Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070562.1| cytohesin-2 [Bos taurus]. 284 6e-77
Alignment gi|XP_002696202.1| PREDICTED: cytohesin 1 [Bos taurus]. 212 3e-55
Alignment gi|XP_001789922.1| PREDICTED: cytohesin 1 [Bos taurus]. 212 3e-55
Alignment gi|XP_002698196.1| PREDICTED: Cyth3 protein-like [Bos taurus]. 195 5e-50
Alignment gi|XP_875914.4| PREDICTED: Cyth3 protein-like [Bos taurus]. 195 5e-50
Alignment gi|XP_002687738.1| PREDICTED: cytohesin 4 [Bos taurus]. 156 2e-38
Alignment gi|XP_001788810.1| PREDICTED: cytohesin 4 isoform 1 [Bos taurus]. 156 2e-38
Alignment gi|NP_776422.1| brefeldin A-inhibited guanine nucleotide-exchan... 77 2e-14
Alignment gi|NP_001192581.1| brefeldin A-inhibited guanine nucleotide-exc... 71 1e-12
Alignment gi|XP_002692541.1| PREDICTED: cytohesin 1-like [Bos taurus]. 71 1e-12
>ref|NP_001070562.1| cytohesin-2 [Bos taurus].
Length = 410
Score = 284 bits (727), Expect = 6e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|XP_002696202.1| PREDICTED: cytohesin 1 [Bos taurus].
Length = 411
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_001789922.1| PREDICTED: cytohesin 1 [Bos taurus].
Length = 410
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_002698196.1| PREDICTED: Cyth3 protein-like [Bos taurus].
Length = 651
Score = 195 bits (495), Expect = 5e-50
Identities = 93/138 (67%), Positives = 121/138 (87%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AM
Sbjct: 130 PEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQVAM 189
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDP+KGIQFL+E++LLQ++PE++A+FLYKGEGLNKT IGDYLGER+E N+ VL
Sbjct: 190 GRKKFNMDPRKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQ 249
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEF DLNLVQALR
Sbjct: 250 AFVELHEFADLNLVQALR 267
>ref|XP_875914.4| PREDICTED: Cyth3 protein-like [Bos taurus].
Length = 651
Score = 195 bits (495), Expect = 5e-50
Identities = 93/138 (67%), Positives = 121/138 (87%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AM
Sbjct: 130 PEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQVAM 189
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDP+KGIQFL+E++LLQ++PE++A+FLYKGEGLNKT IGDYLGER+E N+ VL
Sbjct: 190 GRKKFNMDPRKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDEFNIKVLQ 249
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEF DLNLVQALR
Sbjct: 250 AFVELHEFADLNLVQALR 267
>ref|XP_002687738.1| PREDICTED: cytohesin 4 [Bos taurus].
Length = 394
Score = 156 bits (395), Expect = 2e-38
Identities = 74/139 (53%), Positives = 107/139 (76%)
Frame = +1
Query: 196 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 375
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E E S+ QR +++
Sbjct: 7 DPGELSSGEAEELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFETAEESRMAQREKELC 66
Query: 376 MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 555
+GRKKFNMDP KGIQ+L+E +LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPMKGIQYLIEHKLLTPDAQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 556 HAFVDLHEFTDLNLVQALR 612
AFVD HEF +LNLVQALR
Sbjct: 127 QAFVDCHEFANLNLVQALR 145
>ref|XP_001788810.1| PREDICTED: cytohesin 4 isoform 1 [Bos taurus].
Length = 394
Score = 156 bits (395), Expect = 2e-38
Identities = 74/139 (53%), Positives = 107/139 (76%)
Frame = +1
Query: 196 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 375
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E E S+ QR +++
Sbjct: 7 DPGELSSGEAEELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFETAEESRMAQREKELC 66
Query: 376 MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 555
+GRKKFNMDP KGIQ+L+E +LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPMKGIQYLIEHKLLTPDAQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 556 HAFVDLHEFTDLNLVQALR 612
AFVD HEF +LNLVQALR
Sbjct: 127 QAFVDCHEFANLNLVQALR 145
>ref|NP_776422.1| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Bos
taurus].
Length = 1849
Score = 77.4 bits (189), Expect = 2e-14
Identities = 37/102 (36%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKG 486
+++ G + E + L++ +++ G F PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFTKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 487 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALR 782
>ref|NP_001192581.1| brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Bos
taurus].
Length = 1779
Score = 70.9 bits (172), Expect = 1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Frame = +1
Query: 355 QRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 534
Q+ + G + FN PK+GIQ+L E +L + E+IA+FL++ E L+ T +GD+LGE
Sbjct: 636 QQKEMIEHGIELFNKKPKRGIQYLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGESM 695
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
+ N V++A+VD +F + V ALR
Sbjct: 696 KFNKEVMYAYVDQLDFCEKEFVSALR 721
>ref|XP_002692541.1| PREDICTED: cytohesin 1-like [Bos taurus].
