAQLDVICERRHCGFNNKV 852
L +L C+ R+C F+ +V
Sbjct: 445 LCKLIKKCKDRYCVFSYRV 463
Score = 121 bits (304), Expect = 1e-27
Identities = 76/196 (38%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Frame = +1
Query: 280 NFKEGLSQEPTQDRSGGLRADERTPR------KLRLLLVGKPGSGKSATGNSILGRKLFK 441
N + L R+ ER P +LRLLL+G+ G GKSATGN+ILGR +F
Sbjct: 39 NLRTTLGAAAADSRTDESLGQEREPEPGCSRPELRLLLLGRSGVGKSATGNTILGRSMFV 98
Query: 442 CKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAV 621
K S++ VT+ QR R L VIDTP + S + R + P H +
Sbjct: 99 SKFSNQMVTKVCQRESRATGEGTLVVIDTPYLFSSMSPAEDKQRNIERCLELCAPSLHVL 158
Query: 622 LLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELA 801
LLV +G + ED+EVV +QEVFG + I+VFTRK+DL G S+++Y+ D+ L
Sbjct: 159 LLVIAIGCYELEDKEVVCGVQEVFGAEARRYMIVVFTRKDDLEGDSVQDYIEGLDS--LR 216
Query: 802 QLDVICERRHCGFNNK 849
+L C R+C NNK
Sbjct: 217 ELVENCGGRYCALNNK 232
Score = 118 bits (295), Expect = 2e-26
Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 2/170 (1%)
Frame = +1
Query: 346 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 525
R L L+LVGK G GKSATGN+ILGR F + ++PVT+ Q R+W +E+ V+D
Sbjct: 494 REQEPLSLVLVGKSGPGKSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWGQQEVVVVD 553
Query: 526 TPDILSPRVAPGVAAQ--GFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGV 699
P + A G +Q R G ++LV QLG FTQED+ V+ L+ +FG
Sbjct: 554 MPSLCLMASAEGGPSQLEEEVRRCWSCCKGNKILVLVFQLGWFTQEDKRAVKELETIFGE 613
Query: 700 GVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
VL +TI++FTRKEDL + +Y++ +NR L + C R C FNNK
Sbjct: 614 EVLKYTIVLFTRKEDL-EVDIADYIKNAENRTLQNIIKRCGGRICAFNNK 662
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 107 bits (267), Expect(2) = 1e-24
Identities = 57/133 (42%), Positives = 74/133 (55%)
Frame = +1
Query: 598 SFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLR 777
S PGPH +LLVT LGRFT +D VRR++EVFG G + H +++FT KEDL G SL++YL
Sbjct: 123 SAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLAGESLDDYLA 182
Query: 778 ETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHY 957
+TDN L L C RR+C FNN+ + E G +YSN
Sbjct: 183 DTDNHSLRSLVQECGRRYCAFNNRATGEEQREQLARLMAVVERLERETGGAFYSNDLFFQ 242
Query: 958 SPWNVLLQQAGEG 996
+ LLQ+ G G
Sbjct: 243 AQ---LLQRGGGG 252
Score = 25.4 bits (54), Expect(2) = 1e-24
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 411 KQHPRPEAVQVQAQFQTGDPGLPAGVSGVGWEGARGHRH 527
+QHP P V VQA D +P G + + G RH
Sbjct: 68 EQHPLPAGVPVQAGEPACDQNVPGGDRDLERKEHPGGRH 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,092,224
Number of extensions: 1482034
Number of successful extensions: 7153
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7042
Number of HSP's successfully gapped: 11
Length of query: 453
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 347
Effective length of database: 15,340,888
Effective search space: 5323288136
Effective search space used: 5323288136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 308 1e-83
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 165 1e-40
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 164 1e-40
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 163 4e-40
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 162 5e-40
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 142 7e-34
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 140 2e-33
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 138 1e-32
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 308 bits (788), Expect = 1e-83
Identities = 169/280 (60%), Positives = 200/280 (71%), Gaps = 2/280 (0%)
Frame = +1
Query: 268 IVQENFKEGLSQEPTQDRSGGLRADE-RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKC 444
I QEN E LSQ+P + SGGLR E +TPR+LRL+L+GK GSGKSATGNSILGR +F+
Sbjct: 9 IPQENPPEELSQDPVLELSGGLREKEQKTPRRLRLILMGKTGSGKSATGNSILGRDVFES 68
Query: 445 KLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVL 624
KLS+RPVT+ QR R WAG+ELEVIDTP+ILSP+V+P VA +AI S PGPHAVL
Sbjct: 69 KLSTRPVTKTSQRRSREWAGKELEVIDTPNILSPQVSPEVA-DAICQAIVLSAPGPHAVL 127
Query: 625 LVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQ 804
LVTQLGRFT EDQ+VVRRLQEVFGVGVL HTILVFTRKEDL GGSLE+Y+RET+N+ LA
Sbjct: 128 LVTQLGRFTDEDQQVVRRLQEVFGVGVLGHTILVFTRKEDLAGGSLEDYVRETNNQALAW 187
Query: 805 LDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQ 984
LDV RRHCGFNN+ +I+WENEG YYSN+A Y+ N L++
Sbjct: 188 LDVTLARRHCGFNNRAQGEEQEAQLRELMEKVEAIMWENEGDYYSNKAYQYTQQNFRLKE 247
Query: 985 AGEGQLHQGWGCEAGLSQESWL*TLCR-SRRLEGAHTQLL 1101
E Q+ QG G E +ESWL L + + E AH LL
Sbjct: 248 LQERQVSQGQGSEDVPGEESWLEGLSQIQKESEEAHRCLL 287
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 165 bits (417), Expect = 1e-40
Identities = 90/206 (43%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Frame = +1
Query: 337 ADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELE 516
