Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073824.1| probable ribosome biogenesis protein RLP24 [... 300 3e-81
Alignment gi|NP_776880.1| 60S ribosomal protein L24 [Bos taurus]. 64 4e-10
>ref|NP_001073824.1| probable ribosome biogenesis protein RLP24 [Bos taurus].
Length = 163
Score = 300 bits (767), Expect = 3e-81
Identities = 147/163 (90%), Positives = 150/163 (92%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 416
KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 417 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS 545
VQD+KEVKQNIHLIRAPLAGKGKQLEDKMVQ+LQ+DVDMEDVS
Sbjct: 121 VQDVKEVKQNIHLIRAPLAGKGKQLEDKMVQKLQEDVDMEDVS 163
>ref|NP_776880.1| 60S ribosomal protein L24 [Bos taurus].
Length = 157
Score = 63.5 bits (153), Expect = 4e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,275,377
Number of extensions: 928032
Number of successful extensions: 2369
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2366
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535488.2| PREDICTED: similar to ribosomal protein L24-lik... 298 9e-81
Alignment gi|XP_535724.1| PREDICTED: similar to ribosomal protein L24 iso... 64 5e-10
Alignment gi|XP_856936.1| PREDICTED: similar to ribosomal protein L24 iso... 59 2e-08
>ref|XP_535488.2| PREDICTED: similar to ribosomal protein L24-like [Canis
familiaris].
Length = 163
Score = 298 bits (763), Expect = 9e-81
Identities = 146/163 (89%), Positives = 150/163 (92%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 416
KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 417 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS 545
VQDIKEVKQNIHLIRAPLAGKGKQLE+KMVQ+LQ+DVDMED+S
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQKLQEDVDMEDIS 163
>ref|XP_535724.1| PREDICTED: similar to ribosomal protein L24 isoform 2 [Canis
familiaris].
Length = 157
Score = 63.5 bits (153), Expect = 5e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
>ref|XP_856936.1| PREDICTED: similar to ribosomal protein L24 isoform 5 [Canis
familiaris].
Length = 121
Score = 58.5 bits (140), Expect = 2e-08
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTI-DAMKRVEEIKQKRQAK 374
K S E +K+R VK+QR + ++ D M + + + R+A+
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQ 104
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,159,243
Number of extensions: 952630
Number of successful extensions: 2370
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2368
Number of HSP's successfully gapped: 3
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057388.1| probable ribosome biogenesis protein RLP24 [Hom... 296 3e-80
Alignment gi|NP_000977.1| 60S ribosomal protein L24 [Homo sapiens]. 64 5e-10
>ref|NP_057388.1| probable ribosome biogenesis protein RLP24 [Homo sapiens].
Length = 163
Score = 296 bits (759), Expect = 3e-80
Identities = 145/161 (90%), Positives = 148/161 (91%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 416
KELTVDNSFEFEKRRNEP+KYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
Sbjct: 61 KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 417 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMED 539
VQDIKEVKQNIHLIRAPLAGKGKQLE+KMVQQLQ+DVDMED
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMED 161
>ref|NP_000977.1| 60S ribosomal protein L24 [Homo sapiens].
Length = 157
Score = 63.5 bits (153), Expect = 5e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,508,641
Number of extensions: 945412
Number of successful extensions: 2276
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2274
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_941011.1| probable ribosome biogenesis protein RLP24 [Mus... 297 2e-80
Alignment gi|NP_077180.1| 60S ribosomal protein L24 [Mus musculus]. 64 4e-10
>ref|NP_941011.1| probable ribosome biogenesis protein RLP24 [Mus musculus].
Length = 163
Score = 297 bits (760), Expect = 2e-80
Identities = 146/163 (89%), Positives = 149/163 (91%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 416
KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 417 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS 545
VQDIKEVKQNIHLIRAPLAGKGKQLE+KMVQQLQ+DVDME+ S
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGKGKQLEEKMVQQLQEDVDMEEAS 163
>ref|NP_077180.1| 60S ribosomal protein L24 [Mus musculus].
Length = 157
Score = 63.5 bits (153), Expect = 4e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,382,863
Number of extensions: 822235
Number of successful extensions: 2080
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2078
Number of HSP's successfully gapped: 2
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353401.1| PREDICTED: probable ribosome biogenesis prot... 303 2e-82
Alignment gi|XP_003121546.2| PREDICTED: probable ribosome biogenesis prot... 166 4e-41
Alignment gi|XP_003132745.1| PREDICTED: 60S ribosomal protein L24-like is... 64 3e-10
Alignment gi|XP_003358878.1| PREDICTED: 60S ribosomal protein L24-like [S... 64 3e-10
Alignment gi|XP_003358880.1| PREDICTED: 60S ribosomal protein L24-like is... 61 2e-09
>ref|XP_003353401.1| PREDICTED: probable ribosome biogenesis protein RLP24-like [Sus
scrofa].
