Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070562.1| cytohesin-2 [Bos taurus]. 534 e-152
Alignment gi|XP_002696202.1| PREDICTED: cytohesin 1 [Bos taurus]. 446 e-125
Alignment gi|XP_001789922.1| PREDICTED: cytohesin 1 [Bos taurus]. 446 e-125
Alignment gi|XP_002687738.1| PREDICTED: cytohesin 4 [Bos taurus]. 380 e-105
Alignment gi|XP_001788810.1| PREDICTED: cytohesin 4 isoform 1 [Bos taurus]. 380 e-105
Alignment gi|XP_002698196.1| PREDICTED: Cyth3 protein-like [Bos taurus]. 363 e-100
Alignment gi|XP_875914.4| PREDICTED: Cyth3 protein-like [Bos taurus]. 363 e-100
Alignment gi|NP_776422.1| brefeldin A-inhibited guanine nucleotide-exchan... 186 3e-47
Alignment gi|NP_001192581.1| brefeldin A-inhibited guanine nucleotide-exc... 181 1e-45
Alignment gi|XP_002692541.1| PREDICTED: cytohesin 1-like [Bos taurus]. 181 1e-45
>ref|NP_001070562.1| cytohesin-2 [Bos taurus].
Length = 410
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|XP_002696202.1| PREDICTED: cytohesin 1 [Bos taurus].
Length = 411
Score = 446 bits (1147), Expect = e-125
Identities = 211/259 (81%), Positives = 239/259 (92%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNHGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPE 937
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NEP +IPE
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE 250
Query: 938 DDGNDLTHTFFTPDREGWL 994
DDGNDLTHTFF PDREGWL
Sbjct: 251 DDGNDLTHTFFNPDREGWL 269
>ref|XP_001789922.1| PREDICTED: cytohesin 1 [Bos taurus].
Length = 410
Score = 446 bits (1147), Expect = e-125
Identities = 211/259 (81%), Positives = 239/259 (92%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNHGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPE 937
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NEP +IPE
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE 250
Query: 938 DDGNDLTHTFFTPDREGWL 994
DDGNDLTHTFF PDREGWL
Sbjct: 251 DDGNDLTHTFFNPDREGWL 269
>ref|XP_002687738.1| PREDICTED: cytohesin 4 [Bos taurus].
Length = 394
Score = 380 bits (976), Expect = e-105
Identities = 178/260 (68%), Positives = 219/260 (84%)
Frame = +2
Query: 215 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 394
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E E S+ QR +++
Sbjct: 7 DPGELSSGEAEELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFETAEESRMAQREKELC 66
Query: 395 MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 574
+GRKKFNMDP KGIQ+L+E++LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPMKGIQYLIEHKLLTPDAQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 575 HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY 754
AFVD HEF +LNLVQALRQFLWSFRLPGEAQKIDRMME FA RYCLCNPGVFQSTDTCY
Sbjct: 127 QAFVDCHEFANLNLVQALRQFLWSFRLPGEAQKIDRMMETFASRYCLCNPGVFQSTDTCY 186
Query: 755 VLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIP 934
VLSF++IMLNTSLHNPNVRD+P ERFV+MNRGIN G DLPEE LRNL+DSI++EP IP
Sbjct: 187 VLSFSIIMLNTSLHNPNVRDRPPFERFVSMNRGINGGSDLPEEQLRNLFDSIKSEPFSIP 246
Query: 935 EDDGNDLTHTFFTPDREGWL 994
EDDGNDLTHTFF PDREGWL
Sbjct: 247 EDDGNDLTHTFFKPDREGWL 266
>ref|XP_001788810.1| PREDICTED: cytohesin 4 isoform 1 [Bos taurus].
Length = 394
Score = 380 bits (976), Expect = e-105
Identities = 178/260 (68%), Positives = 219/260 (84%)
Frame = +2
Query: 215 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 394
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E E S+ QR +++
Sbjct: 7 DPGELSSGEAEELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFETAEESRMAQREKELC 66
Query: 395 MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 574
+GRKKFNMDP KGIQ+L+E++LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPMKGIQYLIEHKLLTPDAQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 575 HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY 754
AFVD HEF +LNLVQALRQFLWSFRLPGEAQKIDRMME FA RYCLCNPGVFQSTDTCY
Sbjct: 127 QAFVDCHEFANLNLVQALRQFLWSFRLPGEAQKIDRMMETFASRYCLCNPGVFQSTDTCY 186
Query: 755 VLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIP 934
VLSF++IMLNTSLHNPNVRD+P ERFV+MNRGIN G DLPEE LRNL+DSI++EP IP
Sbjct: 187 VLSFSIIMLNTSLHNPNVRDRPPFERFVSMNRGINGGSDLPEEQLRNLFDSIKSEPFSIP 246
Query: 935 EDDGNDLTHTFFTPDREGWL 994
EDDGNDLTHTFF PDREGWL
Sbjct: 247 EDDGNDLTHTFFKPDREGWL 266
>ref|XP_002698196.1| PREDICTED: Cyth3 protein-like [Bos taurus].
Length = 651
Score = 363 bits (932), Expect = e-100
Identities = 175/225 (77%), Positives = 203/225 (90%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AM
Sbjct: 130 PEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQVAM 189
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDP+KGIQFL+EN+LLQ++PE++A+FLYKGEGLNKT IGDYLGER+E N+ VL
Sbjct: 190 GRKKFNMDPRKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQ 249
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVFQSTDTCYV
Sbjct: 250 AFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAARYCLCNPGVFQSTDTCYV 309
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLR 892
LSFA+IMLNTSLHN NVRDKP ERFV MNRGINEGGDLPEELLR
Sbjct: 310 LSFAIIMLNTSLHNHNVRDKPTAERFVTMNRGINEGGDLPEELLR 354
>ref|XP_875914.4| PREDICTED: Cyth3 protein-like [Bos taurus].
Length = 651
Score = 363 bits (932), Expect = e-100
Identities = 175/225 (77%), Positives = 203/225 (90%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AM
Sbjct: 130 PEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQVAM 189
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDP+KGIQFL+EN+LLQ++PE++A+FLYKGEGLNKT IGDYLGER+E N+ VL
Sbjct: 190 GRKKFNMDPRKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQ 249
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVFQSTDTCYV
Sbjct: 250 AFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAARYCLCNPGVFQSTDTCYV 309
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLR 892
LSFA+IMLNTSLHN NVRDKP ERFV MNRGINEGGDLPEELLR
Sbjct: 310 LSFAIIMLNTSLHNHNVRDKPTAERFVTMNRGINEGGDLPEELLR 354
>ref|NP_776422.1| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Bos
taurus].
