Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689245.1| PREDICTED: thioredoxin domain containing 15-... 454 e-127
Alignment gi|XP_602222.2| PREDICTED: thioredoxin domain containing 15-lik... 454 e-127
Alignment gi|NP_001030204.1| endoplasmic reticulum resident protein 44 pr... 52 9e-07
>ref|XP_002689245.1| PREDICTED: thioredoxin domain containing 15-like [Bos taurus].
Length = 403
Score = 454 bits (1167), Expect = e-127
Identities = 253/378 (66%), Positives = 265/378 (70%), Gaps = 5/378 (1%)
Frame = +2
Query: 248 MAPAEEAASGQDXXXXXXXXXXXLLPLPSCGGERASRGRAPFALRPGWCGRRPPRTMRXX 427
MAP+ AAS QD LLP PS GER SR AP ALRPG GR PPRTMR
Sbjct: 1 MAPSA-AASCQDGDAGPRPRSRPLLPQPSSAGERESRRCAPVALRPGCTGRCPPRTMRLI 59
Query: 428 XXXXXXXXXXXPPARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXX 598
PAR +E+AE R WSEEQPAYPFQVGAVY
Sbjct: 60 GWWQVLLWVLGSPARAEEIAEKRSHLWSEEQPAYPFQVGAVYMNEEVPSPDPVGQDPSAE 119
Query: 599 XXXXXXXXXXX-DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDS 775
+ +VMLSVIPG AED LSPE +E SRC+LRESLFSLD
Sbjct: 120 ETEAVLGLDADGNHMVMLSVIPGGAEDKLSPESSSGTCGAGG-EEGSRCNLRESLFSLDR 178
Query: 776 SGS-FXXXXXXXXXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNV 952
+G+ F VA+SDP P EDAN TESLK PKV CEERNV+GLENFTLKILN+
Sbjct: 179 AGARFSEREEEYYTEPDVAESDPTPTEDANTTESLKSPKVNCEERNVTGLENFTLKILNM 238
Query: 953 SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST 1132
SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST
Sbjct: 239 SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST 298
Query: 1133 RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVNSADHIGPLS 1312
RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVV AD IGPL
Sbjct: 299 RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADQIGPLP 358
Query: 1313 STLIKRVDWLLEFSLFFL 1366
STLIK VDWLL FSLFFL
Sbjct: 359 STLIKSVDWLLVFSLFFL 376
>ref|XP_602222.2| PREDICTED: thioredoxin domain containing 15-like [Bos taurus].
Length = 403
Score = 454 bits (1167), Expect = e-127
Identities = 253/378 (66%), Positives = 265/378 (70%), Gaps = 5/378 (1%)
Frame = +2
Query: 248 MAPAEEAASGQDXXXXXXXXXXXLLPLPSCGGERASRGRAPFALRPGWCGRRPPRTMRXX 427
MAP+ AAS QD LLP PS GER SR AP ALRPG GR PPRTMR
Sbjct: 1 MAPSA-AASCQDGDAGPRPRSRPLLPQPSSAGERESRRCAPVALRPGCTGRCPPRTMRLI 59
Query: 428 XXXXXXXXXXXPPARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXX 598
PAR +E+AE R WSEEQPAYPFQVGAVY
Sbjct: 60 GWWQVLLWVLGSPARAEEIAEKRSHLWSEEQPAYPFQVGAVYMNEEVPSPDPVGQDPSAE 119
Query: 599 XXXXXXXXXXX-DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDS 775
+ +VMLSVIPG AED LSPE +E SRC+LRESLFSLD
Sbjct: 120 ETEAVLGLDADGNHMVMLSVIPGGAEDKLSPESSSGTCGAGG-EEGSRCNLRESLFSLDR 178
Query: 776 SGS-FXXXXXXXXXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNV 952
+G+ F VA+SDP P EDAN TESLK PKV CEERNV+GLENFTLKILN+
Sbjct: 179 AGARFSEREEEYYTEPDVAESDPTPTEDANTTESLKSPKVNCEERNVTGLENFTLKILNM 238
Query: 953 SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST 1132
SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST
Sbjct: 239 SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLST 298
Query: 1133 RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVNSADHIGPLS 1312
RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVV AD IGPL
Sbjct: 299 RFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADQIGPLP 358
Query: 1313 STLIKRVDWLLEFSLFFL 1366
STLIK VDWLL FSLFFL
Sbjct: 359 STLIKSVDWLLVFSLFFL 376
>ref|NP_001030204.1| endoplasmic reticulum resident protein 44 precursor [Bos taurus].
