Animal-Genome cDNA 20110601C-002737

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus].          688   0.0  
Alignment   gi|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus].          518   e-147
Alignment   gi|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus].          436   e-122
Alignment   gi|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus].          327   2e-89
Alignment   gi|XP_002686339.1| PREDICTED: poly(rC) binding protein 1-like [...   210   2e-54
Alignment   gi|XP_001787630.2| PREDICTED: poly(rC) binding protein 1-like [...   210   2e-54
Alignment   gi|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [B...   100   4e-21
Alignment   gi|NP_001094687.1| far upstream element-binding protein 3 [Bos ...    85   2e-16
Alignment   gi|XP_001257255.3| PREDICTED: RNA-binding protein Nova-1-like [...    82   8e-16
Alignment   gi|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus].           76   6e-14

>ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus].
          Length = 356

 Score =  688 bits (1775), Expect = 0.0
 Identities = 349/350 (99%), Positives = 349/350 (99%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRCSDAAGYPHATHDLEG PLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 187  PASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQS 246

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 247  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 306

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 356


>ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus].
          Length = 349

 Score =  518 bits (1334), Expect = e-147
 Identities = 283/361 (78%), Positives = 305/361 (84%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+             A LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIG 288

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 289  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 348

Query: 1049 S 1051
            S
Sbjct: 349  S 349


>ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus].
          Length = 361

 Score =  436 bits (1121), Expect = e-122
 Identities = 243/358 (67%), Positives = 281/358 (78%), Gaps = 10/358 (2%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGE+VK++REESGARINISEGNCPERI+T+TGPT+
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMI  K EEDI +SM+NS A S+PPVTLRLVVPA+QCGSLIGKGG KIKEIRES
Sbjct: 67   AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERA+TI+G P ++ +CVKQIC+VMLE+    P+G   TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES---PPKG--ATIPYRPK 181

Query: 542  PASSPVICAGGQDRCSD-AAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQ 718
            PAS+PVI AGGQ R    AA   + +  L+  PL AY+IQGQ+ I   DL KL+Q+A QQ
Sbjct: 182  PASTPVIFAGGQVRADPLAASTANLSLLLQPPPLPAYTIQGQYAIPHPDLTKLHQLAMQQ 241

Query: 719  SHFAMM-HGGTGFAG------IDSSSPEVKGYWASLDAS-TQTTHELTIPNNLIGCIIGR 874
            + F  +      F G          +  + G  + LDAS   +THELTIPN+LIGCIIGR
Sbjct: 242  TPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGR 301

Query: 875  QGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE-KGMG 1045
            QG  INEIRQMSGAQIKIAN  EGSS RQ+TITG+ A+ISLAQYLINARL+SE  GMG
Sbjct: 302  QGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMG 359


>ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus].
          Length = 403

 Score =  327 bits (838), Expect = 2e-89
 Identities = 186/347 (53%), Positives = 235/347 (67%), Gaps = 2/347 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E  L++TLT+R+LMHGKEVGSIIGKKGE+VKRIRE+S ARI ISEG+CPERI T+TG T 
Sbjct: 11   EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA 70

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            A+F A +MI  KL+ED+ ++  N    SRPPVTLRLV+PA+QCGSLIGK G KIKEIRE+
Sbjct: 71   AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGD+LPNSTERA+T++GVP ++  CV+QIC V+LE+    P+G   TIPY P 
Sbjct: 131  TGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILES---PPKG--ATIPYHPS 185

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQH-TISPLDLAKLNQVARQQ 718
             +   V+ +  Q                       +S+QGQ+ T++P ++ KL Q++   
Sbjct: 186  LSLGTVLLSTNQ----------------------GFSVQGQYGTVTPAEVTKLQQLSGHA 223

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQT-THELTIPNNLIGCIIGRQGANINE 895
              FA              SP +      LD STQT + E  +PN+LIGC+IGRQG+ I+E
Sbjct: 224  VPFA--------------SPSMV---PGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISE 266

Query: 896  IRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 1036
            IRQMSGA IKI N  EG+  R VTITGS  SI+LAQYLI A L + K
Sbjct: 267  IRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAK 313


>ref|XP_002686339.1| PREDICTED: poly(rC) binding protein 1-like [Bos taurus].
          Length = 107

 Score =  210 bits (535), Expect = 2e-54
 Identities = 106/107 (99%), Positives = 106/107 (99%)
 Frame = +2

Query: 731  MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS 910
            MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS
Sbjct: 1    MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS 60

Query: 911  GAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
             AQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 61   RAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 107


>ref|XP_001787630.2| PREDICTED: poly(rC) binding protein 1-like [Bos taurus].
          Length = 107

 Score =  210 bits (535), Expect = 2e-54
 Identities = 106/107 (99%), Positives = 106/107 (99%)
 Frame = +2

Query: 731  MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS 910
            MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS
Sbjct: 1    MMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMS 60

Query: 911  GAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
             AQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 61   RAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 107


>ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus].
          Length = 464

 Score =  100 bits (248), Expect = 4e-21
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
 Frame = +2

Query: 29  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 208
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104

Query: 209 IDKLEEDINSSMTNSTAASRPPVT--------------------LRLVVPATQCGSLIGK 328
           I  LEE +   + + TA S+ P+                     LRL++  +  G +IG 
Sbjct: 105 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162

Query: 329 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 505
            G KIKE+RE+T   +++  +  P ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 163 KGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 218

Query: 506 QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPL 640
           +GR    PY P             D   D  G+     D  G P+
Sbjct: 219 KGRAQ--PYDP----------NFYDETYDYGGFTMMFDDRRGRPV 251



 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 42/98 (42%), Positives = 56/98 (57%)
 Frame = +2

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 898
            S + M +   G +G D S    +G +  L     TT ++TIP +L G IIG+ G  I +I
Sbjct: 355  SEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITT-QVTIPKDLAGSIIGKGGQRIKQI 413

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 1012
            R  SGA IKI  P+EGS  R +TITG+   I  AQYL+
Sbjct: 414  RHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 451


>ref|NP_001094687.1| far upstream element-binding protein 3 [Bos taurus].
          Length = 572

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 96/359 (26%), Positives = 147/359 (40%), Gaps = 34/359 (9%)
 Frame = +2

Query: 50   KEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA---FAMIID 214
            K VG IIG+ GE + RI+ ESG +I I+      PER   LTG   +I +A      I+D
Sbjct: 87   KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146

Query: 215  KLEEDI---NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ-VQV 382
            +        N    NST    P       +PA++ G +IGKGG  IK+++E TG + V +
Sbjct: 147  RCRNGPGFHNDVDGNSTVQEIP-------IPASKVGLVIGKGGETIKQLQERTGVKMVMI 199

Query: 383  AGDMLPNSTERAITIAGVPQSVTECVKQICLVMLE-----------TLSQSPQGRVMTIP 529
                LP   ++ + I G P  V +  + +  ++ E             S    G  + + 
Sbjct: 200  QDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVS 259

Query: 530  YQPMPASSPVICAGGQ--DRCSDAAGYPHATHDLEG-TPLDAYSIQG--------QHTIS 676
              P  A   VI   G+   +  + AG        +G +P  A  + G         H IS
Sbjct: 260  V-PRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHVIS 318

Query: 677  PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLI 856
             L L             A    G G   +       +G W+            T+P +  
Sbjct: 319  ELILT------------AQERDGFGGLAVARGRGRGRGDWSVGTPGGIQEVTYTVPADKC 366

Query: 857  GCIIGRQGANINEIRQMSGAQIKIAN---PVEGSSGRQVTITGSAASISLAQYLINARL 1024
            G +IG+ G NI  I Q SGA +++     P    + R  TI G    I +A++LI+ ++
Sbjct: 367  GLVIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARHLIDEKV 425


>ref|XP_001257255.3| PREDICTED: RNA-binding protein Nova-1-like [Bos taurus].
          Length = 385

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 22/360 (6%)
 Frame = +2

Query: 29   IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPERIITLTGPTNAIFKA 196
            +++++     G IIGK G +VK I E+SGA + +S+     N  ER++T++G      KA
Sbjct: 52   VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 111

Query: 197  FAMIIDKLEE-------------DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 337
              +II K++E             ++   + NS     P      V+P     + +  G  
Sbjct: 112  VELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL-LGHA 170

Query: 338  KIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRV 517
             +  +           G+ L   T    T+A    +            L TL        
Sbjct: 171  NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYN------------LNTLGLG----- 213

Query: 518  MTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKL 697
                       S     G     + +A    A  +L  T     S  G           L
Sbjct: 214  ----------LSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFAL 263

Query: 698  NQVARQQSHFAMMHGGTGFAGIDS--SSPEVKGYWASLDASTQTTHELTIPNNLIGCIIG 871
              +A      A      G+ G  S  ++  + G   S D S     E+ +P NL+G I+G
Sbjct: 264  GSLA------AATAATNGYFGAASPLAASAILGTEKSTDGSKDVV-EIAVPENLVGAILG 316

Query: 872  RQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSEKGM 1042
            + G  + E ++++GA+I+I+     V G+  R+VTITG+ A+   AQYLI  R++ E+G+
Sbjct: 317  KGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGV 376



 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
 Frame = +2

Query: 158 ITLTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVT------LRLVVPATQCGSL 319
           +  T P + +     +  D++++ + SS T + ++   P+T      ++++VP +  G +
Sbjct: 5   VAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLI 64