Length = 1849
Score = 186 bits (472), Expect = 3e-47
Identities = 92/206 (44%), Positives = 140/206 (67%), Gaps = 3/206 (1%)
Frame = +2
Query: 329 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKG 505
+++ G + E + L++ +++ G F PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFTKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 506 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRM 685
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR FL FRLPGEAQKIDR+
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRL 800
Query: 686 MEAFAQRYCLCNPG--VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGIN 859
ME FA RY CN G +F S DT YVL++++IML T LH+P V++K E+++ MNRGIN
Sbjct: 801 MEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGIN 860
Query: 860 EGGDLPEELLRNLYDSIRNEPVQIPE 937
+ DLPEE L +Y+ I + + + E
Sbjct: 861 DSKDLPEEYLSAIYNEIAGKKISMKE 886
>ref|NP_001192581.1| brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Bos
taurus].
Length = 1779
Score = 181 bits (458), Expect = 1e-45
Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 2/190 (1%)
Frame = +2
Query: 374 QRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 553
Q+ + G + FN PK+GIQ+L E +L + E+IA+FL++ E L+ T +GD+LGE
Sbjct: 636 QQKEMIEHGIELFNKKPKRGIQYLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGESM 695
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG-- 727
+ N V++A+VD +F + V ALR FL FRLPGEAQKIDR+ME FA RY CN G
Sbjct: 696 KFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQT 755
Query: 728 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 907
+F S DT YVL++++IML T LH+P V++K E+++ MNRGIN+ DLPEE L ++Y+
Sbjct: 756 LFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEE 815
Query: 908 IRNEPVQIPE 937
I + + + E
Sbjct: 816 IEGKKIAMKE 825
>ref|XP_002692541.1| PREDICTED: cytohesin 1-like [Bos taurus].
Length = 1779
Score = 181 bits (458), Expect = 1e-45
Identities = 90/190 (47%), Positives = 129/190 (67%), Gaps = 2/190 (1%)
Frame = +2
Query: 374 QRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 553
Q+ + G + FN PK+GIQ+L E +L + E+IA+FL++ E L+ T +GD+LGE
Sbjct: 636 QQKEMIEHGIELFNKKPKRGIQYLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGESM 695
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG-- 727
+ N V++A+VD +F + V ALR FL FRLPGEAQKIDR+ME FA RY CN G
Sbjct: 696 KFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQT 755
Query: 728 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 907
+F S DT YVL++++IML T LH+P V++K E+++ MNRGIN+ DLPEE L ++Y+
Sbjct: 756 LFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEE 815
Query: 908 IRNEPVQIPE 937
I + + + E
Sbjct: 816 IEGKKIAMKE 825
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,213,301
Number of extensions: 1211087
Number of successful extensions: 7691
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 7558
Number of HSP's successfully gapped: 20
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852119.1| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 534 e-152
Alignment gi|XP_533630.2| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 534 e-152
Alignment gi|XP_864950.1| PREDICTED: similar to pleckstrin homology, Sec7... 534 e-152
Alignment gi|XP_864987.1| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 518 e-147
Alignment gi|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 446 e-125
Alignment gi|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 446 e-125
Alignment gi|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 446 e-125
Alignment gi|XP_851399.1| PREDICTED: similar to Cytohesin 3 (ARF nucleoti... 437 e-123
Alignment gi|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 434 e-122
Alignment gi|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 433 e-121
>ref|XP_852119.1| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 2
[Canis familiaris].
Length = 400
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|XP_533630.2| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 1
[Canis familiaris].
Length = 436
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|XP_864950.1| PREDICTED: similar to pleckstrin homology, Sec7 and coiled/coil
domains 2 isoform 2 isoform 3 [Canis familiaris].
Length = 399
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|XP_864987.1| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 5
[Canis familiaris].
Length = 406
Score = 518 bits (1335), Expect = e-147
Identities = 261/284 (91%), Positives = 263/284 (92%), Gaps = 18/284 (6%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGER-- 550
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGER
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERCL 120
Query: 551 ----------------EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDR 682
+LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDR
Sbjct: 121 GALWTSGAYGDCFRSIWDLNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDR 180
Query: 683 MMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINE 862
MMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINE
Sbjct: 181 MMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINE 240
Query: 863 GGDLPEELLRNLYDSIRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
GGDLPEELLRNLYDSIRNEP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 GGDLPEELLRNLYDSIRNEPFKIPEDDGNDLTHTFFNPDREGWL 284
>ref|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 5
[Canis familiaris].
Length = 399
Score = 446 bits (1147), Expect = e-125
Identities = 211/259 (81%), Positives = 239/259 (92%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPE 937
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NEP +IPE
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE 250
Query: 938 DDGNDLTHTFFTPDREGWL 994
DDGNDLTHTFF PDREGWL
Sbjct: 251 DDGNDLTHTFFNPDREGWL 269
>ref|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 1
[Canis familiaris].
Length = 400
Score = 446 bits (1147), Expect = e-125
Identities = 211/259 (81%), Positives = 239/259 (92%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPE 937
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NEP +IPE
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE 250
Query: 938 DDGNDLTHTFFTPDREGWL 994
DDGNDLTHTFF PDREGWL
Sbjct: 251 DDGNDLTHTFFNPDREGWL 269
>ref|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 4
[Canis familiaris].
Length = 404
Score = 446 bits (1147), Expect = e-125
Identities = 211/259 (81%), Positives = 239/259 (92%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPE 937
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NEP +IPE
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNEPFKIPE 250
Query: 938 DDGNDLTHTFFTPDREGWL 994
DDGNDLTHTFF PDREGWL
Sbjct: 251 DDGNDLTHTFFNPDREGWL 269
>ref|XP_851399.1| PREDICTED: similar to Cytohesin 3 (ARF nucleotide-binding site opener
3) (ARNO3 protein) (General receptor of phosphoinositides
1) (Grp1) (CLM-3) [Canis familiaris].
Length = 576
Score = 437 bits (1125), Expect = e-123
Identities = 222/316 (70%), Positives = 253/316 (80%), Gaps = 6/316 (1%)
Frame = +2
Query: 65 RTGAEEAAVAPGAFER------AHPSPRANADPGPTGGTAPDSPRAFLAAMEDGVYEPPD 226
RTGA A+A GA A PS R G G D GV P D
Sbjct: 135 RTGARPGALAVGADRPLARSALAAPSARGPGLAGSGSGLYMDEDGGGGGGEGGGV--PED 192
Query: 227 LTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRK 406
L+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AMGRK
Sbjct: 193 LSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQIAMGRK 252
Query: 407 KFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFV 586
KFNMDPKKGIQFL+EN+LLQN+PE++A+FLYKGEGLNKT IGDYLGER++ N+ VL AFV
Sbjct: 253 KFNMDPKKGIQFLIENDLLQNSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFV 312
Query: 587 DLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSF 766
+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVFQSTDTCYVLSF
Sbjct: 313 ELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSF 372
Query: 767 AVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPEDDG 946
A+IMLNTSLHN NVRDKP ERFV MNRGINEGGDLPEELLRNLY+SI+NEP +IPEDDG
Sbjct: 373 AIIMLNTSLHNHNVRDKPTAERFVTMNRGINEGGDLPEELLRNLYESIKNEPFKIPEDDG 432
Query: 947 NDLTHTFFTPDREGWL 994
NDLTHTFF PDREGWL
Sbjct: 433 NDLTHTFFNPDREGWL 448
>ref|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 3
[Canis familiaris].
