Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095640.1| secretory carrier-associated membrane protei... 529 e-150
Alignment gi|NP_001069522.1| secretory carrier-associated membrane protei... 305 6e-83
Alignment gi|NP_001030503.1| secretory carrier-associated membrane protei... 253 3e-67
Alignment gi|NP_001160037.1| secretory carrier-associated membrane protei... 196 4e-50
Alignment gi|NP_001019737.1| secretory carrier-associated membrane protei... 190 2e-48
>ref|NP_001095640.1| secretory carrier-associated membrane protein 2 [Bos taurus].
Length = 328
Score = 529 bits (1362), Expect = e-150
Identities = 260/327 (79%), Positives = 271/327 (82%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MS+FDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPV+Q+PG SQP
Sbjct: 1 MSSFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVSQMPGASQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD QNTVANLHVRENNW
Sbjct: 61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELDRKAAELERKERELQNTVANLHVRENNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLP+WCP+KPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR
Sbjct: 121 PPLPVWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVGIP 847
GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDN CQIGIYIIQL+GIP
Sbjct: 181 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLIGIP 240
Query: 848 SLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ 1027
SLGDSGWIAALST+K +LAVS+IMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ
Sbjct: 241 SLGDSGWIAALSTMKHNLAVSVIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ 300
Query: 1028 EEFSQGIFSSRTFQXXXXXXXPRAFRG 1108
EEFSQGIFSSRTF+ AF+G
Sbjct: 301 EEFSQGIFSSRTFRSAASSAAQGAFQG 327
>ref|NP_001069522.1| secretory carrier-associated membrane protein 1 [Bos taurus].
Length = 354
Score = 305 bits (780), Expect = 6e-83
Identities = 149/316 (47%), Positives = 202/316 (63%), Gaps = 2/316 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPS-Q 304
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ V PS Q
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGNVKMPNVPSTQ 60
Query: 305 PAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVREN 481
PA+++P+ E P EEL+ QN + H R+N
Sbjct: 61 PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRKN 118
Query: 482 NWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDT 661
NWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 119 NWPPLPDNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVDP 178
Query: 662 SRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVG 841
RGVDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q G
Sbjct: 179 PRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAG 238
Query: 842 IPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQ 1021
+ G+ GWI++L+ L + + V I+M+++A FT AV+SL + K+VH LYR TGASF++
Sbjct: 239 FHNWGNCGWISSLTGLNKSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEK 298
Query: 1022 AQEEFSQGIFSSRTFQ 1069
AQ+EF+ G+ S++T Q
Sbjct: 299 AQQEFATGVMSNKTVQ 314
>ref|NP_001030503.1| secretory carrier-associated membrane protein 3 [Bos taurus].
Length = 347
Score = 253 bits (645), Expect = 3e-67
Identities = 133/317 (41%), Positives = 183/317 (57%), Gaps = 13/317 (4%)
Frame = +2
Query: 146 NPFADPVDV-NPFQDPSVTQ-LTNAPQGGLAEFNPFSETNAATT----VPVTQLPGPSQP 307
NPFA+P ++ NPFQDP+V Q + L +NPF + PV P + P
Sbjct: 9 NPFAEPGELDNPFQDPAVIQHRPSTHYATLDVYNPFETREPPPSYEPPAPVPIAPPSAPP 68
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQN-------TVANL 466
+ P E L + + +
Sbjct: 69 LQSSRKLSPTEPKNYGSYSTQASTAAATAELLKKQEELNRKAEELDRRERELRHAALGST 128
Query: 467 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 646
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L LN LACLA
Sbjct: 129 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLAS 188
Query: 647 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYI 826
F V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+ Q +++
Sbjct: 189 FCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFV 248
Query: 827 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 1006
+Q +GIP G SGWI+AL LK + AV+++M++VA FFT AVL + +LKR+HSLYRRTG
Sbjct: 249 LQAIGIPGWGFSGWISALVVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYRRTG 308
Query: 1007 ASFQQAQEEFSQGIFSS 1057
ASFQ+AQ+EF+ G+FS+
Sbjct: 309 ASFQKAQQEFAAGVFSN 325
>ref|NP_001160037.1| secretory carrier-associated membrane protein 5 [Bos taurus].
Length = 235
Score = 196 bits (497), Expect = 4e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVLFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|NP_001019737.1| secretory carrier-associated membrane protein 4 [Bos taurus].
Length = 230
Score = 190 bits (482), Expect = 2e-48
Identities = 84/191 (43%), Positives = 128/191 (67%)
Frame = +2
Query: 473 RENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFL 652
+ENN+PPLP + P+KPCFYQ+FS EIP ++Q + K +Y LW+ + TL +NL+ACLAW++
Sbjct: 4 KENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCATLGVNLVACLAWWI 63
Query: 653 VDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQ 832
S G +FGL++LW ++F+PC ++CW+RP YKAFRSD+ Q + IIQ
Sbjct: 64 AGGS-GANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFILTIIQ 122
Query: 833 LVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGAS 1012
VG G GW+AA+ + + +++M++ A F++ A + ++ +VHS+YR TG S
Sbjct: 123 AVGFSGWGACGWLAAIGFFQTSVGAAVVMLLPAIMFSMSAAMMAVMIMKVHSIYRGTGGS 182
Query: 1013 FQQAQEEFSQG 1045
FQ+AQ E+S G
Sbjct: 183 FQKAQTEWSTG 193
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,298,023
Number of extensions: 1171018
Number of successful extensions: 5309
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5305
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544777.2| PREDICTED: similar to Secretory carrier-associa... 509 e-144
Alignment gi|XP_867134.1| PREDICTED: similar to Secretory carrier-associa... 489 e-138
Alignment gi|XP_536314.2| PREDICTED: similar to Secretory carrier-associa... 307 1e-83
Alignment gi|XP_859726.1| PREDICTED: similar to Secretory carrier-associa... 303 2e-82
Alignment gi|XP_859755.1| PREDICTED: similar to Secretory carrier-associa... 273 2e-73
Alignment gi|XP_851948.1| PREDICTED: similar to secretory carrier membran... 261 1e-69
Alignment gi|XP_864765.1| PREDICTED: similar to secretory carrier membran... 260 1e-69
Alignment gi|XP_864743.1| PREDICTED: similar to secretory carrier membran... 253 2e-67
Alignment gi|XP_850806.1| PREDICTED: similar to secretory carrier membran... 247 2e-65
Alignment gi|XP_864802.1| PREDICTED: similar to secretory carrier membran... 242 5e-64
>ref|XP_544777.2| PREDICTED: similar to Secretory carrier-associated membrane protein 2
isoform 1 [Canis familiaris].
