Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069640.1| MARCKS-related protein [Bos taurus]. 243 4e-64
Alignment gi|NP_001069744.1| myristoylated alanine-rich C-kinase substrat... 52 2e-06
>ref|NP_001069640.1| MARCKS-related protein [Bos taurus].
Length = 198
Score = 243 bits (619), Expect = 4e-64
Identities = 132/199 (66%), Positives = 132/199 (66%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVT EEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTAEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNGTEEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPP Q RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGEI AC EEGTAQEGKA ATPESQEPQ DT EEAGPQA E
Sbjct: 121 PTEEEQEQGEISACGEEGTAQEGKAAATPESQEPQAKGAEASAAAKGGDT-EEAGPQAAE 179
Query: 756 PSTPLGPESGPTPASEQNE 812
PSTP GPES P PASEQNE
Sbjct: 180 PSTPSGPESDPAPASEQNE 198
>ref|NP_001069744.1| myristoylated alanine-rich C-kinase substrate [Bos taurus].
Length = 335
Score = 51.6 bits (122), Expect = 2e-06
Identities = 32/76 (42%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 MGSQSSK-APRGDVTTEE----AAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXX 380
MG+Q SK A +G+ T E A +SP+K NGQENGHVK NGD SP
Sbjct: 1 MGAQFSKTAAKGEATAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQA 60
Query: 381 XXXXXXXDAIEPAPPG 428
D EPA G
Sbjct: 61 NGSAPAADKEEPAAAG 76
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,152,487
Number of extensions: 1723619
Number of successful extensions: 10126
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10064
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,174,046
Effective search space: 5244397020
Effective search space used: 5244397020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854637.1| PREDICTED: similar to MARCKS-related protein (M... 253 3e-67
Alignment gi|XP_855030.1| PREDICTED: similar to MARCKS-related protein (M... 144 2e-34
Alignment gi|XP_855257.1| PREDICTED: similar to Myristoylated alanine-ric... 50 7e-06
>ref|XP_854637.1| PREDICTED: similar to MARCKS-related protein (Macrophage
myristoylated alanine-rich C kinase substrate)
(Mac-MARCKS) (MacMARCKS) [Canis familiaris].
Length = 199
Score = 253 bits (646), Expect = 3e-67
Identities = 134/199 (67%), Positives = 134/199 (67%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVT EEAAGASPAK NGQENGHVKSNGDLSPKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTEEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPP Q RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPSQGAEVKGDAPAKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGEIGAC EEGTAQEGKA ATPESQEPQ DTEEEAGPQA E
Sbjct: 121 PTEEEQEQGEIGACGEEGTAQEGKAAATPESQEPQAKGAEASAASKGGDTEEEAGPQAAE 180
Query: 756 PSTPLGPESGPTPASEQNE 812
PSTP GPESGPTPA EQNE
Sbjct: 181 PSTPSGPESGPTPAGEQNE 199
>ref|XP_855030.1| PREDICTED: similar to MARCKS-related protein (Macrophage
myristoylated alanine-rich C kinase substrate)
(Mac-MARCKS) (MacMARCKS) [Canis familiaris].
Length = 163
Score = 144 bits (364), Expect = 2e-34
Identities = 84/158 (53%), Positives = 85/158 (53%)
Frame = +3
Query: 339 PKGEGESPPVNXXXXXXXXXXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 518
PK + PP N DAIEPAPP Q
Sbjct: 6 PKVKRSRPPRNETEEAAGAIGDAIEPAPPSQGAEVKGDAPAKETPKKKKKFSFKKPFKLS 65
Query: 519 XXXXXRNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXX 698
RNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTAQ GKA ATPESQEPQ
Sbjct: 66 GLSFKRNRKEGGGDSSASSPTEEEQEQGEIGACSEEGTAQVGKAAATPESQEPQAKGAEA 125
Query: 699 XXXXXXXDTEEEAGPQATEPSTPLGPESGPTPASEQNE 812
DTEEEA QA E S P PESGPTPA EQNE
Sbjct: 126 SAASKGGDTEEEAELQAAELSIPSRPESGPTPAGEQNE 163
>ref|XP_855257.1| PREDICTED: similar to Myristoylated alanine-rich C-kinase substrate
(MARCKS) (Protein kinase C substrate 80 kDa protein)
[Canis familiaris].
