Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033213.1| DNA-directed RNA polymerases I and III subun... 654 0.0
Alignment gi|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 ... 100 3e-21
>ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus].
Length = 346
Score = 654 bits (1687), Expect = 0.0
Identities = 326/338 (96%), Positives = 331/338 (97%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAVEEMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVEEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GDE GTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNH+VYTRHMTWVPLGN
Sbjct: 121 LFEYRNQGDEGGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEG IRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGAIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEG+AAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRN+KLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNEKLKKVVRLA 300
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDH+IFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 301 RVRDHFIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLD 338
>ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus].
Length = 275
Score = 100 bits (248), Expect = 3e-21
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GLIPIHAD---PRLFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 549
GLIP+ +D +L R+ EE +++F L VRC + + S D +++
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124
Query: 550 VYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSP 729
+T N + + E DDILI +LR GQE+ L KG GK+HAK++P
Sbjct: 125 PRVIPVTSRNRDNDPNDYVE------QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 730 VATASYRLLPDITLLEPV 783
A ++ PD L V
Sbjct: 179 TAGVAFEYDPDNALRHTV 196
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,306,300
Number of extensions: 1407334
Number of successful extensions: 5112
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5079
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532147.1| PREDICTED: similar to DNA-directed RNA polymera... 656 0.0
Alignment gi|XP_865706.1| PREDICTED: similar to DNA-directed RNA polymera... 634 0.0
Alignment gi|XP_865721.1| PREDICTED: similar to DNA-directed RNA polymera... 610 e-175
Alignment gi|XP_865690.1| PREDICTED: similar to DNA-directed RNA polymera... 535 e-152
Alignment gi|XP_865641.1| PREDICTED: similar to DNA-directed RNA polymera... 533 e-151
Alignment gi|XP_865661.1| PREDICTED: similar to DNA-directed RNA polymera... 254 1e-67
Alignment gi|XP_535283.2| PREDICTED: similar to polymerase (RNA) II (DNA ... 100 3e-21
Alignment gi|XP_862568.1| PREDICTED: similar to DNA directed RNA polymera... 57 4e-08
>ref|XP_532147.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 1 [Canis familiaris].
Length = 346
Score = 656 bits (1693), Expect = 0.0
Identities = 326/338 (96%), Positives = 332/338 (98%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GD+EGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVY+RHMTWVPLGN
Sbjct: 121 LFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEGDAAEELSRCFSPGVIEVQE+QGKKVARVANPRLDTFSREVFR +KLKKVVRLA
Sbjct: 241 LLEPVEGDAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREVFRKEKLKKVVRLA 300
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 301 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 338
>ref|XP_865706.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 5 [Canis familiaris].
Length = 338
Score = 634 bits (1636), Expect = 0.0
Identities = 319/338 (94%), Positives = 324/338 (95%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GD+EGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVY+RHMTWVPLGN
Sbjct: 121 LFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEGDAAEELSRCFSPGVIE VARVANPRLDTFSREVFR +KLKKVVRLA
Sbjct: 241 LLEPVEGDAAEELSRCFSPGVIE--------VARVANPRLDTFSREVFRKEKLKKVVRLA 292
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 293 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 330
>ref|XP_865721.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 6 [Canis familiaris].
Length = 328
Score = 610 bits (1574), Expect = e-175
Identities = 308/338 (91%), Positives = 314/338 (92%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GD+EGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVY+RHMTWVPLGN
Sbjct: 121 LFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEGDAAEELSRCFSPGVIEVQE+Q VFR +KLKKVVRLA
Sbjct: 241 LLEPVEGDAAEELSRCFSPGVIEVQEVQ------------------VFRKEKLKKVVRLA 282
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 283 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 320
>ref|XP_865690.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 4 [Canis familiaris].
Length = 296
Score = 535 bits (1379), Expect = e-152
Identities = 277/338 (81%), Positives = 282/338 (83%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GD+EGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVY+RHMTWVPLGN
Sbjct: 121 LFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGK
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGK-------------------- 220
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
KVARVANPRLDTFSREVFR +KLKKVVRLA
Sbjct: 221 ------------------------------KVARVANPRLDTFSREVFRKEKLKKVVRLA 250
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 251 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 288
>ref|XP_865641.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 2 [Canis
familiaris].
