Animal-Genome cDNA 20110601C-002773


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|YP_209215.1| NADH dehydrogenase subunit 5 [Bos taurus].           627   e-180

>ref|YP_209215.1| NADH dehydrogenase subunit 5 [Bos taurus].
          Length = 606

 Score =  627 bits (1617), Expect = e-180
 Identities = 324/460 (70%), Positives = 374/460 (81%)
 Frame = +2

Query: 107  NIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFKIDY 286
            N YK + YP YVKT +SYAF  S++P ++FIH+GQE+IISN H +T+QT++LSLSFK+DY
Sbjct: 25   NTYKPSNYPLYVKTAISYAFITSMIPTMMFIHSGQELIISNWHWLTIQTLKLSLSFKMDY 84

Query: 287  FSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLFIG* 466
            FS++FIPVALFVT SI+EFS+ Y++SDP IN+FFKY           VTANNLFQLFIG 
Sbjct: 85   FSMMFIPVALFVTWSIMEFSMWYMYSDPNINKFFKYLLLFLITMLILVTANNLFQLFIGW 144

Query: 467  EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQIFIL 646
            EGVGI+SFLLIG  +GR DANTAALQAILYNRIGDIGF+L++A FLT+ N  DLQQIF+L
Sbjct: 145  EGVGIMSFLLIGWWYGRADANTAALQAILYNRIGDIGFILAMAWFLTNLNTWDLQQIFML 204

Query: 647  NNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFY 826
            N    N+PLIG      GKSAQFGLHP LPSA+EGPTPVSALLHSST+VVAG+FLLIRFY
Sbjct: 205  NPSDSNMPLIGLALAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFY 264

Query: 827  PLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHL 1006
            PL E NK +Q+ITLCLGAITTLFTA+CA+TQNDIKKI+AFSTSSQLGL++VTIGINQP+L
Sbjct: 265  PLTENNKYIQSITLCLGAITTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVTIGINQPYL 324

Query: 1007 AFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMP 1186
            AFLHIC HAFFKA+LF+CSGSIIHSLNDEQDIRK+GGL+KA+PFTTTALI+GSLALTGMP
Sbjct: 325  AFLHICTHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLFKAMPFTTTALIVGSLALTGMP 384

Query: 1187 YLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLVLIN 1366
            +LTGFYSKDLIIEA N S                      RIIFFA LG+PRFP LV IN
Sbjct: 385  FLTGFYSKDLIIEAANTSYTNAWALLMTLIATSFTAIYSTRIIFFALLGQPRFPTLVNIN 444

Query: 1367 ENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTXTYPF 1486
            ENNPLLINSIKRLLIGS+FAG+IIS           T P+
Sbjct: 445  ENNPLLINSIKRLLIGSLFAGYIISNNIPPTTIPQMTMPY 484



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +1

Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
            +NIPP T+P   +P Y+K TALIVTI+GFILALE++
Sbjct: 470  NNIPPTTIPQMTMPYYLKTTALIVTILGFILALEIS 505


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,087,392
Number of extensions: 1026885
Number of successful extensions: 2606
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2602
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,140,958
Effective search space: 5953343318
Effective search space used: 5953343318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_008481.4| NADH dehydrogenase subunit 5 [Canis lupus famil...   625   0.0  
Alignment   gi|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus famil...    55   2e-07

>ref|NP_008481.4| NADH dehydrogenase subunit 5 [Canis lupus familiaris].
          Length = 606

 Score =  625 bits (1611), Expect(2) = 0.0
 Identities = 316/469 (67%), Positives = 380/469 (81%)
 Frame = +2

Query: 35   INPFASXXXXXXXXXXXXXXXSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQE 214
            +N F+S               S++ +YK  LYP YVKT  SYAF +S++P ++FI++GQE
Sbjct: 1    MNMFSSCMITALVILTLPIIMSSTKLYKNKLYPYYVKTATSYAFMISMIPTMMFIYSGQE 60

Query: 215  IIISN*H*ITLQTVELSLSFKIDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKY 394
             IISN H +T+QT++LS+SFK+DYFS+IF+PVALFVT SI+EFS+ Y+HSDP+INRFFKY
Sbjct: 61   TIISNWHWMTIQTMKLSMSFKLDYFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFKY 120

Query: 395  XXXXXXXXXXXVTANNLFQLFIG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDI 574
                       VTANN+FQLFIG EGVGI+SFLLIG  +GRTDANTAALQA+LYNRIGD+
Sbjct: 121  LLLFLITMMVLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAVLYNRIGDV 180

Query: 575  GFVLSIA*FLTHSNA*DLQQIFILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGP 754
            GF++++A FL + N  DLQQIFI  N+  N+PL+G      GKSAQFGLHP LPSA+EGP
Sbjct: 181  GFIMTMAWFLLNLNTWDLQQIFITTNDNFNLPLLGLLLAATGKSAQFGLHPWLPSAMEGP 240

Query: 755  TPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKK 934
            TPVSALLHSST+VVAGVFLLIRF+PL+E N+ +QT+TLCLGAITTLFTA+CA+TQNDIKK
Sbjct: 241  TPVSALLHSSTMVVAGVFLLIRFHPLMEHNQTIQTLTLCLGAITTLFTAICALTQNDIKK 300

Query: 935  IVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIG 1114
            IVAFSTSSQLGL++VTIGINQP+LAFLHIC HAFFKA+LF+CSGS+IHSLNDEQDIRK+G
Sbjct: 301  IVAFSTSSQLGLMMVTIGINQPYLAFLHICTHAFFKAMLFMCSGSVIHSLNDEQDIRKMG 360

Query: 1115 GLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXX 1294
            GL+K +PFTTT+LIIGSLALTGMP+LTGFYSKDLIIE+ N S                  
Sbjct: 361  GLFKVLPFTTTSLIIGSLALTGMPFLTGFYSKDLIIESANTSNTNAWALLITLVATSLTA 420

Query: 1295 XXXXRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIIS 1441
                RI+FFA LG+PRF P++LINENNPLLINSIKRLLIGS+FAG+IIS
Sbjct: 421  AYSTRIMFFALLGQPRFSPMILINENNPLLINSIKRLLIGSVFAGYIIS 469



 Score = 48.9 bits (115), Expect(2) = 0.0
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +1

Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
            H+I P T+P   +P Y+K+TAL VT +GFILALELN
Sbjct: 470  HSITPTTIPQMTMPHYLKMTALAVTTLGFILALELN 505


>ref|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus familiaris].
          Length = 347

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 40/165 (24%), Positives = 80/165 (48%)
 Frame = +2

Query: 731  LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCA 910
            +P   +G T +S ++  +   +A + +L +  P I TN L     + +   + L      
Sbjct: 115  VPEVTQGITLMSGMILLTWQKIAPMSILYQISPSINTNLL-----MLMALTSVLVGGWGG 169