Length = 329
Score = 509 bits (1310), Expect = e-144
Identities = 254/328 (77%), Positives = 266/328 (81%), Gaps = 1/328 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MS+ DTNPFADPVDVNPFQDPSVTQLTNAPQG LAEFNPFSETNAATTVPVTQLPGPSQP
Sbjct: 1 MSSVDTNPFADPVDVNPFQDPSVTQLTNAPQGSLAEFNPFSETNAATTVPVTQLPGPSQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD Q+TVA+LHVRENNW
Sbjct: 61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELDRKAAELERKERELQSTVASLHVRENNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLP WCP+KPCFYQDFS EIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD+S+
Sbjct: 121 PPLPFWCPVKPCFYQDFSVEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDSSK 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVGIP 847
GVDFGLSILW ++FTPCAFLCWYRPIYKAFRSDN CQI IYIIQLVGIP
Sbjct: 181 GVDFGLSILWLIMFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFIFFCQIVIYIIQLVGIP 240
Query: 848 SLGDSGWIAALSTLKED-LAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQA 1024
LGDSGWIAALSTLK+D LAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQA
Sbjct: 241 GLGDSGWIAALSTLKQDHLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQA 300
Query: 1025 QEEFSQGIFSSRTFQXXXXXXXPRAFRG 1108
QEEFSQGIFS+RTF+ AF+G
Sbjct: 301 QEEFSQGIFSNRTFRSAASSAARGAFQG 328
>ref|XP_867134.1| PREDICTED: similar to Secretory carrier-associated membrane protein 2
isoform 2 [Canis familiaris].
Length = 368
Score = 489 bits (1260), Expect = e-138
Identities = 254/367 (69%), Positives = 266/367 (72%), Gaps = 40/367 (10%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MS+ DTNPFADPVDVNPFQDPSVTQLTNAPQG LAEFNPFSETNAATTVPVTQLPGPSQP
Sbjct: 1 MSSVDTNPFADPVDVNPFQDPSVTQLTNAPQGSLAEFNPFSETNAATTVPVTQLPGPSQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD Q+TVA+LHVRENNW
Sbjct: 61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELDRKAAELERKERELQSTVASLHVRENNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLP WCP+KPCFYQDFS EIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD+S+
Sbjct: 121 PPLPFWCPVKPCFYQDFSVEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDSSK 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAF------------------------------ 757
GVDFGLSILW ++FTPCAFLCWYRPIYKAF
Sbjct: 181 GVDFGLSILWLIMFTPCAFLCWYRPIYKAFRPQGWGRAVAEPSHALGRQLCLVPRSSSAL 240
Query: 758 ---------RSDNXXXXXXXXXXXXCQIGIYIIQLVGIPSLGDSGWIAALSTLKED-LAV 907
RSDN CQI IYIIQLVGIP LGDSGWIAALSTLK+D LAV
Sbjct: 241 PSCLLAPCARSDNSFSFFVFFFIFFCQIVIYIIQLVGIPGLGDSGWIAALSTLKQDHLAV 300
Query: 908 SIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQEEFSQGIFSSRTFQXXXXXX 1087
SIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQEEFSQGIFS+RTF+
Sbjct: 301 SIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQEEFSQGIFSNRTFRSAASSA 360
Query: 1088 XPRAFRG 1108
AF+G
Sbjct: 361 ARGAFQG 367
>ref|XP_536314.2| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 1 [Canis
familiaris].
Length = 338
Score = 307 bits (786), Expect = 1e-83
Identities = 149/317 (47%), Positives = 206/317 (64%), Gaps = 3/317 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAAT--TVPVTQLPGPS 301
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ TV + +P +
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGTVKMPNVPS-T 59
Query: 302 QPAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRE 478
QPA+++P+ E P EEL+ QN + H R+
Sbjct: 60 QPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRK 117
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NNWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 118 NNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVD 177
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+RGVDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q
Sbjct: 178 PTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
G + G+ GWI++L+ L + + V I+M+++A FT AV+SL + K+VH LYR TGASF+
Sbjct: 238 GFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFE 297
Query: 1019 QAQEEFSQGIFSSRTFQ 1069
+AQ+EF+ G+ S++T Q
Sbjct: 298 KAQQEFATGVMSNKTVQ 314
>ref|XP_859726.1| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 2 [Canis
familiaris].