Length = 395
Score = 434 bits (1116), Expect = e-122
Identities = 211/279 (75%), Positives = 239/279 (85%), Gaps = 20/279 (7%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 577
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 578 AFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYV 757
AFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQSTDTCYV
Sbjct: 131 AFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQSTDTCYV 190
Query: 758 LSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLR--------------- 892
LSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLR
Sbjct: 191 LSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLREGKVVYKSETKDMQC 250
Query: 893 -----NLYDSIRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
NLY+SI+NEP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 251 RLLSQNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWL 289
>ref|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 2
[Canis familiaris].
Length = 413
Score = 433 bits (1114), Expect = e-121
Identities = 211/281 (75%), Positives = 239/281 (85%), Gaps = 22/281 (7%)
Frame = +2
Query: 218 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 397
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 398 GRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGER--------- 550
GRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERSLESQARFL 130
Query: 551 -------------EELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMME 691
+E N+ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMME
Sbjct: 131 TSTPTPIFVFLARDEFNIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMME 190
Query: 692 AFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGD 871
AFAQRYC CN GVFQSTDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGD
Sbjct: 191 AFAQRYCQCNNGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGD 250
Query: 872 LPEELLRNLYDSIRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
LPEELLRNLY+SI+NEP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 251 LPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWL 291
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,071,837
Number of extensions: 1266850
Number of successful extensions: 8344
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 8187
Number of HSP's successfully gapped: 31
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059431.1| cytohesin-2 isoform 1 [Homo sapiens]. 534 e-152
Alignment gi|NP_004219.3| cytohesin-2 isoform 2 [Homo sapiens]. 534 e-152
Alignment gi|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens]. 451 e-127
Alignment gi|NP_004753.1| cytohesin-1 isoform 1 [Homo sapiens]. 451 e-127
Alignment gi|NP_004218.1| cytohesin-3 [Homo sapiens]. 432 e-121
Alignment gi|NP_037517.1| cytohesin-4 [Homo sapiens]. 382 e-106
Alignment gi|NP_006412.2| brefeldin A-inhibited guanine nucleotide-exchan... 188 6e-48
Alignment gi|NP_006411.2| brefeldin A-inhibited guanine nucleotide-exchan... 180 2e-45
Alignment gi|NP_001127854.1| IQ motif and SEC7 domain-containing protein ... 166 2e-41
Alignment gi|NP_055684.3| IQ motif and SEC7 domain-containing protein 1 i... 166 2e-41
>ref|NP_059431.1| cytohesin-2 isoform 1 [Homo sapiens].
Length = 400
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|NP_004219.3| cytohesin-2 isoform 2 [Homo sapiens].
Length = 399
Score = 534 bits (1375), Expect = e-152
Identities = 263/266 (98%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens].
Length = 397
Score = 451 bits (1160), Expect = e-127
Identities = 214/265 (80%), Positives = 242/265 (91%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
ED Y P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
N+++AMGRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
N+ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 123 NIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQS 182
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 183 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 242
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 PFKIPEDDGNDLTHTFFNPDREGWL 267
>ref|NP_004753.1| cytohesin-1 isoform 1 [Homo sapiens].
Length = 398
Score = 451 bits (1160), Expect = e-127
Identities = 214/265 (80%), Positives = 242/265 (91%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
ED Y P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
N+++AMGRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
N+ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 123 NIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQS 182
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 183 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 242
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 PFKIPEDDGNDLTHTFFNPDREGWL 267
>ref|NP_004218.1| cytohesin-3 [Homo sapiens].
Length = 399
Score = 432 bits (1111), Expect = e-121
Identities = 209/269 (77%), Positives = 240/269 (89%), Gaps = 4/269 (1%)
Frame = +2
Query: 200 EDGVYE----PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSK 367
EDG E P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SK
Sbjct: 3 EDGGGEGGGVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESK 62
Query: 368 TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGE 547
T QRN+++AMGRKKFNMDPKKGIQFL+EN+LLQ++PE++A+FLYKGEGLNKT IGDYLGE
Sbjct: 63 TTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGE 122
Query: 548 REELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG 727
R+E N+ VL AFV+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPG
Sbjct: 123 RDEFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPG 182
Query: 728 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 907
VFQSTDTCYVLSFA+IMLNTSLHN NVRDKP ERF+AMNRGINEGGDLPEELLRNLY+S
Sbjct: 183 VFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFIAMNRGINEGGDLPEELLRNLYES 242
Query: 908 IRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
I+NEP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 IKNEPFKIPEDDGNDLTHTFFNPDREGWL 271
>ref|NP_037517.1| cytohesin-4 [Homo sapiens].
Length = 394
Score = 382 bits (980), Expect = e-106
Identities = 178/260 (68%), Positives = 220/260 (84%)
Frame = +2
Query: 215 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 394
EP +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E+ E S+ Q+ +++
Sbjct: 7 EPAELSSGETEELQRIKWHRKQLLEDIQKLKDEIADVFAQIDCFESAEESRMAQKEKELC 66
Query: 395 MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 574
+GRKKFNMDP KGIQ+ +E++LL ++IARFLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPAKGIQYFIEHKLLTPDVQDIARFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 575 HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY 754
AFVD HEF +LNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVFQSTDTCY
Sbjct: 127 QAFVDCHEFANLNLVQALRQFLWSFRLPGEAQKIDRMMEAFATRYCLCNPGVFQSTDTCY 186
Query: 755 VLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIP 934
VLSF++IMLNTSLHNPNVRD+P ERFV+MNRGIN G DLPE+ LRNL+DSI++EP IP
Sbjct: 187 VLSFSIIMLNTSLHNPNVRDRPPFERFVSMNRGINNGSDLPEDQLRNLFDSIKSEPFSIP 246
Query: 935 EDDGNDLTHTFFTPDREGWL 994
EDDGNDLTHTFF PDREGWL
Sbjct: 247 EDDGNDLTHTFFNPDREGWL 266
>ref|NP_006412.2| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Homo
sapiens].
Length = 1849
Score = 188 bits (478), Expect = 6e-48
Identities = 93/206 (45%), Positives = 141/206 (68%), Gaps = 3/206 (1%)
Frame = +2
Query: 329 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKG 505
+++ G + E + L++ +++ G FN PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 506 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRM 685
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR FL FRLPGEAQKIDR+
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRL 800
Query: 686 MEAFAQRYCLCNPG--VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGIN 859
ME FA RY CN G +F S DT YVL++++IML T LH+P V++K E+++ MNRGIN
Sbjct: 801 MEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGIN 860
Query: 860 EGGDLPEELLRNLYDSIRNEPVQIPE 937
+ DLPEE L +Y+ I + + + E
Sbjct: 861 DSKDLPEEYLSAIYNEIAGKKISMKE 886
>ref|NP_006411.2| brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Homo
sapiens].