Query: 911  ITQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLND 1090
            + Q  ++KI+A+S+ + +G +   I  N P +  L++ ++     IL   S  ++  LN 
Sbjct: 170  LNQTQLRKIMAYSSIAHMGWMAAIITYN-PTMMVLNLTLY-----ILMTLSTFMLFMLNS 223

Query: 1091 EQDIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIE 1225
                  +  ++   P  T+ ++I  L+L G+P L+GF  K +II+
Sbjct: 224  STTTLSLSHMWNKFPLITSMILILMLSLGGLPPLSGFIPKWMIIQ 268


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,283,200
Number of extensions: 1068529
Number of successful extensions: 2716
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2711
Number of HSP's successfully gapped: 3
Length of query: 528
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 421
Effective length of database: 15,307,552
Effective search space: 6444479392
Effective search space used: 6444479392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|YP_003024036.1| NADH dehydrogenase subunit 5 [Homo sapiens].      548   e-161

>ref|YP_003024036.1| NADH dehydrogenase subunit 5 [Homo sapiens].
          Length = 603

 Score =  548 bits (1413), Expect(2) = e-161
 Identities = 286/445 (64%), Positives = 340/445 (76%)
 Frame = +2

Query: 107  NIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFKIDY 286
            N  K N YP+YVK+ V+  F +SL P  +F+   QE+IISN H  T QT +LSLSFK+DY
Sbjct: 25   NPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDY 84

Query: 287  FSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLFIG* 466
            FS++FIPVALFVT SI+EFS+ Y++SDP IN+FFKY           VTANNLFQLFIG 
Sbjct: 85   FSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGW 144

Query: 467  EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQIFIL 646
            EGVGI+SFLLI   + R DANTAA+QAILYNRIGDIGF+L++A F+ HSN+ D QQ+ +L
Sbjct: 145  EGVGIMSFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALL 204

Query: 647  NNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFY 826
            N      PL+G      GKSAQ GLHP LPSA+EGPTPVSALLHSST+VVAG+FLLIRF+
Sbjct: 205  NANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFH 264

Query: 827  PLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHL 1006
            PL E + L+QT+TLCLGAITTLF A+CA+TQNDIKKIVAFSTSSQLGL++VTIGINQPHL
Sbjct: 265  PLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL 324

Query: 1007 AFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMP 1186
            AFLHIC HAFFKA+LF+CSGSIIH+LN+EQDIRK+GGL K +P T+T+L IGSLAL GMP
Sbjct: 325  AFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMP 384

Query: 1187 YLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLVLIN 1366
            +LTGFYSKD IIE  N+S                      R+I     G+PRFP L  IN
Sbjct: 385  FLTGFYSKDHIIETANMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNIN 444

Query: 1367 ENNPLLINSIKRLLIGSIFAGFIIS 1441
            ENNP L+N IKRL  GS+FAGF+I+
Sbjct: 445  ENNPTLLNPIKRLAAGSLFAGFLIT 469



 Score = 38.9 bits (89), Expect(2) = e-161
 Identities = 18/36 (50%), Positives = 25/36 (69%)
 Frame = +1

Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
            +NI P +     IPLY+K+TAL VT +G + AL+LN
Sbjct: 470  NNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLN 505


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,514,353
Number of extensions: 1061541
Number of successful extensions: 2640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,770,016
Effective search space: 6218176736
Effective search space used: 6218176736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus].         541   e-154
Alignment   gi|XP_001478993.1| PREDICTED: NADH-ubiquinone oxidoreductase ch...   276   3e-74
Alignment   gi|XP_003085927.1| PREDICTED: NADH-ubiquinone oxidoreductase ch...   274   1e-73
Alignment   gi|XP_003084632.1| PREDICTED: NADH-ubiquinone oxidoreductase ch...   250   3e-66
Alignment   gi|XP_003086414.1| PREDICTED: NADH-ubiquinone oxidoreductase ch...   244   1e-64
Alignment   gi|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus].          60   4e-09

>ref|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus].
          Length = 607

 Score =  541 bits (1395), Expect = e-154
 Identities = 278/463 (60%), Positives = 342/463 (73%)
 Frame = +2

Query: 98   SNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFK 277
            S SN+ K   +P Y  T++ ++F +SL+PLL+F H   E +I+  H +T+ ++EL +SFK
Sbjct: 22   SMSNLIKHINFPLYTTTSIKFSFIISLLPLLMFFHNNMEYMITTWHWVTMNSMELKMSFK 81

Query: 278  IDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLF 457
             D+FS++F  VALFVT SI++FS  Y+HSDP INRF KY            +ANN+FQLF
Sbjct: 82   TDFFSILFTSVALFVTWSIMQFSSWYMHSDPNINRFIKYLTLFLITMLILTSANNMFQLF 141

Query: 458  IG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQI 637
            IG EGVGI+SFLLIG  +GRTDANTAALQAILYNRIGDIGF+L++  F  + N+ +LQQI
Sbjct: 142  IGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMVWFSLNMNSWELQQI 201

Query: 638  FILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLI 817
               NN    IPL+G      GKSAQFGLHP LPSA+EGPTPVSALLHSST+VVAG+FLL+
Sbjct: 202  MFSNNNDNLIPLMGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLV 261

Query: 818  RFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQ 997
            RF+PL   N  + T  LCLGA+TTLFTA+CA+TQNDIKKI+AFSTSSQLGL++VT+G+NQ
Sbjct: 262  RFHPLTTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQ 321

Query: 998  PHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALT 1177
            PHLAFLHIC HAFFKA+LF+CSGSIIHSL DEQDIRK+G + K +PFT++ L+IGSLALT
Sbjct: 322  PHLAFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALT 381

Query: 1178 GMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLV 1357
            GMP+LTGFYSKDLIIEA+N                        RII+F  + KPRFPPL+
Sbjct: 382  GMPFLTGFYSKDLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLI 441

Query: 1358 LINENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTXTYPF 1486
             INEN+P L+N IKRL  GSIFAGF+IS           T P+
Sbjct: 442  SINENDPDLMNPIKRLAFGSIFAGFVISYNIPPTSIPVLTMPW 484


>ref|XP_001478993.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
            musculus].
          Length = 184

 Score =  276 bits (706), Expect = 3e-74
 Identities = 135/166 (81%), Positives = 152/166 (91%)
 Frame = +2

Query: 737  SAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAIT 916
            +AIEGPTPVSALLHSSTIVVAG+FLL+RF+PL   N  + T  LCLGA+TTLFTA+CA+T
Sbjct: 13   TAIEGPTPVSALLHSSTIVVAGIFLLVRFHPLTTNNNFILTTILCLGALTTLFTAICALT 72

Query: 917  QNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQ 1096
            QNDIKKIVAFSTS+QLGLIIVT+GINQP+LAFLHIC HAFFKAILFICSGSIIHSL DEQ
Sbjct: 73   QNDIKKIVAFSTSNQLGLIIVTLGINQPYLAFLHICTHAFFKAILFICSGSIIHSLADEQ 132

