Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094649.1| signal recognition particle 68 kDa protein [... 1109 0.0
>ref|NP_001094649.1| signal recognition particle 68 kDa protein [Bos taurus].
Length = 623
Score = 1109 bits (2868), Expect = 0.0
Identities = 570/623 (91%), Positives = 578/623 (92%), Gaps = 1/623 (0%)
Frame = +3
Query: 36 MAAEKQVPGXXXXXXXXXXXXXXXXX-RGAGGEENKENERPSAGSKANKEFGDSLSLEIL 212
MAAEKQVPG R AGGEENKENERPSAGSKA+KEFGDSLSLEIL
Sbjct: 1 MAAEKQVPGGGGSGGSSGGGSGGSGGGRSAGGEENKENERPSAGSKAHKEFGDSLSLEIL 60
Query: 213 QIIKESQQQHGLRHGDFXXXXXXXXXXXXXXXKTLNFKMGNRHKFTGKKVTEDLLTDNRY 392
QIIKESQQQHGLRHGDF KTLNFKMGNRHKFTGKKVTEDLLTDNRY
Sbjct: 61 QIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLLTDNRY 120
Query: 393 LLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTK 572
LLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTK
Sbjct: 121 LLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTK 180
Query: 573 LEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPN 752
LEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPN
Sbjct: 181 LEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPN 240
Query: 753 IRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRAV 932
IRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGR V
Sbjct: 241 IRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTV 300
Query: 933 PVKVDRVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRD 1112
PVK+D+VRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELK DQKQRD
Sbjct: 301 PVKIDKVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKSDQKQRD 360
Query: 1113 YPLDGESGKVSNLQYLHSYLTYIKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRPQD 1292
Y LD ESGKVSNLQYLHSYLTYIKLSTAIKRNENMA+GLQKALLQQQPEDD KR+PRPQD
Sbjct: 361 YALDVESGKVSNLQYLHSYLTYIKLSTAIKRNENMAKGLQKALLQQQPEDDSKRAPRPQD 420
Query: 1293 LIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKWSEAL 1472
LIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKW+EAL
Sbjct: 421 LIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKWNEAL 480
Query: 1473 VLYDRVLKYADEVNSDAGAFKNSLKDLPDVLELISQVRSEKCCLQAAAILDTNDPQQTET 1652
VLYDRVLKYADEVNSDAGAFKNSLKDLPDV ELI+QVRSEKC LQAAAILDTND QTET
Sbjct: 481 VLYDRVLKYADEVNSDAGAFKNSLKDLPDVQELITQVRSEKCSLQAAAILDTNDAHQTET 540
Query: 1653 SSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAFPPLE 1832
SSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQP+PCKPLFFDLALNHVAFPPLE
Sbjct: 541 SSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLE 600
Query: 1833 DKLEQKTKSGLAGYIKGIFGFRS 1901
DKLEQK KSGL GYIKGIFGFRS
Sbjct: 601 DKLEQKAKSGLTGYIKGIFGFRS 623
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 91,473,590
Number of extensions: 2694632
Number of successful extensions: 10116
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10072
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 688
Effective length of database: 14,041,694
Effective search space: 9660685472
Effective search space used: 9660685472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003271.2| signal recognition particle 68 kDa protein [... 1103 0.0
>ref|NP_001003271.2| signal recognition particle 68 kDa protein [Canis lupus familiaris].