Length = 346
Score = 49.7 bits (117), Expect = 7e-06
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 MGSQSSK-APRGDVTTEE----AAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXX 380
MG+Q SK A +G+ E A +SP+K NGQENGHVK NGD SP
Sbjct: 1 MGAQFSKTAAKGEAAAERPGDAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQA 60
Query: 381 XXXXXXXDAIEPAPPG 428
D EPA G
Sbjct: 61 NGSAPAADKEEPAAAG 76
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,810,481
Number of extensions: 1776785
Number of successful extensions: 10993
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10901
Number of HSP's successfully gapped: 3
Length of query: 476
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 369
Effective length of database: 15,307,552
Effective search space: 5648486688
Effective search space used: 5648486688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075385.1| MARCKS-related protein [Homo sapiens]. 244 2e-64
Alignment gi|NP_002347.5| myristoylated alanine-rich C-kinase substrate [... 50 5e-06
>ref|NP_075385.1| MARCKS-related protein [Homo sapiens].
Length = 195
Score = 244 bits (622), Expect = 2e-64
Identities = 134/200 (67%), Positives = 136/200 (68%), Gaps = 1/200 (0%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVT EEAAGASPAK NGQENGHVKSNGDLSPKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVKSNGDLSPKGEGESPPVNGTDEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPP Q RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPSQGAEAKGEVPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGEIGACS+EGTAQEGKA ATPESQEPQ +EEEAGPQATE
Sbjct: 121 PTEEEQEQGEIGACSDEGTAQEGKAAATPESQEPQAKGAEASAA-----SEEEAGPQATE 175
Query: 756 PSTPLGPESGPTPAS-EQNE 812
PSTP GPESGPTPAS EQNE
Sbjct: 176 PSTPSGPESGPTPASAEQNE 195
>ref|NP_002347.5| myristoylated alanine-rich C-kinase substrate [Homo sapiens].
Length = 332
Score = 50.1 bits (118), Expect = 5e-06
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +3
Query: 216 MGSQSSK-APRGDVTTEE----AAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXX 380
MG+Q SK A +G+ E A +SP+K NGQENGHVK NGD SP
Sbjct: 1 MGAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQA 60
Query: 381 XXXXXXXDAIEPAPPG 428
D EPA G
Sbjct: 61 NGSAPAADKEEPAAAG 76
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,213,013
Number of extensions: 1727090
Number of successful extensions: 9865
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9785
Number of HSP's successfully gapped: 3
Length of query: 476
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 370
Effective length of database: 14,802,980
Effective search space: 5477102600
Effective search space used: 5477102600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034937.1| MARCKS-related protein [Mus musculus]. 244 9e-65
Alignment gi|NP_032564.1| myristoylated alanine-rich C-kinase substrate [... 51 2e-06
>ref|NP_034937.1| MARCKS-related protein [Mus musculus].
Length = 200
Score = 244 bits (624), Expect = 9e-65
Identities = 131/200 (65%), Positives = 135/200 (67%), Gaps = 1/200 (0%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVT EEAAGASPAK NGQENGHV+SNGDL+PKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTAEEAAGASPAKANGQENGHVRSNGDLTPKGEGESPPVNGTDEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPP Q RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPSQEAEAKGEVAPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGE+ ACS+EGTAQEGKA ATPESQEPQ DTEEEAGPQA E
Sbjct: 121 PTEEEQEQGEMSACSDEGTAQEGKAAATPESQEPQAKGAEASAASKEGDTEEEAGPQAAE 180
Query: 756 PSTPLGPESGPTPAS-EQNE 812
PSTP GPESGPTPAS EQNE
Sbjct: 181 PSTPSGPESGPTPASAEQNE 200
>ref|NP_032564.1| myristoylated alanine-rich C-kinase substrate [Mus musculus].