Length = 406
Score = 52.4 bits (124), Expect = 9e-07
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Frame = +2
Query: 932 TLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFPALH--- 1090
T +I+++ + +D + N +D LV FY WCRFS L P F N + +P +
Sbjct: 28 TAEIISLDTENIDDIL-NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVV 86
Query: 1091 FLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 1249
F +D QHS ++ R+ P + LF+ M R R+++ L +I Q
Sbjct: 87 FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,937,390
Number of extensions: 1399251
Number of successful extensions: 5469
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5447
Number of HSP's successfully gapped: 5
Length of query: 456
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 350
Effective length of database: 14,174,046
Effective search space: 4960916100
Effective search space used: 4960916100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852413.1| PREDICTED: similar to disulfide isomerase [Cani... 386 e-107
Alignment gi|XP_532011.2| PREDICTED: similar to Thioredoxin domain contai... 51 2e-06
>ref|XP_852413.1| PREDICTED: similar to disulfide isomerase [Canis familiaris].
Length = 348
Score = 386 bits (991), Expect = e-107
Identities = 211/306 (68%), Positives = 222/306 (72%), Gaps = 5/306 (1%)
Frame = +2
Query: 464 PARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 631
PARG EVAE SEEQPA+ G V
Sbjct: 17 PARGLEVAEEGSHLQSEEQPAHALLAGVVSTSEEEHPRGPGGQDRSAGEAGTVLGLDADG 76
Query: 632 DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDSSG-SFXXXXXXX 808
D V+MLSVIPGE +D LS EP +EDSRC LRE LFSLD +G SF
Sbjct: 77 DHVLMLSVIPGETDDKLSSEPSGGTCGAQG-EEDSRCSLREHLFSLDGTGASFQDREEEY 135
Query: 809 XXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNG 988
V +SDPAP ED+N TESLK PKV CEERNV+GLENFTLK+LN+SQDLMDFLNPNG
Sbjct: 136 YSEPEVGESDPAPHEDSNNTESLKSPKVNCEERNVTGLENFTLKVLNMSQDLMDFLNPNG 195
Query: 989 SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL 1168
SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL
Sbjct: 196 SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL 255
Query: 1169 FQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVNSADHIGPLSSTLIKRVDWLLE 1348
FQGAKPMARFNHTDRTLETLK+FIFNQTGIEAKKNVVV AD IGPL STLIK VDWLL
Sbjct: 256 FQGAKPMARFNHTDRTLETLKVFIFNQTGIEAKKNVVVTQADQIGPLPSTLIKSVDWLLV 315
Query: 1349 FSLFFL 1366
FSLFFL
Sbjct: 316 FSLFFL 321
>ref|XP_532011.2| PREDICTED: similar to Thioredoxin domain containing protein 4
precursor (Endoplasmic reticulum resident protein ERp44)
[Canis familiaris].
Length = 344
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +2
Query: 983 NGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFP---ALHFLALDASQHSSLSTRFG 1141
N +D LV FY WCRFS L P F N + +P + F +D QHS ++ R+
Sbjct: 114 NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIAQRYR 173
Query: 1142 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 1249
P + LF+ M R R+++ L +I Q
Sbjct: 174 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 209
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,970,754
Number of extensions: 1423042
Number of successful extensions: 5891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5868
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 350
Effective length of database: 15,340,888
Effective search space: 5369310800
Effective search space used: 5369310800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078991.3| thioredoxin domain-containing protein 15 precur... 414 e-115
Alignment gi|NP_055866.1| endoplasmic reticulum resident protein 44 precu... 51 3e-06
>ref|NP_078991.3| thioredoxin domain-containing protein 15 precursor [Homo sapiens].