Length = 1779
Score = 70.9 bits (172), Expect = 1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%)
Frame = +1
Query: 355 QRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 534
Q+ + G + FN PK+GIQ+L E +L + E+IA+FL++ E L+ T +GD+LGE
Sbjct: 636 QQKEMIEHGIELFNKKPKRGIQYLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGESM 695
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
+ N V++A+VD +F + V ALR
Sbjct: 696 KFNKEVMYAYVDQLDFCEKEFVSALR 721
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,147,633
Number of extensions: 1030487
Number of successful extensions: 6222
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6121
Number of HSP's successfully gapped: 13
Length of query: 291
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 190
Effective length of database: 14,339,486
Effective search space: 2724502340
Effective search space used: 2724502340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852119.1| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 284 7e-77
Alignment gi|XP_533630.2| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 284 7e-77
Alignment gi|XP_864950.1| PREDICTED: similar to pleckstrin homology, Sec7... 284 7e-77
Alignment gi|XP_864987.1| PREDICTED: similar to Cytohesin 2 (ARF nucleoti... 269 3e-72
Alignment gi|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 212 3e-55
Alignment gi|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 212 3e-55
Alignment gi|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 212 3e-55
Alignment gi|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 212 3e-55
Alignment gi|XP_851399.1| PREDICTED: similar to Cytohesin 3 (ARF nucleoti... 203 2e-52
Alignment gi|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog... 199 2e-51
>ref|XP_852119.1| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 2
[Canis familiaris].
Length = 400
Score = 284 bits (727), Expect = 7e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|XP_533630.2| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 1
[Canis familiaris].
Length = 436
Score = 284 bits (727), Expect = 7e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|XP_864950.1| PREDICTED: similar to pleckstrin homology, Sec7 and coiled/coil
domains 2 isoform 2 isoform 3 [Canis familiaris].
Length = 399
Score = 284 bits (727), Expect = 7e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|XP_864987.1| PREDICTED: similar to Cytohesin 2 (ARF nucleotide-binding site
opener) (ARNO protein) (ARF exchange factor) isoform 5
[Canis familiaris].
Length = 406
Score = 269 bits (687), Expect = 3e-72
Identities = 142/163 (87%), Positives = 144/163 (88%), Gaps = 18/163 (11%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGER-- 531
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGER
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGERCL 120
Query: 532 ----------------EELNLAVLHAFVDLHEFTDLNLVQALR 612
+LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 GALWTSGAYGDCFRSIWDLNLAVLHAFVDLHEFTDLNLVQALR 163
>ref|XP_857200.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 5
[Canis familiaris].
Length = 399
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_848819.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 1
[Canis familiaris].
Length = 400
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_857113.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 4
[Canis familiaris].
Length = 404
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_857072.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 3
[Canis familiaris].
Length = 395
Score = 212 bits (540), Expect = 3e-55
Identities = 102/138 (73%), Positives = 123/138 (89%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLH 558
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E N+ VLH
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLH 130
Query: 559 AFVDLHEFTDLNLVQALR 612
AFV+LHEFTDLNLVQALR
Sbjct: 131 AFVELHEFTDLNLVQALR 148
>ref|XP_851399.1| PREDICTED: similar to Cytohesin 3 (ARF nucleotide-binding site
opener 3) (ARNO3 protein) (General receptor of
phosphoinositides 1) (Grp1) (CLM-3) [Canis familiaris].
Length = 576
Score = 203 bits (516), Expect = 2e-52
Identities = 111/195 (56%), Positives = 139/195 (71%), Gaps = 6/195 (3%)
Frame = +1
Query: 46 RTGAEEAAVAPGAFER------AHPSPRANADPGPTGGTAPDSPRAFLAAMEDGVYEPPD 207
RTGA A+A GA A PS R G G D GV P D
Sbjct: 135 RTGARPGALAVGADRPLARSALAAPSARGPGLAGSGSGLYMDEDGGGGGGEGGGV--PED 192
Query: 208 LTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRK 387
L+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN+++AMGRK
Sbjct: 193 LSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRNKQIAMGRK 252
Query: 388 KFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFV 567
KFNMDPKKGIQFL+E++LLQN+PE++A+FLYKGEGLNKT IGDYLGER++ N+ VL AFV
Sbjct: 253 KFNMDPKKGIQFLIENDLLQNSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFV 312
Query: 568 DLHEFTDLNLVQALR 612
+LHEF DLNLVQALR
Sbjct: 313 ELHEFADLNLVQALR 327
>ref|XP_857032.1| PREDICTED: similar to Cytohesin 1 (SEC7 homolog B2-1) isoform 2
[Canis familiaris].