Query: 1097 DIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
            DIRKIG + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 133  DIRKIGNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 178


>ref|XP_003085927.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
            musculus].
          Length = 198

 Score =  274 bits (701), Expect = 1e-73
 Identities = 134/164 (81%), Positives = 150/164 (91%)
 Frame = +2

Query: 743  IEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQN 922
            IEGPTPVSALLHSSTIVVAG+FLL+RF+PL   N  + T  LCLGA+TTLFTA+CA+TQN
Sbjct: 29   IEGPTPVSALLHSSTIVVAGIFLLVRFHPLTTNNNFILTTILCLGALTTLFTAICALTQN 88

Query: 923  DIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDI 1102
            DIKKIVAFSTS+QLGLIIVT+GINQP+LAFLHIC HAFFKAILFICSGSIIHSL DEQDI
Sbjct: 89   DIKKIVAFSTSNQLGLIIVTLGINQPYLAFLHICTHAFFKAILFICSGSIIHSLADEQDI 148

Query: 1103 RKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
            RKIG + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 149  RKIGNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 192


>ref|XP_003084632.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
            musculus].
          Length = 169

 Score =  250 bits (638), Expect = 3e-66
 Identities = 119/161 (73%), Positives = 143/161 (88%)
 Frame = +2

Query: 752  PTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIK 931
            P+PV ++L++  ++VAG+FLL+RF+PL   N  + T  LCLGA+TTLFT +CA+TQNDIK
Sbjct: 3    PSPVQSILYNYIVIVAGIFLLVRFHPLTTINNYILTTILCLGALTTLFTDICALTQNDIK 62

Query: 932  KIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKI 1111
            KIVAFSTSSQLGLIIVT+GINQP+LAFLHIC HAFFKA+LFICSGSIIHSL DEQ+IRKI
Sbjct: 63   KIVAFSTSSQLGLIIVTLGINQPYLAFLHICTHAFFKAMLFICSGSIIHSLADEQEIRKI 122

Query: 1112 GGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
            G + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 123  GNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 163


>ref|XP_003086414.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
            musculus].
          Length = 167

 Score =  244 bits (623), Expect = 1e-64
 Identities = 119/150 (79%), Positives = 135/150 (90%)
 Frame = +2

Query: 785  TIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQL 964
            TIVVAG+FLL+RF+PL   N  + T  LCLGA+TTLFTA+CA+TQNDIKKIVAFSTSSQL
Sbjct: 12   TIVVAGIFLLVRFHPLTTNNNYILTTILCLGALTTLFTAICALTQNDIKKIVAFSTSSQL 71

Query: 965  GLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTT 1144
            GLIIVT+GINQP LAFLHIC HAFFKA+LFICSGSIIHSL DEQ+IRKIG + K IPFT+
Sbjct: 72   GLIIVTLGINQPXLAFLHICTHAFFKAMLFICSGSIIHSLADEQEIRKIGNITKTIPFTS 131

Query: 1145 TALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
            + L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 132  SCLVIGSLALTGMPFLTGFYSKDLIIEAIN 161


>ref|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus].
          Length = 345

 Score = 60.5 bits (145), Expect = 4e-09
 Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
 Frame = +2

Query: 704  SAQFGLHP*---LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCL 874
            S + GL P    LP   +G      L+  +   +A + +LI+ YPL+ +     TI L L
Sbjct: 103  SMKLGLAPFHFWLPEVTQGIPLHMGLILLTWQKIAPLSILIQIYPLLNS-----TIILML 157

Query: 875  GAITTLFT-ALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAIL 1051
             AIT++F  A   + Q  ++KI+A+S+ + +G ++  +  N P L  L++ ++    A +
Sbjct: 158  -AITSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAILPYN-PSLTLLNLMIYIILTAPM 215

Query: 1052 FICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLII 1222
            F+        LN+   I  I  L+   P   T + +  L+L G+P LTGF  K +II
Sbjct: 216  FMAL-----MLNNSMTINSISLLWNKTPAMLTMISLMLLSLGGLPPLTGFLPKWIII 267


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,890,344
Number of extensions: 908229
Number of successful extensions: 2397
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2394
Number of HSP's successfully gapped: 6
Length of query: 528
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 422
Effective length of database: 12,433,743
Effective search space: 5247039546
Effective search space used: 5247039546
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_008644.1| NADH dehydrogenase subunit 5 [Sus scrofa].           726   0.0  

>ref|NP_008644.1| NADH dehydrogenase subunit 5 [Sus scrofa].
          Length = 606

 Score =  726 bits (1875), Expect = 0.0
 Identities = 382/483 (79%), Positives = 408/483 (84%)
 Frame = +2

Query: 35   INPFASXXXXXXXXXXXXXXXSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQE 214
            +NPFAS               SNSNIYKTNLYPNYVKTTVSYAFTLSLVPLL+F+HTGQE
Sbjct: 1    MNPFASLTLTTLIILTIPIMMSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLMFMHTGQE 60

Query: 215  IIISN*H*ITLQTVELSLSFKIDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKY 394
            +IISN H +TLQTVELSLSFK+DYFSV+FIPVALFVT SI+EFS+ Y+HSDPFINRFFKY
Sbjct: 61   MIISNWHWMTLQTVELSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKY 120

Query: 395  XXXXXXXXXXXVTANNLFQLFIG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDI 574
                       VTANNLFQLFIG EGVGI+SFLLIG  HGRTDANTAALQAILYNRIGDI
Sbjct: 121  LVLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDI 180

Query: 575  GFVLSIA*FLTHSNA*DLQQIFILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGP 754
            GFVLS+A FLTHSNA DLQQIF+LNNECPN+PLIG      GKSAQFGLHP LPSA+EGP
Sbjct: 181  GFVLSMAWFLTHSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAMEGP 240

Query: 755  TPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKK 934
            TPVSALLHSST+VVAGVFLLIRFYPL+ETNKLVQT+TLCLGAITTLFTALCAITQNDIKK
Sbjct: 241  TPVSALLHSSTMVVAGVFLLIRFYPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKK 300

Query: 935  IVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIG 1114
            IVAFSTSSQLGL++VTIGINQPHLAFLHICMHAFFKA+LF+CSGSIIHSLNDEQDIRK+G
Sbjct: 301  IVAFSTSSQLGLMMVTIGINQPHLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKMG 360

Query: 1115 GLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXX 1294
            GLYKA+PFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN+S                  
Sbjct: 361  GLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMSYTNAWALLMTLIATSLTA 420

Query: 1295 XXXXRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTX 1474
                RIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIIS     +     
Sbjct: 421  AYSTRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPPMTVPNT 480

Query: 1475 TYP 1483
            T P
Sbjct: 481  TMP 483



 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 27/36 (75%), Positives = 34/36 (94%)
 Frame = +1

Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
            +NIPP+TVPN  +PLY+K+TALIVTI+GF+LALELN
Sbjct: 470  NNIPPMTVPNTTMPLYMKMTALIVTIMGFMLALELN 505


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,886,609
Number of extensions: 650507
Number of successful extensions: 1603
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 424
Effective length of database: 8,754,644
Effective search space: 3711969056
Effective search space used: 3711969056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002773
         (1585 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr02                                                        1818   0.0  
Sscrofa_ChrX                                                          961   0.0  
Sscrofa_Chr08                                                         961   0.0  
Sscrofa_Chr17                                                         882   0.0  
Sscrofa_Chr04                                                         535   e-149
gb|GL894051.2| Sus scrofa unplaced genomic scaffold ChrUScaf1935      218   7e-54
Sscrofa_Chr13                                                         151   1e-33
Sscrofa_Chr03                                                         131   1e-27
Sscrofa_Chr12                                                         103   3e-19
Sscrofa_Chr01                                                         103   3e-19

>Sscrofa_Chr02 
||          Length = 162569375

 Score = 1818 bits (917), Expect = 0.0
 Identities = 1392/1552 (89%), Gaps = 5/1552 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1        aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
                |||||||||||||||||||||||| |||||||||||||||  ||||||| ||||| ||||
Sbjct: 96266777 aaccaaaaaattggtgcaactccagataaaagtaataaacttattcgccccactcgcatt 96266718

                                                                            
Query: 61       aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
                ||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 96266717 aactacattaactattctaatcataccaattataatatccaactcaaacatctacaaaac 96266658

                                                                            
Query: 121      taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
                 ||||| ||||| ||||| ||||||||| | |||||||  ||||||||||||||||||||
Sbjct: 96266657 caacctctaccccaactatgtaaaaaccgctgtatcctgtgccttcactctcagcctagt 96266598

                                                                            
Query: 181      ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
                |||| || |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 96266597 ccccctattaatatttatccacacaggccaagaaataattatttcaaactgacactgaat 96266538

                                                                            
Query: 241      aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
                |||| |||| ||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 96266537 aaccttacaaaccgtagaactatcccttagcttcaaaatagattatttctcagtaatatt 96266478

                                                                            
Query: 301      cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
                || |||||||||||||||  ||||||||||||| |||||||| |||||||||||||||||
Sbjct: 96266477 cactcccgtagcactatttttcacatgatcaatcatagaattttccatatgatacataca 96266418

                                                                            
Query: 361      ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
                | | ||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 96266417 cgcggaccccttcattaatcgattctttaaatacctattactattcttaattactataat 96266358

                                                                            
Query: 421      aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
                ||| |||||||| || |||||| |||| ||||| || |||||||| ||| ||||||||||
Sbjct: 96266357 aattctcgtaactgctaacaacgtctttcaacttttcatcggatgggaaagcgtaggaat 96266298

                                                                            
Query: 481      catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
                 || |||||| | |||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 96266297 tatgtcattcttactaatcggatgatggcatggacgaacagacgccaacacagccgcact 96266238

                                                                            
Query: 541      acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
                ||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 96266237 acaggcaatcctatacaaccgcatcggagatattggattcgtcctatccatggcatgatt 96266178

                                                                            
Query: 601      cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
                |||| |||||||||||||||||||  | |||||||||||||  ||||| |||||||||||
Sbjct: 96266177 cctatcccactcaaacgcatgagacttccaacaaatctttaatctaaataatgaatgccc 96266118

                                                                            
Query: 661      aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
                ||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
Sbjct: 96266117 aaacataccattaataggtctgctcctagctgcagcaggaaaatcagctcaattcggatt 96266058

                                                                            
Query: 721      acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
                ||| || ||| | |||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct: 96266057 acacccttgactaccctcagcaatagaaggcccaactcctgtatcagcactactgcactc 96265998

                                                                            
Query: 781      cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
                ||| ||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||||||
Sbjct: 96265997 cagcacaatagtagtggcaggagtattcctactcatccgcttctactccttgatagaaac 96265938

                                                                            
Query: 841      taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
                 || |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||
Sbjct: 96265937 caataaactagtccaaactatgacactatgcctaggagccattaccaccctatttacagc 96265878

                                                                            
Query: 901      actatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagcca 960
                |||||||||| ||||||||||||||||        | |||||||||||||||||||||| 
Sbjct: 96265877 actatgtgcagtcacacaaaatgatattaaaaaaattgtagccttctcaacttcaagccg 96265818

                                                                            
Query: 961      actaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacat 1020
                ||||||  | |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 96265817 actaggtctaataatagtgacaatcggcattaaccaaccccacctggcatttcttcacat 96265758

                                                                            
Query: 1021     ctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacag 1080
                |||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 96265757 ctgcatacatgctttcttcaaagcaatactattcatatgttccggatccattatccacag 96265698

                                                                            
Query: 1081     cctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcac 1140
                ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 96265697 cctcaatgacgaacaagacatccgaaagataggcggactgtacaaagcaataccatttac 96265638

                                                                            
Query: 1141     aacaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggatt 1200
                ||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 96265637 aacaacagcactaatcattggaaacctagcattaacaggaatgccttacctcacaggatt 96265578

                                                                            
Query: 1201     ctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccct 1260
                 |||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||
Sbjct: 96265577 ttactcaaaagaccttatcattgaagcagcaaacacattctatacaaacgcctgagccct 96265518

                                                                            
Query: 1261     actaataacattaattgccacatccctaaccgctgcctac----agcactcgaattatct 1316
                | |||||||||||||||||||||||||||||||||| |||    || |||||||||||||
Sbjct: 96265517 attaataacattaattgccacatccctaaccgctgcttacattaagtactcgaattatct 96265458

                                                                            
Query: 1317     tctttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacc 1376
                |||||||| |||||||  | ||||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 96265457 tctttgcactcctaggacagccacgtttctcacccctagtcttaattaatgaaaacaacc 96265398

                                                                            
Query: 1377     ccctactaattaactctattaaacgccttttaatcggaagcattttcgctggctttatca 1436
                || ||||||||||||||||  |||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 96265397 ccttactaattaactctatccaacgtcttttaatcggaagcatcttcgccggctttatca 96265338

                                                                            
Query: 1437     tctcc-acaacatcccaccnattacagtaccaaacanncacatacccctttacataaaaa 1495
                ||||| ||||||| || || || ||| || ||||||     ||||||||||  |||||||
Sbjct: 96265337 tctccaacaacattccgccaataacaatatcaaacatgacaatacccctttgtataaaaa 96265278

                                                                    
Query: 1496     taacagccctaatcgtaaccatcataggattcatactagccctagagctaaa 1547
                ||||||||||||||||||| |||||||| |||||| |||||||||| |||||
Sbjct: 96265277 taacagccctaatcgtaactatcataggcttcatattagccctagaactaaa 96265226