Query: 320 IGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSVTECVKQICLVMLETL 493
           IGKGG  +K I E +GA VQ++   D + N  ER +T++G P+   + V+    ++++ +
Sbjct: 65  IGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKAVE----LIIQKI 119

Query: 494 SQSPQ-GRVMTIPYQ----PMPASSP 556
            + PQ G  + I Y     P+  S+P
Sbjct: 120 QEDPQSGSCLNISYANVTGPVANSNP 145


>ref|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus].
          Length = 492

 Score = 76.3 bits (186), Expect = 6e-14
 Identities = 67/249 (26%), Positives = 112/249 (44%), Gaps = 41/249 (16%)
 Frame = +2

Query: 29  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 193
           +++L+     GSIIGK G+++ ++++E+GA I +S+         ER+  + G   A+  
Sbjct: 35  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 94

Query: 194 AFAMIIDKLEEDINSSMTNSTAAS--RPPVTL--------RLVVPATQCGSLIGKGGCKI 343
             + I +K+ E I  +MT     +  +P  T+        +L+VP +  G +IGKGG  +
Sbjct: 95  VHSFIAEKVRE-IPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATV 153

Query: 344 KEIRESTGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQI------------CL- 475
           K + E +GA VQ++    P   N  ER +T++G P+ V + V  I            CL 
Sbjct: 154 KAVMEQSGAWVQLS--QKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLN 211

Query: 476 -----VMLETLSQSPQGRVMTIPYQPMPASSPVICAG-----GQDRCSDAAGYPHATHDL 625
                V     + +P G     P   +PA++    A      G    +    +P A    
Sbjct: 212 ISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLGPAGLAGVGAFPAALPAF 271

Query: 626 EGTPLDAYS 652
            GT L A S
Sbjct: 272 SGTDLLAIS 280



 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 3/77 (3%)
 Frame = +2

Query: 830  ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVE---GSSGRQVTITGSAASISLA 1000
            E+ +P NL+G I+G+ G  + E ++++GA+I+I+   E   G+  R+VTITGS A+   A
Sbjct: 410  EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469

Query: 1001 QYLINARLSSEKGMGCS 1051
            QYLI+ R++ E+G+  S
Sbjct: 470  QYLISQRVTYEQGVRAS 486


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,489,722
Number of extensions: 1420366
Number of successful extensions: 4363
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4285
Number of HSP's successfully gapped: 40
Length of query: 455
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,174,046
Effective search space: 4946742054
Effective search space used: 4946742054
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_538537.1| PREDICTED: similar to Poly(rC)-binding protein ...   686   0.0  
Alignment   gi|XP_548937.2| PREDICTED: similar to Poly(rC)-binding protein ...   648   0.0  
Alignment   gi|XP_866435.1| PREDICTED: similar to Poly(rC)-binding protein ...   625   e-179
Alignment   gi|XP_857871.1| PREDICTED: similar to Poly(rC)-binding protein ...   556   e-158
Alignment   gi|XP_534789.2| PREDICTED: similar to Poly(rC)-binding protein ...   554   e-158
Alignment   gi|XP_857432.1| PREDICTED: similar to Poly(rC)-binding protein ...   546   e-155
Alignment   gi|XP_857910.1| PREDICTED: similar to Poly(rC)-binding protein ...   530   e-150
Alignment   gi|XP_857995.1| PREDICTED: similar to Poly(rC)-binding protein ...   523   e-148
Alignment   gi|XP_857557.1| PREDICTED: similar to Poly(rC)-binding protein ...   520   e-147
Alignment   gi|XP_857951.1| PREDICTED: similar to poly(rC) binding protein ...   518   e-147

>ref|XP_538537.1| PREDICTED: similar to Poly(rC)-binding protein 1 (Alpha-CP1)
            (hnRNP-E1) isoform 1 [Canis familiaris].
          Length = 356

 Score =  686 bits (1771), Expect = 0.0
 Identities = 348/350 (99%), Positives = 348/350 (99%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRC DAAGYPHATHDLEG PLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 187  PASSPVICAGGQDRCGDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQS 246

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 247  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 306

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 356


>ref|XP_548937.2| PREDICTED: similar to Poly(rC)-binding protein 1 (Alpha-CP1)
            (hnRNP-E1) [Canis familiaris].
          Length = 362

 Score =  648 bits (1672), Expect = 0.0
 Identities = 334/356 (93%), Positives = 337/356 (94%), Gaps = 6/356 (1%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ES LN TLTIRLLMH KEVGSIIGKKGES KR R+ESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESELNATLTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAF MIIDKLEEDINSSMTNSTAASRPPVTLRLVVPA QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFVMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPAYQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHA------THDLEGTPLDAYSIQGQHTISPLDLAKLNQ 703
            PASSPVICAGGQDR   AAGYPHA      TH LEG PLDAYSIQGQHT+SPLDLAKLNQ
Sbjct: 187  PASSPVICAGGQDRWGYAAGYPHAAGYPHDTHYLEGPPLDAYSIQGQHTVSPLDLAKLNQ 246

Query: 704  VARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGA 883
            VARQQSHFAMMHGGTGFAGIDS+SPEVKGYWASLDASTQTTHE TIPNNLIGCIIGRQGA
Sbjct: 247  VARQQSHFAMMHGGTGFAGIDSNSPEVKGYWASLDASTQTTHEFTIPNNLIGCIIGRQGA 306

Query: 884  NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  NINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 362


>ref|XP_866435.1| PREDICTED: similar to Poly(rC)-binding protein 1 (Alpha-CP1)
            (hnRNP-E1) isoform 2 [Canis familiaris].
          Length = 331

 Score =  625 bits (1613), Expect = e-179
 Identities = 323/350 (92%), Positives = 323/350 (92%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQ                         CVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQ-------------------------CVKQICLVMLETLSQSPQGRVMTIPYQPM 161

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRC DAAGYPHATHDLEG PLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 162  PASSPVICAGGQDRCGDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQS 221

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 222  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 281

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 282  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 331


>ref|XP_857871.1| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 17 [Canis familiaris].
          Length = 370

 Score =  556 bits (1434), Expect = e-158
 Identities = 296/364 (81%), Positives = 318/364 (87%), Gaps = 14/364 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQ---GRVMTIPY 532
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE   Q+     GR +TIPY
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLEVSPQAHAENGGRGVTIPY 186

Query: 533  QPMPASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLD 685
            +P P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   D
Sbjct: 187  RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 246

Query: 686  LAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGC 862
            L KL+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGC
Sbjct: 247  LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGC 306

Query: 863  IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-G 1039
            IIGRQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  G
Sbjct: 307  IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGG 366

Query: 1040 MGCS 1051
            MG S
Sbjct: 367  MGSS 370


>ref|XP_534789.2| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 1 [Canis familiaris].
          Length = 362

 Score =  554 bits (1427), Expect = e-158
 Identities = 295/361 (81%), Positives = 318/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 301

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 302  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 361

Query: 1049 S 1051
            S
Sbjct: 362  S 362


>ref|XP_857432.1| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 6 [Canis familiaris].
          Length = 467

 Score =  546 bits (1406), Expect = e-155
 Identities = 288/355 (81%), Positives = 312/355 (87%), Gaps = 10/355 (2%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 301

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 1036
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN  L + K
Sbjct: 302  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSLENAK 356


>ref|XP_857910.1| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 18 [Canis familiaris].
          Length = 348

 Score =  530 bits (1365), Expect = e-150
 Identities = 285/355 (80%), Positives = 309/355 (87%), Gaps = 5/355 (1%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVAR 712
            P+SSPVI AGGQDR    SD+A +PH T  +   P     ++G     PL+L KL+Q+A 
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNP----DLEG----PPLELTKLHQLAM 233

Query: 713  QQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANI 889
            QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA I
Sbjct: 234  QQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKI 293

Query: 890  NEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            NEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 294  NEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 348


>ref|XP_857995.1| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 20 [Canis familiaris].
          Length = 331

 Score =  523 bits (1347), Expect = e-148
 Identities = 281/352 (79%), Positives = 301/352 (85%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 182  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 219

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 220  HFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 279

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 280  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331


>ref|XP_857557.1| PREDICTED: similar to Poly(rC)-binding protein 2 (Alpha-CP2)
            (Putative heterogeneous nuclear ribonucleoprotein X)
            (hnRNP X) (CTBP) (CBP) isoform 9 [Canis familiaris].
          Length = 360

 Score =  520 bits (1339), Expect = e-147
 Identities = 285/364 (78%), Positives = 310/364 (85%), Gaps = 14/364 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAKLNQ 703
            P+SSPVI AGGQ R      +PH T       DLEG PL+AY+IQGQ+ I   DL KL+Q
Sbjct: 182  PSSSPVIFAGGQVR-----NFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQ 236

Query: 704  VARQQSHFAMMHGGTGFAGIDSS---SPEV---KGYWASLDASTQTT-HELTIPNNLIGC 862
            +A QQSHF M HG TGF+G+D+S   S E+   KG  + LDAS QTT HELTIPN+LIGC
Sbjct: 237  LAMQQSHFPMTHGNTGFSGMDTSVFISQEILSSKGEQSGLDASAQTTSHELTIPNDLIGC 296

Query: 863  IIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-G 1039
            IIGRQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  G
Sbjct: 297  IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGG 356