Length = 413
Score = 199 bits (507), Expect = 2e-51
Identities = 102/160 (63%), Positives = 123/160 (76%), Gaps = 22/160 (13%)
Frame = +1
Query: 199 PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAM 378
P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QRN+++AM
Sbjct: 11 PSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQRNKQVAM 70
Query: 379 GRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGE---------- 528
GRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGE
Sbjct: 71 GRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERSLESQARFL 130
Query: 529 ------------REELNLAVLHAFVDLHEFTDLNLVQALR 612
R+E N+ VLHAFV+LHEFTDLNLVQALR
Sbjct: 131 TSTPTPIFVFLARDEFNIQVLHAFVELHEFTDLNLVQALR 170
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,367,920
Number of extensions: 1005561
Number of successful extensions: 6596
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 6507
Number of HSP's successfully gapped: 26
Length of query: 291
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 189
Effective length of database: 15,474,232
Effective search space: 2924629848
Effective search space used: 2924629848
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059431.1| cytohesin-2 isoform 1 [Homo sapiens]. 284 6e-77
Alignment gi|NP_004219.3| cytohesin-2 isoform 2 [Homo sapiens]. 284 6e-77
Alignment gi|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens]. 217 1e-56
Alignment gi|NP_004753.1| cytohesin-1 isoform 1 [Homo sapiens]. 217 1e-56
Alignment gi|NP_004218.1| cytohesin-3 [Homo sapiens]. 196 2e-50
Alignment gi|NP_037517.1| cytohesin-4 [Homo sapiens]. 157 2e-38
Alignment gi|NP_006412.2| brefeldin A-inhibited guanine nucleotide-exchan... 80 3e-15
Alignment gi|NP_006411.2| brefeldin A-inhibited guanine nucleotide-exchan... 70 2e-12
Alignment gi|NP_056047.1| IQ motif and SEC7 domain-containing protein 3 i... 65 6e-11
Alignment gi|NP_001164209.1| IQ motif and SEC7 domain-containing protein ... 65 6e-11
>ref|NP_059431.1| cytohesin-2 isoform 1 [Homo sapiens].
Length = 400
Score = 284 bits (727), Expect = 6e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|NP_004219.3| cytohesin-2 isoform 2 [Homo sapiens].
Length = 399
Score = 284 bits (727), Expect = 6e-77
Identities = 144/145 (99%), Positives = 145/145 (100%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|NP_059430.2| cytohesin-1 isoform 2 [Homo sapiens].
Length = 397
Score = 217 bits (553), Expect = 1e-56
Identities = 105/144 (72%), Positives = 126/144 (87%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
ED Y P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
N+++AMGRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
N+ VLHAFV+LHEFTDLNLVQALR
Sbjct: 123 NIQVLHAFVELHEFTDLNLVQALR 146
>ref|NP_004753.1| cytohesin-1 isoform 1 [Homo sapiens].
Length = 398
Score = 217 bits (553), Expect = 1e-56
Identities = 105/144 (72%), Positives = 126/144 (87%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
ED Y P DLT EER ELENIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
N+++AMGRKKFNMDPKKGIQFL+E++LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
N+ VLHAFV+LHEFTDLNLVQALR
Sbjct: 123 NIQVLHAFVELHEFTDLNLVQALR 146
>ref|NP_004218.1| cytohesin-3 [Homo sapiens].
Length = 399
Score = 196 bits (499), Expect = 2e-50
Identities = 98/148 (66%), Positives = 125/148 (84%), Gaps = 4/148 (2%)
Frame = +1
Query: 181 EDGVYE----PPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSK 348
EDG E P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SK
Sbjct: 3 EDGGGEGGGVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESK 62
Query: 349 TLQRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGE 528
T QRN+++AMGRKKFNMDPKKGIQFL+E++LLQ++PE++A+FLYKGEGLNKT IGDYLGE
Sbjct: 63 TTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGE 122
Query: 529 REELNLAVLHAFVDLHEFTDLNLVQALR 612
R+E N+ VL AFV+LHEF DLNLVQALR
Sbjct: 123 RDEFNIKVLQAFVELHEFADLNLVQALR 150
>ref|NP_037517.1| cytohesin-4 [Homo sapiens].
Length = 394
Score = 157 bits (396), Expect = 2e-38
Identities = 74/139 (53%), Positives = 107/139 (76%)
Frame = +1
Query: 196 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 375
EP +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E+ E S+ Q+ +++
Sbjct: 7 EPAELSSGETEELQRIKWHRKQLLEDIQKLKDEIADVFAQIDCFESAEESRMAQKEKELC 66
Query: 376 MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 555
+GRKKFNMDP KGIQ+ +E +LL ++IARFLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPAKGIQYFIEHKLLTPDVQDIARFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 556 HAFVDLHEFTDLNLVQALR 612
AFVD HEF +LNLVQALR
Sbjct: 127 QAFVDCHEFANLNLVQALR 145
>ref|NP_006412.2| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Homo
sapiens].
Length = 1849
Score = 79.7 bits (195), Expect = 3e-15
Identities = 38/102 (37%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKG 486
+++ G + E + L++ +++ G FN PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 487 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALR 782
>ref|NP_006411.2| brefeldin A-inhibited guanine nucleotide-exchange protein 2 [Homo
sapiens].
Length = 1785
Score = 70.1 bits (170), Expect = 2e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = +1
Query: 355 QRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 534
Q+ + G + FN PK+GIQFL E +L + E+IA+FL++ E L+ T +GD+LG+
Sbjct: 642 QQKEIIEHGIELFNKKPKRGIQFLQEQGMLGTSVEDIAQFLHQEERLDSTQVGDFLGDSA 701
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
N V++A+VD +F + V ALR
Sbjct: 702 RFNKEVMYAYVDQLDFCEKEFVSALR 727
>ref|NP_056047.1| IQ motif and SEC7 domain-containing protein 3 isoform 2 [Homo
sapiens].