Length = 281
Score = 533 bits (1372), Expect = e-151
Identities = 261/270 (96%), Positives = 267/270 (98%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GD+EGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVY+RHMTWVPLGN
Sbjct: 121 LFEYRNQGDDEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGK 858
LLEPVEGDAAEELSRCFSPGVIEVQE+QG+
Sbjct: 241 LLEPVEGDAAEELSRCFSPGVIEVQEVQGR 270
>ref|XP_865661.1| PREDICTED: similar to DNA-directed RNA polymerase I 40 kDa
polypeptide (RPA40) (RPA39) isoform 3 [Canis
familiaris].
Length = 144
Score = 254 bits (648), Expect = 1e-67
Identities = 125/128 (97%), Positives = 127/128 (99%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAV+EMR+RVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAAAQAVQEMRTRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPG 432
LFEYRN G
Sbjct: 121 LFEYRNQG 128
>ref|XP_535283.2| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C (predicted) isoform 1 [Canis familiaris].
Length = 275
Score = 100 bits (248), Expect = 3e-21
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GLIPIHAD---PRLFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 549
GLIP+ +D +L R+ EE +++F L VRC + + S D +++
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124
Query: 550 VYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSP 729
+T N + + E DDILI +LR GQE+ L KG GK+HAK++P
Sbjct: 125 PRVIPVTSRNRDNDPNDYVE------QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 730 VATASYRLLPDITLLEPV 783
A ++ PD L V
Sbjct: 179 TAGVAFEYDPDNALRHTV 196
>ref|XP_862568.1| PREDICTED: similar to DNA directed RNA polymerase II polypeptide C
isoform 2 [Canis familiaris].
Length = 72
Score = 56.6 bits (135), Expect = 4e-08
Identities = 24/62 (38%), Positives = 43/62 (69%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GL 384
GL
Sbjct: 69 GL 70
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,163,046
Number of extensions: 1444742
Number of successful extensions: 5224
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5198
Number of HSP's successfully gapped: 9
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976035.1| DNA-directed RNA polymerases I and III subunit ... 660 0.0
Alignment gi|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Ho... 100 4e-21
>ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens].
Length = 346
Score = 660 bits (1703), Expect = 0.0
Identities = 327/338 (96%), Positives = 333/338 (98%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAA+QAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS
Sbjct: 1 MAASQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN GDEEGTEIDTLQFRLQVRCTRNP AAKDSSDPNELYVNHKVYTRHMTW+PLGN
Sbjct: 121 LFEYRNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QADLFPEGTIRPVHDDILIAQLRPGQEIDLLM CVKGIGKDHAKFSPVATASYRLLPDIT
Sbjct: 181 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEG+AAEELSRCFSPGVIEVQE+QGKKVARVANPRLDTFSRE+FRN+KLKKVVRLA
Sbjct: 241 LLEPVEGEAAEELSRCFSPGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLA 300
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIKVLMG C RFLD
Sbjct: 301 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLD 338
>ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens].
Length = 275
Score = 99.8 bits (247), Expect = 4e-21
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GLIPIHAD---PRLFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 549
GLIP+ +D +L R+ EE +++F L VRC + + S D +++
Sbjct: 69 GLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124
Query: 550 VYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSP 729
+T N + + E DDILI +LR GQE+ L KG GK+HAK++P
Sbjct: 125 PRVIPVTSRNRDNDPNDYVE------QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 730 VATASYRLLPDITLLEPV 783
A ++ PD L V
Sbjct: 179 TAGVAFEYDPDNALRHTV 196
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,366,277
Number of extensions: 1418407
Number of successful extensions: 4879
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4862
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033111.2| DNA-directed RNA polymerases I and III subunit ... 632 0.0
Alignment gi|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mu... 101 1e-21
>ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus].