Length = 309
Score = 51.2 bits (121), Expect = 2e-06
Identities = 53/202 (26%), Positives = 67/202 (33%), Gaps = 6/202 (2%)
Frame = +3
Query: 216 MGSQSSK-APRGDVTTEE----AAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXX 380
MG+Q SK A +G+ T E A +SP+K NGQENGHVK NGD SP
Sbjct: 1 MGAQFSKTAAKGEATAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQA 60
Query: 381 XXXXXXXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGD 560
D EPA
Sbjct: 61 NGSAPAADKEEPA----------------------------------------------- 73
Query: 561 SSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAG 740
S S+ T E+ E A +E G K A E EP E G
Sbjct: 74 -SGSAATPAAAEKDEAAAATEPGAGAADKEAAEAEPAEPS------------SPAAEAEG 120
Query: 741 PQATEPSTPLGPE-SGPTPASE 803
A+ S+P + + P+P+SE
Sbjct: 121 ASASSTSSPKAEDGAAPSPSSE 142
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,434,587
Number of extensions: 1410317
Number of successful extensions: 7804
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7735
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 371
Effective length of database: 12,463,779
Effective search space: 4624062009
Effective search space used: 4624062009
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356328.1| PREDICTED: MARCKS-related protein-like isofo... 268 7e-72
Alignment gi|XP_003127805.1| PREDICTED: MARCKS-related protein-like isofo... 268 7e-72
Alignment gi|XP_003356329.1| PREDICTED: MARCKS-related protein-like isofo... 259 2e-69
Alignment gi|XP_003127806.1| PREDICTED: MARCKS-related protein-like isofo... 259 2e-69
Alignment gi|XP_003121421.2| PREDICTED: LOW QUALITY PROTEIN: myristoylate... 54 3e-07
>ref|XP_003356328.1| PREDICTED: MARCKS-related protein-like isoform 1 [Sus scrofa].
Length = 199
Score = 268 bits (684), Expect = 7e-72
Identities = 142/199 (71%), Positives = 142/199 (71%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNETEEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPPGQ RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPGQGAEAKGEAPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQ DTEEEAGPQATE
Sbjct: 121 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQAKGAEAGAASKGGDTEEEAGPQATE 180
Query: 756 PSTPLGPESGPTPASEQNE 812
PSTPLGPESGPTPASEQNE
Sbjct: 181 PSTPLGPESGPTPASEQNE 199
>ref|XP_003127805.1| PREDICTED: MARCKS-related protein-like isoform 1 [Sus scrofa].
Length = 199
Score = 268 bits (684), Expect = 7e-72
Identities = 142/199 (71%), Positives = 142/199 (71%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXXXXXXX 395
MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVN
Sbjct: 1 MGSQSSKAPRGDVTTEEAAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNETEEAAGA 60
Query: 396 XXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGDSSASS 575
DAIEPAPPGQ RNRKEGGGDSSASS
Sbjct: 61 TGDAIEPAPPGQGAEAKGEAPPKETPKKKKKFSFKKPFKLSGLSFKRNRKEGGGDSSASS 120
Query: 576 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAGPQATE 755
PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQ DTEEEAGPQATE
Sbjct: 121 PTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQAKGAEAGAASKGGDTEEEAGPQATE 180
Query: 756 PSTPLGPESGPTPASEQNE 812
PSTPLGPESGPTPASEQNE
Sbjct: 181 PSTPLGPESGPTPASEQNE 199
>ref|XP_003356329.1| PREDICTED: MARCKS-related protein-like isoform 2 [Sus scrofa].
Length = 209
Score = 259 bits (663), Expect = 2e-69
Identities = 142/209 (67%), Positives = 142/209 (67%), Gaps = 10/209 (4%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQ----------ENGHVKSNGDLSPKGEGESPP 365
MGSQSSKAPRGDVTTEEAAGASPAKVNGQ ENGHVKSNGDLSPKGEGESPP
Sbjct: 1 MGSQSSKAPRGDVTTEEAAGASPAKVNGQGGAAAWGEPEENGHVKSNGDLSPKGEGESPP 60
Query: 366 VNXXXXXXXXXXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRK 545
VN DAIEPAPPGQ RNRK
Sbjct: 61 VNETEEAAGATGDAIEPAPPGQGAEAKGEAPPKETPKKKKKFSFKKPFKLSGLSFKRNRK 120
Query: 546 EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDT 725
EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQ DT
Sbjct: 121 EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQAKGAEAGAASKGGDT 180
Query: 726 EEEAGPQATEPSTPLGPESGPTPASEQNE 812
EEEAGPQATEPSTPLGPESGPTPASEQNE
Sbjct: 181 EEEAGPQATEPSTPLGPESGPTPASEQNE 209
>ref|XP_003127806.1| PREDICTED: MARCKS-related protein-like isoform 2 [Sus scrofa].