Length = 341
Score = 303 bits (776), Expect = 2e-82
Identities = 148/318 (46%), Positives = 206/318 (64%), Gaps = 4/318 (1%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAAT--TVPVTQLPGPS 301
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ TV + +P +
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGTVKMPNVPS-T 59
Query: 302 QPAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHV-R 475
QPA+++P+ E P EEL+ QN + + R
Sbjct: 60 QPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQHGTLSR 119
Query: 476 ENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLV 655
+NNWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF V
Sbjct: 120 KNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCV 179
Query: 656 DTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQL 835
D +RGVDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q
Sbjct: 180 DPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQA 239
Query: 836 VGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASF 1015
G + G+ GWI++L+ L + + V I+M+++A FT AV+SL + K+VH LYR TGASF
Sbjct: 240 AGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASF 299
Query: 1016 QQAQEEFSQGIFSSRTFQ 1069
++AQ+EF+ G+ S++T Q
Sbjct: 300 EKAQQEFATGVMSNKTVQ 317
>ref|XP_859755.1| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 3 [Canis
familiaris].
Length = 312
Score = 273 bits (698), Expect = 2e-73
Identities = 136/316 (43%), Positives = 189/316 (59%), Gaps = 2/316 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVT-QLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQ 304
MS FD+NPFADP NPF+ P T ++ N P +Q
Sbjct: 1 MSDFDSNPFADPDLNNPFKPPPGTVKMPNVPS--------------------------TQ 34
Query: 305 PAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVREN 481
PA+++P+ E P EEL+ QN + H R+N
Sbjct: 35 PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRKN 92
Query: 482 NWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDT 661
NWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 93 NWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVDP 152
Query: 662 SRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVG 841
+RGVDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q G
Sbjct: 153 TRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAG 212
Query: 842 IPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQ 1021
+ G+ GWI++L+ L + + V I+M+++A FT AV+SL + K+VH LYR TGASF++
Sbjct: 213 FHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEK 272
Query: 1022 AQEEFSQGIFSSRTFQ 1069
AQ+EF+ G+ S++T Q
Sbjct: 273 AQQEFATGVMSNKTVQ 288
>ref|XP_851948.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 1 [Canis familiaris].
Length = 347
Score = 261 bits (666), Expect = 1e-69
Identities = 145/326 (44%), Positives = 195/326 (59%), Gaps = 14/326 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQ 286
+A S NPFA P ++ NPFQDP+V Q +PQ L +NPF E A P
Sbjct: 1 MAQSRDGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAP 60
Query: 287 LPGPSQPAV-----LQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXX 442
LP PS P++ L P+ EP EEL+
Sbjct: 61 LPSPSAPSLQSSRKLSPT-EPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERE 119
Query: 443 XQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLF 619
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L
Sbjct: 120 LQHAALGGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALL 179
Query: 620 LNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXX 799
LN LACLA F V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 180 LNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFI 239
Query: 800 XXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKR 979
Q ++++Q +GIP G SGWI+AL LK + AV+++M++VA FT AVL + +LKR
Sbjct: 240 FFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKR 299
Query: 980 VHSLYRRTGASFQQAQEEFSQGIFSS 1057
+HSLYRRTGASFQ+AQ+EF+ G+FS+
Sbjct: 300 IHSLYRRTGASFQKAQQEFAAGVFSN 325
>ref|XP_864765.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 4 [Canis familiaris].
Length = 347
Score = 260 bits (665), Expect = 1e-69
Identities = 145/326 (44%), Positives = 195/326 (59%), Gaps = 14/326 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQ 286
+A S NPFA P ++ NPFQDP+V Q +PQ L +NPF E A P
Sbjct: 1 MAQSRDGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAP 60
Query: 287 LPGPSQPAV-----LQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXX 442
LP PS P++ L P+ EP EEL+
Sbjct: 61 LPSPSAPSLQSSRKLSPT-EPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERE 119
Query: 443 XQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLF 619
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L
Sbjct: 120 LQHAALGGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMFCTLALL 179
Query: 620 LNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXX 799
LN LACLA F V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 180 LNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFI 239
Query: 800 XXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKR 979
Q ++++Q +GIP G SGWI+AL LK + AV+++M++VA FT AVL + +LKR
Sbjct: 240 FFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKR 299
Query: 980 VHSLYRRTGASFQQAQEEFSQGIFSS 1057
+HSLYRRTGASFQ+AQ+EF+ G+FS+
Sbjct: 300 IHSLYRRTGASFQKAQQEFAAGVFSN 325
>ref|XP_864743.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 3 [Canis familiaris].
Length = 357
Score = 253 bits (646), Expect = 2e-67
Identities = 146/336 (43%), Positives = 194/336 (57%), Gaps = 24/336 (7%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQ 286
+A S NPFA P ++ NPFQDP+V Q +PQ L +NPF E A P
Sbjct: 1 MAQSRDGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAP 60
Query: 287 LPGPSQPAV-----LQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXX 442
LP PS P++ L P+ EP EEL+
Sbjct: 61 LPSPSAPSLQSSRKLSPT-EPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERE 119
Query: 443 XQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSV--- 610
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM V
Sbjct: 120 LQHAALGGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCEYVLYL 179
Query: 611 -------TLFLNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDN 769
L LN LACLA F V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 180 CPLGSTLALLLNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDS 239
Query: 770 XXXXXXXXXXXXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLC 949
Q ++++Q +GIP G SGWI+AL LK + AV+++M++VA FT
Sbjct: 240 SFNFFVFFFIFFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGI 299
Query: 950 AVLSLFLLKRVHSLYRRTGASFQQAQEEFSQGIFSS 1057
AVL + +LKR+HSLYRRTGASFQ+AQ+EF+ G+FS+
Sbjct: 300 AVLGIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSN 335
>ref|XP_850806.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
[Canis familiaris].