Length = 346
Score = 632 bits (1629), Expect = 0.0
Identities = 312/338 (92%), Positives = 329/338 (97%)
Frame = +1
Query: 49 MAAAQAVEEMRSRVVLGEFGVRNVHTTDFPGNYSGYDDAWDQDRFEKNFRVDVVHMDENS 228
MAAAQAVEEMR+RVVLGEFGVRNVHTTDFPGNY+GYDDAWDQ+RFEKNFRVDVV MDE++
Sbjct: 1 MAAAQAVEEMRTRVVLGEFGVRNVHTTDFPGNYAGYDDAWDQNRFEKNFRVDVVQMDEDT 60
Query: 229 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPR 408
LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPI ADPR
Sbjct: 61 LEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPR 120
Query: 409 LFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGN 588
LFEYRN G+EEGTEIDTLQFRLQVRCTRNP+AAKDSSDPNELYVNHKVYTRHMTWVPLGN
Sbjct: 121 LFEYRNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGN 180
Query: 589 QADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDIT 768
QAD+FPEGTIRPVHDDILIAQLRPGQEIDL+M CVKGIGKDHAKFSPVATASYRLLP IT
Sbjct: 181 QADVFPEGTIRPVHDDILIAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAIT 240
Query: 769 LLEPVEGDAAEELSRCFSPGVIEVQEIQGKKVARVANPRLDTFSREVFRNDKLKKVVRLA 948
LLEPVEG+AAEELS+CFSPGVIEV+E+QGKKVARVAN RLDTFSRE+FR++KLKK VRLA
Sbjct: 241 LLEPVEGEAAEELSQCFSPGVIEVEEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLA 300
Query: 949 RVRDHYIFSVESTGVLPPDVLVSEAIKVLMGSCGRFLD 1062
RVRDHYIFSVESTGVLPPDVLVSEAIK+LMG C RFLD
Sbjct: 301 RVRDHYIFSVESTGVLPPDVLVSEAIKILMGKCRRFLD 338
>ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus].
Length = 275
Score = 101 bits (251), Expect = 1e-21
Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + E +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GLIPIHAD---PRLFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 549
GLIP+ +D +L R+ EE +++F L VRC + + S D +++
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124
Query: 550 VYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFSP 729
+T N + + E DDILI +LR GQE+ L KG GK+HAK++P
Sbjct: 125 PRVIPVTSRNRDNDPNDYVE------QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 178
Query: 730 VATASYRLLPDITLLEPV 783
A ++ PD L V
Sbjct: 179 TAGVAFEYDPDNALRHTV 196
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,250,365
Number of extensions: 1184718
Number of successful extensions: 3925
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3899
Number of HSP's successfully gapped: 2
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II su... 100 2e-21
>ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa].
Length = 275
Score = 100 bits (248), Expect = 2e-21
Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 4/199 (2%)
Frame = +1
Query: 199 VDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRL 378
V + + + +++F + D A+AN+ RR+ +AEVP +A++ V + N+S++ DE +AHRL
Sbjct: 9 VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68
Query: 379 GLIPIHAD---PRLFEYRNPGDEEGTEIDTLQFRLQVRCTRNPSAAKDSSDPNELYVNHK 549
GLIP+ +D +L R+ EE +++F L VRC + + S D
Sbjct: 69 GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD--------- 119
Query: 550 VYTRHMTWVPL-GNQADLFPEGTIRPVHDDILIAQLRPGQEIDLLMQCVKGIGKDHAKFS 726
+ + +P+ D P + DDILI +LR GQE+ L KG GK+HAK++
Sbjct: 120 LISNSPRVIPVTSRNRDNDPSDYVE--QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 177
Query: 727 PVATASYRLLPDITLLEPV 783
P A ++ PD L V
Sbjct: 178 PTAGVAFEYDPDNALRHTV 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,189,373
Number of extensions: 904824
Number of successful extensions: 3175
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3161
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002755
(1063 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 309 2e-81
>Sscrofa_Chr07
|| Length = 134764511
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 549 agtgtacaccaggcacatgacttgggtgcccctggggaaccaggctgatctcttcccgga 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110698 agtgtacaccaggcacatgacttgggtgcccctggggaaccaggctgatctcttcccgga 44110757
Query: 609 gggcaccatccgccccgtgcacgacgacatcctcattgctcagctgcggcctggccagga 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110758 gggcaccatccgccccgtgcacgacgacatcctcattgctcagctgcggcctggccagga 44110817
Query: 669 gattgacctgctcatgcagtgtgtcaagggcattgg 704
||||||||||||||||||||||||||||||||||||
Sbjct: 44110818 gattgacctgctcatgcagtgtgtcaagggcattgg 44110853