 Score = 1766 bits (891), Expect = 0.0
 Identities = 1386/1549 (89%), Gaps = 4/1549 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1         aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
                 ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||   |||
Sbjct: 120058326 aaccaaaaaattggtgcaactccaaataaaagtaataaacctattcgccccacttgtatt 120058385

                                                                             
Query: 61        aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
                 ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 120058386 aactacattaactattctaaccataccaattataatatccaactcaaacatctacaaaac 120058445

                                                                             
Query: 121       taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
                  ||||||||||| ||||| ||||||||||| |||||||  ||||||||||||||  ||||
Sbjct: 120058446 caacctttaccccaactatgtaaaaaccactgtatcctgtgccttcactctcagtttagt 120058505

                                                                             
Query: 181       ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
                 ||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 120058506 ccccttattaatatttatccacacaggccaagaaataattatttcaaactgacactgaat 120058565

                                                                             
Query: 241       aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
                  ||| |||| ||||||||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 120058566 gaccttacaaaccgtagaactatcacttagcttcaaaatagattacttctcagtaatatt 120058625

                                                                             
Query: 301       cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
                 || ||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct: 120058626 cactcccgtagcactatttgtcacatgatcaattatagagttttccatatgatacatgca 120058685

                                                                             
Query: 361       ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
                 ||| || ||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 120058686 ctcgga-cccttcatcaatcaattctttaagtacctattactattcttaattactataat 120058744

                                                                             
Query: 421       aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
                 ||| ||||||||||| || |||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 120058745 aattctcgtaaccgctaataacctctttcaacttttttttggatgagagggcgtaggaat 120058804

                                                                             
Query: 481       catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
                 ||| |||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||
Sbjct: 120058805 catgtcattcctactaattggatgatggcatggacgaacagatgccaacacagccgcact 120058864

                                                                             
Query: 541       acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
                 ||| |||||||||||||| || || ||||| |||||||| ||| |||| || ||||||||
Sbjct: 120058865 acaggcaatcctatacaatcgtattggagatattggattcgtcttatctatggcatgatt 120058924

                                                                             
Query: 601       cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
                 |||| | |||||||| ||||||||  | |||||||||||||||||||| || ||||| ||
Sbjct: 120058925 cctatctcactcaaatgcatgagacttccaacaaatctttatactaaataacgaatgtcc 120058984

                                                                             
Query: 661       aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
                 ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120058985 aaacataccattaataggtctactcctagctgcagcaggaaaatcagctcaattcggact 120059044

                                                                             
Query: 721       acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
                 ||| || ||| | |||||||||| ||||||||||||||| || |||||| |||| |||||
Sbjct: 120059045 acacccttgactaccctcagcaa-agaaggcccaactcctgtgtcagcactactgcactc 120059103

                                                                             
Query: 781       cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
                 ||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| 
Sbjct: 120059104 cagcacaatagtagtagcaggagtatttctactcatccgcttctaccccttgatagaaaa 120059163

                                                                             
Query: 841       taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
                  || ||| |||| |||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct: 120059164 caataaattagtccaaactatgacactatgtctaggagccattaccaccttatttacagc 120059223

                                                                             
Query: 901       actatgtgcaatcacacaaaatgata-tcnnnnnnntcgtagccttctcaacttcaagcc 959
                 |||||||||||||||||||||||||| |        | ||||||||||||||||||||||
Sbjct: 120059224 actatgtgcaatcacacaaaatgatattaaaaaaaattgtagccttctcaacttcaagcc 120059283

                                                                             
Query: 960       aactaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcaca 1019
                 ||||| | || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 120059284 aactaagtttaataatagtgacaatcggcattaaccaaccccacctggcatttcttcaca 120059343

                                                                             
Query: 1020      tctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccaca 1079
                 |||| || ||  |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 120059344 tctgtatacatactttcttcaaagcaatactattcatatgttccggatccattattcaca 120059403

                                                                             
Query: 1080      gcctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattca 1139
                 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 120059404 gcctcaatgacgaacaagacatccgaaagataggcggactatataaagcaataccattta 120059463

                                                                             
Query: 1140      caacaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggat 1199
                 |||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 120059464 caacaacagcactaatcattggaagcctagcattaacaggaatgccttacctcacaggat 120059523

                                                                             
Query: 1200      tctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccc 1259
                 | |||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||
Sbjct: 120059524 tttactcaaaagaccttatcattgaagcagcaaacacatcctatacaaacgcctgagccc 120059583

                                                                             
Query: 1260      tactaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttct 1319
                 || |||||||||||||||||||||| ||||| ||||| |||||  || ||||||||||||
Sbjct: 120059584 tattaataacattaattgccacatctctaactgctgcttacagttcttgaattatcttct 120059643

                                                                             
Query: 1320      ttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataaccccc 1379
                 ||||| |||||||  | ||||||||| |||||||| || |||||||||||||||||||| 
Sbjct: 120059644 ttgcactcctaggacagccacgtttctcacccctaatcttaattaatgaaaataacccct 120059703

                                                                             
Query: 1380      tactaattaactctattaaacgccttttaatcggaagcattttcgctggctttatcatct 1439
                 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 120059704 tactaattaactctatcaaacgccttttaatcggaagcatcttcgccggctttatcatct 120059763

                                                                             
Query: 1440      cc-acaacatcccaccnattacagtaccaaacanncacatacccctttacataaaaataa 1498
                 || ||||||||||||| || ||| |||||||||     ||||||||||| ||||||||||
Sbjct: 120059764 ccaacaacatcccaccaataacaataccaaacatgacaatacccctttatataaaaataa 120059823

                                                                  
Query: 1499      cagccctaatcgtaaccatcataggattcatactagccctagagctaaa 1547
                 ||||||| |||||||| || ||||| || ||| |||||||||| |||||
Sbjct: 120059824 cagccctgatcgtaactattataggctttatattagccctagaactaaa 120059872


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  961 bits (485), Expect = 0.0
 Identities = 1186/1420 (83%), Gaps = 9/1420 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1        aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
                ||||||| ||||||||||| ||||||||||||||||||||| ||| |||| |||| || |
Sbjct: 23484933 aaccaaagaattggtgcaattccaaataaaagtaataaacctatttgccttactcgcact 23484992

                                                                            
Query: 61       aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
                |||||||||| ||||||| || || ||||| |||||||||||||| ||||||||||||||
Sbjct: 23484993 aaccacactagctattctcacaataccaatcataatatccaactctaacatctacaaaac 23485052

                                                                            
Query: 121      taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
                | |||| |||||||| ||||||||||||||||| |||||| |||||||  | |||||| |
Sbjct: 23485053 tgacctgtaccctaattacgtaaaaaccaccgtgtcctacaccttcacaattagcctaat 23485112

                                                                            
Query: 181      ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
                |||| || |||||||||| |||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 23485113 ccccatattaatatttatccacacaggtcaagaaataattatctcaaattgacactgaat 23485172