Length = 616
Score = 1103 bits (2854), Expect = 0.0
Identities = 567/622 (91%), Positives = 579/622 (93%)
Frame = +3
Query: 36 MAAEKQVPGXXXXXXXXXXXXXXXXXRGAGGEENKENERPSAGSKANKEFGDSLSLEILQ 215
MAAEKQVPG RGAGGEENKENERPSAGSKAN+EFGDSLSLEILQ
Sbjct: 1 MAAEKQVPGGGGGGGGGSGGG-----RGAGGEENKENERPSAGSKANREFGDSLSLEILQ 55
Query: 216 IIKESQQQHGLRHGDFXXXXXXXXXXXXXXXKTLNFKMGNRHKFTGKKVTEDLLTDNRYL 395
IIKESQQQHGLRHGDF KTLNFKMGNRHKFTGKKVTEDLLTDNRYL
Sbjct: 56 IIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYL 115
Query: 396 LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL 575
LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL
Sbjct: 116 LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL 175
Query: 576 EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI 755
EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI
Sbjct: 176 EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI 235
Query: 756 RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVP 935
RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGR VP
Sbjct: 236 RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVP 295
Query: 936 VKVDRVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRDY 1115
VK+D+VRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRDY
Sbjct: 296 VKIDKVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRDY 355
Query: 1116 PLDGESGKVSNLQYLHSYLTYIKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRPQDL 1295
LDGESGKVSNLQYLHSYLTYIKLSTAI+RNENMA+GLQKA LQQQPED+ KRSPRPQDL
Sbjct: 356 TLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA-LQQQPEDESKRSPRPQDL 414
Query: 1296 IRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKWSEALV 1475
IRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLV+KAYRCFFIAQSYVLVKKWSEALV
Sbjct: 415 IRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALV 474
Query: 1476 LYDRVLKYADEVNSDAGAFKNSLKDLPDVLELISQVRSEKCCLQAAAILDTNDPQQTETS 1655
LYDRVLKYA+EVNSDAGAF+NSLKDLPDV ELI+QVRSEKC LQAAAILD +D Q ETS
Sbjct: 475 LYDRVLKYANEVNSDAGAFRNSLKDLPDVQELITQVRSEKCSLQAAAILDASDSHQPETS 534
Query: 1656 SQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAFPPLED 1835
SQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQP+PCKPLFFDLALNHVAFPPLED
Sbjct: 535 SQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLED 594
Query: 1836 KLEQKTKSGLAGYIKGIFGFRS 1901
KLEQKTKSGL GYIKGIFGFRS
Sbjct: 595 KLEQKTKSGLTGYIKGIFGFRS 616
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 95,183,767
Number of extensions: 2713176
Number of successful extensions: 10107
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10068
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 687
Effective length of database: 15,174,208
Effective search space: 10424680896
Effective search space used: 10424680896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055045.2| signal recognition particle 68 kDa protein [Hom... 1102 0.0
>ref|NP_055045.2| signal recognition particle 68 kDa protein [Homo sapiens].
Length = 627
Score = 1102 bits (2849), Expect = 0.0
Identities = 567/627 (90%), Positives = 578/627 (92%), Gaps = 5/627 (0%)
Frame = +3
Query: 36 MAAEKQVPGXXXXXXXXXXXXXXXXX----RGAGGEENKENERPSAGSKANKEFGDSLSL 203
MAAEKQVPG RGAGGEENKENERPSAGSKANKEFGDSLSL
Sbjct: 1 MAAEKQVPGGGGGGGSGGGGGSGGGGSGGGRGAGGEENKENERPSAGSKANKEFGDSLSL 60
Query: 204 EILQIIKESQQQHGLRHGDFXXXXXXXXXXXXXXXKTLNFKMGNRHKFTGKKVTEDLLTD 383
EILQIIKESQQQHGLRHGDF KTLNFKMGNRHKFTGKKVTE+LLTD
Sbjct: 61 EILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELLTD 120
Query: 384 NRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA 563
NRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA
Sbjct: 121 NRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA 180
Query: 564 KTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEI 743
KTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEI
Sbjct: 181 KTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEI 240
Query: 744 SPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRG 923
SPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRG
Sbjct: 241 SPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRG 300
Query: 924 RAVPVKVDRVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQK 1103
R VPVK+D+VRIFLLGLADNEAAI QAESEETKERLFESMLSECRDAIQ VREELKPDQK
Sbjct: 301 RTVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDAIQVVREELKPDQK 360
Query: 1104 QRDYPLDGESGKVSNLQYLHSYLTYIKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPR 1283
QRDY L+GE GKVSNLQYLHSYLTYIKLSTAIKRNENMA+GLQ+ALLQQQPEDD KRSPR
Sbjct: 361 QRDYILEGEPGKVSNLQYLHSYLTYIKLSTAIKRNENMAKGLQRALLQQQPEDDSKRSPR 420
Query: 1284 PQDLIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKWS 1463
PQDLIRLYDIILQNLVELLQLPGLEED+AFQKEIGLKTLV+KAYRCFFIAQSYVLVKKWS
Sbjct: 421 PQDLIRLYDIILQNLVELLQLPGLEEDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWS 480
Query: 1464 EALVLYDRVLKYADEVNSDAGAFKNSLKDLPDVLELISQVRSEKCCLQAAAILDTNDPQQ 1643
EALVLYDRVLKYA+EVNSDAGAFKNSLKDLPDV ELI+QVRSEKC LQAAAILD ND Q
Sbjct: 481 EALVLYDRVLKYANEVNSDAGAFKNSLKDLPDVQELITQVRSEKCSLQAAAILDANDAHQ 540
Query: 1644 TET-SSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAF 1820
TET SSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQP+PCKPLFFDLALNHVAF
Sbjct: 541 TETSSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAF 600
Query: 1821 PPLEDKLEQKTKSGLAGYIKGIFGFRS 1901
PPLEDKLEQKTKSGL GYIKGIFGFRS
Sbjct: 601 PPLEDKLEQKTKSGLTGYIKGIFGFRS 627
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 93,153,037
Number of extensions: 2643630
Number of successful extensions: 10079
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10030
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 687
Effective length of database: 14,638,160
Effective search space: 10056415920
Effective search space used: 10056415920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666144.3| signal recognition particle 68 kDa protein [Mus... 1087 0.0
>ref|NP_666144.3| signal recognition particle 68 kDa protein [Mus musculus].
Length = 625
Score = 1087 bits (2810), Expect = 0.0
Identities = 555/625 (88%), Positives = 572/625 (91%), Gaps = 3/625 (0%)
Frame = +3
Query: 36 MAAEKQVPGXXXXXXXXXXXXXXXXX---RGAGGEENKENERPSAGSKANKEFGDSLSLE 206
MAAEKQ+PG R AGG+ENKENERPSAGSKANKEFGDSLSLE
Sbjct: 1 MAAEKQIPGGGSGGGGSGSGGGGGGSGGGRSAGGDENKENERPSAGSKANKEFGDSLSLE 60
Query: 207 ILQIIKESQQQHGLRHGDFXXXXXXXXXXXXXXXKTLNFKMGNRHKFTGKKVTEDLLTDN 386
ILQIIKESQQQHGLRHGDF KTLNFKMGNRHKFTGKKVTE+LLTDN
Sbjct: 61 ILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEELLTDN 120
Query: 387 RYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAK 566
RYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAK
Sbjct: 121 RYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAK 180
Query: 567 TKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEIS 746
TKLEAQAYTAYLSGMLRFEHQEWK+AIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEIS
Sbjct: 181 TKLEAQAYTAYLSGMLRFEHQEWKSAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEIS 240
Query: 747 PNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGR 926
PNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGR
Sbjct: 241 PNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGR 300
Query: 927 AVPVKVDRVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQ 1106
VPVK+D+VRIFLLGLADNEAAI QAESEETKERLFESMLSECRDA+QAVREELKPDQKQ
Sbjct: 301 TVPVKIDKVRIFLLGLADNEAAIVQAESEETKERLFESMLSECRDALQAVREELKPDQKQ 360
Query: 1107 RDYPLDGESGKVSNLQYLHSYLTYIKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRP 1286
RDY LDGESGKVSNLQYLHSYLTYIKLSTAI+RNENMA+GL +ALLQQQPEDD KRSPRP