A R RL+LVG+ G+GKSATGNSILG++ F +L + VT+ G R W +E
Sbjct: 20 AQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVE 79
Query: 517 VIDTPDILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 687
V+DTPDI S +V+ PG +G S PGPHA+LLVTQLGRFT +DQ+ VR++++
Sbjct: 80 VVDTPDIFSSQVSKTDPGCEERG--HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRD 137
Query: 688 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 867
+FG VL ++VFTRKEDL GGSL +Y+ T+NR L +L C R C F+N+
Sbjct: 138 MFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQ 197
Query: 868 XXXXXXXXXXXXSILWENEGHYYSNQ 945
++ E++G +YSN+
Sbjct: 198 EAQVEQLLGMVEGLVLEHKGAHYSNE 223
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 164 bits (416), Expect = 1e-40
Identities = 95/256 (37%), Positives = 135/256 (52%), Gaps = 14/256 (5%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADE--------------RTPRKLRLLLVGKPGSGKSATGNSILG 426
E +Q+P +R GG + + TP LR++LVGK G GKSATGNSILG
Sbjct: 194 EDRAQQPFLERMGGFQRGKYGTMAEGRSEDNLSATPPALRIILVGKTGCGKSATGNSILG 253
Query: 427 RKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFP 606
+ +F+ KL ++ VT+ Q W GR++ V+DTP I + + S P
Sbjct: 254 QPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIFESQADTQELYKNIGDCYLLSAP 313
Query: 607 GPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETD 786
GPH +LLV QLGRFT +D +R+++EVFG G + H +++FT KEDLGG +L++Y+ TD
Sbjct: 314 GPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVVILFTHKEDLGGQALDDYVANTD 373
Query: 787 NRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPW 966
N L L CERR+C FNN + E EG ++SN +
Sbjct: 374 NCSLKDLVRECERRYCAFNNWGSVEEQRQQQAELLAVIERLGREREGSFHSNDLFLDAQ- 432
Query: 967 NVLLQQAGEGQLHQGW 1014
LLQ+ G G + +
Sbjct: 433 --LLQRTGAGACQEDY 446
Score = 105 bits (262), Expect = 1e-22
Identities = 59/118 (50%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Frame = +1
Query: 337 ADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELE 516
A R RL+LVG+ G+GKSATGNSILG++ F +L + VT+ G R W +E
Sbjct: 20 AQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVE 79
Query: 517 VIDTPDILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRL 681
V+DTPDI S +V+ PG +G S PGPHA+LLVTQLGRFT +DQ+ VR+L
Sbjct: 80 VVDTPDIFSSQVSKTDPGCEERG--HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQL 135
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 163 bits (412), Expect = 4e-40
Identities = 80/195 (41%), Positives = 118/195 (60%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
+LR++LVGK G+GKSA GNSIL ++ F+ KL S+ +T+ + W RE+ +IDTPD+
Sbjct: 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDM 81
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
S + + R S PGPH +LLVTQLGR+T +DQ+ +R++E+FG + HT
Sbjct: 82 FSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHT 141
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 897
I++FT KEDL GGSL +Y+ ++DN+ L++L C R C FNN+
Sbjct: 142 IVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDC 201
Query: 898 XXSILWENEGHYYSN 942
+L E G +Y+N
Sbjct: 202 IEDLLMEKNGDHYTN 216
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 162 bits (411), Expect = 5e-40
Identities = 89/222 (40%), Positives = 124/222 (55%)
Frame = +1
Query: 349 TPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDT 528
TP LR++LVGK G GKSATGNSILG+ +F+ KL ++ VT+ Q W GR++ V+DT
Sbjct: 24 TPPALRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDT 83
Query: 529 PDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVL 708
P I + + S PGPH +LLV QLGRFT +D +R+++EVFG G +
Sbjct: 84 PSIFESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAM 143
Query: 709 AHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXX 888
H +++FT KEDLGG +L++Y+ TDN L L CERR+C FNN
Sbjct: 144 RHVVILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVEEQRQQQAEL 203
Query: 889 XXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEGQLHQGW 1014
+ E EG ++SN + LLQ+ G G + +
Sbjct: 204 LAVIERLGREREGSFHSNDLFLDAQ---LLQRTGAGACQEDY 242
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 142 bits (358), Expect = 7e-34
Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Frame = +1
Query: 346 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 525
R L ++LVG+ G+GKSATGNSILG +F +L ++PVT+ Q G R W G+E+ V+D
Sbjct: 434 REKETLNIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVD 493
Query: 526 TPD---ILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 696
TP +L P + R ++ G +LV QLGRFT+ED+ V +L+ +FG
Sbjct: 494 TPSFNQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFG 553
Query: 697 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
+ I++FTRKEDLG G+LE++++ +DN+ L ++ C RR C FNNK
Sbjct: 554 ADFTKYAIMLFTRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNNK 604
Score = 130 bits (327), Expect = 3e-30
