Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095423.1| glyoxalase domain-containing protein 4 [Bos ... 542 e-154
>ref|NP_001095423.1| glyoxalase domain-containing protein 4 [Bos taurus].
Length = 298
Score = 542 bits (1397), Expect = e-154
Identities = 257/298 (86%), Positives = 281/298 (94%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MA RRALHFVFKVGNRF+TA FYRDVLGMKILRHEEF +GCKAACNGPYDGKWSKTMVG+
Sbjct: 1 MANRRALHFVFKVGNRFETACFYRDVLGMKILRHEEFQDGCKAACNGPYDGKWSKTMVGY 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFV ELTYNYGIG+Y+LGNDF+GIT+AS QAVSNARKL+WPLSE+ +GV+ET+AP
Sbjct: 61 GPEDDHFVTELTYNYGIGSYQLGNDFLGITVASRQAVSNARKLKWPLSEMGDGVFETKAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQ+CSPP+SDPVLKVTLAVSDLQKSLNYWSNLLGMKIYE+DEK QRALLGYADN
Sbjct: 121 GGYKFYLQDCSPPQSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEEDEKKQRALLGYADN 180
Query: 584 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 763
QCKLEL+ I G VDHA FGRIAFSCPQKEL +LEDLMKRENQKILTPLVSLDTPGKATV
Sbjct: 181 QCKLELRAIPGKVDHATGFGRIAFSCPQKELSDLEDLMKRENQKILTPLVSLDTPGKATV 240
Query: 764 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 937
QV+ILADPDGHEICFVGDEAFRELSK+DP G+KLLDDA++ DKSDEWFA + KPKA+G
Sbjct: 241 QVIILADPDGHEICFVGDEAFRELSKVDPEGNKLLDDAISGDKSDEWFAAQKKPKATG 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,936,858
Number of extensions: 1514300
Number of successful extensions: 5103
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5073
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 377
Effective length of database: 14,174,046
Effective search space: 5343615342
Effective search space used: 5343615342
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537759.2| PREDICTED: similar to CG1532-PA isoform 1 [Cani... 564 e-161
Alignment gi|XP_868387.1| PREDICTED: similar to CG1532-PA isoform 3 [Cani... 516 e-146
Alignment gi|XP_868383.1| PREDICTED: similar to CG1532-PA isoform 2 [Cani... 349 4e-96
>ref|XP_537759.2| PREDICTED: similar to CG1532-PA isoform 1 [Canis familiaris].
Length = 298
Score = 564 bits (1454), Expect = e-161
Identities = 271/298 (90%), Positives = 285/298 (95%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MATRRALHFVFKVGNRFQTA F+RDVLGMKILRHEEF+EGCKAACNGPYDGKWSKTMVGF
Sbjct: 1 MATRRALHFVFKVGNRFQTARFFRDVLGMKILRHEEFEEGCKAACNGPYDGKWSKTMVGF 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFVAELTYNYGIG+YKLGNDFMGITL SSQAV NARKLEWPLSEV EG++ETEAP
Sbjct: 61 GPEDDHFVAELTYNYGIGHYKLGNDFMGITLVSSQAVCNARKLEWPLSEVTEGIFETEAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQ+ SPP SDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDE+ QR LLGYADN
Sbjct: 121 GGYKFYLQDHSPPESDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEEKQRVLLGYADN 180
Query: 584 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 763
QCKLELQGI+G +DHAAAFGRIAFSCPQKELP+LEDLMKRENQKILTPLVSLDTPGKATV
Sbjct: 181 QCKLELQGIKGTIDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILTPLVSLDTPGKATV 240
Query: 764 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 937
QV+ILADPDGHEICFVGDEAFRELSKMDP GS+LLDDAMA DKSDEWF ++NK KASG
Sbjct: 241 QVIILADPDGHEICFVGDEAFRELSKMDPEGSRLLDDAMAADKSDEWFTKQNKSKASG 298
>ref|XP_868387.1| PREDICTED: similar to CG1532-PA isoform 3 [Canis familiaris].