                                                                            
Query: 241      aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
                | |||| || || |||||||| || |||||||| || ||||| || |||||| |||||||
Sbjct: 23485173 agccctccaaactgtagaactgtcacttagcttcaacatagattacttctcaataatatt 23485232

                                                                            
Query: 301      cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
                  | || || ||| | || |||||||||||||| ||||||||||||||| || | || ||
Sbjct: 23485233 tgtcccagtggcattgtttgtcacatgatcaatcatagaattctccataggacatatgca 23485292

                                                                            
Query: 361      ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
                ||||||||| ||||| ||||||||||| || ||| ||||||||||| | || || |||||
Sbjct: 23485293 ctcagaccctttcattaaccgattcttcaagtacttactactattccttattaccataat 23485352

                                                                            
Query: 421      aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
                ||||||||||||| | |||||  | |||||||| |||||  | ||||| || ||||||||
Sbjct: 23485353 aatcctcgtaaccactaacaattttttccaactttttattagctgagagggtgtaggaat 23485412

                                                                            
Query: 481      catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
                 ||||| ||||| || || ||||| ||||| |||| |||||| || ||||||||||||||
Sbjct: 23485413 tatatctttcctactcattggatggtgacatggacaaacagatgctaacacagctgcact 23485472

                                                                            
Query: 541      acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
                ||||||||||||| | |||||||| | |||||| |||||  |||| || |||||| ||||
Sbjct: 23485473 acaagcaatcctagataaccgcattgaagacatcggattcatcctgtcaatagcaagatt 23485532

                                                                            
Query: 601      cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
                 ||  | |||||||| ||||||||  | |||||||| |  |||||||||| | | |||||
Sbjct: 23485533 tctgtctcactcaaatgcatgagacttccaacaaatttccatactaaacagtaattgccc 23485592

                                                                            
Query: 661      aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
                | |||||||| | || ||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 23485593 agacataccactgataggcctactcctggctgcagcaggaaaatgagcccaattcggact 23485652

                                                                            
Query: 721      acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
                ||| || ||| | | ||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct: 23485653 acaaccatgactacgctcagcaatagaaggtccaaccccagtatcagcattactccactc 23485712

                                                                            
Query: 781      cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
                 || |||||||| |||||||| || || ||||| ||  | ||||||||  ||| ||||| 
Sbjct: 23485713 aagcacaatagtggtagcaggagttttcctactaatttgattctacccactaacagaaaa 23485772

                                                                            
Query: 841      taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
                |||||||||| | ||||| || |||||||||||| | || || |||||| | || || ||
Sbjct: 23485773 taacaaactaatccaaacaatgacactatgcctaagggccattaccaccctcttcacggc 23485832

                                                                            
Query: 901      actatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagcca 960
                |||||| ||  | || |||||  |||||       || ||||||||| ||||||||||||
Sbjct: 23485833 actatgcgcccttacccaaaacaatatcaaaaaaatcatagccttcttaacttcaagcca 23485892

                                                                            
Query: 961      actaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacat 1020
                 || ||| | ||| |||| ||||| ||||||||||| ||||| |||||||| || || ||
Sbjct: 23485893 gctgggcctaatattagtaacaattggcatcaaccagccccatctagcattcctccatat 23485952

                                                                            
Query: 1021     ctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacag 1080
                |||||  || || ||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 23485953 ctgcacacatgcattctttaaagcaatattattcatatgctccggatccattattcacag 23486012

                                                                            
Query: 1081     cctcaatgacgaacaaga-catccgaaaaataggcggactgtataaagcaataccattca 1139
                ||||||||| ||||||||  ||| ||||||||||| ||||||| |||||||||||||| |
Sbjct: 23486013 cctcaatgatgaacaagataatctgaaaaataggcagactgtacaaagcaataccattta 23486072

                                                                            
Query: 1140     caacaa-cagcactaattattggaagcctggcattaacaggaatgccttatctcacagga 1198
                |||||| |||| |||||  ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23486073 caacaaccagcgctaatcgttggaagcctggcattaacaggaataccttatctcacagga 23486132

                                                                            
Query: 1199     ttctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagcc 1258
                || |||||||||||||| ||||||||||||| ||||| ||| || |||||||||| ||||
Sbjct: 23486133 ttttactcaaaagacctaatcattgaagcagcaaatacatcgtatacaaacgcctaagcc 23486192

                                                                            
Query: 1259     ctactaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttc 1318
                |||||||||||| | ||||||||||||||||| |       | |||| ||||| || |||
Sbjct: 23486193 ctactaataacactcattgccacatccctaacag-------ccgcacccgaatcattttc 23486245

                                                                            
Query: 1319     tttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacccc 1378
                || ||| | |||||  ||||||| |||  || | ||||| ||||||||||||||||||||
Sbjct: 23486246 ttcgcacttctaggataaccacgcttcttacgcttagtcttaattaatgaaaataacccc 23486305

                                                        
Query: 1379     ctactaattaactctattaaacgccttttaatcggaagca 1418
                ||| ||||||| ||||||||| ||||| |||| |||||||
Sbjct: 23486306 ctattaattaattctattaaatgccttctaattggaagca 23486345


>Sscrofa_Chr08 
||          Length = 148491826

 Score =  961 bits (485), Expect = 0.0
 Identities = 910/1051 (86%), Gaps = 3/1051 (0%)
 Strand = Plus / Minus

                                                                             
Query: 500       ggatgatgacacggacgaacagacgccaacacagctgcactacaagcaatcctatacaac 559
                 ||||||||||| ||||||||||||  ||||||||| ||||| |||||||| |||||||| 
Sbjct: 127844678 ggatgatgacatggacgaacagacatcaacacagccgcactgcaagcaattctatacaat 127844619

                                                                             
Query: 560       cgcatcggagacattggatttgtcctatccatagcatgattcctaacccactcaaacgca 619
                 ||||| ||||| || || || ||| ||||||| |||||||||||| |||| ||| || ||
Sbjct: 127844618 cgcattggagatatcgggttcgtcttatccatggcatgattcctatcccattcagac-ca 127844560

                                                                             
Query: 620       tgagatcttcaacaaatctttatactaaacaatgaatgcccaaacataccattaatcggc 679
                 |||||  | |||||||||||||||||||||||  |||||||||| | ||||||||| |||
Sbjct: 127844559 tgagacttccaacaaatctttatactaaacaacaaatgcccaaatacaccattaataggc 127844500

                                                                             
Query: 680       ctactcctagctgcagcaggaaaatcagctcaattcggactacatccctgattgccctca 739
                 |||||| | ||  |||||||||||||||||||||||||||| || || ||| | ||||||
Sbjct: 127844499 ctactcttggccacagcaggaaaatcagctcaattcggactgcacccttgactaccctca 127844440