Length = 360
Score = 414 bits (1063), Expect = e-115
Identities = 225/329 (68%), Positives = 237/329 (72%), Gaps = 5/329 (1%)
Frame = +2
Query: 395 GRRPPRTMRXXXXXXXXXXXXXPPARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXX 565
GRRPPR MR P RG EVAE WSEEQPA+P QVGAVY
Sbjct: 6 GRRPPRVMRLLGWWQVLLWVLGLPVRGVEVAEESGRLWSEEQPAHPLQVGAVYLGEEELL 65
Query: 566 XXXXXXXXXXXXXXXXXXXXXX-DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRC 742
D +VMLSVIPGEAED +S EP EDSRC
Sbjct: 66 HDPMGQDRAAEEANAVLGLDTQGDHMVMLSVIPGEAEDKVSSEPSGVTCGAGGA-EDSRC 124
Query: 743 HLRESLFSLDSSGS-FXXXXXXXXXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSG 919
++RESLFSLD +G+ F VA+SD AP ED+N TESLK PKV CEERN++G
Sbjct: 125 NVRESLFSLDGAGAHFPDREEEYYTEPEVAESDAAPTEDSNNTESLKSPKVNCEERNITG 184
Query: 920 LENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA 1099
LENFTLKILN+SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA
Sbjct: 185 LENFTLKILNMSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA 244
Query: 1100 LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV 1279
LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV
Sbjct: 245 LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV 304
Query: 1280 VNSADHIGPLSSTLIKRVDWLLEFSLFFL 1366
V AD IGPL STLIK VDWLL FSLFFL
Sbjct: 305 VTQADQIGPLPSTLIKSVDWLLVFSLFFL 333
>ref|NP_055866.1| endoplasmic reticulum resident protein 44 precursor [Homo sapiens].
Length = 406
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +2
Query: 983 NGSDCTLVLFYTPWCRFSASLAPHFNS----LPRAFP---ALHFLALDASQHSSLSTRFG 1141
N +D LV FY WCRFS L P F + FP + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 103
Query: 1142 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 1249
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,767,398
Number of extensions: 1366520
Number of successful extensions: 5021
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5001
Number of HSP's successfully gapped: 3
Length of query: 456
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 350
Effective length of database: 14,802,980
Effective search space: 5181043000
Effective search space used: 5181043000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780359.2| thioredoxin domain-containing protein 15 precur... 365 e-101
Alignment gi|NP_083848.1| endoplasmic reticulum resident protein 44 precu... 50 5e-06
>ref|NP_780359.2| thioredoxin domain-containing protein 15 precursor [Mus musculus].
Length = 344
Score = 365 bits (938), Expect = e-101
Identities = 199/304 (65%), Positives = 214/304 (70%), Gaps = 3/304 (0%)
Frame = +2
Query: 464 PARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 634
PA G EVAE W EE+P QVGAVY D
Sbjct: 17 PAHGLEVAEDSGHPWREERPVPALQVGAVY-LHEEEVAQDHRDQARAAEPMEASLGPRGD 75
Query: 635 RVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDSSGSFXXXXXXXXX 814
+V+LSV+PG AED SPE +ED C RE+LF L +G F
Sbjct: 76 PMVVLSVVPGAAEDQRSPE-AHDGTCSAQGEEDPSCG-RENLFGLQGAGGFQDREEEYYA 133
Query: 815 XXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSD 994
V +++P EDAN+T+SLK PKV CEERNV+GLENFTLKILN+SQDLMDFLNPNGSD
Sbjct: 134 EPGVTEAEPVATEDANSTDSLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSD 193
Query: 995 CTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQ 1174
CTLVLFYTPWCRFSASLAPHFNSLPRAFP L FLALDASQHSSLSTRFGTVAVPNILLFQ
Sbjct: 194 CTLVLFYTPWCRFSASLAPHFNSLPRAFPTLGFLALDASQHSSLSTRFGTVAVPNILLFQ 253
Query: 1175 GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVNSADHIGPLSSTLIKRVDWLLEFS 1354
GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVV AD +GPL STLIK VDWLL FS
Sbjct: 254 GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADQMGPLPSTLIKTVDWLLVFS 313
Query: 1355 LFFL 1366
LFFL
Sbjct: 314 LFFL 317
>ref|NP_083848.1| endoplasmic reticulum resident protein 44 precursor [Mus musculus].