Length = 312
Score = 516 bits (1329), Expect = e-146
Identities = 258/312 (82%), Positives = 275/312 (88%), Gaps = 14/312 (4%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKI------------LRHE--EFDEGCKAACN 181
MATRRALHFVFKVGNRFQTA F+RDVLGMK+ LR E+ + +
Sbjct: 1 MATRRALHFVFKVGNRFQTARFFRDVLGMKVQECNLMRIGTTTLRGHCSEYPWRTEDSFL 60
Query: 182 GPYDGKWSKTMVGFGPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWP 361
PYDGKWSKTMVGFGPEDDHFVAELTYNYGIG+YKLGNDFMGITL SSQAV NARKLEWP
Sbjct: 61 KPYDGKWSKTMVGFGPEDDHFVAELTYNYGIGHYKLGNDFMGITLVSSQAVCNARKLEWP 120
Query: 362 LSEVAEGVYETEAPGGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEK 541
LSEV EG++ETEAPGGYKFYLQ+ SPP SDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEK
Sbjct: 121 LSEVTEGIFETEAPGGYKFYLQDHSPPESDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEK 180
Query: 542 DEKTQRALLGYADNQCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKIL 721
DE+ QR LLGYADNQCKLELQGI+G +DHAAAFGRIAFSCPQKELP+LEDLMKRENQKIL
Sbjct: 181 DEEKQRVLLGYADNQCKLELQGIKGTIDHAAAFGRIAFSCPQKELPDLEDLMKRENQKIL 240
Query: 722 TPLVSLDTPGKATVQVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDE 901
TPLVSLDTPGKATVQV+ILADPDGHEICFVGDEAFRELSKMDP GS+LLDDAMA DKSDE
Sbjct: 241 TPLVSLDTPGKATVQVIILADPDGHEICFVGDEAFRELSKMDPEGSRLLDDAMAADKSDE 300
Query: 902 WFAERNKPKASG 937
WF ++NK KASG
Sbjct: 301 WFTKQNKSKASG 312
>ref|XP_868383.1| PREDICTED: similar to CG1532-PA isoform 2 [Canis familiaris].
Length = 188
Score = 349 bits (895), Expect = 4e-96
Identities = 166/181 (91%), Positives = 173/181 (95%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MATRRALHFVFKVGNRFQTA F+RDVLGMKILRHEEF+EGCKAACNGPYDGKWSKTMVGF
Sbjct: 1 MATRRALHFVFKVGNRFQTARFFRDVLGMKILRHEEFEEGCKAACNGPYDGKWSKTMVGF 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFVAELTYNYGIG+YKLGNDFMGITL SSQAV NARKLEWPLSEV EG++ETEAP
Sbjct: 61 GPEDDHFVAELTYNYGIGHYKLGNDFMGITLVSSQAVCNARKLEWPLSEVTEGIFETEAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQ+ SPP SDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDE+ QR LLGYADN
Sbjct: 121 GGYKFYLQDHSPPESDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEEKQRVLLGYADN 180
Query: 584 Q 586
Q
Sbjct: 181 Q 181
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,389,754
Number of extensions: 1564379
Number of successful extensions: 5147
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5135
Number of HSP's successfully gapped: 3
Length of query: 483
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 376
Effective length of database: 15,307,552
Effective search space: 5755639552
Effective search space used: 5755639552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057164.3| glyoxalase domain-containing protein 4 [Homo sa... 571 e-163
>ref|NP_057164.3| glyoxalase domain-containing protein 4 [Homo sapiens].