Sbjct: 361 RDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRP 420
Query: 1287 QDLIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVYKAYRCFFIAQSYVLVKKWSE 1466
QDLIRLYDIILQNLVELLQLPGLEEDR FQKEI LKTLV+KAYRCFFIAQSYVLVKKWSE
Sbjct: 421 QDLIRLYDIILQNLVELLQLPGLEEDRTFQKEISLKTLVFKAYRCFFIAQSYVLVKKWSE 480
Query: 1467 ALVLYDRVLKYADEVNSDAGAFKNSLKDLPDVLELISQVRSEKCCLQAAAILDTNDPQQT 1646
ALVLYDRVLKYA+EV+S GA KNSLKDLPDV ELI+QVRSEKC LQAAAILD ND QT
Sbjct: 481 ALVLYDRVLKYANEVSSHGGASKNSLKDLPDVQELITQVRSEKCSLQAAAILDANDSHQT 540
Query: 1647 ETSSQVKDNKPLVERFETFCLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAFPP 1826
+TSSQVKDN PLVERFE+FCLDPSLVTKQANLVHFPPGFQP+PCKPLFFDLALNHVAFPP
Sbjct: 541 DTSSQVKDNTPLVERFESFCLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPP 600
Query: 1827 LEDKLEQKTKSGLAGYIKGIFGFRS 1901
LEDKLEQKTKSGL GYIKGIFGFRS
Sbjct: 601 LEDKLEQKTKSGLTGYIKGIFGFRS 625
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 78,670,353
Number of extensions: 2199911
Number of successful extensions: 8210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8185
Number of HSP's successfully gapped: 1
Length of query: 798
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 689
Effective length of database: 12,343,635
Effective search space: 8504764515
Effective search space used: 8504764515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131233.2| PREDICTED: signal recognition particle 68 kD... 559 e-159
Alignment gi|XP_003131244.2| PREDICTED: hypothetical protein LOC100522159... 77 6e-14
>ref|XP_003131233.2| PREDICTED: signal recognition particle 68 kDa protein-like [Sus
scrofa].
Length = 386
Score = 559 bits (1440), Expect = e-159
Identities = 290/325 (89%), Positives = 291/325 (89%)
Frame = +3
Query: 36 MAAEKQVPGXXXXXXXXXXXXXXXXXRGAGGEENKENERPSAGSKANKEFGDSLSLEILQ 215
MAAEKQVPG RGAGGEENKENERPSAGSKANKEFGDSLSLEILQ
Sbjct: 1 MAAEKQVPGGGGGSSGGGGGGSSGGGRGAGGEENKENERPSAGSKANKEFGDSLSLEILQ 60
Query: 216 IIKESQQQHGLRHGDFXXXXXXXXXXXXXXXKTLNFKMGNRHKFTGKKVTEDLLTDNRYL 395
IIKESQQQHGLRHGDF KTLNFKMGNRHKFTGKKVTEDLLTDNRYL
Sbjct: 61 IIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYL 120
Query: 396 LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL 575
LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL
Sbjct: 121 LLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKL 180
Query: 576 EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI 755
EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI
Sbjct: 181 EAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNI 240
Query: 756 RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVP 935
RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVP
Sbjct: 241 RYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVP 300
Query: 936 VKVDRVRIFLLGLADNEAAIAQAES 1010
VKVDRVRIFLLGLADNEAAIAQ +
Sbjct: 301 VKVDRVRIFLLGLADNEAAIAQVRA 325
>ref|XP_003131244.2| PREDICTED: hypothetical protein LOC100522159 [Sus scrofa].
Length = 420
Score = 76.6 bits (187), Expect = 6e-14
Identities = 41/62 (66%), Positives = 41/62 (66%)
Frame = +3
Query: 3 LSQPALRRGGKMAAEKQVPGXXXXXXXXXXXXXXXXXRGAGGEENKENERPSAGSKANKE 182
LSQPALRRGGKMAAEKQVPG RGAGGEENKENERPSAGSK E
Sbjct: 44 LSQPALRRGGKMAAEKQVPGGGGGSSGGGGGGSSGGGRGAGGEENKENERPSAGSKDGGE 103
Query: 183 FG 188
G
Sbjct: 104 SG 105
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 59,673,935
Number of extensions: 1831113
Number of successful extensions: 6451
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6418
Number of HSP's successfully gapped: 2
Length of query: 798
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 691
Effective length of database: 8,679,953
Effective search space: 5997847523
Effective search space used: 5997847523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002722