Query: 1040 MGCS 1051
            MG S
Sbjct: 357  MGSS 360


>ref|XP_857951.1| PREDICTED: similar to poly(rC) binding protein 2 isoform 19 [Canis
            familiaris].
          Length = 349

 Score =  518 bits (1334), Expect = e-147
 Identities = 283/361 (78%), Positives = 305/361 (84%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+             A LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIG 288

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 289  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 348

Query: 1049 S 1051
            S
Sbjct: 349  S 349


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,902,988
Number of extensions: 1471399
Number of successful extensions: 5270
Number of sequences better than 1.0e-05: 106
Number of HSP's gapped: 4875
Number of HSP's successfully gapped: 177
Length of query: 455
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 349
Effective length of database: 15,340,888
Effective search space: 5353969912
Effective search space used: 5353969912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens].           688   0.0  
Alignment   gi|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapi...   565   e-161
Alignment   gi|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo s...   558   e-159
Alignment   gi|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapi...   554   e-158
Alignment   gi|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo s...   548   e-156
Alignment   gi|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo s...   534   e-152
Alignment   gi|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo s...   523   e-148
Alignment   gi|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo s...   487   e-138
Alignment   gi|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapi...   419   e-117
Alignment   gi|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo s...   386   e-107

>ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens].
          Length = 356

 Score =  688 bits (1775), Expect = 0.0
 Identities = 349/350 (99%), Positives = 349/350 (99%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRCSDAAGYPHATHDLEG PLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 187  PASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQS 246

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 247  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 306

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 356


>ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens].
          Length = 366

 Score =  565 bits (1455), Expect = e-161
 Identities = 299/361 (82%), Positives = 321/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLETLSQSP  + +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPK 185

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 186  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 245

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 246  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 305

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 306  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 365

Query: 1049 S 1051
            S
Sbjct: 366  S 366


>ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens].
          Length = 365

 Score =  558 bits (1439), Expect = e-159
 Identities = 298/361 (82%), Positives = 320/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLETLSQSP  + +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPK 185

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 186  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 245

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYW  LDAS QTT HELTIPN+LIGCIIG
Sbjct: 246  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCIIG 304

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 305  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 364

Query: 1049 S 1051
            S
Sbjct: 365  S 365


>ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens].
          Length = 362

 Score =  554 bits (1427), Expect = e-158
 Identities = 295/361 (81%), Positives = 318/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 301

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 302  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 361

Query: 1049 S 1051
            S
Sbjct: 362  S 362


>ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens].
          Length = 361

 Score =  548 bits (1411), Expect = e-156
 Identities = 294/361 (81%), Positives = 317/361 (87%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYW  LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCIIG 300

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 301  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 360

Query: 1049 S 1051
            S
Sbjct: 361  S 361


>ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens].
          Length = 335

 Score =  534 bits (1375), Expect = e-152
 Identities = 285/352 (80%), Positives = 304/352 (86%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLETLSQSP  + +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPK 185

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 186  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 223

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 224  HFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 283

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 284  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 335


>ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens].
          Length = 331

 Score =  523 bits (1347), Expect = e-148
 Identities = 281/352 (79%), Positives = 301/352 (85%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 182  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 219

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 220  HFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 279

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 280  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331


>ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens].
          Length = 318

 Score =  487 bits (1254), Expect = e-138
 Identities = 269/352 (76%), Positives = 288/352 (81%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 182  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 219

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+             A LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 220  HFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 266

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 267  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 318


>ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens].
          Length = 371

 Score =  419 bits (1077), Expect = e-117
 Identities = 237/358 (66%), Positives = 272/358 (75%), Gaps = 10/358 (2%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGE+VK++REESGARINISEGNCPERI+T+TGPT+
Sbjct: 39   EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 98

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMI  K EEDI +SM+NS A S+PPVTLRLVVPA+QCGSLIGKGG KIKEIRES
Sbjct: 99   AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 158

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERA+TI+G P ++ +CVKQIC+VMLE+    P+G   TIPY+P 
Sbjct: 159  TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES---PPKG--ATIPYRPK 213

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTI-SPLDLAKLNQVARQQ 718
            PAS+PVI AGGQ                      AY+IQGQ+ I  P  L KL+Q+A QQ
Sbjct: 214  PASTPVIFAGGQ----------------------AYTIQGQYAIPHPDQLTKLHQLAMQQ 251

Query: 719  SHFAMM-HGGTGFAG------IDSSSPEVKGYWASLDAS-TQTTHELTIPNNLIGCIIGR 874
            + F  +      F G          +  + G  + LDAS   +THELTIPN+LIGCIIGR
Sbjct: 252  TPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGR 311

Query: 875  QGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE-KGMG 1045
            QG  INEIRQMSGAQIKIAN  EGSS RQ+TITG+ A+ISLAQYLINARL+SE  GMG
Sbjct: 312  QGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMG 369


>ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens].
          Length = 345

 Score =  386 bits (991), Expect = e-107
 Identities = 220/357 (61%), Positives = 251/357 (70%), Gaps = 9/357 (2%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGE+VK++REESGARINISEGNCPERI+T+TGPT+
Sbjct: 39   EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 98

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMI  K EEDI +SM+NS A S+PPVTLRLVVPA+QCGSLIGKGG KIKEIRES
Sbjct: 99   AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 158

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERA+TI+G P ++ +CVKQIC+VMLE                  
Sbjct: 159  TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE------------------ 200

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
                                              AY+IQGQ+ I   DL KL+Q+A QQ+
Sbjct: 201  ----------------------------------AYTIQGQYAIPHPDLTKLHQLAMQQT 226

Query: 722  HFAMM-HGGTGFAG------IDSSSPEVKGYWASLDAS-TQTTHELTIPNNLIGCIIGRQ 877
             F  +      F G          +  + G  + LDAS   +THELTIPN+LIGCIIGRQ
Sbjct: 227  PFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQ 286

Query: 878  GANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE-KGMG 1045
            G  INEIRQMSGAQIKIAN  EGSS RQ+TITG+ A+ISLAQYLINARL+SE  GMG
Sbjct: 287  GTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMG 343


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,829,329
Number of extensions: 1446854
Number of successful extensions: 4557
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 4387
Number of HSP's successfully gapped: 55
Length of query: 455
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 349
Effective length of database: 14,802,980
Effective search space: 5166240020
Effective search space used: 5166240020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus].           688   0.0  
Alignment   gi|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus mu...   554   e-158
Alignment   gi|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus mu...   523   e-148
Alignment   gi|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus muscu...   518   e-147
Alignment   gi|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus mu...   498   e-141
Alignment   gi|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus].           419   e-117
Alignment   gi|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus].           329   3e-90
Alignment   gi|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus ...   100   3e-21
Alignment   gi|NP_034743.3| far upstream element-binding protein 2 [Mus mus...    86   9e-17
Alignment   gi|NP_067336.1| RNA-binding protein Nova-1 [Mus musculus].            82   7e-16

>ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus].
          Length = 356

 Score =  688 bits (1775), Expect = 0.0
 Identities = 349/350 (99%), Positives = 349/350 (99%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRCSDAAGYPHATHDLEG PLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 187  PASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQS 246

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 247  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 306

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 356


>ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus].
          Length = 362

 Score =  554 bits (1427), Expect = e-158
 Identities = 295/361 (81%), Positives = 318/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 301

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 302  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 361

Query: 1049 S 1051
            S
Sbjct: 362  S 362


>ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus].
          Length = 331

 Score =  523 bits (1347), Expect = e-148
 Identities = 281/352 (79%), Positives = 301/352 (85%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 182  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 219

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 220  HFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 279

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 280  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331


>ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus].
          Length = 349

 Score =  518 bits (1334), Expect = e-147
 Identities = 283/361 (78%), Positives = 305/361 (84%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+             A LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIG 288

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 289  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 348

Query: 1049 S 1051
            S
Sbjct: 349  S 349


>ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus].
          Length = 322

 Score =  498 bits (1282), Expect = e-141
 Identities = 273/352 (77%), Positives = 291/352 (82%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLETLSQSP  + +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP-KGVTIPYRPK 185

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 186  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 223

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+             A LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 224  HFPMTHGNTGFS-------------AGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 270

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 271  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 322


>ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus].
          Length = 371

 Score =  419 bits (1077), Expect = e-117
 Identities = 237/358 (66%), Positives = 272/358 (75%), Gaps = 10/358 (2%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGE+VK++REESGARINISEGNCPERI+T+TGPT+
Sbjct: 39   EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 98

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMI  K EEDI +SM+NS A S+PPVTLRLVVPA+QCGSLIGKGG KIKEIRES
Sbjct: 99   AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 158

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERA+TI+G P ++ +CVKQIC+VMLE+    P+G   TIPY+P 
Sbjct: 159  TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES---PPKG--ATIPYRPK 213

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTI-SPLDLAKLNQVARQQ 718
            PAS+PVI AGGQ                      AY+IQGQ+ I  P  L KL+Q+A QQ
Sbjct: 214  PASTPVIFAGGQ----------------------AYTIQGQYAIPHPDQLTKLHQLAMQQ 251

Query: 719  SHFAMM-HGGTGFAG------IDSSSPEVKGYWASLDAS-TQTTHELTIPNNLIGCIIGR 874
            + F  +      F G          +  + G  + LDAS   +THELTIPN+LIGCIIGR
Sbjct: 252  TPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGR 311