Length = 759
Score = 65.5 bits (158), Expect = 6e-11
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 34/217 (15%)
Frame = +1
Query: 64 AAVAPGAFERAHPSPRANADPGPTG---GTAPDS-PRAFLAAMEDGVYEPPDLTPEERME 231
A A G E+ S R + G +A DS A + DG P EE E
Sbjct: 217 AEPAAGKAEQGETSGREAPEAPAVGREDASAEDSCAEAAASGAADGATAPKTEEEEEEEE 276
Query: 232 LENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEG----------------------- 342
+ R + ++++L + S G EA+
Sbjct: 277 TAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGSEASASASKDALQAMILSLPRYHCENPAS 336
Query: 343 --SKTLQ----RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKT 504
S TL R R +G FN++P KGIQFL+ + +TP +A FL + +GL++
Sbjct: 337 CKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQ 396
Query: 505 AIGDYLG-EREELNLAVLHAFVDLHEFTDLNLVQALR 612
IG++LG +++ N VL VD +F+ + L +ALR
Sbjct: 397 MIGEFLGNSKKQFNRDVLDCVVDEMDFSSMELDEALR 433
>ref|NP_001164209.1| IQ motif and SEC7 domain-containing protein 3 isoform 1 [Homo
sapiens].
Length = 1182
Score = 65.5 bits (158), Expect = 6e-11
Identities = 59/217 (27%), Positives = 91/217 (41%), Gaps = 34/217 (15%)
Frame = +1
Query: 64 AAVAPGAFERAHPSPRANADPGPTG---GTAPDS-PRAFLAAMEDGVYEPPDLTPEERME 231
A A G E+ S R + G +A DS A + DG P EE E
Sbjct: 520 AEPAAGKAEQGETSGREAPEAPAVGREDASAEDSCAEAAASGAADGATAPKTEEEEEEEE 579
Query: 232 LENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEG----------------------- 342
+ R + ++++L + S G EA+
Sbjct: 580 TAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGSEASASASKDALQAMILSLPRYHCENPAS 639
Query: 343 --SKTLQ----RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKT 504
S TL R R +G FN++P KGIQFL+ + +TP +A FL + +GL++
Sbjct: 640 CKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQ 699
Query: 505 AIGDYLG-EREELNLAVLHAFVDLHEFTDLNLVQALR 612
IG++LG +++ N VL VD +F+ + L +ALR
Sbjct: 700 MIGEFLGNSKKQFNRDVLDCVVDEMDFSSMELDEALR 736
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,415,598
Number of extensions: 956024
Number of successful extensions: 5707
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 5620
Number of HSP's successfully gapped: 17
Length of query: 291
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 189
Effective length of database: 14,934,836
Effective search space: 2822684004
Effective search space used: 2822684004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035311.1| cytohesin-2 isoform 1 [Mus musculus]. 282 2e-76
Alignment gi|NP_001106171.1| cytohesin-2 isoform 2 [Mus musculus]. 282 2e-76
Alignment gi|NP_001106169.1| cytohesin-1 isoform 2 [Mus musculus]. 214 9e-56
Alignment gi|NP_035310.2| cytohesin-1 isoform 1 [Mus musculus]. 214 9e-56
Alignment gi|NP_001106170.1| cytohesin-1 isoform 3 [Mus musculus]. 212 3e-55
Alignment gi|NP_035312.3| cytohesin-3 isoform 1 [Mus musculus]. 195 3e-50
Alignment gi|NP_001157020.1| cytohesin-3 isoform 2 [Mus musculus]. 157 8e-39
Alignment gi|NP_082471.2| cytohesin-4 [Mus musculus]. 157 1e-38
Alignment gi|NP_001095900.1| brefeldin A-inhibited guanine nucleotide-exc... 80 3e-15
Alignment gi|NP_001078964.1| ADP-ribosylation factor guanine nucleotide-e... 67 1e-11
>ref|NP_035311.1| cytohesin-2 isoform 1 [Mus musculus].
Length = 400
Score = 282 bits (722), Expect = 2e-76
Identities = 143/145 (98%), Positives = 144/145 (99%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVEHELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNL+VLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLSVLHAFVDLHEFTDLNLVQALR 145
>ref|NP_001106171.1| cytohesin-2 isoform 2 [Mus musculus].
Length = 399
Score = 282 bits (722), Expect = 2e-76
Identities = 143/145 (98%), Positives = 144/145 (99%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVEHELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNL+VLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLSVLHAFVDLHEFTDLNLVQALR 145
>ref|NP_001106169.1| cytohesin-1 isoform 2 [Mus musculus].
Length = 397
Score = 214 bits (544), Expect = 9e-56
Identities = 104/144 (72%), Positives = 125/144 (86%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
+D Y P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 3 DDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 62
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
N+++AMGRKKFNMDPKKGIQFL+E+ LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
++ VLHAFV+LHEFTDLNLVQALR
Sbjct: 123 SIQVLHAFVELHEFTDLNLVQALR 146
>ref|NP_035310.2| cytohesin-1 isoform 1 [Mus musculus].