(2395 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 902 0.0
Sscrofa_Chr08 80 6e-12
>Sscrofa_Chr12
|| Length = 63588571
Score = 902 bits (455), Expect = 0.0
Identities = 455/455 (100%)
Strand = Plus / Plus
Query: 1675 agcccctggtggagcggtttgagaccttctgcctggacccttccctcgtcaccaagcaag 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5356974 agcccctggtggagcggtttgagaccttctgcctggacccttccctcgtcaccaagcaag 5357033
Query: 1735 ccaacctcgtgcacttcccgccgggattccagcccgtcccctgcaagcccctcttctttg 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357034 ccaacctcgtgcacttcccgccgggattccagcccgtcccctgcaagcccctcttctttg 5357093
Query: 1795 acctggccctcaaccacgtggccttcccacccctggaggacaagttggagcagaagacca 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357094 acctggccctcaaccacgtggccttcccacccctggaggacaagttggagcagaagacca 5357153
Query: 1855 agagcggcctcgccggatacatcaagggcatctttggcttcaggagctaaccaggctctt 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357154 agagcggcctcgccggatacatcaagggcatctttggcttcaggagctaaccaggctctt 5357213
Query: 1915 cctgggggcaggggagcctgacgctgggtctgtgttgggagaaacgccagcagggtccgt 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357214 cctgggggcaggggagcctgacgctgggtctgtgttgggagaaacgccagcagggtccgt 5357273
Query: 1975 ctgttaaatccaggtctgcgttggcccagggcgggagtgtgacaggctcagccctgcgtt 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357274 ctgttaaatccaggtctgcgttggcccagggcgggagtgtgacaggctcagccctgcgtt 5357333
Query: 2035 cctgtgtctcgtgcggtgtacacttccattcgtaaccattgtgctggggggcgccctgtc 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357334 cctgtgtctcgtgcggtgtacacttccattcgtaaccattgtgctggggggcgccctgtc 5357393
Query: 2095 ggcttctgtaaacgtttggggtcctccccagacct 2129
|||||||||||||||||||||||||||||||||||
Sbjct: 5357394 ggcttctgtaaacgtttggggtcctccccagacct 5357428
Score = 414 bits (209), Expect = e-113
Identities = 236/241 (97%), Gaps = 3/241 (1%)
Strand = Plus / Plus
Query: 2158 tcagtgacatgttggtggggagccccgccaggcacggatggggacttgaatgtgttgtcc 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357456 tcagtgacatgttggtggggagccccgccaggcacggatggggacttgaatgtgttgtcc 5357515
Query: 2218 tgttgcttcagtaccatggatgtgaaatgaactcagccttgctgcgagcgtccaggcccc 2277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357516 tgttgcttcagtaccatggatgtgaaatgaactcagccttgctgcgagcgtccaggcccc 5357575
Query: 2278 cttgaggagtttgcccatgactgggaaacactgcagcgtcgccccagaa-tacagtcagc 2336
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 5357576 cttgaggagtttgcccatgactgggaaacactgcagcgtcgccccagaattacagtcagc 5357635
Query: 2337 cttattcccctccct-caagttgaagtgaagacgtttccgaacaagc-aagagctctatt 2394
||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 5357636 cttattcccctccctccaagtgaaagtgaagacgtttccgaacaagcaaagagctctatt 5357695
Query: 2395 t 2395
|
Sbjct: 5357696 t 5357696
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 387 agatatttgcttctggttctgatggatgctgagagagcctggagctacgccatgcagctc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5283984 agatatttgcttctggttctgatggatgctgagagagcctggagctacgccatgcagctc 5284043
Query: 447 aagcaggaagccaacactgaaccccgaaaacggttccacttactgtctcgcctccgcaaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284044 aagcaggaagccaacactgaaccccgaaaacggttccacttactgtctcgcctccgcaaa 5284103
Query: 507 gccgtgaagcatgccgaggagttggaacgcttgtgtgagagcaatcgtgtggacgccaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5284104 gccgtgaagcatgccgaggagttggaacgcttgtgtgagagcaatcgtgtggacgccaag 5284163
Query: 567 accaagctggaggctcagg 585
|||||||||||||||||||
Sbjct: 5284164 accaagctggaggctcagg 5284182
Score = 317 bits (160), Expect = 2e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1163 cagctacctgacttacatcaagctgtcgacagcgatcaagcggaacgagaacatggccag 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352236 cagctacctgacttacatcaagctgtcgacagcgatcaagcggaacgagaacatggccag 5352295