Identities = 73/164 (44%), Positives = 101/164 (61%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
+LRLLL+GK SGKSATGN+ILG+ +FK K S + V + QR V R++ VIDTPD+
Sbjct: 10 ELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPDL 69
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
S + + S P HA+LLV +G FT+ED+E + +Q+VFG H
Sbjct: 70 FSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRHI 129
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
I+VFTRK+DLG L++++ + N+ L QL E R+C FNNK
Sbjct: 130 IIVFTRKDDLGDDLLQDFIEK--NKPLKQLVQDYEGRYCIFNNK 171
Score = 113 bits (283), Expect = 4e-25
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 2/188 (1%)
Frame = +1
Query: 286 KEGLSQEPTQDRSGGLRADERTP--RKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSR 459
+EG + ++R E+ P +L +LLVGK G+GKSA GNSILGR+ F+ S +
Sbjct: 221 QEGDKPQGPRERQLQSTGPEQNPGTSELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQ 280
Query: 460 PVTQDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQL 639
VTQ F R W +++ +ID PDI S + S GPHA LLVT L
Sbjct: 281 SVTQSFLSESRSWRKKKVSIIDAPDISSLKNID-------SEVRKHICTGPHAFLLVTPL 333
Query: 640 GRFTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVIC 819
G +T+ D+ V+ +Q FG + I++ TRKEDLG L+ +LR + N+ L L C
Sbjct: 334 GFYTKNDEAVLSTIQNNFGEKFFEYMIILLTRKEDLGDQDLDTFLRNS-NKALYGLIQKC 392
Query: 820 ERRHCGFN 843
+ R+ FN
Sbjct: 393 KNRYSAFN 400
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 140 bits (354), Expect = 2e-33
Identities = 75/202 (37%), Positives = 117/202 (57%), Gaps = 2/202 (0%)
Frame = +1
Query: 343 ERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVI 522
E R LR++LVGK GSGKSAT N+ILG ++F +++++ VT++ Q+ R W GR+L V+
Sbjct: 3 ESEDRSLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLLVV 62
Query: 523 DTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVG 702
DTP + + + + SR I S PGPHA++LV LGR+T+E+Q+ V ++ VFG
Sbjct: 63 DTPGLFDTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFGKS 122
Query: 703 VLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNN--KVXXXXXXXX 876
+ H +++FTRKE+L G S +++ + D L + C R C F+N K
Sbjct: 123 AMKHMVILFTRKEELEGQSFHDFIADAD-VGLKSIVKECGNRCCAFSNSKKTSKAEKESQ 181
Query: 877 XXXXXXXXXSILWENEGHYYSN 942
++ NEG Y+S+
Sbjct: 182 VQELVELIEKMVQCNEGAYFSD 203
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 138 bits (347), Expect = 1e-32
Identities = 80/233 (34%), Positives = 122/233 (52%)
Frame = +1
Query: 310 TQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGC 489
T S G E +LR++LVGK G+GKSATGNSILGRK+F +++ +T+ ++
Sbjct: 14 TPGASYGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRS 73
Query: 490 RVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEV 669
W EL V+DTP I V ++ R I + PGPHA+LLV LGR+T+E+ +
Sbjct: 74 SSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKA 133
Query: 670 VRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
++ ++FG + IL+FTRK+DLG +L +YLRE ++ L I R+C NNK
Sbjct: 134 TEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAP-EDIQDLMDIFGDRYCALNNK 192
Query: 850 VXXXXXXXXXXXXXXXXXSILWENEGHYYSNQACHYSPWNVLLQQAGEGQLHQ 1008
++ EN+ Y+N+ + + Q +LH+
Sbjct: 193 ATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQELHR 245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,877,903
Number of extensions: 1439830
Number of successful extensions: 6579
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6466
Number of HSP's successfully gapped: 11
Length of query: 453
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 347
Effective length of database: 14,802,980
Effective search space: 5136634060
Effective search space used: 5136634060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 232 4e-61
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 171 1e-42
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 162 6e-40
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 160 2e-39
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 137 2e-32
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 135 1e-31
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 125 1e-28
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 123 3e-28
Alignment gi|NP_997651.1| GTPase IMAP family member 8 [Mus musculus]. 123 3e-28
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 232 bits (592), Expect = 4e-61
Identities = 121/209 (57%), Positives = 147/209 (70%)
Frame = +1
Query: 313 QDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCR 492
Q + GL+ + TP++L+LLLVGK GSGKSATGNSILGR+ F+ K+S+RPVT FQ+G R
Sbjct: 88 QGLTKGLKEKKLTPKRLQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTR 147
Query: 493 VWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 672
+ G+ELEVIDTPDI SP+ P A+ +A PGPHAVLLV Q+GR+T EDQ V
Sbjct: 148 EFEGKELEVIDTPDIFSPQNQPEATAKKICDLLAS--PGPHAVLLVIQVGRYTAEDQAVA 205