Length = 374
Score = 247 bits (630), Expect = 2e-65
Identities = 139/323 (43%), Positives = 188/323 (58%), Gaps = 14/323 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQ 286
+A S NPF P + NPFQDP+V Q +PQ L +NPF E A P
Sbjct: 1 MAQSRDGENPFIRPGKLDNPFQDPAVIQHQPSPQYATLDVYNPFETRELPLAYEPPAPAP 60
Query: 287 LPGPSQPAV-----LQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXX 442
LP PS P++ L P+ EP EEL+
Sbjct: 61 LPSPSAPSLQSSRKLSPT-EPKNYGSYSTQASAAAATAELLKKPEELNRKAEELDWRERE 119
Query: 443 XQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLF 619
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L
Sbjct: 120 LQHAALGGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALL 179
Query: 620 LNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXX 799
LN LACLA F V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRS++
Sbjct: 180 LNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSNSSFNFFVFFFI 239
Query: 800 XXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKR 979
Q ++++Q +GIP G SGWI+AL LK + AV+++M++VA FT AVL + +LKR
Sbjct: 240 FFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKR 299
Query: 980 VHSLYRRTGASFQQAQEEFSQGI 1048
+HSLYRRT SFQ+AQ+EF+ G+
Sbjct: 300 IHSLYRRTSVSFQKAQQEFAAGV 322
>ref|XP_864802.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 2
isoform 6 [Canis familiaris].
Length = 321
Score = 242 bits (617), Expect = 5e-64
Identities = 108/195 (55%), Positives = 146/195 (74%)
Frame = +2
Query: 473 RENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFL 652
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L LN LACLA F
Sbjct: 105 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLASFC 164
Query: 653 VDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQ 832
V+TS G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+ Q ++++Q
Sbjct: 165 VETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQ 224
Query: 833 LVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGAS 1012
+GIP G SGWI+AL LK + AV+++M++VA FT AVL + +LKR+HSLYRRTGAS
Sbjct: 225 AIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGAS 284
Query: 1013 FQQAQEEFSQGIFSS 1057
FQ+AQ+EF+ G+FS+
Sbjct: 285 FQKAQQEFAAGVFSN 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,864,153
Number of extensions: 1192160
Number of successful extensions: 5420
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5402
Number of HSP's successfully gapped: 16
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005688.2| secretory carrier-associated membrane protein 2... 508 e-144
Alignment gi|NP_004857.4| secretory carrier-associated membrane protein 1... 305 6e-83
Alignment gi|NP_005689.2| secretory carrier-associated membrane protein 3... 258 9e-69
Alignment gi|NP_443069.1| secretory carrier-associated membrane protein 3... 242 4e-64
Alignment gi|NP_620417.1| secretory carrier-associated membrane protein 5... 196 4e-50
Alignment gi|NP_001171583.1| secretory carrier-associated membrane protei... 196 4e-50
Alignment gi|NP_001171582.1| secretory carrier-associated membrane protei... 196 4e-50
Alignment gi|NP_524558.1| secretory carrier-associated membrane protein 4... 181 8e-46
>ref|NP_005688.2| secretory carrier-associated membrane protein 2 [Homo sapiens].
Length = 329
Score = 508 bits (1307), Expect = e-144
Identities = 253/328 (77%), Positives = 264/328 (80%), Gaps = 1/328 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPG SQP
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGSSQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD QNTVANLHVR+NNW
Sbjct: 61 AVLQPSVEPTQPTPQAVVSAAQAGLLRQQEELDRKAAELERKERELQNTVANLHVRQNNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLP WCP+KPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWF ++S+
Sbjct: 121 PPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSK 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVGIP 847
GVDFGLSILWF+IFTPCAFLCWYRPIYKAFRSDN CQIGIYIIQLVGIP
Sbjct: 181 GVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP 240
Query: 848 SLGDSGWIAALSTL-KEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQA 1024
LGDSGWIAALSTL LA+S+IMMVVAGFFTLCAVLS+FLL+RVHSLYRRTGASFQQA
Sbjct: 241 GLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQA 300
Query: 1025 QEEFSQGIFSSRTFQXXXXXXXPRAFRG 1108
QEEFSQGIFSSRTF AF+G
Sbjct: 301 QEEFSQGIFSSRTFHRAASSAAQGAFQG 328
>ref|NP_004857.4| secretory carrier-associated membrane protein 1 [Homo sapiens].
Length = 338
Score = 305 bits (780), Expect = 6e-83
Identities = 147/317 (46%), Positives = 206/317 (64%), Gaps = 3/317 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATT--VPVTQLPGPS 301
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ V + +P +
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGGVKMPNVPN-T 59
Query: 302 QPAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRE 478
QPA+++P+ E P EEL+ QN + H R+
Sbjct: 60 QPAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRK 117
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NNWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 118 NNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVD 177
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
++R VDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q
Sbjct: 178 SARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
G + G+ GWI++L+ L +++ V I+M+++A FT AV+SL + K+VH LYR TGASF+
Sbjct: 238 GFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFE 297
Query: 1019 QAQEEFSQGIFSSRTFQ 1069
+AQ+EF+ G+ S++T Q
Sbjct: 298 KAQQEFATGVMSNKTVQ 314
>ref|NP_005689.2| secretory carrier-associated membrane protein 3 isoform 1 [Homo
sapiens].