Length = 1785
Score = 180 bits (456), Expect = 2e-45
Identities = 90/190 (47%), Positives = 128/190 (67%), Gaps = 2/190 (1%)
Frame = +2
Query: 374 QRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 553
Q+ + G + FN PK+GIQFL E +L + E+IA+FL++ E L+ T +GD+LG+
Sbjct: 642 QQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSA 701
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG-- 727
N V++A+VD +F + V ALR FL FRLPGEAQKIDR+ME FA RY CN G
Sbjct: 702 RFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQT 761
Query: 728 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 907
+F S DT YVL++++IML T LH+P V++K E+++ MNRGIN+ DLPEE L ++Y+
Sbjct: 762 LFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYEE 821
Query: 908 IRNEPVQIPE 937
I + + + E
Sbjct: 822 IEGKKIAMKE 831
>ref|NP_001127854.1| IQ motif and SEC7 domain-containing protein 1 isoform a [Homo
sapiens].
Length = 1114
Score = 166 bits (421), Expect = 2e-41
Identities = 83/199 (41%), Positives = 133/199 (66%), Gaps = 6/199 (3%)
Frame = +2
Query: 362 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYL 541
S + R R +G FN P+KG+Q+L+E + +TP +A FL + +GL++ IG++L
Sbjct: 505 SNDVIRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFL 564
Query: 542 GERE-ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLC 718
G R+ + N VL VD +F+ + L +ALR+F R+ GEAQK++R++EAF+QRYC+C
Sbjct: 565 GNRQKQFNRDVLDCVVDEMDFSTMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCIC 624
Query: 719 NPGV---FQSTDTCYVLSFAVIMLNTSLHNPNVRD--KPGLERFVAMNRGINEGGDLPEE 883
NPGV F++ DT ++L+FA+I+LNT +++PNV+ K LE F+ RG+++G D+P E
Sbjct: 625 NPGVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIKNLRGVDDGEDIPRE 684
Query: 884 LLRNLYDSIRNEPVQIPED 940
+L +Y+ IR ++ ED
Sbjct: 685 MLMGIYERIRKRELKTNED 703
>ref|NP_055684.3| IQ motif and SEC7 domain-containing protein 1 isoform b [Homo
sapiens].
Length = 963
Score = 166 bits (421), Expect = 2e-41
Identities = 83/199 (41%), Positives = 133/199 (66%), Gaps = 6/199 (3%)
Frame = +2
Query: 362 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYL 541
S + R R +G FN P+KG+Q+L+E + +TP +A FL + +GL++ IG++L
Sbjct: 519 SNDVIRKRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFL 578
Query: 542 GERE-ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLC 718
G R+ + N VL VD +F+ + L +ALR+F R+ GEAQK++R++EAF+QRYC+C
Sbjct: 579 GNRQKQFNRDVLDCVVDEMDFSTMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCIC 638
Query: 719 NPGV---FQSTDTCYVLSFAVIMLNTSLHNPNVRD--KPGLERFVAMNRGINEGGDLPEE 883
NPGV F++ DT ++L+FA+I+LNT +++PNV+ K LE F+ RG+++G D+P E
Sbjct: 639 NPGVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIKNLRGVDDGEDIPRE 698
Query: 884 LLRNLYDSIRNEPVQIPED 940
+L +Y+ IR ++ ED
Sbjct: 699 MLMGIYERIRKRELKTNED 717
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,937,300
Number of extensions: 1209342
Number of successful extensions: 7146
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 7022
Number of HSP's successfully gapped: 23
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035311.1| cytohesin-2 isoform 1 [Mus musculus]. 530 e-151
Alignment gi|NP_001106171.1| cytohesin-2 isoform 2 [Mus musculus]. 530 e-151
Alignment gi|NP_001106169.1| cytohesin-1 isoform 2 [Mus musculus]. 448 e-126
Alignment gi|NP_035310.2| cytohesin-1 isoform 1 [Mus musculus]. 448 e-126
Alignment gi|NP_001106170.1| cytohesin-1 isoform 3 [Mus musculus]. 446 e-125
Alignment gi|NP_035312.3| cytohesin-3 isoform 1 [Mus musculus]. 429 e-120
Alignment gi|NP_001157020.1| cytohesin-3 isoform 2 [Mus musculus]. 392 e-109
Alignment gi|NP_082471.2| cytohesin-4 [Mus musculus]. 378 e-105
Alignment gi|NP_001095900.1| brefeldin A-inhibited guanine nucleotide-exc... 187 8e-48
Alignment gi|NP_001078964.1| ADP-ribosylation factor guanine nucleotide-e... 179 4e-45
>ref|NP_035311.1| cytohesin-2 isoform 1 [Mus musculus].
Length = 400
Score = 530 bits (1364), Expect = e-151
Identities = 260/266 (97%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVEHELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNL+VLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLSVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPE+LLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEDLLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|NP_001106171.1| cytohesin-2 isoform 2 [Mus musculus].
Length = 399
Score = 530 bits (1364), Expect = e-151
Identities = 260/266 (97%), Positives = 264/266 (99%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVEHELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNL+VLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLSVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPE+LLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEDLLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|NP_001106169.1| cytohesin-1 isoform 2 [Mus musculus].
Length = 397
Score = 448 bits (1152), Expect = e-126
Identities = 213/265 (80%), Positives = 241/265 (90%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
+D Y P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 3 DDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 62
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
N+++AMGRKKFNMDPKKGIQFL+EN LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
++ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 123 SIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQS 182
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 183 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 242
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 PFKIPEDDGNDLTHTFFNPDREGWL 267
>ref|NP_035310.2| cytohesin-1 isoform 1 [Mus musculus].
Length = 398
Score = 448 bits (1152), Expect = e-126
Identities = 213/265 (80%), Positives = 241/265 (90%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
+D Y P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 3 DDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 62
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
N+++AMGRKKFNMDPKKGIQFL+EN LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
++ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 123 SIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQS 182
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 183 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 242
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 PFKIPEDDGNDLTHTFFNPDREGWL 267
>ref|NP_001106170.1| cytohesin-1 isoform 3 [Mus musculus].
Length = 400
Score = 446 bits (1148), Expect = e-125
Identities = 213/265 (80%), Positives = 241/265 (90%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
E+G P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 5 EEGEDVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 64
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
N+++AMGRKKFNMDPKKGIQFL+EN LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 65 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 124
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
++ VLHAFV+LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 125 SIQVLHAFVELHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNTGVFQS 184
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 185 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 244
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 245 PFKIPEDDGNDLTHTFFNPDREGWL 269
>ref|NP_035312.3| cytohesin-3 isoform 1 [Mus musculus].