Query: 875  QGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE-KGMG 1045
            QG  INEIRQMSGAQIKIAN  EGSS RQ+TITG+ A+ISLAQYLINARL+SE  GMG
Sbjct: 312  QGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMG 369


>ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus].
          Length = 403

 Score =  329 bits (844), Expect = 3e-90
 Identities = 190/362 (52%), Positives = 241/362 (66%), Gaps = 4/362 (1%)
 Frame = +2

Query: 11   LNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIF 190
            L++TLT+R+LMHGKEVGSIIGKKGE+VKRIRE+S ARI ISEG+CPERI T+TG T A+F
Sbjct: 14   LSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVF 73

Query: 191  KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 370
             A +MI  KL+ED+ ++  N  + SRPPVTLRLV+PA+QCGSLIGK G KIKEIRE+TGA
Sbjct: 74   HAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133

Query: 371  QVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPAS 550
            QVQVAGD+LPNSTERA+T++GVP ++  CV+QIC V+LE+    P+G   TIPY P  + 
Sbjct: 134  QVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILES---PPKG--ATIPYHPSLSL 188

Query: 551  SPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQH-TISPLDLAKLNQVARQQSHF 727
              V+ +  Q                       +S+QGQ+  ++P ++ KL Q++     F
Sbjct: 189  GTVLLSANQ----------------------GFSVQGQYGAVTPAEVTKLQQLSGHAVPF 226

Query: 728  AMMHGGTGFAGIDSSSPEVKGYWASLDASTQT-THELTIPNNLIGCIIGRQGANINEIRQ 904
            A              SP V      LD STQT + E  +PN+LIGC+IGRQG+ I+EIRQ
Sbjct: 227  A--------------SPSVV---PGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQ 269

Query: 905  MSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGM--GCS*NSVGSLIT 1078
            MSGA IKI N  EG+  R VTITGS  SI+LAQYLI A L + K    G   ++   L T
Sbjct: 270  MSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPT 329

Query: 1079 PF 1084
            PF
Sbjct: 330  PF 331


>ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus].
          Length = 463

 Score =  100 bits (249), Expect = 3e-21
 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 21/225 (9%)
 Frame = +2

Query: 29  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 208
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104

Query: 209 IDKLEEDINSSMTNSTAASRPPVT--------------------LRLVVPATQCGSLIGK 328
           I  LEE +   + + TA S+ P+                     LRL++  +  G +IG 
Sbjct: 105 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162

Query: 329 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 505
            G KIKE+RE+T   +++  +  P+ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 163 KGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIK----IILDLISESPI 218

Query: 506 QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPL 640
           +GR    PY P             D   D  G+     D  G P+
Sbjct: 219 KGRAQ--PYDP----------NFYDETYDYGGFTMMFDDRRGRPV 251



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 43/107 (40%), Positives = 58/107 (54%)
 Frame = +2

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 898
            S + M +   G +G D S    +G +  L     TT ++TIP +L G IIG+ G  I +I
Sbjct: 355  SEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITT-QVTIPKDLAGSIIGKGGQRIKQI 413

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKG 1039
            R  SGA IKI  P+EGS  R +TITG+   I  AQYL+   +    G
Sbjct: 414  RHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 460



 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +2

Query: 269 PPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSV 448
           P +T ++ +P    GS+IGKGG +IK+IR  +GA +++  + L  S +R ITI G    +
Sbjct: 386 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQI 444


>ref|NP_034743.3| far upstream element-binding protein 2 [Mus musculus].
          Length = 748

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 25/348 (7%)
 Frame = +2

Query: 56   VGSIIGKKGESVKRIREESGARINIS--EGNCPERIITLTGPTNAIFKAFAMIIDKLEED 229
            VG IIG+ GE + +I+++SG ++ IS   G  PER ++LTG   ++ KA  M+ D +   
Sbjct: 157  VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSRG 216

Query: 230  INS---SMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP 400
                     ++    +      +++PA + G +IGKGG  IK+++E  G ++ +  D   
Sbjct: 217  RGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ 276

Query: 401  N-STERAITIAGVPQSVTECVKQICLVMLETLSQSPQG----------RVMTIPYQPMPA 547
            N + ++ + I G P      V+Q C ++++ L +  QG          RV      P+P 
Sbjct: 277  NTNVDKPLRIIGDPYK----VQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPR 332

Query: 548  SSPVICAGGQ----DRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQ 715
             S  +  G       +  + AG        +GT  +  +    H + P D  +       
Sbjct: 333  HSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIA----HIMGPPDRCEHAARIIN 388

Query: 716  QSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELT--IPNNLIGCIIGRQGANI 889
                ++  G  G  G     P  +G             E+T  IP +  G +IGR G N+
Sbjct: 389  DLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENV 448

Query: 890  NEIRQMSGAQIKIAN--PVEGSSG-RQVTITGSAASISLAQYLINARL 1024
              I Q +GA ++I+   P  G    +   I GS   I  A+ LI  ++
Sbjct: 449  KAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496



 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 20/222 (9%)
 Frame = +2

Query: 56  VGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKAFAMIIDKLEED 229
           VG +IG+ GE +K+I+ ++G RI   +  G  PE+I  + GP +    A  +I D L+  
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 394

Query: 230 INSSMTNSTAASRPPV----------------TLRLVVPATQCGSLIGKGGCKIKEIRES 361
            +       A   PP                  +   +P  +CG +IG+GG  +K I + 
Sbjct: 395 RSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQ 454

Query: 362 TGAQVQVAGDMLPNSTE--RAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQ 535
           TGA V+++  + PN     +   I G PQ +    +     ++E   + P   V   P  
Sbjct: 455 TGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQ-----LIEEKIEGPLCPVGPGPGG 509

Query: 536 PMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQG 661
           P PA        G          PHA     G P   Y  QG
Sbjct: 510 PGPAGPMGPFNPGPFNQGPPGAPPHA----GGPPPHQYPPQG 547



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 26/75 (34%), Positives = 46/75 (61%)
 Frame = +2

Query: 815  TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 994
            T  T E  +P+ ++G IIGR G  IN+I+Q SG +++I+    G   R V++TG+  S+ 
Sbjct: 144  TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203

Query: 995  LAQYLINARLSSEKG 1039
             A+ +++  +S  +G
Sbjct: 204  KAKMMLDDIVSRGRG 218



 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 5/197 (2%)
 Frame = +2

Query: 8   GLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI----SEGNCPERIITLTGP 175
           G N T+   ++  GK  G +IGK GE++K+++E +G ++ +    S+    ++ + + G 
Sbjct: 231 GQNGTVQEIMIPAGK-AGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD 289

Query: 176 TNAIFKAFAMIIDKL-EEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEI 352
              + +A  M++D L E D       +   SR    + + VP    G +IG+ G  IK+I
Sbjct: 290 PYKVQQACEMVMDILRERDQGGFGDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKI 349

Query: 353 RESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPY 532
           +   G ++Q   D      E+   I G P    E   +I   +L++L   P G       
Sbjct: 350 QNDAGVRIQFKQDD-GTGPEKIAHIMGPPDR-CEHAARIINDLLQSLRSGPPG------- 400

Query: 533 QPMPASSPVICAGGQDR 583
              P  +P +  GG+ R
Sbjct: 401 ---PPGAPGMPPGGRGR 414


>ref|NP_067336.1| RNA-binding protein Nova-1 [Mus musculus].
          Length = 507

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 22/360 (6%)
 Frame = +2

Query: 29   IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG----NCPERIITLTGPTNAIFKA 196
            +++++     G IIGK G +VK I E+SGA + +S+     N  ER++T++G      KA
Sbjct: 174  VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233

Query: 197  FAMIIDKLEE-------------DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGC 337
              +II K++E             ++   + NS     P      V+P     + +  G  
Sbjct: 234  VELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL-LGHA 292

Query: 338  KIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRV 517
             +  +           G+ L   T    T+A    +            L TL        
Sbjct: 293  NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYN------------LNTLGLG----- 335

Query: 518  MTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKL 697
                       S     G     + +A    A  +L  T     S  G           L
Sbjct: 336  ----------LSQAAATGALAAAAASANPAAAAANLLATYASEASASGSTAGGTAGTFAL 385

Query: 698  NQVARQQSHFAMMHGGTGFAGIDS--SSPEVKGYWASLDASTQTTHELTIPNNLIGCIIG 871
              +A      A      G+ G  S  ++  + G   S D S     E+ +P NL+G I+G
Sbjct: 386  GSLA------AATAATNGYFGAASPLAASAILGTEKSTDGSKDVV-EIAVPENLVGAILG 438

Query: 872  RQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSEKGM 1042
            + G  + E ++++GA+I+I+     V G+  R+VTITG+ A+   AQYLI  R++ E+G+
Sbjct: 439  KGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYEQGV 498



 Score = 69.7 bits (169), Expect = 5e-12
 Identities = 56/221 (25%), Positives = 106/221 (47%), Gaps = 45/221 (20%)
 Frame = +2

Query: 29  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGN-----CPERIITLTGPTNAIFK 193
           +++L+     GSIIGK G+++ ++++E+GA I +S+         ER+  + G   A+  
Sbjct: 52  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 111

Query: 194 AFAMIIDKLEE---------------------------DINSSMTNSTAASRPPVT---- 280
               I +K+ E                            + SS T + ++   P+T    
Sbjct: 112 VHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRA 171