Length = 209
Score = 259 bits (663), Expect = 2e-69
Identities = 142/209 (67%), Positives = 142/209 (67%), Gaps = 10/209 (4%)
Frame = +3
Query: 216 MGSQSSKAPRGDVTTEEAAGASPAKVNGQ----------ENGHVKSNGDLSPKGEGESPP 365
MGSQSSKAPRGDVTTEEAAGASPAKVNGQ ENGHVKSNGDLSPKGEGESPP
Sbjct: 1 MGSQSSKAPRGDVTTEEAAGASPAKVNGQGGAAAWGEPEENGHVKSNGDLSPKGEGESPP 60
Query: 366 VNXXXXXXXXXXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRK 545
VN DAIEPAPPGQ RNRK
Sbjct: 61 VNETEEAAGATGDAIEPAPPGQGAEAKGEAPPKETPKKKKKFSFKKPFKLSGLSFKRNRK 120
Query: 546 EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDT 725
EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQ DT
Sbjct: 121 EGGGDSSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQAKGAEAGAASKGGDT 180
Query: 726 EEEAGPQATEPSTPLGPESGPTPASEQNE 812
EEEAGPQATEPSTPLGPESGPTPASEQNE
Sbjct: 181 EEEAGPQATEPSTPLGPESGPTPASEQNE 209
>ref|XP_003121421.2| PREDICTED: LOW QUALITY PROTEIN: myristoylated alanine-rich C-kinase
substrate-like [Sus scrofa].
Length = 332
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/204 (28%), Positives = 72/204 (35%), Gaps = 5/204 (2%)
Frame = +3
Query: 216 MGSQSSK-APRGDVTTEE----AAGASPAKVNGQENGHVKSNGDLSPKGEGESPPVNXXX 380
MG+Q SK A +G+ E A +SP+K NGQENGHVK NGD SP
Sbjct: 1 MGAQFSKTASKGEAAGERPGEAAVASSPSKANGQENGHVKVNGDASPAAAEPGAKEELQA 60
Query: 381 XXXXXXXDAIEPAPPGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNRKEGGGD 560
D EPAP G
Sbjct: 61 NGSAPAADKEEPAPAG-------------------------------------------- 76
Query: 561 SSASSPTEEEQEQGEIGACSEEGTAQEGKAVATPESQEPQXXXXXXXXXXXXXDTEEEAG 740
S A+SP E+++ A T+ E +A A E+ EP E EA
Sbjct: 77 SGAASPVGAEKDEAAATAPEAGATSAEKEAPAEGEAAEP----------GSPTAAEGEAA 126
Query: 741 PQATEPSTPLGPESGPTPASEQNE 812
A+ S+P E G TP S NE
Sbjct: 127 SAASSTSSPKA-EDGATP-SPSNE 148
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,747,109
Number of extensions: 1122844
Number of successful extensions: 6544
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6490
Number of HSP's successfully gapped: 6
Length of query: 476
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 373
Effective length of database: 8,779,541
Effective search space: 3274768793
Effective search space used: 3274768793
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002730
(1430 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 2070 0.0
Sscrofa_Chr10 174 9e-41
>Sscrofa_Chr06
|| Length = 157765593
Score = 2070 bits (1044), Expect = 0.0
Identities = 1074/1084 (99%), Gaps = 2/1084 (0%)
Strand = Plus / Plus
Query: 300 caggagaacggccacgtgaaaagcaatggagacttatcccccaaaggtgaaggggagtcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667200 caggagaacggccacgtgaaaagcaatggagacttatcccccaaaggtgaaggggagtcg 82667259
Query: 360 ccccccgtgaacgaaacagaggaggcagccggggccactggcgatgccatcgagccagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667260 ccccccgtgaacgaaacagaggaggcagccggggccactggcgatgccatcgagccagca 82667319
Query: 420 ccccctggccagggggctgaggccaagggggaggnnnnnnnnaaggagacccccaagaag 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 82667320 ccccctggccagggggctgaggccaagggggaggccccccccaaggagacccccaagaag 82667379
Query: 480 aagaagaaattctctttcaagaagcctttcaaattgagtggcctgtccttcaagagaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667380 aagaagaaattctctttcaagaagcctttcaaattgagtggcctgtccttcaagagaaat 82667439
Query: 540 cggaaggagggtgggggcgattcgtctgcctcctcgcccacagaggaagagcaagagcag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667440 cggaaggagggtgggggcgattcgtctgcctcctcgcccacagaggaagagcaagagcag 82667499