Length = 399
Score = 429 bits (1104), Expect = e-120
Identities = 204/264 (77%), Positives = 237/264 (89%)
Frame = +2
Query: 203 DGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRN 382
+G P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN
Sbjct: 8 EGGSVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRN 67
Query: 383 RKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 562
+++AMGRKKFNMDPKKGIQFL+EN+LLQ++PE++A+FLYKGEGLNKT IGDYLGER++ N
Sbjct: 68 KQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFN 127
Query: 563 LAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQST 742
+ VL AFV+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVFQST
Sbjct: 128 IKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQST 187
Query: 743 DTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEP 922
DTCYVLSFA+IMLNTSLHN NVRDKP ERF+ MNRGINEGGDLPEELLRNLY+SI+NEP
Sbjct: 188 DTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEGGDLPEELLRNLYESIKNEP 247
Query: 923 VQIPEDDGNDLTHTFFTPDREGWL 994
+IPEDDGNDLTHTFF PDREGWL
Sbjct: 248 FKIPEDDGNDLTHTFFNPDREGWL 271
>ref|NP_001157020.1| cytohesin-3 isoform 2 [Mus musculus].
Length = 351
Score = 392 bits (1006), Expect = e-109
Identities = 183/223 (82%), Positives = 206/223 (92%)
Frame = +2
Query: 326 MSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKG 505
M+E++ L + E SKT QRN+++AMGRKKFNMDPKKGIQFL+EN+LLQ++PE++A+FLYKG
Sbjct: 1 MTEIDNLTSVEESKTTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKG 60
Query: 506 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRM 685
EGLNKT IGDYLGER++ N+ VL AFV+LHEF DLNLVQALRQFLWSFRLPGEAQKIDRM
Sbjct: 61 EGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRM 120
Query: 686 MEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEG 865
MEAFA RYCLCNPGVFQSTDTCYVLSFA+IMLNTSLHN NVRDKP ERF+ MNRGINEG
Sbjct: 121 MEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNRGINEG 180
Query: 866 GDLPEELLRNLYDSIRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
GDLPEELLRNLY+SI+NEP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 181 GDLPEELLRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWL 223
>ref|NP_082471.2| cytohesin-4 [Mus musculus].
Length = 393
Score = 378 bits (970), Expect = e-105
Identities = 175/260 (67%), Positives = 219/260 (84%)
Frame = +2
Query: 215 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 394
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E+ E S+ Q+ ++M
Sbjct: 7 DPAELSSGEAKELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFESTEESRMAQKEKEMC 66
Query: 395 MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 574
+GRKKFNMDP KGIQ+L+E++LL + ++IA+FLYKG+GLNKTAIG YLGE++ +NL VL
Sbjct: 67 IGRKKFNMDPNKGIQYLIEHKLLTSDVQDIAQFLYKGDGLNKTAIGTYLGEKDPINLQVL 126
Query: 575 HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY 754
AFVD HEF +LNLVQALRQFLWSFRLPGEAQKIDRMMEAFA RYCLCNPGVF+STDTCY
Sbjct: 127 QAFVDCHEFANLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAARYCLCNPGVFRSTDTCY 186
Query: 755 VLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIP 934
VLSF+VIMLNT LHNPNVRD+P ERFV MNRGIN G DLPEE LRNL+DSI++EP IP
Sbjct: 187 VLSFSVIMLNTGLHNPNVRDRPPFERFVTMNRGINSGSDLPEEQLRNLFDSIKSEPFSIP 246
Query: 935 EDDGNDLTHTFFTPDREGWL 994
EDDG DLTHTFF PDREGWL
Sbjct: 247 EDDGGDLTHTFFNPDREGWL 266
>ref|NP_001095900.1| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Mus
musculus].
Length = 1846
Score = 187 bits (476), Expect = 8e-48
Identities = 93/206 (45%), Positives = 141/206 (68%), Gaps = 3/206 (1%)
Frame = +2
Query: 329 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKG 505
+++ G + E + L++ +++ G FN PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 678 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 737
Query: 506 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRM 685
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR FL FRLPGEAQKIDR+
Sbjct: 738 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRLFLEGFRLPGEAQKIDRL 797
Query: 686 MEAFAQRYCLCNPG--VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGIN 859
ME FA RY CN G +F S DT YVL++++IML T LH+P V++K E+++ MNRGIN
Sbjct: 798 MEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGIN 857
Query: 860 EGGDLPEELLRNLYDSIRNEPVQIPE 937
+ DLPEE L +Y+ I + + + E
Sbjct: 858 DSKDLPEEYLSAIYNEIAGKKISMKE 883
>ref|NP_001078964.1| ADP-ribosylation factor guanine nucleotide-exchange factor 2
(brefeldin A-inhibited) [Mus musculus].
Length = 1792
Score = 179 bits (453), Expect = 4e-45
Identities = 90/190 (47%), Positives = 127/190 (66%), Gaps = 2/190 (1%)
Frame = +2
Query: 374 QRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 553
Q+ + G + FN PK+GIQFL E +L E+IA+FL++ E L+ T +G++LG+
Sbjct: 649 QQKEIIEHGIELFNKKPKRGIQFLQEQGMLGAAVEDIAQFLHQEERLDSTQVGEFLGDST 708
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPG-- 727
N V++A+VD +F + V ALR FL FRLPGEAQKIDR+ME FA RY CN G
Sbjct: 709 RFNKEVMYAYVDQLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQT 768
Query: 728 VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDS 907
+F S DT YVL++++IML T LH+P V++K E+++ MNRGIN+ DLPEE L ++YD
Sbjct: 769 LFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYDE 828
Query: 908 IRNEPVQIPE 937
I + + + E
Sbjct: 829 IEGKKIAMKE 838
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,518,220
Number of extensions: 983713
Number of successful extensions: 6004
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5819
Number of HSP's successfully gapped: 22
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137592.1| cytohesin-2 [Sus scrofa]. 531 e-151
Alignment gi|XP_003131213.2| PREDICTED: cytohesin-1-like [Sus scrofa]. 441 e-124
Alignment gi|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa]. 439 e-123
Alignment gi|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa]. 439 e-123
Alignment gi|XP_003355404.1| PREDICTED: hypothetical protein LOC100624216... 391 e-109
Alignment gi|NP_001137593.1| cytohesin-4 [Sus scrofa]. 384 e-107
Alignment gi|XP_001928045.1| PREDICTED: brefeldin A-inhibited guanine nuc... 186 2e-47
Alignment gi|XP_003358590.1| PREDICTED: IQ motif and SEC7 domain-containi... 166 2e-41
Alignment gi|XP_003126635.2| PREDICTED: IQ motif and SEC7 domain-containi... 158 5e-39
Alignment gi|XP_003135163.2| PREDICTED: IQ motif and SEC7 domain-containi... 153 2e-37
>ref|NP_001137592.1| cytohesin-2 [Sus scrofa].
Length = 399
Score = 531 bits (1368), Expect = e-151
Identities = 262/266 (98%), Positives = 263/266 (98%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
RNRKMAMGRKKFNMDPKKGIQFLVENEL QNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELPQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 180
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN
Sbjct: 181 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 240
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 241 EPFKIPEDDGNDLTHTFFNPDREGWL 266
>ref|XP_003131213.2| PREDICTED: cytohesin-1-like [Sus scrofa].