Length = 398
Score = 214 bits (544), Expect = 9e-56
Identities = 104/144 (72%), Positives = 125/144 (86%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
+D Y P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 3 DDDSYVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 62
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
N+++AMGRKKFNMDPKKGIQFL+E+ LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 63 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 122
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
++ VLHAFV+LHEFTDLNLVQALR
Sbjct: 123 SIQVLHAFVELHEFTDLNLVQALR 146
>ref|NP_001106170.1| cytohesin-1 isoform 3 [Mus musculus].
Length = 400
Score = 212 bits (540), Expect = 3e-55
Identities = 104/144 (72%), Positives = 125/144 (86%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
E+G P DLT EER ELENIRRRKQELL +IQRL+EE++E +E+E L + E K +QR
Sbjct: 5 EEGEDVPSDLTAEERQELENIRRRKQELLADIQRLKEEIAEVANEIESLGSTEERKNMQR 64
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
N+++AMGRKKFNMDPKKGIQFL+E+ LL+NT E+IA+FLYKGEGLNKTAIGDYLGER+E
Sbjct: 65 NKQVAMGRKKFNMDPKKGIQFLIENGLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEF 124
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
++ VLHAFV+LHEFTDLNLVQALR
Sbjct: 125 SIQVLHAFVELHEFTDLNLVQALR 148
>ref|NP_035312.3| cytohesin-3 isoform 1 [Mus musculus].
Length = 399
Score = 195 bits (496), Expect = 3e-50
Identities = 94/143 (65%), Positives = 123/143 (86%)
Frame = +1
Query: 184 DGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRN 363
+G P DL+ EER EL +IRRRK+EL+ +I+RL+ E++E M+E++ L + E SKT QRN
Sbjct: 8 EGGSVPEDLSLEEREELLDIRRRKKELIDDIERLKYEIAEVMTEIDNLTSVEESKTTQRN 67
Query: 364 RKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELN 543
+++AMGRKKFNMDPKKGIQFL+E++LLQ++PE++A+FLYKGEGLNKT IGDYLGER++ N
Sbjct: 68 KQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFN 127
Query: 544 LAVLHAFVDLHEFTDLNLVQALR 612
+ VL AFV+LHEF DLNLVQALR
Sbjct: 128 IKVLQAFVELHEFADLNLVQALR 150
>ref|NP_001157020.1| cytohesin-3 isoform 2 [Mus musculus].
Length = 351
Score = 157 bits (398), Expect = 8e-39
Identities = 73/102 (71%), Positives = 92/102 (90%)
Frame = +1
Query: 307 MSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKG 486
M+E++ L + E SKT QRN+++AMGRKKFNMDPKKGIQFL+E++LLQ++PE++A+FLYKG
Sbjct: 1 MTEIDNLTSVEESKTTQRNKQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKG 60
Query: 487 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
EGLNKT IGDYLGER++ N+ VL AFV+LHEF DLNLVQALR
Sbjct: 61 EGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADLNLVQALR 102
>ref|NP_082471.2| cytohesin-4 [Mus musculus].
Length = 393
Score = 157 bits (397), Expect = 1e-38
Identities = 72/139 (51%), Positives = 109/139 (78%)
Frame = +1
Query: 196 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 375
+P +L+ E EL+ I+ +++LL +IQ+L++E+++ ++++ E+ E S+ Q+ ++M
Sbjct: 7 DPAELSSGEAKELQQIKWHRKQLLEDIQKLKDEIADVFAQIDCFESTEESRMAQKEKEMC 66
Query: 376 MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 555
+GRKKFNMDP KGIQ+L+E +LL + ++IA+FLYKG+GLNKTAIG YLGE++ +NL VL
Sbjct: 67 IGRKKFNMDPNKGIQYLIEHKLLTSDVQDIAQFLYKGDGLNKTAIGTYLGEKDPINLQVL 126
Query: 556 HAFVDLHEFTDLNLVQALR 612
AFVD HEF +LNLVQALR
Sbjct: 127 QAFVDCHEFANLNLVQALR 145
>ref|NP_001095900.1| brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Mus
musculus].
Length = 1846
Score = 79.7 bits (195), Expect = 3e-15
Identities = 38/102 (37%), Positives = 68/102 (66%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKG 486
+++ G + E + L++ +++ G FN PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 678 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 737
Query: 487 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR
Sbjct: 738 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALR 779
>ref|NP_001078964.1| ADP-ribosylation factor guanine nucleotide-exchange factor 2
(brefeldin A-inhibited) [Mus musculus].