Query: 281 --LRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVA--GDMLPNSTERAITIAGVPQSV 448
             ++++VP +  G +IGKGG  +K I E +GA VQ++   D + N  ER +T++G P+  
Sbjct: 172 NQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQN 230

Query: 449 TECVKQICLVMLETLSQSPQ-GRVMTIPYQ----PMPASSP 556
            + V+    ++++ + + PQ G  + I Y     P+  S+P
Sbjct: 231 RKAVE----LIIQKIQEDPQSGSCLNISYANVTGPVANSNP 267


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,546,300
Number of extensions: 1212004
Number of successful extensions: 3710
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 3617
Number of HSP's successfully gapped: 32
Length of query: 455
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 350
Effective length of database: 12,463,779
Effective search space: 4362322650
Effective search space used: 4362322650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [...   690   0.0  
Alignment   gi|XP_003126241.1| PREDICTED: poly(rC)-binding protein 2 isofor...   554   e-158
Alignment   gi|XP_003355457.1| PREDICTED: poly(rC)-binding protein 2 isofor...   523   e-149
Alignment   gi|XP_003125101.2| PREDICTED: poly(rC)-binding protein 1-like, ...   391   e-109
Alignment   gi|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like i...   323   1e-88
Alignment   gi|XP_003354834.1| PREDICTED: poly(rC)-binding protein 1-like [...   301   6e-82
Alignment   gi|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like i...   244   1e-64
Alignment   gi|XP_003359061.1| PREDICTED: hypothetical protein LOC100624867...   179   3e-45
Alignment   gi|XP_003357758.1| PREDICTED: heterogeneous nuclear ribonucleop...   100   2e-21
Alignment   gi|XP_003122291.2| PREDICTED: far upstream element-binding prot...    86   4e-17

>ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa].
          Length = 356

 Score =  690 bits (1781), Expect = 0.0
 Identities = 350/350 (100%), Positives = 350/350 (100%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 186

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS
Sbjct: 187  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 246

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 901
            HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR
Sbjct: 247  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIR 306

Query: 902  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 1051
            QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS
Sbjct: 307  QMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGCS 356


>ref|XP_003126241.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Sus scrofa].
          Length = 362

 Score =  554 bits (1427), Expect = e-158
 Identities = 295/361 (81%), Positives = 318/361 (88%), Gaps = 11/361 (3%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRC---SDAAGYPHAT------HDLEGTPLDAYSIQGQHTISPLDLAK 694
            P+SSPVI AGGQDR    SD+A +PH T       DLEG PL+AY+IQGQ+ I   DL K
Sbjct: 182  PSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241

Query: 695  LNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIG 871
            L+Q+A QQSHF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIG
Sbjct: 242  LHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIG 301

Query: 872  RQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGC 1048
            RQGA INEIRQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG 
Sbjct: 302  RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 361

Query: 1049 S 1051
            S
Sbjct: 362  S 362


>ref|XP_003355457.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Sus scrofa].
          Length = 331

 Score =  523 bits (1347), Expect = e-149
 Identities = 281/352 (79%), Positives = 301/352 (85%), Gaps = 2/352 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E GLNVTLTIRLLMHGKEVGSIIGKKGESVK++REESGARINISEGNCPERIITL GPTN
Sbjct: 7    EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTN 66

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            AIFKAFAMIIDKLEEDI+SSMTNSTAASRPPVTLRLVVPA+QCGSLIGKGGCKIKEIRES
Sbjct: 67   AIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGDMLPNSTERAITIAG+PQS+ ECVKQIC+VMLE+    P+G  +TIPY+P 
Sbjct: 127  TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VTIPYRPK 181

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQHTISPLDLAKLNQVARQQS 721
            P+SSPVI AGGQ                      AY+IQGQ+ I   DL KL+Q+A QQS
Sbjct: 182  PSSSPVIFAGGQ----------------------AYTIQGQYAIPQPDLTKLHQLAMQQS 219

Query: 722  HFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNLIGCIIGRQGANINEI 898
            HF M HG TGF+GI+SSSPEVKGYWA LDAS QTT HELTIPN+LIGCIIGRQGA INEI
Sbjct: 220  HFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEI 279

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK-GMGCS 1051
            RQMSGAQIKIANPVEGS+ RQVTITGSAASISLAQYLIN RLSSE  GMG S
Sbjct: 280  RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS 331


>ref|XP_003125101.2| PREDICTED: poly(rC)-binding protein 1-like, partial [Sus scrofa].
          Length = 194

 Score =  391 bits (1004), Expect = e-109
 Identities = 194/194 (100%), Positives = 194/194 (100%)
 Frame = +2

Query: 470  CLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAY 649
            CLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAY
Sbjct: 1    CLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAY 60

Query: 650  SIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTH 829
            SIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTH
Sbjct: 61   SIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTH 120

Query: 830  ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 1009
            ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL
Sbjct: 121  ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYL 180

Query: 1010 INARLSSEKGMGCS 1051
            INARLSSEKGMGCS
Sbjct: 181  INARLSSEKGMGCS 194


>ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa].
          Length = 403

 Score =  323 bits (829), Expect = 1e-88
 Identities = 184/347 (53%), Positives = 233/347 (67%), Gaps = 2/347 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E  L++TLT+R+LMHGKEVGSIIGKKGE+VKRIRE+S ARI ISEG+CPERI T+TG T 
Sbjct: 11   EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA 70

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            A+F A +MI  KL+ED+ ++  N    SRPPVTLRLV+PA+QCGSLIGK G KIKEIRE+
Sbjct: 71   AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
            TGAQVQVAGD+LPNSTERA+T++GVP ++  CV+QIC V+LE+    P+G   TIPY P 
Sbjct: 131  TGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILES---PPKG--ATIPYHPS 185

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQH-TISPLDLAKLNQVARQQ 718
             +   V+ +  Q                       +S+QGQ+  ++P ++ KL Q++   
Sbjct: 186  LSLGTVLLSTNQ----------------------GFSVQGQYGAVTPAEVTKLQQLSGHA 223

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQT-THELTIPNNLIGCIIGRQGANINE 895
              FA              SP +      LD  TQT + E  +PN+LIGC+IGRQG+ I+E
Sbjct: 224  VPFA--------------SPSMV---PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISE 266

Query: 896  IRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 1036
            IRQMSGA IKI N  EG+  R VTITGS  SI+LAQYLI A L + K
Sbjct: 267  IRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAK 313


>ref|XP_003354834.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa].
          Length = 193

 Score =  301 bits (771), Expect = 6e-82
 Identities = 156/173 (90%), Positives = 161/173 (93%)
 Frame = +2

Query: 2   ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
           ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN
Sbjct: 7   ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 66

Query: 182 AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
           AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES
Sbjct: 67  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 126

Query: 362 TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVM 520
           TGAQVQVAGDMLPNSTERAITIAGVPQSVTEC++ + L   E   Q   G ++
Sbjct: 127 TGAQVQVAGDMLPNSTERAITIAGVPQSVTECLEDLMLRPAEAEQQKQLGPLL 179


>ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa].
          Length = 360

 Score =  244 bits (622), Expect = 1e-64
 Identities = 155/347 (44%), Positives = 194/347 (55%), Gaps = 2/347 (0%)
 Frame = +2

Query: 2    ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTN 181
            E  L++TLT+R+LMHGKEVGSIIGKKGE+VKRIRE+S ARI ISEG+CPERI T+TG T 
Sbjct: 11   EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA 70

Query: 182  AIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRES 361
            A+F A +MI  KL+ED+ ++  N    SRPPVTLRLV+PA+QCGSLIGK G KIKEIRES
Sbjct: 71   AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRES 130

Query: 362  TGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPM 541
                                                           P+G   TIPY P 
Sbjct: 131  ----------------------------------------------PPKG--ATIPYHPS 142

Query: 542  PASSPVICAGGQDRCSDAAGYPHATHDLEGTPLDAYSIQGQH-TISPLDLAKLNQVARQQ 718
             +   V+ +  Q                       +S+QGQ+  ++P ++ KL Q++   
Sbjct: 143  LSLGTVLLSTNQ----------------------GFSVQGQYGAVTPAEVTKLQQLSGHA 180

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQT-THELTIPNNLIGCIIGRQGANINE 895
              FA              SP +      LD  TQT + E  +PN+LIGC+IGRQG+ I+E
Sbjct: 181  VPFA--------------SPSMV---PGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISE 223

Query: 896  IRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 1036
            IRQMSGA IKI N  EG+  R VTITGS  SI+LAQYLI A L + K
Sbjct: 224  IRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAK 270


>ref|XP_003359061.1| PREDICTED: hypothetical protein LOC100624867 [Sus scrofa].
          Length = 670

 Score =  179 bits (454), Expect = 3e-45
 Identities = 109/220 (49%), Positives = 133/220 (60%), Gaps = 1/220 (0%)
 Frame = +2

Query: 71  GKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEEDINSSMTN 250
           G+KGE+VK++REESGARINISEGNCPERI+T+TGPT+AIFKAFAMI  K EE +      
Sbjct: 388 GEKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEFL------ 441

Query: 251 STAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 430
                                              +STGAQVQVAGDMLPNSTERA+TI+
Sbjct: 442 -----------------------------------QSTGAQVQVAGDMLPNSTERAVTIS 466