Length = 347
Score = 258 bits (658), Expect = 9e-69
Identities = 145/326 (44%), Positives = 194/326 (59%), Gaps = 14/326 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV-TQ 286
+A S NPFA+P ++ NPFQDP+V Q + Q L +NPF E A P
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAP 60
Query: 287 LPGPSQPAVLQPS-----VEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXX 442
LP PS P+ LQPS EP EEL+
Sbjct: 61 LPPPSAPS-LQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERE 119
Query: 443 XQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLF 619
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L
Sbjct: 120 LQHAALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALL 179
Query: 620 LNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXX 799
LN LACLA F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 180 LNFLACLASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFI 239
Query: 800 XXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKR 979
Q ++++Q +GIP G SGWI+AL K + AVS++M++VA FT AVL + +LKR
Sbjct: 240 FFVQDVLFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKR 299
Query: 980 VHSLYRRTGASFQQAQEEFSQGIFSS 1057
+HSLYRRTGASFQ+AQ+EF+ G+FS+
Sbjct: 300 IHSLYRRTGASFQKAQQEFAAGVFSN 325
>ref|NP_443069.1| secretory carrier-associated membrane protein 3 isoform 2 [Homo
sapiens].
Length = 321
Score = 242 bits (618), Expect = 4e-64
Identities = 132/317 (41%), Positives = 179/317 (56%), Gaps = 5/317 (1%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGP 298
+A S NPFA+P ++ NPFQ P P E A +P P
Sbjct: 1 MAQSRDGGNPFAEPSELDNPFQPP-----------------PAYEPPAPAPLPPPSAPSL 43
Query: 299 SQPAVLQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXXXQNT-VANL 466
L P+ EP EEL+ Q+ +
Sbjct: 44 QPSRKLSPT-EPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAALGGT 102
Query: 467 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 646
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L LN LACLA
Sbjct: 103 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLACLAS 162
Query: 647 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYI 826
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+ Q +++
Sbjct: 163 FCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDVLFV 222
Query: 827 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 1006
+Q +GIP G SGWI+AL K + AVS++M++VA FT AVL + +LKR+HSLYRRTG
Sbjct: 223 LQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTG 282
Query: 1007 ASFQQAQEEFSQGIFSS 1057
ASFQ+AQ+EF+ G+FS+
Sbjct: 283 ASFQKAQQEFAAGVFSN 299
>ref|NP_620417.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 196 bits (497), Expect = 4e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|NP_001171583.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 196 bits (497), Expect = 4e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|NP_001171582.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 196 bits (497), Expect = 4e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|NP_524558.1| secretory carrier-associated membrane protein 4 [Homo sapiens].
Length = 229
Score = 181 bits (460), Expect = 8e-46
Identities = 78/191 (40%), Positives = 124/191 (64%)
Frame = +2
Query: 473 RENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFL 652
+ENN+PPLP + P+KPCFYQ+FS EIP ++Q + K +Y LWM + TL +NL+ACLAW++
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLAWWI 63
Query: 653 VDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQ 832
S G +FGL+ +W ++FTPC ++CW+RP+YKAFR+D+ Q + +IQ
Sbjct: 64 GGGS-GTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTVIQ 122
Query: 833 LVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGAS 1012
+G G GW++A+ + +++M++ A F++ A + + +VH +YR G S
Sbjct: 123 AIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAGGS 182
Query: 1013 FQQAQEEFSQG 1045
FQ+AQ E++ G
Sbjct: 183 FQKAQTEWNTG 193
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,111,291
Number of extensions: 1172425
Number of successful extensions: 5065
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5049
Number of HSP's successfully gapped: 8
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_073724.1| secretory carrier-associated membrane protein 2... 489 e-138
Alignment gi|NP_083429.1| secretory carrier-associated membrane protein 1... 306 2e-83
Alignment gi|NP_036016.2| secretory carrier-associated membrane protein 3... 245 5e-65
Alignment gi|NP_064666.1| secretory carrier-associated membrane protein 5... 196 3e-50
Alignment gi|NP_062521.1| secretory carrier-associated membrane protein 4... 186 2e-47
>ref|NP_073724.1| secretory carrier-associated membrane protein 2 [Mus musculus].
Length = 329
Score = 489 bits (1260), Expect = e-138
Identities = 242/328 (73%), Positives = 256/328 (78%), Gaps = 1/328 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQ GLAEFNPFSETNAATTVP TQ PGPSQP
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQSGLAEFNPFSETNAATTVPATQAPGPSQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD QNT ANLHVR+NNW
Sbjct: 61 AVLQPSVEPAQPTPQAVAAAAQAGLLRQQEELDRKAAELERKERELQNTAANLHVRDNNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLP WCP+KPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWF D +
Sbjct: 121 PPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFTSDAAN 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVGIP 847
G FGLSILWF+IFTPCAFLCWYRPIYKAFRSDN CQIGIY IQL+G+P
Sbjct: 181 GTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYFIQLIGLP 240
Query: 848 SLGDSGWIAALSTLKE-DLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQA 1024
+LG SGW+AALST+K LAV+IIMMVVAGFFTLCA LSLFLL+RVH+ YRRTGASFQQA
Sbjct: 241 NLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRTGASFQQA 300
Query: 1025 QEEFSQGIFSSRTFQXXXXXXXPRAFRG 1108
QEEFSQGIFSSRTF+ AF+G
Sbjct: 301 QEEFSQGIFSSRTFRGAASSAARGAFQG 328
>ref|NP_083429.1| secretory carrier-associated membrane protein 1 [Mus musculus].