Length = 163
Score = 303 bits (775), Expect = 2e-82
Identities = 150/163 (92%), Positives = 150/163 (92%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 416
KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQK 120
Query: 417 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS 545
VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS
Sbjct: 121 VQDIKEVKQNIHLIRAPLAGKGKQLEDKMVQQLQQDVDMEDVS 163
>ref|XP_003121546.2| PREDICTED: probable ribosome biogenesis protein RLP24-like [Sus
scrofa].
Length = 139
Score = 166 bits (419), Expect = 4e-41
Identities = 81/110 (73%), Positives = 85/110 (77%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
MRIEKCYFCSGPIYPGHGMMFVRNDCKVFR RNPRKVRWTKAFRKAAG
Sbjct: 1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60
Query: 237 KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMN 386
KELTVDNSFEFEKRRNEPVKYQRELWNKTI + + K +AK M+
Sbjct: 61 KELTVDNSFEFEKRRNEPVKYQRELWNKTISPPLQNWKYTIKNKAKMRMS 110
>ref|XP_003132745.1| PREDICTED: 60S ribosomal protein L24-like isoform 1 [Sus scrofa].
Length = 157
Score = 63.5 bits (153), Expect = 3e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
>ref|XP_003358878.1| PREDICTED: 60S ribosomal protein L24-like [Sus scrofa].
Length = 157
Score = 63.5 bits (153), Expect = 3e-10
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Frame = +3
Query: 57 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAG 236
M++E C F IYPGHG + R D KVF+ RNPR++ WT +R+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 237 KELTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQ 413
K S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 K----GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIR 110
Query: 414 KVQDIKEVKQ 443
++ K+ KQ
Sbjct: 111 AAKEAKKAKQ 120
>ref|XP_003358880.1| PREDICTED: 60S ribosomal protein L24-like isoform 2 [Sus scrofa].
Length = 156
Score = 60.8 bits (146), Expect = 2e-09
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +3
Query: 63 IEKCYFCSGPIYPGHGMMFVRNDCKVFRXXXXXXXXXXXXXRNPRKVRWTKAFRKAAGKE 242
+E C F IYPGHG + R D KVF+ RNPR++ WT +R+ K
Sbjct: 2 VELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKK- 60
Query: 243 LTVDNSFEFEKRR-NEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKV 419
S E +K+R VK+QR + ++ +I KR K + + ++ + ++
Sbjct: 61 ---GQSEEIQKKRTRRAVKFQRAITGASL------ADIMAKRNQKPEVRKAQREQAIRAA 111
Query: 420 QDIKEVKQ 443
++ K+ KQ
Sbjct: 112 KEAKKAKQ 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,681,190
Number of extensions: 588769
Number of successful extensions: 1402
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 5
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002742
(1469 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1899 0.0
Sscrofa_Chr07 728 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1899 bits (958), Expect = 0.0
Identities = 987/998 (98%), Gaps = 1/998 (0%)
Strand = Plus / Plus
Query: 473 agggaaaggaaagcagctggaagacaaaatggtacagcaattacaacaggatgtggacat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165160 agggaaaggaaagcagctggaagacaaaatggtacagcaattacaacaggatgtggacat 129165219
Query: 533 ggaagatgtttcttaaaacccttaccgtctgtaaccatttctttaagtgcatttgaaaag 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165220 ggaagatgtttcttaaaacccttaccgtctgtaaccatttctttaagtgcatttgaaaag 129165279
Query: 593 ctcctttggaaacttagaacttctaaattattgatttattttttacagtcaaatgaaagg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165280 ctcctttggaaacttagaacttctaaattattgatttattttttacagtcaaatgaaagg 129165339
Query: 653 ggattaaagtacttctcttctacattgctatctgcagaacaccagatattatggatgcta 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165340 ggattaaagtacttctcttctacattgctatctgcagaacaccagatattatggatgcta 129165399
Query: 713 gattgcatctcagcattaaaccttccctgagagagacatcttttataaatcatcaaagtt 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165400 gattgcatctcagcattaaaccttccctgagagagacatcttttataaatcatcaaagtt 129165459
Query: 773 ctgtttgtaaataccaaagtgaattgtggatataaaatggtcatgtcattggttaatgac 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165460 ctgtttgtaaataccaaagtgaattgtggatataaaatggtcatgtcattggttaatgac 129165519