Length = 516
Score = 441 bits (1133), Expect = e-124
Identities = 210/265 (79%), Positives = 239/265 (90%)
Frame = +2
Query: 200 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 379
ED Y P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 380 NRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 559
++++AMGRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 63 SKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDEF 122
Query: 560 NLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQS 739
N+ VLHAFV LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQS
Sbjct: 123 NIQVLHAFVGLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQS 182
Query: 740 TDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNE 919
TDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+NE
Sbjct: 183 TDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKNE 242
Query: 920 PVQIPEDDGNDLTHTFFTPDREGWL 994
P +IPEDDGNDLTHTFF PDREGWL
Sbjct: 243 PFKIPEDDGNDLTHTFFNPDREGWL 267
>ref|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa].
Length = 395
Score = 439 bits (1128), Expect = e-123
Identities = 210/266 (78%), Positives = 241/266 (90%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
M+DG+ P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +Q
Sbjct: 1 MKDGI--PSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQ 58
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
R++++AMGRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 59 RSKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDE 118
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
N+ VLHAFV LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQ
Sbjct: 119 FNIQVLHAFVGLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQ 178
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+N
Sbjct: 179 STDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKN 238
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 239 EPFKIPEDDGNDLTHTFFNPDREGWL 264
>ref|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa].
Length = 394
Score = 439 bits (1128), Expect = e-123
Identities = 210/266 (78%), Positives = 241/266 (90%)
Frame = +2
Query: 197 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 376
M+DG+ P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +Q
Sbjct: 1 MKDGI--PSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQ 58
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 556
R++++AMGRKKFNMDPKKGIQFL+EN+LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 59 RSKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDE 118
Query: 557 LNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ 736
N+ VLHAFV LHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYC CN GVFQ
Sbjct: 119 FNIQVLHAFVGLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCQCNNGVFQ 178
Query: 737 STDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRN 916
STDTCYVLSFA+IMLNTSLHNPNV+DKP +ERF+AMNRGIN+GGDLPEELLRNLY+SI+N
Sbjct: 179 STDTCYVLSFAIIMLNTSLHNPNVKDKPTVERFIAMNRGINDGGDLPEELLRNLYESIKN 238
Query: 917 EPVQIPEDDGNDLTHTFFTPDREGWL 994
EP +IPEDDGNDLTHTFF PDREGWL
Sbjct: 239 EPFKIPEDDGNDLTHTFFNPDREGWL 264
>ref|XP_003355404.1| PREDICTED: hypothetical protein LOC100624216 [Sus scrofa].
Length = 953
Score = 391 bits (1005), Expect = e-109
Identities = 188/300 (62%), Positives = 231/300 (77%)
Frame = +2
Query: 95 PGAFERAHPSPRANADPGPTGGTAPDSPRAFLAAMEDGVYEPPDLTPEERMELENIRRRK 274
P F + P D G PD PR +P +L+ E EL+ I+ +
Sbjct: 534 PHVFRKGREQPPPTGDAPAGGRPPPDHPRC---------PDPGELSSGETEELQRIKWHR 584
Query: 275 QELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVEN 454
++LL +IQ+L+EE+++ ++++ E E S+ Q+ +++++GRKKFNMDP KGIQ+L+E+
Sbjct: 585 KQLLEDIQKLKEEIADVFAQIDCFETAEESRVAQKEKELSIGRKKFNMDPVKGIQYLIEH 644
Query: 455 ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQ 634
+LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL AFVD HEF +LNLVQALRQ
Sbjct: 645 KLLSPDVQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVLQAFVDCHEFANLNLVQALRQ 704
Query: 635 FLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAVIMLNTSLHNPNVRD 814
FLWSFRLPGEAQKIDRMME FA RYCLCNPGVFQSTDTCYVLSF++IMLNTSLHNPNVRD
Sbjct: 705 FLWSFRLPGEAQKIDRMMETFAARYCLCNPGVFQSTDTCYVLSFSIIMLNTSLHNPNVRD 764
Query: 815 KPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIPEDDGNDLTHTFFTPDREGWL 994
+P ERFV+MNRGIN+G DLPEE LRNL+DSI+NEP IPEDDGNDLTHTFF PDREGWL
Sbjct: 765 RPPFERFVSMNRGINDGSDLPEEQLRNLFDSIKNEPFSIPEDDGNDLTHTFFNPDREGWL 824
>ref|NP_001137593.1| cytohesin-4 [Sus scrofa].
Length = 394
Score = 384 bits (986), Expect = e-107
Identities = 179/260 (68%), Positives = 221/260 (85%)
Frame = +2
Query: 215 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 394
+P +L+ E EL+ I+ +++LL +IQ+L+EE+++ ++++ E E S+ Q+ ++++
Sbjct: 7 DPGELSSGETEELQRIKWHRKQLLEDIQKLKEEIADVFAQIDCFETAEESRVAQKEKELS 66
Query: 395 MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 574
+GRKKFNMDP KGIQ+L+E++LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPVKGIQYLIEHKLLSPDVQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 575 HAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCY 754
AFVD HEF +LNLVQALRQFLWSFRLPGEAQKIDRMME FA RYCLCNPGVFQSTDTCY
Sbjct: 127 QAFVDCHEFANLNLVQALRQFLWSFRLPGEAQKIDRMMETFAARYCLCNPGVFQSTDTCY 186
Query: 755 VLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPVQIP 934
VLSF++IMLNTSLHNPNVRD+P ERFV+MNRGIN+G DLPEE LRNL+DSI+NEP IP
Sbjct: 187 VLSFSIIMLNTSLHNPNVRDRPPFERFVSMNRGINDGSDLPEEQLRNLFDSIKNEPFSIP 246
Query: 935 EDDGNDLTHTFFTPDREGWL 994
EDDGNDLTHTFF PDREGWL
Sbjct: 247 EDDGNDLTHTFFNPDREGWL 266
>ref|XP_001928045.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein
1 [Sus scrofa].
Length = 1849
Score = 186 bits (472), Expect = 2e-47
Identities = 92/206 (44%), Positives = 140/206 (67%), Gaps = 3/206 (1%)
Frame = +2
Query: 329 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKG 505
+++ G + E + L++ +++ G F PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFTKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 506 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRM 685
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR FL FRLPGEAQKIDR+
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRL 800
Query: 686 MEAFAQRYCLCNPG--VFQSTDTCYVLSFAVIMLNTSLHNPNVRDKPGLERFVAMNRGIN 859
ME FA RY CN G +F S DT YVL++++IML T LH+P V++K E+++ MNRGIN
Sbjct: 801 MEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYIKMNRGIN 860
Query: 860 EGGDLPEELLRNLYDSIRNEPVQIPE 937
+ DLPEE L +Y+ I + + + E
Sbjct: 861 DSKDLPEEYLSAIYNEIAGKKISMKE 886
>ref|XP_003358590.1| PREDICTED: IQ motif and SEC7 domain-containing protein 1, partial
[Sus scrofa].