Length = 406
Score = 49.7 bits (117), Expect = 5e-06
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +2
Query: 983 NGSDCTLVLFYTPWCRFSASLAPHFNS----LPRAFP---ALHFLALDASQHSSLSTRFG 1141
N +D LV FY WCRFS L P F + +P + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYR 103
Query: 1142 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 1249
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,701,285
Number of extensions: 1121621
Number of successful extensions: 3963
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3951
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 351
Effective length of database: 12,463,779
Effective search space: 4374786429
Effective search space used: 4374786429
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230547.1| thioredoxin domain containing 15 [Sus scrofa]. 476 e-134
Alignment gi|NP_001131101.1| endoplasmic reticulum resident protein 44 [S... 51 1e-06
>ref|NP_001230547.1| thioredoxin domain containing 15 [Sus scrofa].
Length = 344
Score = 476 bits (1226), Expect = e-134
Identities = 246/302 (81%), Positives = 246/302 (81%)
Frame = +2
Query: 461 PPARGQEVAESRWSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRV 640
PPARGQEVAESRWSEEQPAYPFQVGAVY DRV
Sbjct: 16 PPARGQEVAESRWSEEQPAYPFQVGAVYLGEEEPAGDPAGPDAAAEEAAVLGLEADGDRV 75
Query: 641 VMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDSSGSFXXXXXXXXXXX 820
VMLSVIPGEAEDNLSPEP QEDSRCHLRESLFSLDSSGSF
Sbjct: 76 VMLSVIPGEAEDNLSPEPGGGGTCGAGGQEDSRCHLRESLFSLDSSGSFPEREEEYYTEP 135
Query: 821 XVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCT 1000
VADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCT
Sbjct: 136 EVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCT 195
Query: 1001 LVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGA 1180
LVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGA
Sbjct: 196 LVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGA 255
Query: 1181 KPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVNSADHIGPLSSTLIKRVDWLLEFSLF 1360
KPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVV ADHIGPL STLIK VDWLL FSLF
Sbjct: 256 KPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWLLVFSLF 315
Query: 1361 FL 1366
FL
Sbjct: 316 FL 317
>ref|NP_001131101.1| endoplasmic reticulum resident protein 44 [Sus scrofa].
Length = 406
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +2
Query: 983 NGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFP---ALHFLALDASQHSSLSTRFG 1141
N +D LV FY WCRFS L P F N + +P + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIAQRYR 103
Query: 1142 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 1249
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,906,005
Number of extensions: 943612
Number of successful extensions: 3580
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3571
Number of HSP's successfully gapped: 2
Length of query: 456
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 354
Effective length of database: 8,804,438
Effective search space: 3116771052
Effective search space used: 3116771052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002731
(1368 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 950 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 950 bits (479), Expect = 0.0
Identities = 479/479 (100%)
Strand = Plus / Plus
Query: 481 agttgcagagagcagatggtcagaggagcagcccgcgtaccccttccaggtcggggctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687298 agttgcagagagcagatggtcagaggagcagcccgcgtaccccttccaggtcggggctgt 142687357
Query: 541 gtacctgggtgaggaggagccggcaggggacccggcgggcccggacgcggccgcagaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687358 gtacctgggtgaggaggagccggcaggggacccggcgggcccggacgcggccgcagaaga 142687417
Query: 601 ggccgctgtgctggggctggaagccgatggcgaccgcgtggtgatgttgtcggtgattcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687418 ggccgctgtgctggggctggaagccgatggcgaccgcgtggtgatgttgtcggtgattcc 142687477
Query: 661 cggggaagccgaggacaacctgagcccggagcccggcggcggcggcacctgcggggccgg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687478 cggggaagccgaggacaacctgagcccggagcccggcggcggcggcacctgcggggccgg 142687537
Query: 721 agggcaggaggactcgaggtgccatctccgggagagcctcttctctctggacagctctgg 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687538 agggcaggaggactcgaggtgccatctccgggagagcctcttctctctggacagctctgg 142687597