Length = 1792
Score = 67.4 bits (163), Expect = 1e-11
Identities = 34/86 (39%), Positives = 53/86 (61%)
Frame = +1
Query: 355 QRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE 534
Q+ + G + FN PK+GIQFL E +L E+IA+FL++ E L+ T +G++LG+
Sbjct: 649 QQKEIIEHGIELFNKKPKRGIQFLQEQGMLGAAVEDIAQFLHQEERLDSTQVGEFLGDST 708
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
N V++A+VD +F + V ALR
Sbjct: 709 RFNKEVMYAYVDQLDFCEKEFVSALR 734
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,129,993
Number of extensions: 785386
Number of successful extensions: 4662
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4583
Number of HSP's successfully gapped: 17
Length of query: 291
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 191
Effective length of database: 12,613,959
Effective search space: 2409266169
Effective search space used: 2409266169
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001137592.1| cytohesin-2 [Sus scrofa]. 281 3e-76
Alignment gi|XP_003131213.2| PREDICTED: cytohesin-1-like [Sus scrofa]. 207 8e-54
Alignment gi|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa]. 205 3e-53
Alignment gi|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa]. 205 3e-53
Alignment gi|XP_003355404.1| PREDICTED: hypothetical protein LOC100624216... 164 6e-41
Alignment gi|NP_001137593.1| cytohesin-4 [Sus scrofa]. 157 9e-39
Alignment gi|XP_001928045.1| PREDICTED: brefeldin A-inhibited guanine nuc... 77 1e-14
Alignment gi|XP_003358590.1| PREDICTED: IQ motif and SEC7 domain-containi... 65 6e-11
Alignment gi|XP_003135163.2| PREDICTED: IQ motif and SEC7 domain-containi... 64 1e-10
Alignment gi|XP_003126635.2| PREDICTED: IQ motif and SEC7 domain-containi... 62 3e-10
>ref|NP_001137592.1| cytohesin-2 [Sus scrofa].
Length = 399
Score = 281 bits (720), Expect = 3e-76
Identities = 143/145 (98%), Positives = 144/145 (99%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ
Sbjct: 1 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 60
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
RNRKMAMGRKKFNMDPKKGIQFLVE+EL QNTPEEIARFLYKGEGLNKTAIGDYLGEREE
Sbjct: 61 RNRKMAMGRKKFNMDPKKGIQFLVENELPQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 120
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
LNLAVLHAFVDLHEFTDLNLVQALR
Sbjct: 121 LNLAVLHAFVDLHEFTDLNLVQALR 145
>ref|XP_003131213.2| PREDICTED: cytohesin-1-like [Sus scrofa].
Length = 516
Score = 207 bits (526), Expect = 8e-54
Identities = 101/144 (70%), Positives = 123/144 (85%)
Frame = +1
Query: 181 EDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQR 360
ED Y P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +QR
Sbjct: 3 EDDSYVPSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQR 62
Query: 361 NRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREEL 540
++++AMGRKKFNMDPKKGIQFL+E++LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 63 SKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDEF 122
Query: 541 NLAVLHAFVDLHEFTDLNLVQALR 612
N+ VLHAFV LHEFTDLNLVQALR
Sbjct: 123 NIQVLHAFVGLHEFTDLNLVQALR 146
>ref|XP_003357994.1| PREDICTED: cytohesin-1 isoform 2 [Sus scrofa].
Length = 395
Score = 205 bits (521), Expect = 3e-53
Identities = 101/145 (69%), Positives = 125/145 (86%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
M+DG+ P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +Q
Sbjct: 1 MKDGI--PSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQ 58
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
R++++AMGRKKFNMDPKKGIQFL+E++LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 59 RSKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDE 118
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
N+ VLHAFV LHEFTDLNLVQALR
Sbjct: 119 FNIQVLHAFVGLHEFTDLNLVQALR 143
>ref|XP_003357993.1| PREDICTED: cytohesin-1 isoform 1 [Sus scrofa].
Length = 394
Score = 205 bits (521), Expect = 3e-53
Identities = 101/145 (69%), Positives = 125/145 (86%)
Frame = +1
Query: 178 MEDGVYEPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQ 357
M+DG+ P DLT EER EL NIRRRKQELL +IQRL++E++E +E+E L + E K +Q
Sbjct: 1 MKDGI--PSDLTAEERQELGNIRRRKQELLADIQRLKDEIAEVANEIENLGSTEERKNMQ 58
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREE 537
R++++AMGRKKFNMDPKKGIQFL+E++LL+NT E+IA+FL +GEGLNKTAIGDYLGER+E
Sbjct: 59 RSKQVAMGRKKFNMDPKKGIQFLIENDLLKNTCEDIAQFLCRGEGLNKTAIGDYLGERDE 118
Query: 538 LNLAVLHAFVDLHEFTDLNLVQALR 612
N+ VLHAFV LHEFTDLNLVQALR
Sbjct: 119 FNIQVLHAFVGLHEFTDLNLVQALR 143
>ref|XP_003355404.1| PREDICTED: hypothetical protein LOC100624216 [Sus scrofa].