Query: 600 ggggagatcggtgcctgcagcgaggaaggcactgcccaggaagggaaggctgttgccacc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667500 ggggagatcggtgcctgcagcgaggaaggcactgcccaggaagggaaggctgttgccacc 82667559
Query: 660 cctgagagccaggagccccaggccaaaggggcagaggctggtgctgcctccaagggcgga 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667560 cctgagagccaggagccccaggccaaaggggcagaggctggtgctgcctccaagggcgga 82667619
Query: 720 gacacagaagaagaggcagggccccaggccacagagccatccactcccttggggccggag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667620 gacacagaagaagaggcagggccccaggccacagagccatccactcccttggggccggag 82667679
Query: 780 agtggccctacaccagccagcgagcagaatgagtagctgggtgggggcaggtgggtgacc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667680 agtggccctacaccagccagcgagcagaatgagtagctgggtgggggcaggtgggtgacc 82667739
Query: 840 tctaagctgcaaaaactgtgctgtccttgtgaggtcactgcctggacctggtgccctggc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667740 tctaagctgcaaaaactgtgctgtccttgtgaggtcactgcctggacctggtgccctggc 82667799
Query: 900 tgccttcctgtgcccagaaaggaaggggctgttgccccctagccacgttccctctcctct 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667800 tgccttcctgtgcccagaaaggaaggggctgttgccccctagccacgttccctctcctct 82667859
Query: 960 ccctcctgtggattctcccatcatccatctggtcttcctcctaaggccagctgaaggtgg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667860 ccctcctgtggattctcccatcatccatctggtcttcctcctaaggccagctgaaggtgg 82667919
Query: 1020 tcccttgcagtctccccagttaggttagtgatgtgaaatgctcctgcccctggccctccc 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667920 tcccttgcagtctccccagttaggttagtgatgtgaaatgctcctgcccctggccctccc 82667979
Query: 1080 tccttccctgtccccacccatgcagaaggcagttgctggttttctcccccaattcttttc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82667980 tccttccctgtccccacccatgcagaaggcagttgctggttttctcccccaattcttttc 82668039
Query: 1140 caagtaggttttgtttattccccaaatccctgagccagatctgggggtgcctacactccc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82668040 caagtaggttttgtttattccccaaatccctgagccagatctgggggtgcctacactccc 82668099
Query: 1200 aaatcctgagtgtccagccttcccctgttgagtttctagtctctcgtgctgtgcctagtg 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82668100 aaatcctgagtgtccagccttcccctgttgagtttctagtctctcgtgctgtgcctagtg 82668159
Query: 1260 gcacctgggctggggaggacagagcccctgtctaggtttttataaatgtcttactcaagt 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82668160 gcacctgggctggggaggacagagcccctgtctaggtttttataaatgtcttactcaagt 82668219
Query: 1320 tcgaacctccagcttgtgaatcaactgtctcttttttgacttgggtaagc-agtattaag 1378
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 82668220 tcgaacctccagcttgtgaatcaactgtctcttttttgactt-ggtaagcaagtattaag 82668278
Query: 1379 cttt 1382
||||
Sbjct: 82668279 cttt 82668282
Score = 2070 bits (1044), Expect = 0.0
Identities = 1074/1084 (99%), Gaps = 2/1084 (0%)
Strand = Plus / Plus
Query: 300 caggagaacggccacgtgaaaagcaatggagacttatcccccaaaggtgaaggggagtcg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880602 caggagaacggccacgtgaaaagcaatggagacttatcccccaaaggtgaaggggagtcg 82880661
Query: 360 ccccccgtgaacgaaacagaggaggcagccggggccactggcgatgccatcgagccagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880662 ccccccgtgaacgaaacagaggaggcagccggggccactggcgatgccatcgagccagca 82880721
Query: 420 ccccctggccagggggctgaggccaagggggaggnnnnnnnnaaggagacccccaagaag 479