Length = 338
Score = 306 bits (784), Expect = 2e-83
Identities = 148/317 (46%), Positives = 207/317 (65%), Gaps = 3/317 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAAT--TVPVTQLPGPS 301
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ +V + +P +
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGSVKMPNVPN-T 59
Query: 302 QPAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRE 478
QPA+++P+ E P EEL+ QN + H R+
Sbjct: 60 QPAIMKPTEEHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRK 117
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NNWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 118 NNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCLAWFCVD 177
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+SR VDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q
Sbjct: 178 SSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAA 237
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
G + G+ GWI++L+ L +++ V I+M+++A FT AV+SL + K+VH LYR TGASF+
Sbjct: 238 GFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFE 297
Query: 1019 QAQEEFSQGIFSSRTFQ 1069
+AQ+EF+ G+ S++T Q
Sbjct: 298 KAQQEFATGVMSNKTVQ 314
>ref|NP_036016.2| secretory carrier-associated membrane protein 3 [Mus musculus].
Length = 349
Score = 245 bits (625), Expect = 5e-65
Identities = 139/328 (42%), Positives = 187/328 (57%), Gaps = 16/328 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPV--- 280
+A S NPF D ++ NPFQDP+V Q + Q L +NPF E A P
Sbjct: 1 MAQSRDTGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAP 60
Query: 281 TQLPGPSQPAV-----LQPSVEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXX 436
LP PS P+V L P+ EP EEL+
Sbjct: 61 APLPPPSAPSVQSSRKLSPT-EPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRE 119
Query: 437 XXXQNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVT 613
Q+ + R+NNWPPLP +CP+KPCF+QD S EIP ++Q+ +YYLWM ++
Sbjct: 120 RELQHVALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLA 179
Query: 614 LFLNLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXX 793
L LN ACLA F VDT G FGLS+LW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 180 LLLNFFACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFF 239
Query: 794 XXXXCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLL 973
Q +++Q +GIP G SGW+ AL + AV+++M++VA FT AVL + +L
Sbjct: 240 FIFFVQDVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLFTGIAVLGIVML 299
Query: 974 KRVHSLYRRTGASFQQAQEEFSQGIFSS 1057
KR+HSLYR+TGASFQ+AQ+EF+ G+FS+
Sbjct: 300 KRIHSLYRQTGASFQKAQQEFAAGVFSN 327
>ref|NP_064666.1| secretory carrier-associated membrane protein 5 [Mus musculus].
Length = 235
Score = 196 bits (498), Expect = 3e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|NP_062521.1| secretory carrier-associated membrane protein 4 [Mus musculus].
Length = 230
Score = 186 bits (473), Expect = 2e-47
Identities = 83/191 (43%), Positives = 125/191 (65%)
Frame = +2
Query: 473 RENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFL 652
+ENN+PPLP + P+KPCFYQDFS EIP ++Q + K +Y LWM + TL +NL+ACLAW++
Sbjct: 4 KENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLVACLAWWI 63
Query: 653 VDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQ 832
+ G +FGL++LW V+FTPC+++CW+RP YKAFR+D+ Q + +IQ
Sbjct: 64 AGGA-GANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVLTVIQ 122
Query: 833 LVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGAS 1012
+G G GW+AA+ + +++M+V A F+L A++ + +VH +YR G S
Sbjct: 123 AIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRGAGGS 182
Query: 1013 FQQAQEEFSQG 1045
Q+AQ E+S G
Sbjct: 183 LQKAQTEWSAG 193
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,429,590
Number of extensions: 979234
Number of successful extensions: 4109
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4093
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230421.1| secretory carrier-associated membrane protei... 543 e-155
Alignment gi|NP_999410.1| secretory carrier-associated membrane protein 1... 306 1e-83
Alignment gi|NP_001172098.1| secretory carrier membrane protein 3 [Sus sc... 258 4e-69
Alignment gi|XP_001924607.1| PREDICTED: secretory carrier-associated memb... 195 4e-50
Alignment gi|XP_003361661.1| PREDICTED: secretory carrier-associated memb... 169 3e-42
Alignment gi|XP_003355196.1| PREDICTED: secretory carrier-associated memb... 88 1e-17
>ref|NP_001230421.1| secretory carrier-associated membrane protein 2 [Sus scrofa].
Length = 328
Score = 543 bits (1398), Expect = e-155
Identities = 272/327 (83%), Positives = 273/327 (83%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 307
MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPSQP 60
Query: 308 AVLQPSVEPXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNW 487
AVLQPSVEP EELD QNTVANLHVRENNW
Sbjct: 61 AVLQPSVEPTQPTPQAVASAAQASLLRQQEELDRKAAELERKERELQNTVANLHVRENNW 120
Query: 488 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 667
PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR
Sbjct: 121 PPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSR 180
Query: 668 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVGIP 847
GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDN CQIGIYIIQLVGIP
Sbjct: 181 GVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIP 240
Query: 848 SLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ 1027
SLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ
Sbjct: 241 SLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQAQ 300
Query: 1028 EEFSQGIFSSRTFQXXXXXXXPRAFRG 1108
EEFSQGIFSSRTFQ AF+G
Sbjct: 301 EEFSQGIFSSRTFQSAASSAARGAFQG 327
>ref|NP_999410.1| secretory carrier-associated membrane protein 1 [Sus scrofa].