Query: 781 aagcttccccgagagggaggaggagtactacacggagcccgaagtggcggactccgaccc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687598 aagcttccccgagagggaggaggagtactacacggagcccgaagtggcggactccgaccc 142687657
Query: 841 cgcccccgcggaggacgccaacgccaccgagagcctgaaaccgcccaaggtcacctgcga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687658 cgcccccgcggaggacgccaacgccaccgagagcctgaaaccgcccaaggtcacctgcga 142687717
Query: 901 ggagcggaatgtgtcgggcttggaaaacttcactctgaaaattttgaatgtgtcacagg 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142687718 ggagcggaatgtgtcgggcttggaaaacttcactctgaaaattttgaatgtgtcacagg 142687776
Score = 553 bits (279), Expect = e-155
Identities = 282/283 (99%)
Strand = Plus / Plus
Query: 1 gacgcggcgaactgaccctcgatggggcactcgaggaagaagcctctggggctttccggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142676739 gacgcggcgaactgaccctcgatggggcactcgaggaagaagcctctggggctttccggc 142676798
Query: 61 cggggaacgaagcgccaaggcccccactgccgtgtgaagaaagaaggtaatgggctttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142676799 cggggaacgaagcgccaaggcccccactgccgtgtgaagaaagaaggtaatgggctttcg 142676858
Query: 121 tggaagctcgcccaggacttgggggcccggaaaccgaaaagatccgagacggctggcgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142676859 tggaagctcgcccaggacttgggggcccggaaaccgaaaagatccgagacggctggcgat 142676918
Query: 181 tggctcctaaacagcccggggccccacggcgcaggccagaggccagaggcggccgcccga 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142676919 tggctcctaaacggcccggggccccacggcgcaggccagaggccagaggcggccgcccga 142676978
Query: 241 ctccaagatggcgcccgcggaggaggctgccagcggccaggat 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142676979 ctccaagatggcgcccgcggaggaggctgccagcggccaggat 142677021
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 316 tctcctccccctgccttcctgcggcggagagcgcgcctcgcgcggccgtgcgccgtttgc 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142677054 tctcctccccctgccttcctgcggcggagagcgcgcctcgcgcggccgtgcgccgtttgc 142677113
Query: 376 ccttcggcctgggtggtgcggccgccgcccgccccgcaccatgcgactccttggctggtg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142677114 ccttcggcctgggtggtgcggccgccgcccgccccgcaccatgcgactccttggctggtg 142677173
Query: 436 gcaggtactcctatgggtgctggggcctccggcccgcggccaggaag 482
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142677174 gcaggtactcctatgggtgctggggcctccggcccgcggccaggaag 142677220
Score = 331 bits (167), Expect = 6e-88
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 956 caggaccttatggattttctcaaccccaacggtagtgactgcacgctagtcctgttttac 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142689615 caggaccttatggattttctcaaccccaacggtagtgactgcacgctagtcctgttttac 142689674
Query: 1016 accccttggtgccgattttccgccagtttggcccctcattttaattctctaccccgggcc 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142689675 accccttggtgccgattttccgccagtttggcccctcattttaattctctaccccgggcc 142689734
Query: 1076 tttccagctcttcattttttggcactggatgcatctcagcacagcag 1122
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142689735 tttccagctcttcattttttggcactggatgcatctcagcacagcag 142689781
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1121 agcctctctacgcggtttggcaccgtagccgttcctaacatcttgttatttcaaggtgct 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142691977 agcctctctacgcggtttggcaccgtagccgttcctaacatcttgttatttcaaggtgct 142692036
Query: 1181 aaaccaatggctagatttaaccacacagaccgaacactggaaacgctgaagatcttcatt 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142692037 aaaccaatggctagatttaaccacacagaccgaacactggaaacgctgaagatcttcatt 142692096
Query: 1241 tttaaccagacggg 1254
||||||||||||||
Sbjct: 142692097 tttaaccagacggg 142692110
Score = 176 bits (89), Expect = 2e-41
Identities = 112/117 (95%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 1253 ggcatagaagccaagaaaaatgtggtggttaactca-gctgaccacataggccctctttc 1311
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
Sbjct: 142694628 ggcatagaagccaagaaaaatgtggtggt-aactcaagctgaccacataggccctcttcc 142694686
Query: 1312 cagcactttgataaaaagggtggactggctgctcgaattttccttattctttttaat 1368
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 142694687 cagcactttgataaaaagtgtggactggctgctcgtattttccttattctttttaat 142694743
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,913,920
Number of extensions: 268
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 6
Length of query: 1368
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1347
Effective length of database: 2,808,413,156
Effective search space: 3782932521132
Effective search space used: 3782932521132
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)