Length = 953
Score = 164 bits (415), Expect = 6e-41
Identities = 83/179 (46%), Positives = 118/179 (65%)
Frame = +1
Query: 76 PGAFERAHPSPRANADPGPTGGTAPDSPRAFLAAMEDGVYEPPDLTPEERMELENIRRRK 255
P F + P D G PD PR +P +L+ E EL+ I+ +
Sbjct: 534 PHVFRKGREQPPPTGDAPAGGRPPPDHPRC---------PDPGELSSGETEELQRIKWHR 584
Query: 256 QELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMAMGRKKFNMDPKKGIQFLVED 435
++LL +IQ+L+EE+++ ++++ E E S+ Q+ +++++GRKKFNMDP KGIQ+L+E
Sbjct: 585 KQLLEDIQKLKEEIADVFAQIDCFETAEESRVAQKEKELSIGRKKFNMDPVKGIQYLIEH 644
Query: 436 ELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
+LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL AFVD HEF +LNLVQALR
Sbjct: 645 KLLSPDVQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVLQAFVDCHEFANLNLVQALR 703
>ref|NP_001137593.1| cytohesin-4 [Sus scrofa].
Length = 394
Score = 157 bits (396), Expect = 9e-39
Identities = 74/139 (53%), Positives = 108/139 (77%)
Frame = +1
Query: 196 EPPDLTPEERMELENIRRRKQELLVEIQRLREELSEAMSEVEGLEANEGSKTLQRNRKMA 375
+P +L+ E EL+ I+ +++LL +IQ+L+EE+++ ++++ E E S+ Q+ ++++
Sbjct: 7 DPGELSSGETEELQRIKWHRKQLLEDIQKLKEEIADVFAQIDCFETAEESRVAQKEKELS 66
Query: 376 MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVL 555
+GRKKFNMDP KGIQ+L+E +LL ++IA+FLYKGEGLNKTAIG YLGER+ +NL VL
Sbjct: 67 IGRKKFNMDPVKGIQYLIEHKLLSPDVQDIAQFLYKGEGLNKTAIGTYLGERDPINLQVL 126
Query: 556 HAFVDLHEFTDLNLVQALR 612
AFVD HEF +LNLVQALR
Sbjct: 127 QAFVDCHEFANLNLVQALR 145
>ref|XP_001928045.1| PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange
protein 1 [Sus scrofa].
Length = 1849
Score = 77.4 bits (189), Expect = 1e-14
Identities = 37/102 (36%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Frame = +1
Query: 310 SEVEGLEANEGSKTLQRNRKMA-MGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKG 486
+++ G + E + L++ +++ G F PK+GIQ+L E +L TPE+IA+FL++
Sbjct: 681 TQMSGTDNPEQFEVLKQQKEIIEQGIDLFTKKPKRGIQYLQEQGMLGTTPEDIAQFLHQE 740
Query: 487 EGLNKTAIGDYLGEREELNLAVLHAFVDLHEFTDLNLVQALR 612
E L+ T +G++LG+ ++ N V++A+VD H+F+ + V ALR
Sbjct: 741 ERLDSTQVGEFLGDNDKFNKEVMYAYVDQHDFSGKDFVSALR 782
>ref|XP_003358590.1| PREDICTED: IQ motif and SEC7 domain-containing protein 1, partial
[Sus scrofa].
Length = 1108
Score = 64.7 bits (156), Expect = 6e-11
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = +1
Query: 343 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYL 522
S + R R +G FN P+KGIQ+L+E + +TP +A FL + +GL++ IG++L
Sbjct: 496 SNDVIRKRHYRIGLNLFNKKPEKGIQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFL 555
Query: 523 GERE-ELNLAVLHAFVDLHEFTDLNLVQALR 612
G R+ + N VL VD +F+ + L +ALR
Sbjct: 556 GNRQKQFNRDVLDCVVDEMDFSAMELDEALR 586
>ref|XP_003135163.2| PREDICTED: IQ motif and SEC7 domain-containing protein 2 [Sus
scrofa].
Length = 1283
Score = 63.9 bits (154), Expect = 1e-10
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLGERE- 534
+ R +G FN P+KGIQ+L+E L +TP +A F+ + +GL++ IG++LG R+
Sbjct: 548 QRRHYRIGLNLFNKKPEKGIQYLIERGFLSDTPVGVAHFILERKGLSRQMIGEFLGNRQK 607
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
+ N VL VD +F+ ++L ALR
Sbjct: 608 QFNRDVLDCVVDEMDFSSMDLDDALR 633
>ref|XP_003126635.2| PREDICTED: IQ motif and SEC7 domain-containing protein 3 [Sus
scrofa].