Query: 431 GVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPH 610
           G P ++ +CVKQIC+VMLE+    P+G   TIPY+P PAS+PVI AGGQ           
Sbjct: 467 GTPDAIIQCVKQICVVMLES---PPKG--ATIPYRPKPASTPVIFAGGQ----------- 510

Query: 611 ATHDLEGTPLDAYSIQGQHTI-SPLDLAKLNQVARQQSHF 727
                      AY+IQGQ+ I  P  L KL+Q+A QQ+ F
Sbjct: 511 -----------AYTIQGQYAIPHPDQLTKLHQLAMQQTPF 539


>ref|XP_003357758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Sus
           scrofa].
          Length = 466

 Score =  100 bits (248), Expect = 2e-21
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 21/225 (9%)
 Frame = +2

Query: 29  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 208
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 47  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 106

Query: 209 IDKLEEDINSSMTNSTAASRPPVT--------------------LRLVVPATQCGSLIGK 328
           I  LEE +   + + TA S+ P+                     LRL++  +  G +IG 
Sbjct: 107 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 164

Query: 329 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 505
            G KIKE+RE+T   +++  +  P ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 165 KGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 220

Query: 506 QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPL 640
           +GR    PY P             D   D  G+     D  G P+
Sbjct: 221 KGRAQ--PYDP----------NFYDETYDYGGFTMMFDDRRGRPV 253



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 42/98 (42%), Positives = 56/98 (57%)
 Frame = +2

Query: 719  SHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 898
            S + M +   G +G D S    +G +  L     TT ++TIP +L G IIG+ G  I +I
Sbjct: 357  SEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITT-QVTIPKDLAGSIIGKGGQRIKQI 415

Query: 899  RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLI 1012
            R  SGA IKI  P+EGS  R +TITG+   I  AQYL+
Sbjct: 416  RHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 453



 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +2

Query: 269 PPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSV 448
           P +T ++ +P    GS+IGKGG +IK+IR  +GA +++  + L  S +R ITI G    +
Sbjct: 388 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQI 446


>ref|XP_003122291.2| PREDICTED: far upstream element-binding protein 3 [Sus scrofa].
          Length = 572

 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 98/369 (26%), Positives = 153/369 (41%), Gaps = 37/369 (10%)
 Frame = +2

Query: 50   KEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA---FAMIID 214
            K VG IIG+ GE + RI+ ESG +I I+      PER   LTG   +I +A      I+D
Sbjct: 87   KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVD 146

Query: 215  K------LEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ- 373
            +         D++ S T             L++PA++ G +IGKGG  IK+++E TG + 
Sbjct: 147  RCRNGPGFHNDVDGSSTIQ----------ELLIPASKVGLVIGKGGETIKQLQERTGVKM 196

Query: 374  VQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLE-----------TLSQSPQGRVM 520
            V +    LP   ++ + I G P  V +  + +  ++ E             S    G  +
Sbjct: 197  VMIQDGPLPTGADKPLRITGDPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSI 256

Query: 521  TIPYQPMPASSPVICAGGQ--DRCSDAAGYPHATHDLEG-TPLDAYSIQG--------QH 667
             +   P  A   VI   G+   +  + AG        +G +P  A  + G         H
Sbjct: 257  EVSV-PRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAH 315

Query: 668  TISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPN 847
             IS L L             A    G G   +       +G W+            T+P 
Sbjct: 316  VISELILT------------AQERDGFGGLAVARGRGRGRGDWSVGTPGGIQEITYTVPA 363

Query: 848  NLIGCIIGRQGANINEIRQMSGAQIKI-ANPVEGSSG--RQVTITGSAASISLAQYLINA 1018
            +  G +IG+ G NI  I Q SGA +++  NP   +    R  TI G    I +A++LI+ 
Sbjct: 364  DKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEVARHLIDE 423

Query: 1019 RLSSEKGMG 1045
            ++    G+G
Sbjct: 424  KVGG-SGLG 431



 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
 Frame = +2

Query: 35  LLMHGKEVGSIIGKKGESVKRIREESGAR-INISEGNCP---ERIITLTGPTNAIFKAFA 202
           LL+   +VG +IGK GE++K+++E +G + + I +G  P   ++ + +TG    + +A  
Sbjct: 167 LLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDPFKVQQARE 226

Query: 203 MIIDKLEEDINS---SMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 373
           M+++ + E   +    +    ++     ++ + VP    G +IG+ G  IK+I+   G +
Sbjct: 227 MVLEIIREKDQADFRGVRGDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVR 286

Query: 374 VQVAGDMLPNSTERAITIAGVP---QSVTECVKQICLVMLE 487
           +Q   D    S ERA  + G P   Q     + ++ L   E
Sbjct: 287 IQFKPDD-GISPERAAQVMGPPDRCQHAAHVISELILTAQE 326


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,876,746
Number of extensions: 912504
Number of successful extensions: 2839
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2770
Number of HSP's successfully gapped: 36
Length of query: 455
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 353
Effective length of database: 8,804,438
Effective search space: 3107966614
Effective search space used: 3107966614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002737
         (1365 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                        2385   0.0  
Sscrofa_Chr15                                                         268   7e-69
Sscrofa_Chr04                                                         238   7e-60
Sscrofa_Chr05                                                         198   6e-48
Sscrofa_Chr13                                                         145   7e-32
Sscrofa_Chr01                                                         105   6e-20

>Sscrofa_Chr03 
||          Length = 144787322

 Score = 2385 bits (1203), Expect = 0.0
 Identities = 1308/1335 (97%), Gaps = 6/1335 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1        tgaaagtggactaaatgtgactctcaccattcggctgcttatgcacggaaaggaagtagg 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815338 tgaaagtggactaaatgtgactctcaccattcggctgcttatgcacggaaaggaagtagg 75815279

                                                                            
Query: 61       aagcattattgggaagaaaggggagtcggttaagaggatccgcgaggagagtggcgcgcg 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815278 aagcattattgggaagaaaggggagtcggttaagaggatccgcgaggagagtggcgcgcg 75815219

                                                                            
Query: 121      gatcaacatctcggaggggaattgtccggagagaatcatcactctgaccggccccaccaa 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815218 gatcaacatctcggaggggaattgtccggagagaatcatcactctgaccggccccaccaa 75815159

                                                                            
Query: 181      tgccatctttaaggccttcgctatgatcatcgacaagctggaagaagatatcaacagctc 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815158 tgccatctttaaggccttcgctatgatcatcgacaagctggaagaagatatcaacagctc 75815099

                                                                            
Query: 241      catgaccaacagcacggcggccagcaggcccccggtcaccctgaggctcgtggtgccggc 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815098 catgaccaacagcacggcggccagcaggcccccggtcaccctgaggctcgtggtgccggc 75815039

                                                                            
Query: 301      cacccagtgcggctccctgattgggaaaggcggctgtaagatcaaagagatccgcgagag 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75815038 cacccagtgcggctccctgattgggaaaggcggctgtaagatcaaagagatccgcgagag 75814979

                                                                            
Query: 361      tacgggggcccaggtccaggtggcgggggatatgctgcccaactctaccgagcgggccat 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814978 tacgggggcccaggtccaggtggcgggggatatgctgcccaactctaccgagcgggccat 75814919

                                                                            
Query: 421      caccattgctggcgtgccgcagtctgtcaccgagtgtgtcaagcagatctgcctggtcat 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814918 caccattgctggcgtgccgcagtctgtcaccgagtgtgtcaagcagatctgcctggtcat 75814859

                                                                            
Query: 481      gctggagacgctctcccagtctccgcaagggagagtcatgaccattccgtaccagcccat 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814858 gctggagacgctctcccagtctccgcaagggagagtcatgaccattccgtaccagcccat 75814799

                                                                            
Query: 541      gccggccagctctccggtcatctgcgcgggcggccaagatcggtgcagcgacgctgcggg 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814798 gccggccagctctccggtcatctgcgcgggcggccaagatcggtgcagcgacgctgcggg 75814739

                                                                            
Query: 601      ctaccctcatgccacccatgacctggagggaacacctctagatgcctactcgattcaagg 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814738 ctaccctcatgccacccatgacctggagggaacacctctagatgcctactcgattcaagg 75814679

                                                                            
Query: 661      acaacacaccatttctccgctcgatctggccaagctgaaccaggtggcaagacaacagtc 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814678 acaacacaccatttctccgctcgatctggccaagctgaaccaggtggcaagacaacagtc 75814619

                                                                            
Query: 721      tcactttgccatgatgcacggcgggaccggattcgccggaattgactccagctctccaga 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814618 tcactttgccatgatgcacggcgggaccggattcgccggaattgactccagctctccaga 75814559

                                                                            
Query: 781      ggtgaaaggctattgggcaagtttggatgcatctactcaaaccacccatgaactcaccat 840
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814558 ggtgaaaggctattgggcaagtttggatgcatctactcaaaccacccatgaactcaccat 75814499

                                                                            
Query: 841      tccaaataacttaattggctgcataatcgggcgccaaggcgccaacattaatgagatccg 900
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814498 tccaaataacttaattggctgcataatcgggcgccaaggcgccaacattaatgagatccg 75814439

                                                                            
Query: 901      ccagatgtccggggcccagatcaaaattgccaatccagtggaaggctcttctggtaggca 960
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814438 ccagatgtccggggcccagatcaaaattgccaatccagtggaaggctcttctggtaggca 75814379