Query: 833 taggcagcatttatgtaataactaaagacattcatggctagtgatatataaaaattttct 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165520 taggcagcatttatgtaataactaaagacattcatggctagtgatatataaaaattttct 129165579
Query: 893 ttgcagtaaaatattctctttattgatgttctagaagagatacagcaaggaactaacaat 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165580 ttgcagtaaaatattctctttattgatgttctagaagagatacagcaaggaactaacaat 129165639
Query: 953 ctgtatgatacttagcctcaagtattttcttttgatttcactttttccagttttggttta 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165640 ctgtatgatacttagcctcaagtattttcttttgatttcactttttccagttttggttta 129165699
Query: 1013 ttagattcttagaagaacataatgatctaatattttgaagcctaattatgttggactgtt 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165700 ttagattcttagaagaacataatgatctaatattttgaagcctaattatgttggactgtt 129165759
Query: 1073 ttgacctggtttaactgttatgataggcatttgttaagggtgagaactgaataatctgtt 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165760 ttgacctggtttaactgttatgataggcatttgttaagggtgagaactgaataatctgtt 129165819
Query: 1133 ctcaaaatatcactataatttccactttggaggatgctcaattctaacttgagatttctg 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129165820 ctcaaaatatcactataatttccactttggaggatgctcaattctaacttgagatttctg 129165879
Query: 1193 gcagaataaaccttattttttcagctttgcagtaattgagaagcagaagaatcttttacc 1252
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 129165880 gcagaataaaccttattttttcagctttgcagtaattgagaagcagaggaatcttttacc 129165939
Query: 1253 tactaaaatttcttgtgtggttttcttttnnnnnnnttcttaattgtttttgggaaattg 1312
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 129165940 tactaaaatttcttgtgtggttttcttttaaaaaaattcttaattgtttttgggaaattg 129165999
Query: 1313 gacatttgggtagcttagtaattttttgtttgcacatnaaatcatttttaatgtgcatgc 1372
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129166000 gacatttgggtagcttagtaattttttgtttgcacataaaatcatttttaatgtgcatgc 129166059
Query: 1373 ctatgtatttaaaaatacaaaacaaaaggtatgaagtattgattacttggaagaaaa-ta 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 129166060 ctatgtatttaaaaatacaaaacaaaaggtatgaagtattgattacttggaagaaaatta 129166119
Query: 1432 ctttgctcacatactcttgaagtaggagatatttttta 1469
||||||||||||||||||||||||||||||| ||||||
Sbjct: 129166120 ctttgctcacatactcttgaagtaggagataattttta 129166157
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 2 acgtcacttccttcaacctcggcgtttgccgggcgggttcccacgcgcgttcagcatgag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129150019 acgtcacttccttcaacctcggcgtttgccgggcgggttcccacgcgcgttcagcatgag 129150078
Query: 62 gattgagaagtgttatttctgttcggggcctatctacccaggccatggcatgatgttcgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129150079 gattgagaagtgttatttctgttcggggcctatctacccaggccatggcatgatgttcgt 129150138
Query: 122 ccgtaacgattgcaaggtg 140
|||||||||||||||||||
Sbjct: 129150139 ccgtaacgattgcaaggtg 129150157
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 136 aggtgttcagattctgtaaatccaaatgtcataaaaacttcaagaagaagcgcaatcctc 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129156157 aggtgttcagattctgtaaatccaaatgtcataaaaacttcaagaagaagcgcaatcctc 129156216
Query: 196 gcaaggtcagatggactaaagcgttcaggaaagcagctggtaaagagctcacggtgg 252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129156217 gcaaggtcagatggactaaagcgttcaggaaagcagctggtaaagagctcacggtgg 129156273
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 387 aggttgaagaaaaataaagaacttcagaaagttcaggatattaaagaagtcaagcaaaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129163851 aggttgaagaaaaataaagaacttcagaaagttcaggatattaaagaagtcaagcaaaac 129163910
Query: 447 atccatcttatccgggcccctcttgcagg 475
|||||||||||||||||||||||||||||
Sbjct: 129163911 atccatcttatccgggcccctcttgcagg 129163939
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 251 ggataattcatttgaatttgaaaaacgtagaaatgaacctgtcaaataccagcgagagct 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129158282 ggataattcatttgaatttgaaaaacgtagaaatgaacctgtcaaataccagcgagagct 129158341
Query: 311 atggaataaaacta 324
||||||||||||||
Sbjct: 129158342 atggaataaaacta 129158355