Query: 673 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 852
R LQE+FG +LA+TILVFTRKEDL GSLEEY++E +N+ L LDV CERRHCGFNNK
Sbjct: 206 RCLQEIFGNTILAYTILVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKA 265
Query: 853 XXXXXXXXXXXXXXXXXSILWENEGHYYS 939
ILWENEGH Y+
Sbjct: 266 QGDEQEAQLKKLMEEVELILWENEGHCYT 294
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 171 bits (433), Expect = 1e-42
Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Frame = +1
Query: 340 DERTPR--KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGREL 513
D R P+ +LRL+LVG+ G+GKSATGNSILG+K F +L + PVT+ R+WAG ++
Sbjct: 18 DSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQV 77
Query: 514 EVIDTPDILS---PRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQ 684
EV+DTPDI S PR PG +R S PGPHA+LLVTQLGRFT +D + + ++
Sbjct: 78 EVVDTPDIFSSEIPRTDPGCVET--ARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVK 135
Query: 685 EVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXX 864
+FG V+A T++VFTR+EDL G SL++Y+ TDNR L L C R C NN+
Sbjct: 136 RLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSE 195
Query: 865 XXXXXXXXXXXXXSILWENEGHYYSNQ 945
++ E+ G +YSN+
Sbjct: 196 REAQAEQLLGMVACLVREHGGAHYSNE 222
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 171 bits (433), Expect = 1e-42
Identities = 93/207 (44%), Positives = 127/207 (61%), Gaps = 5/207 (2%)
Frame = +1
Query: 340 DERTPR--KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGREL 513
D R P+ +LRL+LVG+ G+GKSATGNSILG+K F +L + PVT+ R+WAG ++
Sbjct: 18 DSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQV 77
Query: 514 EVIDTPDILS---PRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQ 684
EV+DTPDI S PR PG +R S PGPHA+LLVTQLGRFT +D + + ++
Sbjct: 78 EVVDTPDIFSSEIPRTDPGCVET--ARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVK 135
Query: 685 EVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXX 864
+FG V+A T++VFTR+EDL G SL++Y+ TDNR L L C R C NN+
Sbjct: 136 RLFGKQVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSE 195
Query: 865 XXXXXXXXXXXXXSILWENEGHYYSNQ 945
++ E+ G +YSN+
Sbjct: 196 REAQAEQLLGMVACLVREHGGAHYSNE 222
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 162 bits (410), Expect = 6e-40
Identities = 93/218 (42%), Positives = 118/218 (54%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 468
E L T + GG + R LR+LLVGK G GKSATGNS+L R F+ +L + VT
Sbjct: 2 ETLQNVVTGGKKGGCTSGSRP---LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVT 58
Query: 469 QDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 648
+ Q W GR + V+DTP I + + PGPH +LLVTQLGRF
Sbjct: 59 RTSQAETGTWEGRSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRF 118
Query: 649 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERR 828
T ED VR ++EVFGVGV+ H I++FTRKEDL SLEE++ TDNR L L C RR
Sbjct: 119 TAEDVMAVRMVKEVFGVGVMRHMIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRR 178
Query: 829 HCGFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSN 942
+C FNN+ + E EG ++SN
Sbjct: 179 YCAFNNRASGEEQQGQLAELMALVRRLEQECEGSFHSN 216
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 160 bits (406), Expect = 2e-39
Identities = 88/194 (45%), Positives = 110/194 (56%)
Frame = +1
Query: 361 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDIL 540
LR+LLVGK G GKSATGNSIL R F+ +L + VT+ Q W GR + V+DTP I
Sbjct: 27 LRILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDTPPIF 86
Query: 541 SPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHTI 720
+ + PGPH +LLVTQLGRFT ED VR ++EVFGVGV+ H I
Sbjct: 87 ESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVMRHMI 146
Query: 721 LVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXXX 900
++FTRKEDL SLEE++ TDNR L L C RR+C FNN+
Sbjct: 147 VLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNNRASGEEQQGQLAELMALV 206
Query: 901 XSILWENEGHYYSN 942
+ E EG ++SN
Sbjct: 207 RRLEQECEGSFHSN 220
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 137 bits (345), Expect = 2e-32
Identities = 76/200 (38%), Positives = 112/200 (56%)
Frame = +1
Query: 343 ERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVI 522
E + LR++LVGK GSGKSAT N+ILG+K F +++ VTQ+ Q R W R+L V+
Sbjct: 3 EPSDNSLRIVLVGKTGSGKSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLLVV 62
Query: 523 DTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVG 702
DTP + +V SR + S PGPHA++LV QL RFT E+QE V R++ +FG
Sbjct: 63 DTPGLFDTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFGEE 122
Query: 703 VLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXX 882
V+ + I++FTRK+DL SL +++ ++D L + C R NNK
Sbjct: 123 VMKYMIVLFTRKDDLEDQSLSDFIADSDT-NLKSIIKECGNRCLAINNKAERAERETQVQ 181
Query: 883 XXXXXXXSILWENEGHYYSN 942
+++ N G Y+S+
Sbjct: 182 ELMGLVETLVQNNGGLYFSH 201