Length = 298
Score = 571 bits (1472), Expect = e-163
Identities = 276/298 (92%), Positives = 288/298 (96%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MA RRALHFVFKVGNRFQTA FYRDVLGMK+LRHEEF+EGCKAACNGPYDGKWSKTMVGF
Sbjct: 1 MAARRALHFVFKVGNRFQTARFYRDVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMVGF 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFVAELTYNYG+G+YKLGNDFMGITLASSQAVSNARKLEWPL+EVAEGV+ETEAP
Sbjct: 61 GPEDDHFVAELTYNYGVGDYKLGNDFMGITLASSQAVSNARKLEWPLTEVAEGVFETEAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQN S P+SDPVLKVTLAVSDLQKSLNYW NLLGMKIYEKDE+ QRALLGYADN
Sbjct: 121 GGYKFYLQNRSLPQSDPVLKVTLAVSDLQKSLNYWCNLLGMKIYEKDEEKQRALLGYADN 180
Query: 584 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 763
QCKLELQG++G VDHAAAFGRIAFSCPQKELP+LEDLMKRENQKILTPLVSLDTPGKATV
Sbjct: 181 QCKLELQGVKGGVDHAAAFGRIAFSCPQKELPDLEDLMKRENQKILTPLVSLDTPGKATV 240
Query: 764 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 937
QVVILADPDGHEICFVGDEAFRELSKMDP GSKLLDDAMA DKSDEWFA+ NKPKASG
Sbjct: 241 QVVILADPDGHEICFVGDEAFRELSKMDPEGSKLLDDAMAADKSDEWFAKHNKPKASG 298
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,445,827
Number of extensions: 1546378
Number of successful extensions: 5195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5174
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 377
Effective length of database: 14,802,980
Effective search space: 5580723460
Effective search space used: 5580723460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080305.2| glyoxalase domain-containing protein 4 [Mus mus... 563 e-160
>ref|NP_080305.2| glyoxalase domain-containing protein 4 [Mus musculus].
Length = 298
Score = 563 bits (1450), Expect = e-160
Identities = 272/298 (91%), Positives = 287/298 (96%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MATRRALHFVFKV NRFQT +F+RDVLGM++LRHEEF+EGCKAACNGPYDGKWSKTMVGF
Sbjct: 1 MATRRALHFVFKVKNRFQTVHFFRDVLGMQVLRHEEFEEGCKAACNGPYDGKWSKTMVGF 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFVAELTYNYGIG+YKLGNDFMGITLASSQAVSNARKLEWPLS+VAEG++ETEAP
Sbjct: 61 GPEDDHFVAELTYNYGIGDYKLGNDFMGITLASSQAVSNARKLEWPLSKVAEGIFETEAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQ+ SP +SDPVLKVTLAVSDLQKSLNYWSNLLGMKIYE+DE+ QRALLGYADN
Sbjct: 121 GGYKFYLQDRSPSQSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEQDEEKQRALLGYADN 180
Query: 584 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 763
QCKLELQGIQGAVDHAAAFGRIAFSCPQKELP+LEDLMKRE+ ILTPLVSLDTPGKATV
Sbjct: 181 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPDLEDLMKRESHSILTPLVSLDTPGKATV 240
Query: 764 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 937
QVVILADPDGHEICFVGDEAFRELSKMDP GSKLLDDAM DKSDEWFA RNKPKASG
Sbjct: 241 QVVILADPDGHEICFVGDEAFRELSKMDPKGSKLLDDAMEADKSDEWFATRNKPKASG 298
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,777,994
Number of extensions: 1313036
Number of successful extensions: 4412
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4391
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 378
Effective length of database: 12,463,779
Effective search space: 4711308462
Effective search space used: 4711308462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131863.2| PREDICTED: glyoxalase domain-containing prot... 613 e-176
>ref|XP_003131863.2| PREDICTED: glyoxalase domain-containing protein 4-like [Sus
scrofa].