                                                                             
Query: 740       gcaatagaaggcccaactcccgtatcagcattactacactccagtacaatagtagtagca 799
                 ||||||||||||||||| || ||||||||| |||| ||||| || |||||||||||||||
Sbjct: 127844439 gcaatagaaggcccaaccccagtatcagcactactgcactctagcacaatagtagtagca 127844380

                                                                             
Query: 800       ggggtatttctactcatccgcttctaccccttaatagaaactaacaaactagttcaaact 859
                 || |||||  |||| ||||||||||||||  |||||||||  || ||||||| |||||||
Sbjct: 127844379 ggagtattcttacttatccgcttctaccctctaatagaaaacaataaactagatcaaact 127844320

                                                                             
Query: 860       ataacactatgcctaggagctatcaccaccttatttacagcactatgtgcaatcacacaa 919
                 |||||||||||||||||||| || |||||||| |||| ||||||||||||||||||| ||
Sbjct: 127844319 ataacactatgcctaggagccattaccaccttgtttatagcactatgtgcaatcacataa 127844260

                                                                             
Query: 920       aatgatatcnnnnnnntcgtagccttctcaacttcaagccaactaggcttgataatagtg 979
                 ||||| ||        | ||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 127844259 aatgacattaaaaaaattgtagccttctcaacttcaagccagctaggcctaataatagtg 127844200

                                                                             
Query: 980       acaatcggcatcaaccaaccccacctagcatttcttcacatctgcatgcacgctttcttc 1039
                 ||||| |||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 127844199 acaattggcatcaaccaaccccacctagcattccttcacatctgcatacatgcattcttc 127844140

                                                                             
Query: 1040      aaagcaatactattcatatgctccggatccattatccacagcctcaatgacgaacaagac 1099
                 ||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 127844139 aaagcaatattattcatatgctccggatccatcattcacagcctcaatgacgaaaaagac 127844080

                                                                             
Query: 1100      atccgaaaaataggcggactgtataaagcaataccattcacaacaacagcactaattatt 1159
                 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 127844079 atccgaaaaataggcggactatataaagcaataccatttacaacaacagcactaatcatt 127844020

                                                                             
Query: 1160      ggaagcctggcattaacaggaatgccttatctcacaggattctactcaaaagaccttatc 1219
                 |||||||| |||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct: 127844019 ggaagcctagcattaacaggaataccctaccttacaggattctactcaaaagaccttatc 127843960

                                                                             
Query: 1220      attgaagcagtaaatatatcctacacaaacgcctgagccctactaataacattaattgcc 1279
                 |||||||||| ||| | |||||| |||||||||||||||||  |||||||||||||  ||
Sbjct: 127843959 attgaagcagcaaacacatcctatacaaacgcctgagccctgttaataacattaatcacc 127843900

                                                                             
Query: 1280      acatccctaaccgctgcctacagcactcgaattatcttctttgcattcctagggaaacca 1339
                 ||||||||||| || |  ||||| ||||||||||| ||||||||| |||| ||  |||||
Sbjct: 127843899 acatccctaactgccgtttacagtactcgaattattttctttgcactcctgggacaacca 127843840

                                                                             
Query: 1340      cgtttcccacccctagtcctaattaatgaaaataaccccctactaattaactctattaaa 1399
                 ||||||   |||||| |||||||||||||||| |||||| |||| ||||||||||| |||
Sbjct: 127843839 cgtttcttgcccctaatcctaattaatgaaaacaaccccatactgattaactctatcaaa 127843780

                                                                             
Query: 1400      cgccttttaatcggaagcattttcgctggctttatcatctcc-acaacatcccaccnatt 1458
                  ||| | | ||| ||||||| ||||| |||||  |||||||| ||||||||||||| || 
Sbjct: 127843779 tgcc-tctgatcagaagcatcttcgccggcttcctcatctccaacaacatcccaccaata 127843721

                                                                             
Query: 1459      acagtaccaaacanncacatacccctttacataaaaataacagccctaatcgtaaccatc 1518
                 ||||||||| |||     |||||||||||||| ||||||||||  || |  |||||||| 
Sbjct: 127843720 acagtaccacacatgacaatacccctttacatgaaaataacagttctgactgtaaccatt 127843661

                                                
Query: 1519      ataggattcatactagccctagagctaaaca 1549
                 ||||| || |||||||| ||||| |||||||
Sbjct: 127843660 ataggctttatactagctctagaactaaaca 127843630



 Score =  163 bits (82), Expect = 4e-37
 Identities = 193/230 (83%)
 Strand = Plus / Plus

                                                                             
Query: 1203      actcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctac 1262
                 |||||||||| ||||||||||| |||| ||| | |||||||||||| || ||||||||||
Sbjct: 113051354 actcaaaagatcttatcattgaggcagcaaacacatcctacacaaatgcttgagccctac 113051413

                                                                             
Query: 1263      taataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttctttg 1322
                 |||||||| |||| || |||||||||||| | | ||||||||| |||||||| |||||||
Sbjct: 113051414 taataacactaatcgctacatccctaaccaccgtctacagcacccgaattattttctttg 113051473

                                                                             
Query: 1323      cattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataaccccctac 1382
                 || | |||||  ||||| | ||  ||| |||||| ||||||||||| || || ||  || 
Sbjct: 113051474 cacttctaggacaaccatgcttttcactcctagttctaattaatgagaacaatcctttat 113051533

                                                                   
Query: 1383      taattaactctattaaacgccttttaatcggaagcattttcgctggcttt 1432
                 |||| |||||||| ||||||||| ||||||||||||| || || ||||||
Sbjct: 113051534 taatcaactctatcaaacgccttctaatcggaagcatcttggccggcttt 113051583


>Sscrofa_Chr17 
||          Length = 69701581

 Score =  882 bits (445), Expect = 0.0
 Identities = 1161/1398 (83%), Gaps = 3/1398 (0%)
 Strand = Plus / Plus

                                                                            
Query: 3        ccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacattaa 62
                ||||| || |||||||||||||||||||||||||||||| ||  |||||||||||| |||
Sbjct: 15220649 ccaaagaagtggtgcaactccaaataaaagtaataaacctatatgcctcactcacactaa 15220708

                                                                            
Query: 63       ccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaacta 122
                |||||||| ||||||  || || ||||| ||||||| || ||| |||||||||||||| |
Sbjct: 15220709 ccacactagctattcccacaataccaatcataatatacatctctaacatctacaaaacca 15220768

                                                                            
Query: 123      acctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagtcc 182
                |||  || ||  | || |||||||||| | ||||||||||||||||| | |||||| |||
Sbjct: 15220769 accaatatccccattatgtaaaaaccaacatatcctacgccttcactattagcctaatcc 15220828

                                                                            
Query: 183      ccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaataa 242
                |  || ||||||| || |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct: 15220829 caatattaatattcatccacacaggtcaagaaataatcatctcaaactgacactgaatga 15220888