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 135 bits (339), Expect = 1e-31
Identities = 69/196 (35%), Positives = 112/196 (57%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
++R++LVGK G+GKSAT N+ILGR+ F K+ + VT+ QR R W G+ L V+DTP +
Sbjct: 8 EVRIILVGKTGNGKSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLVVVDTPGL 67
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
+ SR + +S PGPHA++LV +L R+T+E+Q+ V ++ +FG L +
Sbjct: 68 FDTKETMKTTCFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFGEAALKYM 127
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 897
I++FT KEDL SL+ ++ + +L + C +R+ FNNK
Sbjct: 128 IILFTHKEDLEDQSLDNFVSDA-GEKLNNIISQCGKRYLAFNNKAALDEQENQVQQLIEL 186
Query: 898 XXSILWENEGHYYSNQ 945
++ +N G Y+S++
Sbjct: 187 TEKMVAQNGGSYFSDK 202
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 125 bits (313), Expect = 1e-28
Identities = 67/196 (34%), Positives = 110/196 (56%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
+LR++L+GK G+GKS+TGNSILG K+F + ++ +T+ ++ W G+EL V+DTP I
Sbjct: 30 QLRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGI 89
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
V + +R +A + PGPHA+LLV LGR+T E+ + +++ ++FG
Sbjct: 90 FDTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMFGKQARRFM 149
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 897
IL+ TRK+DL + EYL E + ++ + R+C FNN+
Sbjct: 150 ILLLTRKDDLEDTDIHEYL-EKAPKFFQEVMHEFQNRYCLFNNRASGAEKEEQKMQLLTL 208
Query: 898 XXSILWENEGHYYSNQ 945
S++ EN G ++N+
Sbjct: 209 VQSMVRENGGRCFTNK 224
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 123 bits (309), Expect = 3e-28
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +1
Query: 346 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 525
R L ++L+G+ G+GKSATGN+ILGR F +L ++PVT Q G R +++ V+D
Sbjct: 471 REKELLNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVD 530
Query: 526 TPDILSP---RVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 696
TP + P + ++ G +LV QLGRFTQED+ VV +L+ F
Sbjct: 531 TPSFIQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFE 590
Query: 697 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
++ + I++FTRKEDLG G L +Y T N+ L ++ C R C FNNK
Sbjct: 591 ENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNK 641
Score = 108 bits (269), Expect = 1e-23
Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 1/188 (0%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 468
+G +Q + G + ++ T LRLLL+GK G+GKSATGN+ILG+ +F+ K S VT
Sbjct: 26 QGERPSASQGQEGNFKQNQGTST-LRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVT 84
Query: 469 QDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 648
Q G+++ VIDTPD+ S V Q + + +LLVT +G +
Sbjct: 85 DRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHY 144
Query: 649 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN-RELAQLDVICER 825
T+ED+E + + G H I+VFTR+++L SL Y+ ++ +EL + I R
Sbjct: 145 TEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKESLKEL--IKNIGSR 202
Query: 826 RHCGFNNK 849
R C FNNK
Sbjct: 203 RCCTFNNK 210
Score = 107 bits (268), Expect = 2e-23
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP-VTQDFQRGCRVWAGRELEVIDTPD 534
+LR+LL+GK G GKSA GNSILG+++FK + S + VT+ F RVW G+++ +ID+P+
Sbjct: 284 ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPE 343
Query: 535 ILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAH 714
I S ++ +FPGPHA LLVT LG + D +V ++ +FG
Sbjct: 344 ISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKF 396
Query: 715 TILVFTRKEDLGGGSLEEYLRETD 786
TI++FTRKED +L++ ++E D
Sbjct: 397 TIVLFTRKEDFEDQALDKVIKEND 420
>ref|NP_997651.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 123 bits (309), Expect = 3e-28
Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 3/171 (1%)
Frame = +1
Query: 346 RTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVID 525
R L ++L+G+ G+GKSATGN+ILGR F +L ++PVT Q G R +++ V+D
Sbjct: 471 REKELLNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVD 530
Query: 526 TPDILSP---RVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFG 696
TP + P + ++ G +LV QLGRFTQED+ VV +L+ F
Sbjct: 531 TPSFIQTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFE 590
Query: 697 VGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNK 849
++ + I++FTRKEDLG G L +Y T N+ L ++ C R C FNNK
Sbjct: 591 ENIMKYMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNNK 641
Score = 108 bits (269), Expect = 1e-23
Identities = 68/188 (36%), Positives = 102/188 (54%), Gaps = 1/188 (0%)
Frame = +1
Query: 289 EGLSQEPTQDRSGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVT 468
+G +Q + G + ++ T LRLLL+GK G+GKSATGN+ILG+ +F+ K S VT
Sbjct: 26 QGERPSASQGQEGNFKQNQGTST-LRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVT 84
Query: 469 QDFQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRF 648