                                                                            
Query: 961      ggttactatcactggttctgctgccagtattagtctggcccaatatctaatcaatgccag 1020
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814378 ggttactatcactggttctgctgccagtattagtctggcccaatatctaatcaatgccag 75814319

                                                                            
Query: 1021     gctttcctctgagaagggcatggggtgcagctagaacagtgtaggttcactcataacccc 1080
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814318 gctttcctctgagaagggcatggggtgcagctagaacagtgtaggttcactcataacccc 75814259

                                                                            
Query: 1081     tttctgctgtttt-ccatgatccaactgtgtaatttctggtcagtgattccaggttttaa 1139
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75814258 tttctgctgttttcccatgatccaactgtgtaatttctggtcagtgattccaggttttaa 75814199

                                                                            
Query: 1140     ataatttgtaagtgttcagtttctacacaactttatcacccgctaagattttaaaaatca 1199
                |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 75814198 ataatttgtaagtgttcagtttctacacaactttatcatccgctaagaatttaaaaatca 75814139

                                                                            
Query: 1200     catttctcggttcaactgtaatggctgggaatcaaattta-tttta-aaacctttcccgg 1257
                || ||||| ||||| |||| |  ||||||| ||| ||||| ||||| || | |||||| |
Sbjct: 75814138 ca-ttctctgttcagctgttaatgctgggattcatatttagttttataagcttttccctg 75814080

                                                                            
Query: 1258     gtttaagttttgttttggggttttggcccatgaa-tttctggttggcaataaaaaatgt- 1315
                 ||| |||||||||||||| ||||||| |||||| |||||| ||| | |||| |||||| 
Sbjct: 75814079 tttttagttttgttttgggtttttggctcatgaattttctgtttgtcgataagaaatgta 75814020

                               
Query: 1316     agaatggaatgttaa 1330
                ||| |||||||||||
Sbjct: 75814019 agagtggaatgttaa 75814005


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  268 bits (135), Expect = 7e-69
 Identities = 356/428 (83%), Gaps = 15/428 (3%)
 Strand = Plus / Plus

                                                                           
Query: 775     tccagaggtgaaaggctattgggcaagtttggatgcatctactcaaaccacccatgaact 834
               ||||||| ||||| | || |||||| || ||| |||||||||||||||| || ||| |||
Sbjct: 6673245 tccagagttgaaaagttagtgggcaggtgtgggtgcatctactcaaaccgcc-atgtact 6673303

                                                                           
Query: 835     caccattccaaataacttaattggctgcataatcgggcgccaaggcgccaacattaatga 894
               || |||||||||||||||||||||||||| |||| | | |||||| ||||||||||||||
Sbjct: 6673304 catcattccaaataacttaattggctgcacaatcagacaccaaggtgccaacattaatga 6673363

                                                                           
Query: 895     gatccgccagatgtccggggcccagatcaaaattgccaatccagtggaaggctcttctgg 954
               |||||||||||| ||| ||||| ||||||||||||||||||  || ||||||||||||||
Sbjct: 6673364 gatccgccagatatccagggccaagatcaaaattgccaatctggtagaaggctcttctgg 6673423

                                                                           
Query: 955     taggcaggttactatcactggttctgctgccagtattagtctggcccaatatctaatcaa 1014
               |||||         | ||||| |||| ||||| |||||||||  ||||||||||||||||
Sbjct: 6673424 taggc---------ttactgggtctgttgccaatattagtcttacccaatatctaatcaa 6673474

                                                                           
Query: 1015    tgccaggctttcctctgagaagggcatggggtgcagctagaacagtgtaggttcactcat 1074
               || |||  |||||  ||| ||  |||||||||| ||||  |||||||||| |||||||| 
Sbjct: 6673475 tgtcagagtttcccatgaaaacagcatggggtgaagcttcaacagtgtagattcactcac 6673534

                                                                           
Query: 1075    aacccctttctgctgtt---tt--ccatgatccaactgtgtaatttctggtcagtgattc 1129
               ||| ||||||||  |||   ||   |||||||||| ||| ||| ||||||| ||| ||| 
Sbjct: 6673535 aactcctttctgaagttggattactcatgatccaaatgtataacttctggtaagtaattt 6673594

                                                                           
Query: 1130    caggttttaaataatttgtaagtgttcagtttctacacaactttatcacccgctaagatt 1189
               |||||||||||||||| |||||| ||||||||||| |||| ||||||| || |||||| |
Sbjct: 6673595 caggttttaaataattcgtaagttttcagtttctatacaaatttatcatccactaagaat 6673654

                       
Query: 1190    ttaaaaat 1197
               ||||||||
Sbjct: 6673655 ttaaaaat 6673662


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  238 bits (120), Expect = 7e-60
 Identities = 603/760 (79%), Gaps = 8/760 (1%)
 Strand = Plus / Minus

                                                                             
Query: 445       tgtcaccgagtgtgtcaagcagatctgcctggtcatgctggagacgctctcccagtctcc 504
                 |||||||||||||| |||||||||  | |||||||||||||||| |||||||| ||||||
Sbjct: 134985934 tgtcaccgagtgtgccaagcagattggtctggtcatgctggagatgctctccccgtctcc 134985875

                                                                             
Query: 505       gcaagggagagtcatgaccattccgtaccagcccatgccggccagctctccggtcatctg 564
                  ||| |||||| ||||||||||  |||||||||  |||| | | ||||     |||||||
Sbjct: 134985874 acaatggagagccatgaccattttgtaccagcctgtgccagacggctccttaatcatctg 134985815

                                                                             
Query: 565       cgcgggcggccaagatcggtgcagcgacgctgcgggctaccctcatgccacccatgacct 624
                  | ||||||||| | |||||||||||| |||||||||  ||| | ||||| |||||||||
Sbjct: 134985814 tgagggcggccacgttcggtgcagcgatgctgcgggcggcccccttgccatccatgacct 134985755

                                                                             
Query: 625       ggagggaacacctctagatgcctactcgattcaaggacaacacaccatttctccgctcga 684
                 ||      |||||| |||||||||||| || || |||||||||||||   |||| | |  
Sbjct: 134985754 gggtcccccacctccagatgcctactcaatccagggacaacacaccaggcctccaccccg 134985695

                                                                             
Query: 685       tctggccaagctgaaccaggtggcaagacaacagtctcactttgccatgatgcacggcgg 744
                 |   ||  |||||  |||||||||||||| ||    || ||||||| |||||||| | | 
Sbjct: 134985694 ttcagctgagctgggccaggtggcaagaccacgccttccctttgccgtgatgcacagtga 134985635

                                                                             
Query: 745       gaccggattcgccggaattgactccagctctccagaggtgaaaggctattgggcaagttt 804
                  |     || ||| |||   || || ||| ||||||| | ||||||| |||||| ||  |
Sbjct: 134985634 aa-----tttgccagaacaaacgcccgctttccagagataaaaggctcttgggcgagact 134985580

                                                                             
Query: 805       ggatgcatctactcaaaccacccatgaactcaccattccaaataacttaattggctgcat 864
                 |||||||| || |||||||  || ||||||| |||||| ||||| |||||  |||| |||
Sbjct: 134985579 ggatgcatttagtcaaaccgaccgtgaactcgccattctaaatagcttaacaggctacat 134985520

                                                                             
Query: 865       aatcgggcgccaaggcgccaacattaatgagatccgccagatgtccggggcccagatcaa 924
                   || ||| || |||| ||| |||||| |||||| |||||| |||| |||||||||||||
Sbjct: 134985519 ggtcaggcaccgaggcaccagcattaaggagatctgccagaggtccagggcccagatcaa 134985460

                                                                             
Query: 925       aattgccaatccagtggaaggctcttctggtaggcaggttactatcactggttctgctgc 984
                 ||  ||||| ||| || |||||||| |||||||| ||  | ||||| ||||||||  |||
Sbjct: 134985459 aaccgccaacccaatgcaaggctctcctggtagg-agagtcctatccctggttct-ttgc 134985402

                                                                             
Query: 985       cagtattagtctggcccaatatctaatcaatgccaggctttcctctgagaagggcatggg 1044
                 |||||||   ||||||||   ||||| |||||| |||||||||| ||||||| || ||||
Sbjct: 134985401 cagtattcacctggcccagagtctaaccaatgctaggctttcctgtgagaagagcgtggg 134985342

                                                                             
Query: 1045      gtgcagctagaacagtgtaggttcactcataacccctttctgctgttttccatgatccaa 1104
                 || ||||||||| ||  ||  ||| |||||||||||||| ||||||||  || |||||| 
Sbjct: 134985341 gtacagctagaaaagcataatttccctcataacccctttatgctgtttctcacgatccag 134985282

                                                                             
Query: 1105      ctgtgtaatttctggtcagtga-ttccaggttttaaataatttgtaagtgttcagtttct 1163
                 ||||||||||||||| || ||| |||||||||||||||  ||  |||| |||||||||||
Sbjct: 134985281 ctgtgtaatttctggccaatgatttccaggttttaaatttttcctaagagttcagtttct 134985222

                                                         
Query: 1164      acacaactttatcacccgctaagattttaaaaatcacatt 1203
                 |||  ||||||||| || |||||| ||||||||| |||||
Sbjct: 134985221 acatgactttatcatcccctaagaatttaaaaattacatt 134985182