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 325 ttgatgcaatgaagagagttgaagagatcaaacagaaacgtcaagctaaatttataatga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129161477 ttgatgcaatgaagagagttgaagagatcaaacagaaacgtcaagctaaatttataatga 129161536
Query: 385 acaggt 390
||||||
Sbjct: 129161537 acaggt 129161542
>Sscrofa_Chr07
|| Length = 134764511
Score = 728 bits (367), Expect = 0.0
Identities = 736/851 (86%), Gaps = 26/851 (3%)
Strand = Plus / Plus
Query: 51 ttcagcatgaggattgagaagtgttatttctgttcggggcctatctacccaggccatggc 110
|||| |||||||||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 105482097 ttcatcatgaggattgaaaagtgtt-tttctgtttagggcctatctacccaggccatggc 105482155
Query: 111 atgatgttcgtccgtaacgattgcaaggtgttcagattctgtaaatccaaatgtcataaa 170
||||||||| ||| ||| |||||||| | ||||||||||| ||||||||||| ||||||
Sbjct: 105482156 atgatgttcatccataatgattgcaaagcattcagattctgcaaatccaaatgccataaa 105482215
Query: 171 aacttcaagaagaagcgcaatcctcgcaaggtcagatggactaaagcgtt-caggaaagc 229
||| ||||||||||| |||| ||| ||||||| ||||||||||||| ||| ||| ||| |
Sbjct: 105482216 aacctcaagaagaagtgcaacccttgcaaggtaagatggactaaagtgtttcagcaaa-c 105482274
Query: 230 agctggtaaagagctcacggtggataattcatttgaatttgaaaaacgtagaaatgaacc 289
||||||||| |||||||| |||| |||||||| ||||||||||| |||||||||||||
Sbjct: 105482275 agctggtaatgagctcacagtgggtaattcatctgaatttgaaagt-gtagaaatgaacc 105482333
Query: 290 tgtcaaataccagcgagagctatggaataaaactattgatgcaatgaagagagttgaaga 349
||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 105482334 tgtcaaataccagtgagaactatggaataaaactattgatgaaatgaagagagttgaaga 105482393
Query: 350 gatcaaacagaaacgtcaagctaaatttataatgaacaggttgaagaaaaataaagaact 409
||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 105482394 aatcaaacagaaacaccaagctaaatttataatgaacaggttgaagaaaaatga------ 105482447
Query: 410 tcagaaagttcaggatattaaagaagtcaagcaaaacatccatcttatccgggcccctct 469
| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 105482448 -ctgaaagttcagaatattaaagaagtctagcaaaacatccatcttatctgggcccctct 105482506
Query: 470 tgcagggaaaggaaagcagctggaagac-aaaatggtacagcaattacaacaggatgtgg 528
|||||| |||| ||||||||||| |||| |||| ||||||||| || | ||||||| |
Sbjct: 105482507 tgcaggcaaagcaaagcagctgggagacaaaaaatgtacagcaactatagcaggatgcag 105482566
Query: 529 ac---atggaagatgtttcttaaaaccctt--accgtctgtaaccatttctttaagtgca 583
|| | || || ||||||||| | ||| || ||| |||||||||||| ||| ||||
Sbjct: 105482567 acacaaaaaaatatttttcttaaagctcttaaactgtcggtaaccatttctataattgca 105482626
Query: 584 tttgaaaagctcctttggaaacttagaacttctaaattattgatttatttttta------ 637
|||||||| |||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 105482627 tttgaaaatctcctttggagatttagaacttctaaattattgatttatcttttacataag 105482686
Query: 638 --cagtcaaatgaaaggggattaaagtacttctcttctacattgctatctgcagaacacc 695
|| ||||||| ||||||||||||||| |||||| |||||||||| |||| ||||||||
Sbjct: 105482687 gtcactcaaatggaaggggattaaagtaattctctcctacattgctgtctgaagaacacc 105482746
Query: 696 agatattatggatgctagattgcatctcagcattaaaccttccctgagagagacatcttt 755
||||||||||||| |||||||| |||||||||||||||||||||||||||| | | |||
Sbjct: 105482747 agatattatggatactagattgtatctcagcattaaaccttccctgagagatata-cttc 105482805
Query: 756 tataaatcatcaaagttctgtttgtaaataccaaagtgaattgtggatataaaatggtca 815
|||||||||| ||| ||||||||||||||| |||||||| ||| ||| ||||| ||
Sbjct: 105482806 tataaatcatgaaaattctgtttgtaaatatgaaagtgaaccatggggatacaatggcca 105482865
Query: 816 tgtcattggttaatgactaggcagcatttatgtaataactaaagacattcatggctagtg 875
|| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 105482866 tgcatttggttaatgactaggcagcatttatttaataactaatgacattcatggctagtg 105482925
Query: 876 atatataaaaa 886
||||||||||
Sbjct: 105482926 gtatataaaaa 105482936
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 62,123,250
Number of extensions: 649
Number of successful extensions: 649
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 10
Length of query: 1469
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1448
Effective length of database: 2,808,413,156
Effective search space: 4066582249888
Effective search space used: 4066582249888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)