Length = 338
Score = 306 bits (785), Expect = 1e-83
Identities = 150/316 (47%), Positives = 203/316 (64%), Gaps = 2/316 (0%)
Frame = +2
Query: 128 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPS-Q 304
MS FD+NPFADP NPF+DPSVTQ+T GL E+NPFS++ V PS Q
Sbjct: 1 MSDFDSNPFADPDLNNPFKDPSVTQVTRNVPPGLDEYNPFSDSRTPPPGNVKMPNVPSTQ 60
Query: 305 PAVLQPSVE-PXXXXXXXXXXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVREN 481
PA+++P+ E P EEL+ QN + H R+N
Sbjct: 61 PAIMKPTEEHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRKN 118
Query: 482 NWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDT 661
NWPPLP P+ PCFYQDFS +IP ++Q+ K++YYLWM H+VTLFLN+ CLAWF VD
Sbjct: 119 NWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCLAWFCVDP 178
Query: 662 SRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLVG 841
SRGVDFGLSILWF++FTPC+F+CWYRP+Y AFRSD+ CQ ++++Q G
Sbjct: 179 SRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAVHVLQAAG 238
Query: 842 IPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQQ 1021
+ G+ GWI++L+ L + + V I+M+++A FT AV+SL + K+VH LYR TGASF++
Sbjct: 239 FHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEK 298
Query: 1022 AQEEFSQGIFSSRTFQ 1069
AQ+EF+ G+ S++T Q
Sbjct: 299 AQQEFATGVMSNKTVQ 314
>ref|NP_001172098.1| secretory carrier membrane protein 3 [Sus scrofa].
Length = 347
Score = 258 bits (659), Expect = 4e-69
Identities = 141/325 (43%), Positives = 191/325 (58%), Gaps = 13/325 (4%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPVTQL 289
+A S NPFA+P ++ NPFQDP+V Q +PQ L +NPF E + P
Sbjct: 1 MAQSRDGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVP 60
Query: 290 PGPSQPAVLQPS-----VEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXXX 445
P A LQ S EP EEL+
Sbjct: 61 VAPPSAAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRREREL 120
Query: 446 QNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFL 622
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM ++ L L
Sbjct: 121 QHAALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLL 180
Query: 623 NLLACLAWFLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXX 802
N LACLA F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKAFRSD+
Sbjct: 181 NFLACLASFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIF 240
Query: 803 XCQIGIYIIQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRV 982
Q +Y++Q +GIP G SGWI+AL + + AV+++M++VA FFT AVL + +LKR+
Sbjct: 241 FVQDVLYVLQAIGIPGWGFSGWISALMLVNTNAAVAVLMLLVALFFTGIAVLGIVMLKRI 300
Query: 983 HSLYRRTGASFQQAQEEFSQGIFSS 1057
HSLYRRTGASFQ+AQ+EF+ G+FS+
Sbjct: 301 HSLYRRTGASFQKAQQEFAAGVFSN 325
>ref|XP_001924607.1| PREDICTED: secretory carrier-associated membrane protein 5-like [Sus
scrofa].
Length = 235
Score = 195 bits (495), Expect = 4e-50
Identities = 89/193 (46%), Positives = 126/193 (65%)
Frame = +2
Query: 479 NNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVD 658
NN+PPLP + P+KPCFYQDF +IP + + K LYYLWML+SVTL +NL+ CLAW L+
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAW-LIG 64
Query: 659 TSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNXXXXXXXXXXXXCQIGIYIIQLV 838
+FGL+ LW ++FTPC+++CW+RPIYKAF++D+ Q+ I IIQ V
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 839 GIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTGASFQ 1018
GIP G GWIA +S ++ +++M++ FT+ AV S L VH YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1019 QAQEEFSQGIFSS 1057
+AQEE++ G + +
Sbjct: 185 KAQEEWTTGAWKN 197
>ref|XP_003361661.1| PREDICTED: secretory carrier-associated membrane protein 1-like,
partial [Sus scrofa].
Length = 229
Score = 169 bits (427), Expect = 3e-42
Identities = 90/199 (45%), Positives = 115/199 (57%), Gaps = 8/199 (4%)
Frame = +2
Query: 185 DPSVTQLTNAPQGGLAEFNPFSETNAATTVPVTQLPGPS-QPAVLQPSVE-PXXXXXXXX 358
DPSVTQ+T GL E+NPFS++ V PS QPA+++P+ E P
Sbjct: 33 DPSVTQVTRNVPPGLDEYNPFSDSRTPPPGNVKMPNVPSTQPAIMKPTEEHPAYTQIAKE 92
Query: 359 XXXXXXXXXXXXEELDXXXXXXXXXXXXXQNTVANLHVRENNWPPLPIWCPIKPCFYQ-- 532
EEL+ QN + H R+NNWPPLP P+ PCFYQ
Sbjct: 93 HALAQAELLKRQEELERKAAELDRREREMQNL--SQHGRKNNWPPLPGNFPVGPCFYQYF 150
Query: 533 ----DFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFLVDTSRGVDFGLSILWF 700
DFS +IP ++Q+ K++YYLWM H+VTLFLN+ VD SRGVDFGLSILWF
Sbjct: 151 SVXQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGXXXXXCVDPSRGVDFGLSILWF 210
Query: 701 VIFTPCAFLCWYRPIYKAF 757
++FTPC+F+CWYRP+Y AF
Sbjct: 211 LLFTPCSFVCWYRPLYGAF 229
>ref|XP_003355196.1| PREDICTED: secretory carrier-associated membrane protein 3-like
[Sus scrofa].