Length = 298
Score = 613 bits (1580), Expect = e-176
Identities = 298/298 (100%), Positives = 298/298 (100%)
Frame = +2
Query: 44 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 223
MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF
Sbjct: 1 MATRRALHFVFKVGNRFQTAYFYRDVLGMKILRHEEFDEGCKAACNGPYDGKWSKTMVGF 60
Query: 224 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 403
GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP
Sbjct: 61 GPEDDHFVAELTYNYGIGNYKLGNDFMGITLASSQAVSNARKLEWPLSEVAEGVYETEAP 120
Query: 404 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 583
GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN
Sbjct: 121 GGYKFYLQNCSPPRSDPVLKVTLAVSDLQKSLNYWSNLLGMKIYEKDEKTQRALLGYADN 180
Query: 584 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 763
QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV
Sbjct: 181 QCKLELQGIQGAVDHAAAFGRIAFSCPQKELPELEDLMKRENQKILTPLVSLDTPGKATV 240
Query: 764 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 937
QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG
Sbjct: 241 QVVILADPDGHEICFVGDEAFRELSKMDPGGSKLLDDAMAEDKSDEWFAERNKPKASG 298
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,602,662
Number of extensions: 969036
Number of successful extensions: 3254
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3238
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 380
Effective length of database: 8,779,541
Effective search space: 3336225580
Effective search space used: 3336225580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002734
(1451 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1098 0.0
Sscrofa_Chr03 232 4e-58
>Sscrofa_Chr12
|| Length = 63588571
Score = 1098 bits (554), Expect = 0.0
Identities = 562/565 (99%)
Strand = Plus / Plus
Query: 875 gcaatggcagaagacaaaagtgatgaatggtttgccgaacgaaataagccaaaggcttca 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267156 gcaatggcagaagacaaaagtgatgaatggtttgccgaacgaaataagccaaaggcttca 49267215
Query: 935 ggttaagagaaggtaccatgtgaaacaagcatttgggattctgccgaatgcctgtgaggc 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267216 ggttaagagaaggtaccatgtgaaacaagcatttgggattctgccgaatgcctgtgaggc 49267275
Query: 995 ctgacgtgtgccctatgtgataaacactctcccagcttgattgtttcccgtgcagccaag 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267276 ctgacgtgtgccctatgtgataaacactctcccagcttgattgtttcccgtgcagccaag 49267335
Query: 1055 gaggctggggtggtggagatttgcatttctaatatgtgagagctctgatatattttagag 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267336 gaggctggggtggtggagatttgcatttctaatatgtgagagctctgatatattttagag 49267395
Query: 1115 agaaaatcagtccatttagaggagaactctggccgttacctacactgtccctgcaaaggg 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267396 agaaaatcagtccatttagaggagaactctggccgttacctacactgtccctgcaaaggg 49267455
Query: 1175 cacattctgtatgtgactatattagattaataataaattctccggcctgnggcagctcta 1234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 49267456 cacattctgtatgtgactatattagattaataataaattctccggcctggggcagctcta 49267515
Query: 1235 tggaacattacctatgttggggatagagtgagttttgataagaatgtagattcaatgaga 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267516 tggaacattacctatgttggggatagagtgagttttgataagaatgtagattcaatgaga 49267575
Query: 1295 atccagatcagttgcatatagcaggagtatttccaacacctgattgacgctcccacattc 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267576 atccagatcagttgcatatagcaggagtatttccaacacctgattgacgctcccacattc 49267635