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  198 bits (100), Expect = 6e-48
 Identities = 151/168 (89%)
 Strand = Plus / Plus

                                                                            
Query: 854      attggctgcataatcgggcgccaaggcgccaacattaatgagatccgccagatgtccggg 913
                |||||||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||
Sbjct: 19128347 attggctgcataatcgggcgtcaaggcgccaaaatcaatgagatccgtcagatgtctggg 19128406

                                                                            
Query: 914      gcccagatcaaaattgccaatccagtggaaggctcttctggtaggcaggttactatcact 973
                || |||||||||||||| || ||||||||||| ||| ||| |||||||||||| ||||||
Sbjct: 19128407 gcgcagatcaaaattgcgaacccagtggaaggatctactgataggcaggttaccatcact 19128466

                                                                
Query: 974      ggttctgctgccagtattagtctggcccaatatctaatcaatgccagg 1021
                || ||||||||||| ||||| ||||| |||||||||||||||| ||||
Sbjct: 19128467 ggatctgctgccagcattagcctggctcaatatctaatcaatgtcagg 19128514



 Score =  101 bits (51), Expect = 1e-18
 Identities = 111/131 (84%)
 Strand = Plus / Plus

                                                                            
Query: 357      agagtacgggggcccaggtccaggtggcgggggatatgctgcccaactctaccgagcggg 416
                ||||||| || || |||||||||||||| ||||| ||||| |||||||| || |||||||
Sbjct: 19119438 agagtacaggagctcaggtccaggtggcaggggacatgctccccaactccactgagcggg 19119497

                                                                            
Query: 417      ccatcaccattgctggcgtgccgcagtctgtcaccgagtgtgtcaagcagatctgcctgg 476
                ||||||| ||||||||| | ||||| ||  |||  |||||||| || ||||||||| |||
Sbjct: 19119498 ccatcactattgctggcatcccgcaatccatcattgagtgtgtgaaacagatctgcgtgg 19119557

                           
Query: 477      tcatgctggag 487
                ||||| |||||
Sbjct: 19119558 tcatgttggag 19119568



 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 101/118 (85%)
 Strand = Plus / Plus

                                                                            
Query: 108      agagtggcgcgcggatcaacatctcggaggggaattgtccggagagaatcatcactctga 167
                ||||||| || || ||||||||||| || ||||||||||| |||||||| |||||| || 
Sbjct: 19113786 agagtggtgcacgtatcaacatctcagaagggaattgtcctgagagaattatcactttgg 19113845

                                                                          
Query: 168      ccggccccaccaatgccatctttaaggccttcgctatgatcatcgacaagctggaaga 225
                | || ||||| ||||||||||| || ||||| ||||||||||| ||||| ||||||||
Sbjct: 19113846 ctggacccactaatgccatcttcaaagcctttgctatgatcattgacaaactggaaga 19113903



 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 102/122 (83%)
 Strand = Plus / Plus

                                                                            
Query: 230      atcaacagctccatgaccaacagcacggcggccagcaggcccccggtcaccctgaggctc 289
                |||| |||||| |||||||| ||||| || ||||| || ||||| |||||||||||||| 
Sbjct: 19118355 atcagcagctctatgaccaatagcacagctgccagtagacccccagtcaccctgaggctg 19118414

                                                                            
Query: 290      gtggtgccggccacccagtgcggctccctgattgggaaaggcggctgtaagatcaaagag 349
                ||||| || || |  ||||| ||||| || ||||||||||| || || ||||||||||||
Sbjct: 19118415 gtggtccctgctagtcagtgtggctctctcattgggaaaggtggttgcaagatcaaagag 19118474

                  
Query: 350      at 351
                ||
Sbjct: 19118475 at 19118476



 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 125/152 (82%), Gaps = 12/152 (7%)
 Strand = Plus / Plus

                                                                            
Query: 1037     ggcatggggtgcagctagaacagtgtaggttcactcataacccctttctgctgttttcca 1096
                ||||||||| |||||||||||| || || ||||  ||||| ||||||||||||||  |||
Sbjct: 19134602 ggcatggggagcagctagaacaatgcagattcatccataatccctttctgctgttcacca 19134661

                                                                            
Query: 1097     -------tgatccaactgtgtaatttctg----gtcagtgattccaggttttaaataatt 1145
                       ||||||| ||||||| ||||||    ||||| |||||||||||||||||| ||
Sbjct: 19134662 ccacccatgatccatctgtgtagtttctgaacagtcagcgattccaggttttaaatagtt 19134721

                                                
Query: 1146     tgtaagtgttcagtttctacacaactttatca 1177
                ||||| | |||||||||||||| |||||||||
Sbjct: 19134722 tgtaaattttcagtttctacac-actttatca 19134752



 Score = 65.9 bits (33), Expect = 5e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                     
Query: 761      attgactccagctctccagaggtgaaaggctattggg 797
                ||||| |||||||||||||||||||||||||||||||
Sbjct: 19125581 attgaatccagctctccagaggtgaaaggctattggg 19125617


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  145 bits (73), Expect = 7e-32
 Identities = 268/333 (80%)
 Strand = Plus / Plus

                                                                             
Query: 101       cgcgaggagagtggcgcgcggatcaacatctcggaggggaattgtccggagagaatcatc 160
                 |||||||||||||| ||  | ||||||||||| || | ||||||||| |||||||| |||
Sbjct: 187064478 cgcgaggagagtggtgcatgtatcaacatctcagaagagaattgtcctgagagaattatc 187064537

                                                                             
Query: 161       actctgaccggccccaccaatgccatctttaaggccttcgctatgatcatcgacaagctg 220
                 ||| || | || ||||| ||||||||||| || | ||| ||| ||||    |||||  ||
Sbjct: 187064538 actttggctggacccactaatgccatcttcaaaggctttgctgtgattcctgacaaattg 187064597

                                                                             
Query: 221       gaagaagatatcaacagctccatgaccaacagcacggcggccagcaggcccccggtcacc 280
                 ||||| || |||| |||||| ||||||||||| || || |||||||| ||||| ||| ||
Sbjct: 187064598 gaagaggacatcagcagctctatgaccaacagaacagctgccagcagacccccagtcgcc 187064657

                                                                             
Query: 281       ctgaggctcgtggtgccggccacccagtgcggctccctgattgggaaaggcggctgtaag 340
                 ||||| || ||||| || || |   |||| ||||| || ||||| ||||| || || |||
Sbjct: 187064658 ctgagactggtggtccctgctagtgagtgtggctctctcattggaaaaggtggttgcaag 187064717

                                                                             
Query: 341       atcaaagagatccgcgagagtacgggggcccaggtccaggtggcgggggatatgctgccc 400
                 |||| |||||| |  |||||||| ||||| |||||||||||||| ||||  ||||| |||
Sbjct: 187064718 atcagagagattcaagagagtacaggggctcaggtccaggtggcagggggcatgcttccc 187064777

                                                  
Query: 401       aactctaccgagcgggccatcaccattgctggc 433
                 | ||| || ||||||||||| || |||||||||
Sbjct: 187064778 atctccactgagcgggccattactattgctggc 187064810



 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 96/116 (82%)
 Strand = Plus / Plus

                                                                             
Query: 830       gaactcaccattccaaataacttaattggctgcataatcgggcgccaaggcgccaacatt 889
                 |||||||||||||||||  | || ||||||||| ||||||  |  ||||||||||| || 
Sbjct: 187065087 gaactcaccattccaaacgatttgattggctgcgtaatcgaacatcaaggcgccaaaatc 187065146

                                                                         
Query: 890       aatgagatccgccagatgtccggggcccagatcaaaattgccaatccagtggaagg 945
                 | ||||||||| || ||||| ||||| | |||||||| ||| || |||||||||||
Sbjct: 187065147 agtgagatccgtcacatgtctggggcgctgatcaaaactgcaaacccagtggaagg 187065202



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 46/50 (92%)
 Strand = Plus / Plus

                                                                   
Query: 368       gcccaggtccaggtggcgggggatatgctgcccaactctaccgagcgggc 417
                 ||||||||||||||||| ||||| |||||||||||||| || ||||||||
Sbjct: 218319300 gcccaggtccaggtggccggggacatgctgcccaactccacggagcgggc 218319349


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  105 bits (53), Expect = 6e-20
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                            
Query: 890      aatgagatccgccagatgtccggggcccagatcaaaattgccaatccagtggaaggctct 949
                ||||||||||| ||||| || ||||| |||||||||||||| ||  ||||||   | |||
Sbjct: 55135021 aatgagatccgtcagatatctggggcacagatcaaaattgcaaacacagtggtgagatct 55134962

                                                                            
Query: 950      tctggtaggcaggttactatcactggttctgctgccagtattagtctggcccaatatcta 1009
                 ||| |||||||||||| |||| ||| ||||||||||| ||||| ||||| || ||||||
Sbjct: 55134961 actgataggcaggttaccatcaatggatctgctgccagcattagcctggctcagtatcta 55134902

                                         
Query: 1010     atcaatgccaggctttcctctgaga 1034
                |||| || |||||||||||| ||||
Sbjct: 55134901 atcagtgtcaggctttcctcagaga 55134877


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,809,887
Number of extensions: 431
Number of successful extensions: 431
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 422
Number of HSP's successfully gapped: 17
Length of query: 1365
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1344
Effective length of database: 2,808,413,156
Effective search space: 3774507281664
Effective search space used: 3774507281664
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)