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 82880722 ccccctggccagggggctgaggccaagggggaggccccccccaaggagacccccaagaag 82880781
Query: 480 aagaagaaattctctttcaagaagcctttcaaattgagtggcctgtccttcaagagaaat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880782 aagaagaaattctctttcaagaagcctttcaaattgagtggcctgtccttcaagagaaat 82880841
Query: 540 cggaaggagggtgggggcgattcgtctgcctcctcgcccacagaggaagagcaagagcag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880842 cggaaggagggtgggggcgattcgtctgcctcctcgcccacagaggaagagcaagagcag 82880901
Query: 600 ggggagatcggtgcctgcagcgaggaaggcactgcccaggaagggaaggctgttgccacc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880902 ggggagatcggtgcctgcagcgaggaaggcactgcccaggaagggaaggctgttgccacc 82880961
Query: 660 cctgagagccaggagccccaggccaaaggggcagaggctggtgctgcctccaagggcgga 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82880962 cctgagagccaggagccccaggccaaaggggcagaggctggtgctgcctccaagggcgga 82881021
Query: 720 gacacagaagaagaggcagggccccaggccacagagccatccactcccttggggccggag 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881022 gacacagaagaagaggcagggccccaggccacagagccatccactcccttggggccggag 82881081
Query: 780 agtggccctacaccagccagcgagcagaatgagtagctgggtgggggcaggtgggtgacc 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881082 agtggccctacaccagccagcgagcagaatgagtagctgggtgggggcaggtgggtgacc 82881141
Query: 840 tctaagctgcaaaaactgtgctgtccttgtgaggtcactgcctggacctggtgccctggc 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881142 tctaagctgcaaaaactgtgctgtccttgtgaggtcactgcctggacctggtgccctggc 82881201
Query: 900 tgccttcctgtgcccagaaaggaaggggctgttgccccctagccacgttccctctcctct 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881202 tgccttcctgtgcccagaaaggaaggggctgttgccccctagccacgttccctctcctct 82881261
Query: 960 ccctcctgtggattctcccatcatccatctggtcttcctcctaaggccagctgaaggtgg 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881262 ccctcctgtggattctcccatcatccatctggtcttcctcctaaggccagctgaaggtgg 82881321
Query: 1020 tcccttgcagtctccccagttaggttagtgatgtgaaatgctcctgcccctggccctccc 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881322 tcccttgcagtctccccagttaggttagtgatgtgaaatgctcctgcccctggccctccc 82881381
Query: 1080 tccttccctgtccccacccatgcagaaggcagttgctggttttctcccccaattcttttc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881382 tccttccctgtccccacccatgcagaaggcagttgctggttttctcccccaattcttttc 82881441
Query: 1140 caagtaggttttgtttattccccaaatccctgagccagatctgggggtgcctacactccc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881442 caagtaggttttgtttattccccaaatccctgagccagatctgggggtgcctacactccc 82881501
Query: 1200 aaatcctgagtgtccagccttcccctgttgagtttctagtctctcgtgctgtgcctagtg 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881502 aaatcctgagtgtccagccttcccctgttgagtttctagtctctcgtgctgtgcctagtg 82881561
Query: 1260 gcacctgggctggggaggacagagcccctgtctaggtttttataaatgtcttactcaagt 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82881562 gcacctgggctggggaggacagagcccctgtctaggtttttataaatgtcttactcaagt 82881621
Query: 1320 tcgaacctccagcttgtgaatcaactgtctcttttttgacttgggtaagc-agtattaag 1378
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 82881622 tcgaacctccagcttgtgaatcaactgtctcttttttgactt-ggtaagcaagtattaag 82881680
Query: 1379 cttt 1382
||||
Sbjct: 82881681 cttt 82881684
Score = 398 bits (201), Expect = e-108
Identities = 613/748 (81%), Gaps = 43/748 (5%)
Strand = Plus / Minus
Query: 563 gtctgcctcctcgcccacagaggaagagcaagagcagggggagatcggtgcctgcagcga 622