Q G+++ VIDTPD+ S V Q + + +LLVT +G +
Sbjct: 85 DRCQSESVSVRGKQVIVIDTPDLFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHY 144
Query: 649 TQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDN-RELAQLDVICER 825
T+ED+E + + G H I+VFTR+++L SL Y+ ++ +EL + I R
Sbjct: 145 TEEDRETIEGIWGKIGPKAYRHMIVVFTREDELDEDSLWNYIESKESLKEL--IKNIGSR 202
Query: 826 RHCGFNNK 849
R C FNNK
Sbjct: 203 RCCTFNNK 210
Score = 107 bits (268), Expect = 2e-23
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRP-VTQDFQRGCRVWAGRELEVIDTPD 534
+LR+LL+GK G GKSA GNSILG+++FK + S + VT+ F RVW G+++ +ID+P+
Sbjct: 284 ELRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPE 343
Query: 535 ILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAH 714
I S ++ +FPGPHA LLVT LG + D +V ++ +FG
Sbjct: 344 ISSWKLDESAVKN-------HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKF 396
Query: 715 TILVFTRKEDLGGGSLEEYLRETD 786
TI++FTRKED +L++ ++E D
Sbjct: 397 TIVLFTRKEDFEDQALDKVIKEND 420
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,433,187
Number of extensions: 1182032
Number of successful extensions: 5476
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5375
Number of HSP's successfully gapped: 17
Length of query: 453
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 348
Effective length of database: 12,463,779
Effective search space: 4337395092
Effective search space used: 4337395092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 372 e-103
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 174 1e-43
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 164 1e-40
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 163 2e-40
Alignment gi|XP_003360126.1| PREDICTED: GTPase IMAP family member 6-like ... 142 4e-34
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 118 9e-27
Alignment gi|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2... 59 8e-09
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 372 bits (956), Expect = e-103
Identities = 187/205 (91%), Positives = 187/205 (91%)
Frame = +1
Query: 328 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 507
GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR
Sbjct: 66 GLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGR 125
Query: 508 ELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 687
ELEVIDTPDILSPR APGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE
Sbjct: 126 ELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQE 185
Query: 688 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXX 867
VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV
Sbjct: 186 VFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVEGAEQ 245
Query: 868 XXXXXXXXXXXXSILWENEGHYYSN 942
SILWENEGHYYSN
Sbjct: 246 EAQLEELMQQIESILWENEGHYYSN 270
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 174 bits (441), Expect = 1e-43
Identities = 90/196 (45%), Positives = 125/196 (63%)
Frame = +1
Query: 358 KLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWAGRELEVIDTPDI 537
+LR++LVGK G+GKSATGNSILG+++F+ +LS++ +T+ W GRE+ VIDTPD+
Sbjct: 67 ELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPDM 126
Query: 538 LSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVVRRLQEVFGVGVLAHT 717
S R + R S PGPH +LLVTQLGRFT +D++VVRR++E+FG VL HT
Sbjct: 127 FSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHT 186
Query: 718 ILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKVXXXXXXXXXXXXXXX 897
I++FTRKEDL GGSL Y+ +DN+ L++L C R C FNN+
Sbjct: 187 IVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDL 246
Query: 898 XXSILWENEGHYYSNQ 945
S++ +G Y+NQ
Sbjct: 247 IESLVRAKKGDCYTNQ 262
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 164 bits (415), Expect = 1e-40
Identities = 103/245 (42%), Positives = 138/245 (56%), Gaps = 13/245 (5%)
Frame = +1
Query: 322 SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWA 501
S L+A + PR LRLLL G+ G+GKS+TGNSILGRK F +L + VT+ WA
Sbjct: 16 SEDLQAALQEPR-LRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWA 74
Query: 502 GRELEVIDTPDILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 672
+++V+DTPD+ S VA P +G R + PGPHA+LLVTQLGRFT +DQ+
Sbjct: 75 EWDVDVLDTPDLFSSEVARTDPDCKERG--RCYLLAAPGPHALLLVTQLGRFTAQDQQAW 132
Query: 673 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 852
R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL C R C FNN+
Sbjct: 133 RGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRA 192
Query: 853 XXXXXXXXXXXXXXXXXSILWENEGHYYSNQACH-------YSPWNVL---LQQAGEGQL 1002
++ + G Y+N H SP L +Q QL
Sbjct: 193 TGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQL 252
Query: 1003 HQGWG 1017
Q WG
Sbjct: 253 KQRWG 257
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 163 bits (412), Expect = 2e-40