Query: 1223 aggcctgcagaaggcgctgctgcagcagcagccggaagatgacggcaagcgctccccccg 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352296 aggcctgcagaaggcgctgctgcagcagcagccggaagatgacggcaagcgctccccccg 5352355
Query: 1283 gccccaggacctgatccggctctatgacatcatcctgcag 1322
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352356 gccccaggacctgatccggctctatgacatcatcctgcag 5352395
Score = 285 bits (144), Expect = 6e-74
Identities = 144/144 (100%)
Strand = Plus / Plus
Query: 859 aggcgctgatcacccagactcgagccaagcaggcggccaccatgagcgaggtggagtgga 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288315 aggcgctgatcacccagactcgagccaagcaggcggccaccatgagcgaggtggagtgga 5288374
Query: 919 gaggccgcgcggtcccggtgaaggtcgacagagtgaggatctttttactgggactggccg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288375 gaggccgcgcggtcccggtgaaggtcgacagagtgaggatctttttactgggactggccg 5288434
Query: 979 acaacgaggcggccatcgcccagg 1002
||||||||||||||||||||||||
Sbjct: 5288435 acaacgaggcggccatcgcccagg 5288458
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1415 cagatgtttcttcatcgctcagtcctacgtgctggtgaagaagtggagcgaagcccttgt 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354336 cagatgtttcttcatcgctcagtcctacgtgctggtgaagaagtggagcgaagcccttgt 5354395
Query: 1475 cctgtatgacagggtcctgaaatatgcagacgaagtgaattctgatgccggcgccttcaa 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354396 cctgtatgacagggtcctgaaatatgcagacgaagtgaattctgatgccggcgccttcaa 5354455
Query: 1535 gaacagcctcaagg 1548
||||||||||||||
Sbjct: 5354456 gaacagcctcaagg 5354469
Score = 236 bits (119), Expect = 5e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 270 tacagaggctactgttcccggagacaaagacgtcttcggaaaacactcaacttcaagatg 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5278146 tacagaggctactgttcccggagacaaagacgtcttcggaaaacactcaacttcaagatg 5278205
Query: 330 gggaacagacacaagttcacagggaaaaaagtaaccgaggatcttctgactgataacag 388
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5278206 gggaacagacacaagttcacagggaaaaaagtaaccgaggatcttctgactgataacag 5278264
Score = 222 bits (112), Expect = 7e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 663 tgcaaaactatctacgagaagctggccagtgctttcacagaggagcaggccgtgctctac 722
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285642 tgcagaactatctacgagaagctggccagtgctttcacagaggagcaggccgtgctctac 5285701
Query: 723 aaccagcgggtggaggagatctcccccaacatccgctactgcgcgtacaacatcgg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285702 aaccagcgggtggaggagatctcccccaacatccgctactgcgcgtacaacatcgg 5285757
Score = 202 bits (102), Expect = 6e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 999 caggctgaaagcgaagaaaccaaggagcggctgttcgagtccatgctcagcgagtgtcgg 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5346091 caggctgaaagcgaagaaaccaaggagcggctgttcgagtccatgctcagcgagtgtcgg 5346150
Query: 1059 gacgccatccaggccgttcgcgaagagctcaagccagaccag 1100
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5346151 gacgccatccaggccgttcgcgaagagctcaagccagaccag 5346192
Score = 198 bits (100), Expect = 1e-47
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1318 tgcagaatctggtggaattgctccagcttcctggcttagaagaggacagagccttccaga 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353042 tgcagaatctggtggaattgctccagcttcctggcttagaagaggacagagccttccaga 5353101
Query: 1378 aagaaataggcctcaaaactctggtgtacaaggcttacag 1417
||||||||||||||||||||||||||||||||||||||||
Sbjct: 5353102 aagaaataggcctcaaaactctggtgtacaaggcttacag 5353141
Score = 188 bits (95), Expect = 1e-44
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 113 acgcggtgccggaggagaggaaaataaggaaaatgaacggccttcagccgggtcgaaggc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272549 acgcggtgccggaggagaggaaaataaggaaaatgaacggccttcagccgggtcgaaggc 5272608