Length = 1108
Score = 166 bits (420), Expect = 2e-41
Identities = 85/199 (42%), Positives = 133/199 (66%), Gaps = 6/199 (3%)
Frame = +2
Query: 362 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYL 541
S + R R +G FN P+KGIQ+L+E + +TP +A FL + +GL++ IG++L
Sbjct: 496 SNDVIRKRHYRIGLNLFNKKPEKGIQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFL 555
Query: 542 GERE-ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLC 718
G R+ + N VL VD +F+ + L +ALR+F R+ GEAQK++R++EAF+QRYC+C
Sbjct: 556 GNRQKQFNRDVLDCVVDEMDFSAMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCIC 615
Query: 719 NPGV---FQSTDTCYVLSFAVIMLNTSLHNPNVRD--KPGLERFVAMNRGINEGGDLPEE 883
NPGV F++ DT ++L+FA+I+LNT +++PNV+ K LE FV RG+++G D+P E
Sbjct: 616 NPGVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFVKNLRGVDDGEDIPRE 675
Query: 884 LLRNLYDSIRNEPVQIPED 940
+L +Y+ IR ++ ED
Sbjct: 676 MLIGIYERIRKRELKTNED 694
>ref|XP_003126635.2| PREDICTED: IQ motif and SEC7 domain-containing protein 3 [Sus
scrofa].
Length = 773
Score = 158 bits (399), Expect = 5e-39
Identities = 79/194 (40%), Positives = 130/194 (67%), Gaps = 6/194 (3%)
Frame = +2
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGE-RE 553
R R +G FN++P KGIQFL+ + +TP +A FL + +GL++ IG++LG ++
Sbjct: 362 RKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKK 421
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGV- 730
+ N VL VD +F+ + L +ALR+F R+ GEAQK++R++EAF+QRYC+CNP V
Sbjct: 422 QFNRDVLDCVVDEMDFSAMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVV 481
Query: 731 --FQSTDTCYVLSFAVIMLNTSLHNPNVRD--KPGLERFVAMNRGINEGGDLPEELLRNL 898
F + DT ++L+FA+I+LNT +++PN++ K LE F+ RG+++G D+P EL+ +
Sbjct: 482 QQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGI 541
Query: 899 YDSIRNEPVQIPED 940
Y+ I+ + ++ ED
Sbjct: 542 YERIQQKELKSNED 555
>ref|XP_003135163.2| PREDICTED: IQ motif and SEC7 domain-containing protein 2 [Sus
scrofa].
Length = 1283
Score = 153 bits (386), Expect = 2e-37
Identities = 76/194 (39%), Positives = 128/194 (65%), Gaps = 6/194 (3%)
Frame = +2
Query: 377 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE- 553
+ R +G FN P+KGIQ+L+E L +TP +A F+ + +GL++ IG++LG R+
Sbjct: 548 QRRHYRIGLNLFNKKPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQK 607
Query: 554 ELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGV- 730
+ N VL VD +F+ ++L ALR+F R+ GEAQK++R++EAF+QRYC+CNP +
Sbjct: 608 QFNRDVLDCVVDEMDFSSMDLDDALRKFQSHIRVQGEAQKVERLIEAFSQRYCVCNPALV 667
Query: 731 --FQSTDTCYVLSFAVIMLNTSLHNPNVR--DKPGLERFVAMNRGINEGGDLPEELLRNL 898
F++ DT ++L+FA+I+LNT +++P+V+ K L+ F+ RG++ G D+P +LL +
Sbjct: 668 RQFRNPDTIFILAFAIILLNTDMYSPSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGI 727
Query: 899 YDSIRNEPVQIPED 940
Y I+ ++ +D
Sbjct: 728 YQRIQGRELRTNDD 741
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,751,380
Number of extensions: 790282
Number of successful extensions: 4852
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4756
Number of HSP's successfully gapped: 16
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002753
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 426 e-116
Sscrofa_Chr12 127 1e-26
Sscrofa_Chr05 119 3e-24
gb|GL894906.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 58 1e-05
>Sscrofa_Chr06
|| Length = 157765593
Score = 426 bits (215), Expect = e-116
Identities = 215/215 (100%)
Strand = Plus / Minus
Query: 1 aaacgaggggcggtccctactggcggggcggttgggagacgaagggagagtcttttcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49549491 aaacgaggggcggtccctactggcggggcggttgggagacgaagggagagtcttttcagc 49549432
Query: 61 gctgaggactggcgctgaggaggcggcggtggctcccggggcgtttgagcgggctcaccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49549431 gctgaggactggcgctgaggaggcggcggtggctcccggggcgtttgagcgggctcaccc 49549372
Query: 121 gagcccgcgggccaacgcggatccaggcccgaccggcgggaccgccccggactccccgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49549371 gagcccgcgggccaacgcggatccaggcccgaccggcgggaccgccccggactccccgcg 49549312
Query: 181 ggccttcctagccgccatggaggacggtgtctacg 215
|||||||||||||||||||||||||||||||||||
Sbjct: 49549311 ggccttcctagccgccatggaggacggtgtctacg 49549277
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 741 cagacacgtgctacgtgctgtccttcgctgtgatcatgctgaacaccagcctccacaacc 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49544264 cagacacgtgctacgtgctgtccttcgctgtgatcatgctgaacaccagcctccacaacc 49544205
Query: 801 ccaacgtccgggacaagccgggcctggagcgcttcgtggccatgaaccggggcatcaacg 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49544204 ccaacgtccgggacaagccgggcctggagcgcttcgtggccatgaaccggggcatcaacg 49544145
Query: 861 agggcggggacctgcccgaggagctgctcagg 892
||||||||||||||||||||||||||||||||
Sbjct: 49544144 agggcggggacctgcccgaggagctgctcagg 49544113
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 215 gagcccccggacctgactcccgaggagcggatggagctggagaacatccggcggcggaag 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548432 gagcccccggacctgactcccgaggagcggatggagctggagaacatccggcggcggaag 49548373
Query: 275 caggagctgctggtggagatccagcgcctgcgggaggagctcagcgaagccatgagcgaa 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548372 caggagctgctggtggagatccagcgcctgcgggaggagctcagcgaagccatgagcgaa 49548313
Query: 335 gtcgaggggctggaggccaatgagggcag 363
|||||||||||||||||||||||||||||
Sbjct: 49548312 gtcgaggggctggaggccaatgagggcag 49548284
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 429 aggggatccagttcctggtggagaatgaacttctacagaacacccccgaggagatcgccc 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49546597 aggggatccagttcctggtggagaatgaacttctacagaacacccccgaggagatcgccc 49546538
Query: 489 gcttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctgggggaga 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49546537 gcttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctgggggaga 49546478
Query: 549 gg 550
||
Sbjct: 49546477 gg 49546476
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 628 caggcaatttctctggagcttccgcctccctggagaggcccagaagatcgaccgcatgat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49544484 caggcaatttctctggagcttccgcctccctggagaggcccagaagatcgaccgcatgat 49544425