Length = 197
Score = 87.8 bits (216), Expect = 1e-17
Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 13/172 (7%)
Frame = +2
Query: 122 IAMSAFDTNPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFS--ETNAATTVPVTQL 289
+A S NPFA+P ++ NPFQDP+V Q +PQ L +NPF E + P
Sbjct: 1 MAQSRDGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVP 60
Query: 290 PGPSQPAVLQPS-----VEPXXXXXXXXXXXXXXXXXXXX---EELDXXXXXXXXXXXXX 445
P A LQ S EP EEL+
Sbjct: 61 VAPPSAAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRREREL 120
Query: 446 QNT-VANLHVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWM 598
Q+ + R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM
Sbjct: 121 QHAALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 172
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,311,062
Number of extensions: 756608
Number of successful extensions: 3457
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3447
Number of HSP's successfully gapped: 6
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002728
(1108 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 367 9e-99
>Sscrofa_Chr07
|| Length = 134764511
Score = 367 bits (185), Expect = 9e-99
Identities = 185/185 (100%)
Strand = Plus / Plus
Query: 1 tgctgcgcctgcgccagaacggctgcctcgctcccggaagtggagggtctgcaagaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63361065 tgctgcgcctgcgccagaacggctgcctcgctcccggaagtggagggtctgcaagaagag 63361124
Query: 61 caccgctgggtctgggtgccaagaggcagaaacgctcgcggagctagcccgttggacccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63361125 caccgctgggtctgggtgccaagaggcagaaacgctcgcggagctagcccgttggacccc 63361184
Query: 121 gatcgccatgtcggccttcgacaccaaccccttcgcggacccagtggacgtaaacccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63361185 gatcgccatgtcggccttcgacaccaaccccttcgcggacccagtggacgtaaacccttt 63361244
Query: 181 ccagg 185
|||||
Sbjct: 63361245 ccagg 63361249
Score = 321 bits (162), Expect = 5e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 600 tgcattcagtgactctgtttctgaacctgcttgcctgcctggcctggttcttagttgaca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63379062 tgcattcagtgactctgtttctgaacctgcttgcctgcctggcctggttcttagttgaca 63379121
Query: 660 ccagcaggggagtagactttggcctctcgatcctgtggtttgtgatcttcaccccctgtg 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63379122 ccagcaggggagtagactttggcctctcgatcctgtggtttgtgatcttcaccccctgtg 63379181
Query: 720 ccttcctctgttggtaccgacccatctataaggcctttaggt 761
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63379182 ccttcctctgttggtaccgacccatctataaggcctttaggt 63379223
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 470 gtgagagagaacaactggccacccctgcccatatggtgccccatcaaaccctgcttctat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63378252 gtgagagagaacaactggccacccctgcccatatggtgccccatcaaaccctgcttctat 63378311
Query: 530 caggatttctccacagagatccctgctgactaccagcggatatgcaagatgctctactat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63378312 caggatttctccacagagatccctgctgactaccagcggatatgcaagatgctctactat 63378371
Query: 590 ctctggatgt 599
||||||||||
Sbjct: 63378372 ctctggatgt 63378381
Score = 244 bits (123), Expect = 9e-62
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 859 cagtggttggatcgcagccctgtccacactgaaggaagacttggccgtgtcaatcatcat 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63385895 cagtggttggatcgcagccctgtccacactgaaggaagacttggccgtgtcaatcatcat 63385954
Query: 919 gatggtggtggctggcttcttcaccctctgtgccgtgctctcactctttctcctgaagcg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63385955 gatggtggtggctggcttcttcaccctctgtgccgtgctctcactctttctcctgaagcg 63386014
Query: 979 ggt 981
|||
Sbjct: 63386015 ggt 63386017
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 349 ccaggctgtggcctctgcagctcaggcaagcctgctccggcagcaggaagaactggacag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63377597 ccaggctgtggcctctgcagctcaggcaagcctgctccggcagcaggaagaactggacag 63377656
Query: 409 aaaagcggctgagctggaacgcaaggagcgggagctgcagaacactgtggccaacttaca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63377657 aaaagcggctgagctggaacgcaaggagcgggagctgcagaacactgtggccaacttaca 63377716
Query: 469 tg 470
||
Sbjct: 63377717 tg 63377718
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 979 ggttcactccctgtaccgccggactggggccagcttccagcaggcccaagaagagttttc 1038
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 63386219 ggttcactccctgtaccgccggactggggccagcttccagcaggcccaagaggagttttc 63386278
Query: 1039 ccagggcatcttcagcagcaggaccttccagagcgccgcctcatctgctgccc 1091
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63386279 ccagggcatcttcagcagcaggaccttccagagcgccgcctcatctgctgccc 63386331
Score = 202 bits (102), Expect = 3e-49
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 252 agacaaatgcagcgacaacggttcctgtcacacagcttcccgggccctcgcagccagcag 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63375313 agacaaatgcagcgacaacggttcctgtcacacagcttcccgggccctcgcagccagcag 63375372
Query: 312 ttctccagccctcagtagagccaactcagccaaccccccagg 353
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63375373 ttctccagccctcagtagagccaactcagccaaccccccagg 63375414
Score = 165 bits (83), Expect = 6e-38
Identities = 97/104 (93%)
Strand = Plus / Plus
Query: 758 aggtccgacaactccttcagcttcttcgtgttcttctttgtgnnnnnnngtcaaataggg 817
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 63380902 aggtccgacaactccttcagcttcttcgtgttcttctttgtgtttttttgtcaaataggg 63380961
Query: 818 atctacatcatccagttggtcggcatccctagcttgggggacag 861
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63380962 atctacatcatccagttggtcggcatccctagcttgggggacag 63381005
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 183 aggatccctctgtgacccagctgaccaatgctccacaaggaggcctggctgaattcaacc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63374819 aggatccctctgtgacccagctgaccaatgctccacaaggaggcctggctgaattcaacc 63374878
Query: 243 ccttctccgag 253
|||||||||||
Sbjct: 63374879 ccttctccgag 63374889
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,155,381
Number of extensions: 183
Number of successful extensions: 183
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 9
Length of query: 1108
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1087
Effective length of database: 2,808,413,156
Effective search space: 3052745100572
Effective search space used: 3052745100572
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)