|||| ||| ||| ||||||||||||||||| | |||||||||| || | ||||| ||
Sbjct: 25308207 gtctaccttctcacccacagaggaagagca---gaagggggagatgagtacatgcagtga 25308151
Query: 623 ggaaggcactgcccaggaagggaaggctgttgccacccctgagagccaggagccccaggc 682
|||||||||| |||||||| |||||||||||||||| | ||||| ||||||||||||| |
Sbjct: 25308150 ggaaggcactccccaggaaaggaaggctgttgccactcatgaga-ccaggagccccagac 25308092
Query: 683 caaaggggcagaggctggtgctgcctccaagggcggagacacagaagaagaggcagggcc 742
|||||||||||||||| |||||| ||||| ||| |||||||||| |||||| ||| ||
Sbjct: 25308091 caaaggggcagaggctagtgctgactccaggggaggagacacag---aagaggaaggacc 25308035
Query: 743 ccaggccacagagccatccactcccttggggccggagagtggccctacaccagccagcga 802
||||| |||||||||| ||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 25308034 tcaggctgcagagccatctactcccttggggctggagagtggccctacaccaatgagcaa 25307975
Query: 803 gcagaatgagtagctgggtgggggcaggtgggtgacctctaagctgcaaaaactgtgctg 862
||||| ||||||| || ||||||||| | ||||| ||| || |||||||||||||||||
Sbjct: 25307974 gcagagtgagtagtcggatgggggcagattggtgatctc-aaactgcaaaaactgtgctg 25307916
Query: 863 tccttgtgaggtcactgcctggacctggtgccctggctgccttcctgtgcccagaaagga 922
||||| ||| |||||||||||||| |||| |||| |||||||
Sbjct: 25307915 tccttctga-----------------ggtgccctggctgctttccagtgcttggaaagga 25307873
Query: 923 aggggctgttgccccctagccacgttccc--------tctcctctccctcctgtggattc 974
|||||||||||| |||| |||| ||||| ||||||||| ||||||||||||
Sbjct: 25307872 aggggctgttgcagcctatccacattccctctccacgtctcctctctctcctgtggattt 25307813
Query: 975 tcccatcatccatctggtcttcctcctaaggccagctgaaggtggtcccttgcagtctcc 1034
||||||| ||||||||||||| ||| ||||||||| |||||||| ||| | | | |||
Sbjct: 25307812 tcccatcttccatctggtctttctcttaaggccagttgaaggtgatcc--ttcgatttcc 25307755
Query: 1035 ccagttaggttagtgatgtgaaatgctcctgcccctggccctccctccttccctgtcccc 1094
| ||||||||| ||| ||||||||||||| ||||||| |||| |||| ||| ||
Sbjct: 25307754 caggttaggttaatgaagtgaaatgctccttcccctgg-----cctctttccttgtttcc 25307700
Query: 1095 acccatgcagaaggcagttgctggttttctcccccaattcttttccaagtaggttttgtt 1154
||||||||||| ||| ||||||| ||||| |||||||||||||||||| ||| ||| ||
Sbjct: 25307699 acccatgcagacggctattgctgg-tttcttccccaattcttttccaagcaggctttatt 25307641
Query: 1155 tattccccaaatccctgagccagatctgggggtgcctacactcccaaatcctgagtgtcc 1214
|| |||||||||||||||||||||| || ||||||||| ||||||||| ||| |||||||
Sbjct: 25307640 tactccccaaatccctgagccagatgtgagggtgcctaaactcccaaacccttagtgtcc 25307581
Query: 1215 agc--cttcccctgttgagtttctagtctctcgtgctgtgcctagtggcacctgggctgg 1272
||| ||||||||||||||||| |||||||| ||||||||| |||| |||| |||||
Sbjct: 25307580 agcctcttcccctgttgagtttttagtctcttgtgctgtgcttagtctcaccgaagctgg 25307521
Query: 1273 ggaggacagagcccctgtctaggttttt 1300
|||||||| ||| |||||||| |||||
Sbjct: 25307520 ggaggacactgcctctgtctagattttt 25307493
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 155 aactatcccctgcggcgcgagcccggggtggctccgggcgccccccagcagaacccccac 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82666259 aactatcccctgcggcgcgagcccggggtggctccgggcgccccccagcagaacccccac 82666318
Query: 215 catgggcagccagagctccaaggctccccggggcgacgtgaccaccgaggaggcagcagg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82666319 catgggcagccagagctccaaggctccccggggcgacgtgaccaccgaggaggcagcagg 82666378
Query: 275 cgcttcccccgctaaggttaacggacagg 303
|||||||||||||||||||||||||||||
Sbjct: 82666379 cgcttcccccgctaaggttaacggacagg 82666407