Length = 773
Score = 62.4 bits (150), Expect = 3e-10
Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 358 RNRKMAMGRKKFNMDPKKGIQFLVEDELLQNTPEEIARFLYKGEGLNKTAIGDYLG-ERE 534
R R +G FN++P KGIQFL+ + +TP +A FL + +GL++ IG++LG ++
Sbjct: 362 RKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKK 421
Query: 535 ELNLAVLHAFVDLHEFTDLNLVQALR 612
+ N VL VD +F+ + L +ALR
Sbjct: 422 QFNRDVLDCVVDEMDFSAMELDEALR 447
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,461,786
Number of extensions: 775226
Number of successful extensions: 3899
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3838
Number of HSP's successfully gapped: 12
Length of query: 291
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 193
Effective length of database: 8,904,026
Effective search space: 1718477018
Effective search space used: 1718477018
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002754
(873 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 525 e-146
Sscrofa_Chr12 66 3e-08
gb|GL894906.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 58 8e-06
>Sscrofa_Chr06
|| Length = 157765593
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Minus
Query: 529 agggaagagttgaacctggcagtgctccatgcctttgtggatctgcacgagttcaccgac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49545298 agggaagagttgaacctggcagtgctccatgcctttgtggatctgcacgagttcaccgac 49545239
Query: 589 ctcaatctggtgcaggccctcaggtgaggagggcagggttggaagggcaggaaggtccct 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49545238 ctcaatctggtgcaggccctcaggtgaggagggcagggttggaagggcaggaaggtccct 49545179
Query: 649 gttggcttgctctacaagcaatgacccctactcaaaacaaaaatggccacgaaaagtagg 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49545178 gttggcttgctctacaagcaatgacccctactcaaaacaaaaatggccacgaaaagtagg 49545119
Query: 709 gaatggattgcctcacgtgactccagagtccacggtagggcctccttcaggcatagctgt 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49545118 gaatggattgcctcacgtgactccagagtccacggtagggcctccttcaggcatagctgt 49545059
Query: 769 atccaggtgttcagaagatgatgaa 793
|||||||||||||||||||||||||
Sbjct: 49545058 atccaggtgttcagaagatgatgaa 49545034
Score = 381 bits (192), Expect = e-103
Identities = 195/196 (99%)
Strand = Plus / Minus
Query: 1 ctggcggggcggttgggagacgaagggagagttttttcagcgctgaggactggcgctgag 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 49549472 ctggcggggcggttgggagacgaagggagagtcttttcagcgctgaggactggcgctgag 49549413
Query: 61 gaggcggcggtggctcccggggcgtttgagcgggctcacccgagcccgcgggccaacgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49549412 gaggcggcggtggctcccggggcgtttgagcgggctcacccgagcccgcgggccaacgcg 49549353
Query: 121 gatccaggcccgaccggcgggaccgccccggactccccgcgggccttcctagccgccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49549352 gatccaggcccgaccggcgggaccgccccggactccccgcgggccttcctagccgccatg 49549293
Query: 181 gaggacggtgtctacg 196
||||||||||||||||
Sbjct: 49549292 gaggacggtgtctacg 49549277
Score = 295 bits (149), Expect = 2e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 196 gagcccccggacctgactcccgaggagcggatggagctggagaacatccggcggcggaag 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548432 gagcccccggacctgactcccgaggagcggatggagctggagaacatccggcggcggaag 49548373
Query: 256 caggagctgctggtggagatccagcgcctgcgggaggagctcagcgaagccatgagcgaa 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548372 caggagctgctggtggagatccagcgcctgcgggaggagctcagcgaagccatgagcgaa 49548313
Query: 316 gtcgaggggctggaggccaatgagggcag 344
|||||||||||||||||||||||||||||
Sbjct: 49548312 gtcgaggggctggaggccaatgagggcag 49548284
Score = 234 bits (118), Expect = 7e-59
Identities = 121/122 (99%)
Strand = Plus / Minus
Query: 410 aggggatccagttcctggtggaggatgaacttctacagaacacccccgaggagatcgccc 469
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 49546597 aggggatccagttcctggtggagaatgaacttctacagaacacccccgaggagatcgccc 49546538
Query: 470 gcttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctgggggaga 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49546537 gcttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctgggggaga 49546478
Query: 530 gg 531
||
Sbjct: 49546477 gg 49546476
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 341 gcagcaagaccttgcagcggaaccggaagatggcaatgggcaggaagaagttcaacatgg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49548189 gcagcaagaccttgcagcggaaccggaagatggcaatgggcaggaagaagttcaacatgg 49548130
Query: 401 accccaaaaagg 412
||||||||||||
Sbjct: 49548129 accccaaaaagg 49548118
>Sscrofa_Chr12
|| Length = 63588571
Score = 65.9 bits (33), Expect = 3e-08
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 228 ggagctggagaacatccggcggcggaagcaggagctgctgg 268
|||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 3451435 ggagctggggaacatccggcggaggaagcaggagctgctgg 3451475
Score = 63.9 bits (32), Expect = 1e-07
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 457 gaggagatcgcccgcttcctgtacaagggcgaaggcctgaacaagacggccatcggggac 516
||||| ||||||| ||||||| || || ||||| || ||||||||||||||||| |||
Sbjct: 3455586 gaggacatcgcccagttcctgtgcagaggagaagggctcaacaagacggccatcggcgac 3455645
Query: 517 tacctgggggag 528
||||||||||||
Sbjct: 3455646 tacctgggggag 3455657
>gb|GL894906.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3524
Length = 31341
Score = 58.0 bits (29), Expect = 8e-06
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 472 ttcctgtacaagggcgaaggcctgaacaagacggccatcggggactacctggg 524
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Sbjct: 16022 ttcctgtataaaggcgaaggcctgaataagacggtgatcggggactatctggg 15970
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,660,971
Number of extensions: 201
Number of successful extensions: 201
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 8
Length of query: 873
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 852
Effective length of database: 2,808,413,156
Effective search space: 2392768008912
Effective search space used: 2392768008912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)