Query: 1355 cttgcttttcaattttgagcagccagagaaaacagacagaaggatctaaggtgctgcatt 1414
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49267636 cttgctttcaaattttgagcagccagagaaaacagacagaaggatctaaggtgctgcatt 49267695
Query: 1415 tccccgtgcctggctctctgtgtgg 1439
|||||||||||||||||||||||||
Sbjct: 49267696 tccccgtgcctggctctctgtgtgg 49267720
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 304 gggaatcacactcgcttctagccaggccgtcagcaacgccaggaagctggagtggccgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49256223 gggaatcacactcgcttctagccaggccgtcagcaacgccaggaagctggagtggccgct 49256282
Query: 364 cagtgaagttgcggaaggggtttatgaaaccgaagccccgggaggatataagttctattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49256283 cagtgaagttgcggaaggggtttatgaaaccgaagccccgggaggatataagttctattt 49256342
Query: 424 gcagaactgcagtccacctcggtcag 449
||||||||||||||||||||||||||
Sbjct: 49256343 gcagaactgcagtccacctcggtcag 49256368
Score = 278 bits (140), Expect = 8e-72
Identities = 140/140 (100%)
Strand = Plus / Plus
Query: 447 cagatcctgtattaaaagtcactctagcagtgtctgatcttcagaagtccttgaactact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49260618 cagatcctgtattaaaagtcactctagcagtgtctgatcttcagaagtccttgaactact 49260677
Query: 507 ggtctaatctactgggaatgaaaatttatgaaaaagatgaaaagacgcaaagggctttgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49260678 ggtctaatctactgggaatgaaaatttatgaaaaagatgaaaagacgcaaagggctttgc 49260737
Query: 567 tgggctatgctgataaccag 586
||||||||||||||||||||
Sbjct: 49260738 tgggctatgctgataaccag 49260757
Score = 256 bits (129), Expect = 3e-65
Identities = 132/133 (99%)
Strand = Plus / Plus
Query: 1 ggtgcggcgccgtaagcgtgagaggtgggtggcgtccgcggtcatggcgactcgcagagc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 49251710 ggtgcggcgccgtaagcgtgagaggtgggtggtgtccgcggtcatggcgactcgcagagc 49251769
Query: 61 tctgcacttcgtgttcaaagtgggaaaccgcttccagactgcatatttctatcgtgatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49251770 tctgcacttcgtgttcaaagtgggaaaccgcttccagactgcatatttctatcgtgatgt 49251829
Query: 121 cctggggatgaag 133
|||||||||||||
Sbjct: 49251830 cctggggatgaag 49251842
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 183 ggccttacgatgggaaatggagtaaaacaatggtgggatttggacccgaggatgatcatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49255137 ggccttacgatgggaaatggagtaaaacaatggtgggatttggacccgaggatgatcatt 49255196
Query: 243 ttgttgctgaactgacgtacaattacggtatcggaaactacaagcttggcaatgacttca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49255197 ttgttgctgaactgacgtacaattacggtatcggaaactacaagcttggcaatgacttca 49255256
Query: 303 tgg 305
|||
Sbjct: 49255257 tgg 49255259
Score = 228 bits (115), Expect = 7e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 672 agttgccagaattagaagacttgatgaaaagggagaaccagaagattctgactcccctgg 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49262733 agttgccagaattagaagacttgatgaaaagggagaaccagaagattctgactcccctgg 49262792
Query: 732 tgagcctggacactccggggaaagcaacggtgcaagtcgtcattctggctgaccc 786
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49262793 tgagcctggacactccggggaaagcaacggtgcaagtcgtcattctggctgaccc 49262847
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 584 cagtgtaagctggagctacagggcatccaaggggcagttgatcatgcagcagcttttgga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49262375 cagtgtaagctggagctacagggcatccaaggggcagttgatcatgcagcagcttttgga 49262434
Query: 644 cgaattgccttttcttgcccccagaaagag 673
||||||||||||||||||||||||||||||