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 155 aactatcccctgcggcgcgagcccggggtggctccgggcgccccccagcagaacccccac 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82879661 aactatcccctgcggcgcgagcccggggtggctccgggcgccccccagcagaacccccac 82879720
Query: 215 catgggcagccagagctccaaggctccccggggcgacgtgaccaccgaggaggcagcagg 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82879721 catgggcagccagagctccaaggctccccggggcgacgtgaccaccgaggaggcagcagg 82879780
Query: 275 cgcttcccccgctaaggttaacggacagg 303
|||||||||||||||||||||||||||||
Sbjct: 82879781 cgcttcccccgctaaggttaacggacagg 82879809
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 15 ggcattctggcgcggagcagagaggcggcgggcgcagccagcgggtcgggcacggagcgg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82666119 ggcattctggcgcggagcagagaggcggcgggcgcagccagcgggtcgggcacggagcgg 82666178
Query: 75 gggtgcagtcggttt 89
|||||||||||||||
Sbjct: 82666179 gggtgcagtcggttt 82666193
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 15 ggcattctggcgcggagcagagaggcggcgggcgcagccagcgggtcgggcacggagcgg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82879521 ggcattctggcgcggagcagagaggcggcgggcgcagccagcgggtcgggcacggagcgg 82879580
Query: 75 gggtgcagtcggttt 89
|||||||||||||||
Sbjct: 82879581 gggtgcagtcggttt 82879595
Score = 109 bits (55), Expect = 4e-21
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Minus
Query: 1284 cccctgtctaggtttttataaatgtcttactcaagttcgaacctccagcttgtgaatcaa 1343
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 25307249 cccctgtctagatttttataaatgtcttactcaagttcaaacctttagcttgtgaatcaa 25307190
Query: 1344 ct--gtctcttttttgacttgg 1363
|| ||||||||||||||||||
Sbjct: 25307189 ctgagtctcttttttgacttgg 25307168
>Sscrofa_Chr10
|| Length = 79102373
Score = 174 bits (88), Expect = 9e-41
Identities = 268/328 (81%), Gaps = 17/328 (5%)
Strand = Plus / Minus
Query: 195 ccccccagcagaacccccaccatgggcagccagagctccaaggctccccgggg-cgacgt 253
|||||||||| ||| | ||||| |||||||||| ||||||||||| || |||| ||||
Sbjct: 47675708 ccccccagcaaaacgcacaccaggggcagccagtgctccaaggcttcctgggggcgacag 47675649
Query: 254 gaccaccgaggaggcagcaggcgcttcccccgctaaggttaacggacaggagaacggcca 313
|||||| |||||||||||||| ||||||||||||||||||||| | ||||||||| ||||
Sbjct: 47675648 gaccacggaggaggcagcaggagcttcccccgctaaggttaacagccaggagaacagcca 47675589
Query: 314 cgtgaaaagcaatggagacttatcccccaaaggtgaaggggagt---------cgccccc 364
|||||||||| |||| || | |||||||| ||||||||||| | | |||
Sbjct: 47675588 cgtgaaaagccgtggaaac--aaaccccaaagatgaaggggagttacataacccccaccc 47675531
Query: 365 cgtgaacgaaacagaggaggcagccggggccactggcgatgccatcgagccagcaccccc 424
||||| |||||||||| ||||||||||||||||||| |||||| || |||||| || |||
Sbjct: 47675530 cgtgagcgaaacagagcaggcagccggggccactggtgatgccctccagccagtactccc 47675471
Query: 425 tggccagggggctgaggccaagggggag--gnnnnnnnnaaggagacccccaagaagaag 482
| ||||||| ||||||||||| || ||| |||||||||||| ||||||
Sbjct: 47675470 tagccagggtgctgaggccaaaggagagcccccccacccaaggagaccccc---aagaag 47675414
Query: 483 aagaaattctctttcaagaagcctttca 510
||||||||||||||||||||| ||||||
Sbjct: 47675413 aagaaattctctttcaagaagtctttca 47675386
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,636,229
Number of extensions: 565
Number of successful extensions: 565
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 16
Length of query: 1430
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1409
Effective length of database: 2,808,413,156
Effective search space: 3957054136804
Effective search space used: 3957054136804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)