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 703 ggcaaagatcatgccaagttttcacctgtggcaacagccagctacaggcttctgccagac 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44111007 ggcaaagatcatgccaagttttcacctgtggcaacagccagctacaggcttctgccagac 44111066
Query: 763 attaccctgcttgagcctgtggaaggggacgcagccgaggagctgagccggtgcttctca 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44111067 attaccctgcttgagcctgtggaaggggacgcagccgaggagctgagccggtgcttctca 44111126
Query: 823 cctggtgtcatcgaggtgcaggaaatccaaggta 856
||||||||||||||||||||||||||||||||||
Sbjct: 44111127 cctggtgtcatcgaggtgcaggaaatccaaggta 44111160
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Plus
Query: 296 aggtgccaaccatggctgtggagaaggtcctggtgtacaacaacacgtccattgtccagg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110108 aggtgccaaccatggctgtggagaaggtcctggtgtacaacaacacgtccattgtccagg 44110167
Query: 356 atgagatcctcgctcaccgcttgggactcatccccattcatgctgatccccgtctttttg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110168 atgagatcctcgctcaccgcttgggactcatccccattcatgctgatccccgtctttttg 44110227
Query: 416 agtatcggaacc 427
||||||||||||
Sbjct: 44110228 agtatcggaacc 44110239
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 430 ggggatgaagaaggcacagaaatagataccctgcagtttcggctgcaggtcaggtgcact 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110494 ggggatgaagaaggcacagaaatagataccctgcagtttcggctgcaggtcaggtgcact 44110553
Query: 490 cggaaccccagtgctgcaaaagattcctctgaccccaatgagctctatgtcaaccacaaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44110554 cggaaccccagtgctgcaaaagattcctctgaccccaatgagctctatgtcaaccacaaa 44110613
Query: 550 g 550
|
Sbjct: 44110614 g 44110614
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 agaacgcacgcgcaggcttggtactctagtcacatggtggagttgaagatggcggcggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44092606 agaacgcacgcgcaggcttggtactctagtcacatggtggagttgaagatggcggcggct 44092665
Query: 61 caggctgtggaggaaatgcggagccgcgtggttctaggggagttcggggttcgcaatgt 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44092666 caggctgtggaggaaatgcggagccgcgtggttctaggggagttcggggttcgcaatgt 44092724
Score = 228 bits (115), Expect = 5e-57
Identities = 118/119 (99%)
Strand = Plus / Plus
Query: 852 aggtaaaaaggtggccagagttgccaatccccggctggataccttcagcagggaagtctt 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44111276 aggtaaaaaggtggccagagttgccaatccccggctggataccttcagcagggaagtctt 44111335
Query: 912 ccggaatgacaagctgaagaaggtcgtgcggctcgctcgcgttcgggaccattatatct 970
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44111336 ccggaatgacatgctgaagaaggtcgtgcggctcgctcgcgttcgggaccattatatct 44111394
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 188 agaatttccgtgtggatgtggtacacatggatgaaaactctctggagttcgacatggtgg 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44109756 agaatttccgtgtggatgtggtacacatggatgaaaactctctggagttcgacatggtgg 44109815
Query: 248 gaattgacgcagccattgccaatgcttttcgccgcatcctcttagctgaggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44109816 gaattgacgcagccattgccaatgcttttcgccgcatcctcttagctgaggt 44109867
Score = 161 bits (81), Expect = 1e-36
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 971 tctctgttgagtcaacaggggtgttgccgccagatgtgctggtgagcgaagccatcaagg 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44111526 tctctgttgagtcaacaggggtgttgccgccagatgtgctggtgagcgaagccatcaagg 44111585
Query: 1031 tactgatggggagttgcgggcggttcctggatg 1063
|||||||||||| ||| |||||||||||||||
Sbjct: 44111586 tactgatggggaagtgccggcggttcctggatg 44111618
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 118 gttcatactaccgattttcccggtaactattcgggctatgatgatgcctgggaccaggac 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44092849 gttcatactaccgattttcccggtaactattcgggctatgatgatgcctgggaccaggac 44092908
Query: 178 cgcttcgagaag 189
||||||||||||
Sbjct: 44092909 cgcttcgagaag 44092920
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,002,650
Number of extensions: 109
Number of successful extensions: 109
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 9
Length of query: 1063
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1042
Effective length of database: 2,808,413,156
Effective search space: 2926366508552
Effective search space used: 2926366508552
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)