Sbjct: 49262435 cgaattgccttttcttgcccccagaaagag 49262464
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 788 gatggacacgaaatttgctttgtgggggacgaagcatttcgagaactctctaagatggat 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49262938 gatggacacgaaatttgctttgtgggggacgaagcatttcgagaactctctaagatggat 49262997
Query: 848 ccagggggaagcaaattactggatgacg 875
||||||||||||||||||||||||||||
Sbjct: 49262998 ccagggggaagcaaattactggatgacg 49263025
Score = 105 bits (53), Expect = 7e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 132 agattcttcgacatgaggaatttgacgaaggctgcaaagctgcctgtaatggg 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49254522 agattcttcgacatgaggaatttgacgaaggctgcaaagctgcctgtaatggg 49254574
>Sscrofa_Chr03
|| Length = 144787322
Score = 232 bits (117), Expect = 4e-58
Identities = 309/372 (83%), Gaps = 17/372 (4%)
Strand = Plus / Minus
Query: 564 tgctgggctatgctgataaccagtgtaagctggagctacagggcatccaaggggcagttg 623
||||||||| |||||| |||||||||||| | ||||||| ||| || | ||||||| ||
Sbjct: 45869886 tgctgggctttgctgacaaccagtgtaagtggaagctacatggcctcaagggggcaggtg 45869827
Query: 624 atcatgcagcagcttttggacgaattgccttttcttgcccccagaaagagttgccagaat 683
| |||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 45869826 accatgcagcagcttttggatgaattgctttttcttgcccccagaa-------------t 45869780
Query: 684 tagaagacttgatgaaaagggagaaccagaagattctgactcccctggtgagcctggaca 743
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct: 45869779 tagaagacttgatgaaaagggcaaaccagaagattctgactcccctgg--agtctggacc 45869722
Query: 744 ctccggggaaagcaacggtgcaagtcgt-cattctggctgaccccgatggacacgaaatt 802
|||| ||||||||||| |||||||| | |||| || | |||| ||| |||| ||||||
Sbjct: 45869721 ctccagggaaagcaacagtgcaagtgattcattttgacccaccctgatagacatgaaatt 45869662
Query: 803 tgctttgtgggggacgaagcatttcgagaactctcta-agatggatccagggggaagcaa 861
||| ||||| | || || || ||| ||||||||||| |||||||||||| |||||||||
Sbjct: 45869661 tgccttgtgagagatgatgccttttgagaactctctttagatggatccagagggaagcaa 45869602
Query: 862 attactggatgacgcaatggcagaagacaaaagtgatgaatggtttgccgaacgaaataa 921
|||| ||||||| |||||||||||||| ||||||||||||||| ||| |||| ||||||
Sbjct: 45869601 attattggatgatgcaatggcagaagataaaagtgatgaatggactgctgaacaaaataa 45869542
Query: 922 gccaaaggcttc 933
||| |||||||
Sbjct: 45869541 accacaggcttc 45869530
Score = 232 bits (117), Expect = 4e-58
Identities = 309/372 (83%), Gaps = 17/372 (4%)
Strand = Plus / Plus
Query: 564 tgctgggctatgctgataaccagtgtaagctggagctacagggcatccaaggggcagttg 623
||||||||| |||||| |||||||||||| | ||||||| ||| || | ||||||| ||
Sbjct: 46036701 tgctgggctttgctgacaaccagtgtaagtggaagctacatggcctcaagggggcaggtg 46036760
Query: 624 atcatgcagcagcttttggacgaattgccttttcttgcccccagaaagagttgccagaat 683
| |||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct: 46036761 accatgcagcagcttttggatgaattgctttttcttgcccccagaa-------------t 46036807
Query: 684 tagaagacttgatgaaaagggagaaccagaagattctgactcccctggtgagcctggaca 743
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct: 46036808 tagaagacttgatgaaaagggcaaaccagaagattctgactcccctgg--agtctggacc 46036865
Query: 744 ctccggggaaagcaacggtgcaagtcgt-cattctggctgaccccgatggacacgaaatt 802
|||| ||||||||||| |||||||| | |||| || | |||| ||| |||| ||||||
Sbjct: 46036866 ctccagggaaagcaacagtgcaagtgattcattttgacccaccctgatagacatgaaatt 46036925
Query: 803 tgctttgtgggggacgaagcatttcgagaactctcta-agatggatccagggggaagcaa 861
||| ||||| | || || || ||| ||||||||||| |||||||||||| |||||||||