Query: 173 aaacaaagaattcggggatagcctgagtttggaga 207
|||||||||||||||||||||||||||||||||||
Sbjct: 5272609 aaacaaagaattcggggatagcctgagtttggaga 5272643
Score = 170 bits (86), Expect = 2e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 582 caggcttacacggcttacctctcaggaatgctgcggtttgaacatcaggaatggaaagct 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5285092 caggcttacacggcttacctctcaggaatgctgcggtttgaacatcaggaatggaaagct 5285151
Query: 642 gccattgaggcttttaacaaatgcaa 667
||||||||||||||||||||||||||
Sbjct: 5285152 gccattgaggcttttaacaaatgcaa 5285177
Score = 168 bits (85), Expect = 9e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 777 ggggaccagtcagctatcaatgaactcatgcagatgagattgaggtctgggggcactgag 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5286115 ggggaccagtcagctatcaatgaactcatgcagatgagattgaggtctgggggcactgag 5286174
Query: 837 gggctcctggctgaaaaattggagg 861
|||||||||||||||||||||||||
Sbjct: 5286175 gggctcctggctgaaaaattggagg 5286199
Score = 155 bits (78), Expect = 1e-34
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1546 aggacctgcctgacgtgctggagctcatctcgcaagtgaggtcggaaaagtgctgcctgc 1605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355978 aggacctgcctgacgtgctggagctcatctcgcaagtgaggtcggaaaagtgctgcctgc 5356037
Query: 1606 aggcggccgccatcctgg 1623
||||||||||||||||||
Sbjct: 5356038 aggcggccgccatcctgg 5356055
Score = 135 bits (68), Expect = 1e-28
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1098 cagaaacagagagactatccccttgatggcgagtcggggaaggtgtctaatcttcagtac 1157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5349498 cagaaacagagagactatccccttgatggcgagtcggggaaggtgtctaatcttcagtac 5349557
Query: 1158 ctgcacag 1165
||||||||
Sbjct: 5349558 ctgcacag 5349565
Score = 133 bits (67), Expect = 5e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 208 ttcttcagattatcaaggaatcccagcagcagcatggtttacggcatggagattttcaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5274496 ttcttcagattatcaaggaatcccagcagcagcatggtttacggcatggagattttcaga 5274555
Query: 268 ggtacag 274
|||||||
Sbjct: 5274556 ggtacag 5274562
Score = 123 bits (62), Expect = 5e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 ctctatcccagcctgctctgcggcgcgggggcaagatggctgctgagaaacaggttcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5272437 ctctatcccagcctgctctgcggcgcgggggcaagatggctgctgagaaacaggttcctg 5272496
Query: 61 ga 62
||
Sbjct: 5272497 ga 5272498
Score = 107 bits (54), Expect = 3e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1623 gatacaaatgacccccagcaaacggagacctcgtcccaagtcaaggacaacaag 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5356495 gatacaaatgacccccagcaaacggagacctcgtcccaagtcaaggacaacaag 5356548
>Sscrofa_Chr08
|| Length = 148491826
Score = 79.8 bits (40), Expect = 6e-12
Identities = 120/144 (83%), Gaps = 2/144 (1%)
Strand = Plus / Minus
Query: 2205 gaatgtgttgtcctgttgcttcagtaccatggatgtgaaatgaactcagccttgctgcga 2264
|||||| || || |||| |||||||||||||||| ||||||||||||| ||||||| |
Sbjct: 107100959 gaatgttttatcatgtttcttcagtaccatggatttgaaatgaactcatgcttgctgtaa 107100900
Query: 2265 gcgtccaggcccccttgaggagtttgcccatgactgggaaaca-ctgcagcgtcgcccca 2323
|| ||||| ||||||| ||||||| |||||||| ||||||| ||||| ||| || ||
Sbjct: 107100899 gcatccagaatcccttgaagagtttgtccatgactaggaaacatttgcagtgtcaccaca 107100840
Query: 2324 gaa-tacagtcagccttattcccc 2346
||| ||||| ||||||| ||||||
Sbjct: 107100839 gaattacagccagcctttttcccc 107100816
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,580,523
Number of extensions: 328
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 19
Length of query: 2395
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2373
Effective length of database: 2,808,408,574
Effective search space: 6664353546102
Effective search space used: 6664353546102
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)