Query: 688 ggaagcctttgcccagcgctactgcctgtgcaaccccggggttttccagtccacag 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49544424 ggaagcctttgcccagcgctactgcctgtgcaaccccggggttttccagtccacag 49544369
Score = 168 bits (85), Expect = 4e-39
Identities = 102/105 (97%), Gaps = 2/105 (1%)
Strand = Plus / Minus
Query: 892 gaacctctacgacagcatccgaaatgagcccgttca-gattcccgaggacgacggcaacg 950
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 49543630 gaacctctacgacagcatccgaaatgagcc-gttcaagattcccgaggacgacggcaacg 49543572
Query: 951 acctgactcacaccttcttcaccccggaccgggagggctggctcc 995
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 49543571 acctgactcacaccttcttcaacccggaccgggagggctggctcc 49543527
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 548 agggaagagttgaacctggcagtgctccatgcctttgtggatctgcacgagttcaccgac 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49545298 agggaagagttgaacctggcagtgctccatgcctttgtggatctgcacgagttcaccgac 49545239
Query: 608 ctcaatctggtgcaggccctcagg 631
||||||||||||||||||||||||
Sbjct: 49545238 ctcaatctggtgcaggccctcagg 49545215
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 360 gcagcaagaccttgcagcggaaccggaagatggcaatgggcaggaagaagttcaacatgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548189 gcagcaagaccttgcagcggaaccggaagatggcaatgggcaggaagaagttcaacatgg 49548130
Query: 420 accccaaaaagg 431
||||||||||||
Sbjct: 49548129 accccaaaaagg 49548118
>Sscrofa_Chr12
|| Length = 63588571
Score = 127 bits (64), Expect = 1e-26
Identities = 103/116 (88%)
Strand = Plus / Plus
Query: 628 caggcaatttctctggagcttccgcctccctggagaggcccagaagatcgaccgcatgat 687
|||||| || || ||||||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 3456819 caggcagttcctgtggagcttccggctgccaggagaggcccagaagatcgaccggatgat 3456878
Query: 688 ggaagcctttgcccagcgctactgcctgtgcaaccccggggttttccagtccacag 743
||| |||||||||||||||||||| | ||||||| |||||| |||||||||||||
Sbjct: 3456879 ggaggcctttgcccagcgctactgtcagtgcaacaacggggtgttccagtccacag 3456934
Score = 95.6 bits (48), Expect = 4e-17
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 742 agacacgtgctacgtgctgtccttcgctgtgatcatgctgaacaccagcctccacaaccc 801
|||||| |||||||| || ||||| || | |||||||||||||||||||| ||||||||
Sbjct: 3458746 agacacctgctacgtcctctcctttgccatcatcatgctgaacaccagcctgcacaaccc 3458805
Query: 802 caacgtccgggacaagccgggcctggagcgcttcgtggccatgaaccggggcatcaacga 861
||||||| |||||||| ||||| | ||| | |||||||| || |||||||||||
Sbjct: 3458806 caacgtcaaagacaagcccactgtggagaggttcattgccatgaatcgcggcatcaacga 3458865
Query: 862 gggcggggacctgcccgaggagctgctc 889
|| ||||||||||| ||||||||||||
Sbjct: 3458866 cgggggggacctgcctgaggagctgctc 3458893
Score = 69.9 bits (35), Expect = 3e-09
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 429 aggggatccagttcctggtggagaatgaacttctacagaacacccccgaggagatcgccc 488
||||||||||||||||| | ||||| || || || ||||||| ||||| |||||||
Sbjct: 3455539 aggggatccagttcctgatagagaacgacctgctgaagaacacgtgtgaggacatcgccc 3455598
Query: 489 gcttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctgggggag 547
||||||| || || ||||| || ||||||||||||||||| |||||||||||||||
Sbjct: 3455599 agttcctgtgcagaggagaagggctcaacaagacggccatcggcgactacctgggggag 3455657
Score = 65.9 bits (33), Expect = 4e-08
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 247 ggagctggagaacatccggcggcggaagcaggagctgctgg 287
|||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 3451435 ggagctggggaacatccggcggaggaagcaggagctgctgg 3451475
Score = 65.9 bits (33), Expect = 4e-08
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 935 gaggacgacggcaacgacctgactcacaccttcttcaccccggaccgggagggctggctc 994
||||| |||||||| ||||| || ||||||||||||| ||| |||||||| |||||||||
Sbjct: 3459303 gaggatgacggcaatgacctcacgcacaccttcttcaaccctgaccgggaaggctggctc 3459362
Query: 995 c 995
|
Sbjct: 3459363 c 3459363
>Sscrofa_Chr05
|| Length = 111506441
Score = 119 bits (60), Expect = 3e-24
Identities = 123/144 (85%)
Strand = Plus / Minus
Query: 741 cagacacgtgctacgtgctgtccttcgctgtgatcatgctgaacaccagcctccacaacc 800
||||||| |||||||| ||||||||| | | |||||||| |||||||||||||||||||
Sbjct: 8085014 cagacacctgctacgtcctgtccttctccatcatcatgctcaacaccagcctccacaacc 8084955
Query: 801 ccaacgtccgggacaagccgggcctggagcgcttcgtggccatgaaccggggcatcaacg 860
|||| ||||| |||| |||| | | |||||||| ||| |||||||||| |||||||| |
Sbjct: 8084954 ccaatgtccgagacaggccgcccttcgagcgctttgtgtccatgaaccgaggcatcaatg 8084895
Query: 861 agggcggggacctgcccgaggagc 884
| ||| | ||||||||||||||||
Sbjct: 8084894 acggcagtgacctgcccgaggagc 8084871
Score = 83.8 bits (42), Expect = 2e-13
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 932 cccgaggacgacggcaacgacctgactcacaccttcttcaccccggaccgggagggctgg 991
||||||||||||||||| ||||| |||||||||||||||| ||| ||||| |||||||||
Sbjct: 8078433 cccgaggacgacggcaatgacctcactcacaccttcttcaaccccgaccgagagggctgg 8078374
Query: 992 ct 993
||
Sbjct: 8078373 ct 8078372
Score = 69.9 bits (35), Expect = 3e-09
Identities = 86/103 (83%)
Strand = Plus / Minus
Query: 641 tggagcttccgcctccctggagaggcccagaagatcgaccgcatgatggaagcctttgcc 700
||||||||||| || || || |||||||||||||||||||| |||||||| |||||||
Sbjct: 8086894 tggagcttccggctgccaggcgaggcccagaagatcgaccgtatgatggagacctttgct 8086835
Query: 701 cagcgctactgcctgtgcaaccccggggttttccagtccacag 743
|| |||||||| || ||||| || || |||||||||||||
Sbjct: 8086834 gcccgatactgcctctgtaacccgggcgtcttccagtccacag 8086792
>gb|GL894906.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3524
Length = 31341
Score = 58.0 bits (29), Expect = 1e-05
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 491 ttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctggg 543
|||||||| || |||||||||||||| ||||||| ||||||||||| |||||
Sbjct: 16022 ttcctgtataaaggcgaaggcctgaataagacggtgatcggggactatctggg 15970
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,619,037
Number of extensions: 119
Number of successful extensions: 119
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 18
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)