Identities = 104/258 (40%), Positives = 143/258 (55%), Gaps = 16/258 (6%)
Frame = +1
Query: 322 SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQDFQRGCRVWA 501
S L+A + PR LRLLL G+ G+GKS+TGNSILGRK F +L + VT+ WA
Sbjct: 20 SEDLQAALQEPR-LRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWA 78
Query: 502 GRELEVIDTPDILSPRVA---PGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQEDQEVV 672
+++V+DTPD+ S VA P +G R + PGPHA+LLVTQLGRFT +DQ+
Sbjct: 79 EWDVDVLDTPDLFSSEVARTDPDCKERG--RCYLLAAPGPHALLLVTQLGRFTAQDQQAW 136
Query: 673 RRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHCGFNNKV 852
R ++ +FG GV AHTI+VFTRKEDL GSL++Y+R+++N+ L QL C R C FNN+
Sbjct: 137 RGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRA 196
Query: 853 XXXXXXXXXXXXXXXXXSILWENEGHYYSNQACH-------YSPWNVL------LQQAGE 993
++ + G Y+N H SP L + Q +
Sbjct: 197 TGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAERVAQKQQ 256
Query: 994 GQLHQGWGCEAGLSQESW 1047
G Q + CE +Q +W
Sbjct: 257 GCCLQRFLCEKPKAQRTW 274
>ref|XP_003360126.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 89
Score = 142 bits (358), Expect = 4e-34
Identities = 70/87 (80%), Positives = 71/87 (81%)
Frame = +1
Query: 76 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDDLAPGDTKRSLXXXXXXXXXXX 255
MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRD+LAPGD KRSL
Sbjct: 1 MSYIYSNFWDILFYPFHSRPPQACKVSALKGETKNSRDNLAPGDAKRSLFFCPTGGTEEE 60
Query: 256 XXXLIVQENFKEGLSQEPTQDRSGGLR 336
LIVQENFKEGLSQEPTQDRSGG R
Sbjct: 61 ECELIVQENFKEGLSQEPTQDRSGGKR 87
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 118 bits (295), Expect = 9e-27
Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 1/216 (0%)
Frame = +1
Query: 298 SQEPTQDR-SGGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQD 474
+Q+P++ + S GLR +LRL+LVGK G+GKSATGNSILG+K+F +S++ +T+
Sbjct: 3 AQDPSKPKTSHGLRKQNLRDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKH 62
Query: 475 FQRGCRVWAGRELEVIDTPDILSPRVAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGRFTQ 654
++G W RE+ V+DTP I P V + R + + PG HA+LLV LGR T+
Sbjct: 63 CEKGKSTWKEREVVVVDTPGIFDPEVQEEDTVKEICRCMILTSPGXHALLLVIPLGR-TR 121
Query: 655 EDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICERRHC 834
+ + ++ V G + I + TRK+DL G EY RE + + +L R+C
Sbjct: 122 QRAQASSKIXPV-GERAMQRMIXLVTRKDDLEGTDFHEYXREA-SESVRELMGKFRNRYC 179
Query: 835 GFNNKVXXXXXXXXXXXXXXXXXSILWENEGHYYSN 942
NN+ ++ E YY+N
Sbjct: 180 VVNNRATGEERKRQRDQLLSLVVRVVKECGERYYTN 215
>ref|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3-like [Sus
scrofa].
Length = 216
Score = 58.5 bits (140), Expect = 8e-09
Identities = 54/169 (31%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Frame = +1
Query: 361 LRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPVTQD--FQRGCRVWA-----GREL-- 513
+ L L G SGKS+ GN +LG F S VT+D R C + A G+E+
Sbjct: 8 INLALFGMTQSGKSSAGNILLGSTDFHSSFSPSSVTKDCTLGRSCHLHAFMRRGGQEITL 67
Query: 514 --EVIDTPDILSPRVAPGVAAQGFSRAIA--FSFPGPHAVLLV--TQLGRFTQEDQEVVR 675
+V+DTP ++ Q A+A F G H LLV + QE+ V+
Sbjct: 68 QVQVLDTPGYPHSMLSKKHVKQEVREALARHFGQEGLHLALLVQRADVPLCGQEESSPVQ 127
Query: 676 RLQEVFGVGVLAHTILVFTRKEDL--GGGSLEEYLRETDNRELAQLDVI 816
+QE+ G +T ++FT E + G + EEYLRE + L L+ I
Sbjct: 128 LIQELLGQAWKNYTAILFTHAEKIEEAGFNEEEYLREASDTLLTLLNSI 176
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,598,585
Number of extensions: 931469
Number of successful extensions: 4587
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4512
Number of HSP's successfully gapped: 7
Length of query: 453
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 351
Effective length of database: 8,804,438
Effective search space: 3090357738
Effective search space used: 3090357738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002721
(1361 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 2004 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 2004 bits (1011), Expect = 0.0
Identities = 1029/1035 (99%)
Strand = Plus / Minus
Query: 327 aggtctgagggcggatgaacggaccccgcggaagctgaggctcctgctggtgggaaaacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631489 aggtctgagggcggatgaacggaccccgcggaagctgaggctcctgctggtgggaaaacc 6631430
Query: 387 cggaagtgggaaaagcgcaacaggaaacagcatcctcggccggaagctgttcaagtgcaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631429 cggaagtgggaaaagcgcaacaggaaacagcatcctcggccggaagctgttcaagtgcaa 6631370
Query: 447 gctcagttccagaccggtgacccaggacttccagcgggggtgtcgggtgtgggctgggag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631369 gctcagttccagaccggtgacccaggacttccagcgggggtgtcgggtgtgggctgggag 6631310
Query: 507 ggagctcgaggtcatagacacccctgacatcctgtcccctcgggtggcgccgggcgtggc 566
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 6631309 ggagctcgaggtcatagacacccccgacatcctgtcccctcgggcggcgccgggcgtggc 6631250