Sbjct: 46036926 tgccttgtgagagatgatgccttttgagaactctctttagatggatccagagggaagcaa 46036985
Query: 862 attactggatgacgcaatggcagaagacaaaagtgatgaatggtttgccgaacgaaataa 921
|||| ||||||| |||||||||||||| ||||||||||||||| ||| |||| ||||||
Sbjct: 46036986 attattggatgatgcaatggcagaagataaaagtgatgaatggactgctgaacaaaataa 46037045
Query: 922 gccaaaggcttc 933
||| |||||||
Sbjct: 46037046 accacaggcttc 46037057
Score = 135 bits (68), Expect = 8e-29
Identities = 238/294 (80%), Gaps = 8/294 (2%)
Strand = Plus / Minus
Query: 78 aagtgggaaaccgcttccagactgcatatttctatcgtgatgtcctggggatgaagattc 137
||||||||||| |||||||||| | | | ||||| |||||||||| || ||||||||||
Sbjct: 45870182 aagtgggaaactgcttccagacagtgtgtctctattgtgatgtcctaggaatgaagattc 45870123
Query: 138 ttcgacatgaggaatttgacgaaggctgcaaagctgcctgtaatgggccttacgatggga 197
|| | ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 45870122 tttggagtgaggaatttgacgagggctgcaaagctgcctgtaatg-------tgatggga 45870070
Query: 198 aatggagtaaaacaatggtgggatttggacccgaggatgatcattttgttgctgaactga 257
||||| || ||| |||||||||| || | || ||||||||||| |||||||| ||||||
Sbjct: 45870069 aatggtgt-aaataatggtgggacttaggcctgaggatgatcactttgttgccaaactga 45870011
Query: 258 cgtacaattacggtatcggaaactacaagcttggcaatgacttcatgggaatcacactcg 317
|||||||| || ||| || || ||| |||| | |||| ||| || | ||| ||||
Sbjct: 45870010 attacaattatggcatctgagtctgcaaacttgaaactgacatcacaggtaccacgctcg 45869951
Query: 318 cttctagccaggccgtcagcaacgccaggaagctggagtggccgctcagtgaag 371
||||||| ||||| |||||||| |||||||| |||||||||| ||||||||||
Sbjct: 45869950 cttctagacaggctgtcagcaagtccaggaaggtggagtggccactcagtgaag 45869897
Score = 89.7 bits (45), Expect = 4e-15
Identities = 176/219 (80%), Gaps = 8/219 (3%)
Strand = Plus / Plus
Query: 153 ttgacgaaggctgcaaagctgcctgtaatgggccttacgatgggaaatggagtaaaacaa 212
||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||
Sbjct: 46036480 ttgacgagggctgcaaagctgcctgtaatgtg-------atgggaaatggtgtaaat-aa 46036531
Query: 213 tggtgggatttggacccgaggatgatcattttgttgctgaactgacgtacaattacggta 272
|||||||| || | || ||||||||||| |||||||| |||||| |||||||| || |
Sbjct: 46036532 tggtgggacttaggcctgaggatgatcactttgttgccaaactgaattacaattatggca 46036591
Query: 273 tcggaaactacaagcttggcaatgacttcatgggaatcacactcgcttctagccaggccg 332
|| || || ||| |||| | |||| ||| || | ||| ||||||||||| ||||| |
Sbjct: 46036592 tctgagtctgcaaacttgaaactgacatcacaggtaccacgctcgcttctagacaggctg 46036651
Query: 333 tcagcaacgccaggaagctggagtggccgctcagtgaag 371
||||||| |||||||| |||||||||| ||||||||||
Sbjct: 46036652 tcagcaagtccaggaaggtggagtggccactcagtgaag 46036690
Score = 65.9 bits (33), Expect = 6e-08
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1344 ctcccacattccttgcttttcaattttgagcagccagagaaaaca 1388
||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 45869005 ctcccacattccttgctttaaaattttgagtagccagagaaaaca 45868961
Score = 65.9 bits (33), Expect = 6e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1344 ctcccacattccttgcttttcaattttgagcagccagagaaaaca 1388
||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 46037582 ctcccacattccttgctttaaaattttgagtagccagagaaaaca 46037626
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,531,263
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 20
Length of query: 1451
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1430
Effective length of database: 2,808,413,156
Effective search space: 4016030813080
Effective search space used: 4016030813080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)