Query: 567 cgcccagggcttcagccgagccattgccttctccttccccgggccccacgccgtcctcct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631249 cgcccagggcttcagccgagccattgccttctccttccccgggccccacgccgtcctcct 6631190
Query: 627 ggtgacacagctgggccgcttcacgcaggaggatcaagaggtggtcaggcgcctccagga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631189 ggtgacacagctgggccgcttcacgcaggaggatcaagaggtggtcaggcgcctccagga 6631130
Query: 687 agtgtttggggtgggcgtcctggcccacaccatcctggtgttcacacggaaggaagacct 746
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631129 ggtgtttggggtgggcgtcctggcccacaccatcctggtgttcacacggaaggaagacct 6631070
Query: 747 ggggggcggctccctggaagagtacctgcgagagacggacaaccgggagctggcccagct 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631069 ggggggcggctccctggaagagtacctgcgagagacggacaaccgggagctggcccagct 6631010
Query: 807 ggacgtgatctgcgagcggcgccactgcggcttcaacaacaaggtggagggggcggagca 866
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6631009 ggacgtgatctgtgagcggcgccactgcggcttcaacaacaaggtggagggggcggagca 6630950
Query: 867 ggaagcccagctggaggagctcatgcagcaaatcgaaagcatcctgtgggaaaacgaggg 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630949 ggaagcccagctggaggagctcatgcagcaaatcgaaagcatcctgtgggaaaacgaggg 6630890
Query: 927 ccattattacagcaaccaggcttgccattactccccgtggaacgtgctgctccagcaagc 986
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630889 ccattattacagcaactaggcttgccattactccccgtggaacgtgctgctccagcaagc 6630830
Query: 987 gggcgaggggcagctccaccaggggtggggttgcgaggcagggctcagccaggagtcctg 1046
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6630829 gggcgaggggcagctccaccaggggtggggctgcgaggcagggctcagccaggagtcctg 6630770
Query: 1047 gctgtagacactctgcagatccaggagacttgagggagctcacacacagctcctaagagg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630769 gctgtagacactctgcagatccaggagacttgagggagctcacacacagctcctaagagg 6630710
Query: 1107 cacccatttgagatgcgctggctttcagtgcttcccaccagcctccctccaactgagtcc 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630709 cacccatttgagatgcgctggctttcagtgcttcccaccagcctccctccaactgagtcc 6630650
Query: 1167 cacttccaagccctcacctgctctcgccagctcacgggccactgcccatgccaggctccg 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630649 cacttccaagccctcacctgctctcgccagctcacgggccactgcccatgccaggctccg 6630590
Query: 1227 gagttcccaggcccatcatcccctcttccagaacaccctccctcctctgtgcctcgccat 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630589 gagttcccaggcccatcatcccctcttccagaacaccctccctcctctgtgcctcgccat 6630530
Query: 1287 cctcaggctttccaggcctctagtagaacacacgtagagcaaaagcttcctgagggcagg 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6630529 cctcaggctttccaggcctctagtagaacacacgtagagcaaaagcttcctgagggcagg 6630470
Query: 1347 cctgtgcctcattct 1361
|||||||||||||||
Sbjct: 6630469 cctgtgcctcattct 6630455
Score = 373 bits (188), Expect = e-100
Identities = 224/241 (92%)
Strand = Plus / Minus
Query: 3 gcacggctgggctttcaacggcagttcttgagctgagctttgggatcacattttgctnnn 62
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635818 gcacggctgggctttcaacggcagttcttgagctgagctttgggatcacattttgctaaa 6635759
Query: 63 nnnnntataaacgatgtcctatatctattcaaacttctgggacattttattctacccttt 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635758 aaaaatataaacgatgtcctatatctattcaaacttctgggacattttattctacccttt 6635699
Query: 123 ccactcaaggnnnnnnnaggcctgcaaggtgtccgctctgaaaggagaaacaaagaattc 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6635698 ccactcaaggcccccccaggcctgcaaggtgtccgctctgaaaggagaaacaaagaattc 6635639
Query: 183 acgagacgacctggccccaggagacacaaaacgcagccttttcttctgcccaacaggagg 242
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 6635638 acgagacaacctggccccaggagacgcaaaacgcagccttttcttctgcccaacaggagg 6635579
Query: 243 g 243
|
Sbjct: 6635578 g 6635578
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 243 gacagaggaagaagaatgcgaactgattgtccaggagaatttcaaagaagggctgtctca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634155 gacagaggaagaagaatgcgaactgattgtccaggagaatttcaaagaagggctgtctca 6634096
Query: 303 ggagcccacccaagacagatcaggaggt 330
||||||||||||||||||||||||||||
Sbjct: 6634095 ggagcccacccaagacagatcaggaggt 6634068
Score = 73.8 bits (37), Expect = 2e-10
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 603 ccccgggccccacgccgtcctcctggtgacacagctgggccgcttcacg 651
|||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 6874295 ccccgggccccacgccctgctcctggtgacccagctgggccgcttcacg 6874343
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,175,343
Number of extensions: 318
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 5
Length of query: 1361
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1340
Effective length of database: 2,808,413,156
Effective search space: 3763273629040
Effective search space used: 3763273629040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)