                                                                            
Query: 243      ccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatattca 302
                |||| ||||| |||||||| || ||| |||| || |||||  | |||||| |||||| ||
Sbjct: 15220889 ccctccagactgtagaactgtcactttgcttcaagatagatgacttctcaataatatgca 15220948

                                                                            
Query: 303      ttcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacatacact 362
                |||| |||||| |||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct: 15220949 ttccagtagcattatttgtcacatggtcgatcatagaattctccatatgatatatacact 15221008

                                                                            
Query: 363      cagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataataa 422
                ||||||| || || ||||||||||| || ||||||||| ||||| | || ||||||||||
Sbjct: 15221009 cagacccttttattaaccgattcttcaagtacctactattattcgtcattactataataa 15221068

                                                                            
Query: 423      tcctcgtaaccgccaacaacctcttccaactctttatcggatgagaag-gcgtaggaatc 481
                ||||||| ||||| |||||  | |||||||| || || || || |||| | |||||||| 
Sbjct: 15221069 tcctcgtcaccgctaacaatttattccaacttttcattggctg-gaagcgggtaggaatt 15221127

                                                                            
Query: 482      atatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcacta 541
                ||||| ||||| ||||||||||| || ||||||| |||||| ||||||||||| ||||||
Sbjct: 15221128 atatccttcctactaatcggatggtggcacggaccaacagatgccaacacagccgcacta 15221187

                                                                            
Query: 542      caagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgattc 601
                || |||||||| || ||||| ||| ||||||| |||||||||||||| ||||||||||| 
Sbjct: 15221188 caggcaatcctctataaccgtatcagagacatcggatttgtcctatcaatagcatgattt 15221247

                                                                            
Query: 602      ctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccca 661
                ||  |||||||||| ||||||||  | ||||||||||| |||||||||| | | ||||||
Sbjct: 15221248 ctgtcccactcaaatgcatgagacgtccaacaaatcttcatactaaacagtaactgccca 15221307

                                                                            
Query: 662      aacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggacta 721
                 |||||||| |||| ||  |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 15221308 gacataccactaatagggttactcctagctgcagcaggaaaatcagcccaatttggacta 15221367

                                                                            
Query: 722      catccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactcc 781
                || || ||| |||| ||||||| ||| || || || || |||||||||||||| ||| | 
Sbjct: 15221368 cacccatgactgccttcagcaacagagggtcccaccccagtatcagcattactccaccca 15221427

                                                                            
Query: 782      agtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaact 841
                |  |||||||| |||||||| ||||| ||||| ||  |||| |||||| || ||||||  
Sbjct: 15221428 aacacaatagtggtagcaggtgtattcctactaatttgcttttaccccctactagaaaac 15221487

                                                                            
Query: 842      aacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagca 901
                | ||||||  | ||||| || |||||||||||||| || |  || ||| | || | ||||
Sbjct: 15221488 agcaaacttatccaaacaatgacactatgcctaggggccactactacccttttcatagca 15221547

                                                                            
Query: 902      ctatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagccaa 961
                ||||| ||  | || ||||| |||||        | ||||| ||||||||||||||||||
Sbjct: 15221548 ctatgcgcccttacccaaaacgatataaaaaaaattgtagctttctcaacttcaagccaa 15221607

                                                                            
Query: 962      ctaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacatc 1021
                || ||| | |||||||| ||||| ||||||||||| ||| | ||||||||  | || |||
Sbjct: 15221608 ctgggcctaataatagtaacaattggcatcaaccagccctatctagcattcttccatatc 15221667

                                                                            
Query: 1022     tgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacagc 1081
                ||||  || || ||||  ||||| | | | ||||| ||||||||||||||||||||||||
Sbjct: 15221668 tgcacacatgcattctctaaagccaaattgttcatgtgctccggatccattatccacagc 15221727

                                                                            
Query: 1082     ctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcaca 1141
                ||||| || || |||||||||||| | || ||| ||||||| |||||||| ||||| || 
Sbjct: 15221728 ctcaacgatgagcaagacatccgagagatgggcagactgtacaaagcaatgccatttact 15221787

                                                                            
Query: 1142     acaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggattc 1201
                |||| |||||||||| |||||| ||| |||||||||||||| || |||||||||||||| 
Sbjct: 15221788 acaatagcactaattgttggaaacctagcattaacaggaataccctatctcacaggattt 15221847

                                                                            
Query: 1202     tactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagcccta 1261
                |||||||||||||| || |||||| ||| ||||| ||| || ||||||||||||||||||
Sbjct: 15221848 tactcaaaagacctaattattgaaacagcaaatacatcgtatacaaacgcctgagcccta 15221907

                                                                            
Query: 1262     ctaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttcttt 1321
                ||||| ||| |  |||||||||||||||| |||| ||| ||||| | ||| || ||||| 
Sbjct: 15221908 ctaatgacactcgttgccacatccctaacagctgtctatagcacccaaatcattttcttc 15221967

                                                                            
Query: 1322     gcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacccccta 1381
                ||| | |||||  ||||||||||| ||||| ||||||||||||| |||||||| ||||||
Sbjct: 15221968 gcacttctaggacaaccacgtttctcacccttagtcctaattaacgaaaataa-ccccta 15222026

                                  
Query: 1382     ctaattaactctattaaa 1399
                 |||||||||| ||||||
Sbjct: 15222027 ttaattaactccattaaa 15222044



 Score =  167 bits (84), Expect = 2e-38
 Identities = 111/120 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1304     actcgaattatcttctttgcattcctagggaaaccacgtttcccacccctagtcctaatt 1363
                ||||||||||||||||||||| |||||||  | ||||||||||||||||||||| |||| 
Sbjct: 55304126 actcgaattatcttctttgcactcctaggacagccacgtttcccacccctagtcttaatc 55304067

                                                                            
Query: 1364     aatgaaaataaccccctactaattaactctattaaacgccttttaatcggaagcattttc 1423
                |||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 55304066 aatgaaaacaaccccttactaattaactctattaaacgtcttttaatcggaagcattttc 55304007


>Sscrofa_Chr04 
||          Length = 143465943

 Score =  535 bits (270), Expect = e-149
 Identities = 363/394 (92%)
 Strand = Plus / Plus

                                                                            
Query: 104      tcaaacatctacaaaactaacctttaccctaactacgtaaaaaccaccgtatcctacgcc 163
                ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||| ||||
Sbjct: 97827638 tcaaacatctacaaaaccaacctctaccccaactacgtgaaaaccaccgtatcctgcgcc 97827697

                                                                            
Query: 164      ttcactctcagcctagtccccttactaatatttatacacacaggccaagaaataatcatt 223
                ||||| ||||||||  |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 97827698 ttcaccctcagcctgatccccttattaatatttattcacacaggccaagaaataattatt 97827757

                                                                            
Query: 224      tcaaactgacattgaataaccctacagaccgtagaactctctcttagctttaaaatagac 283
                ||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 97827758 tcaaactgacactgaataaccctacaaaccgtagaactttcccttagcttcaaaatagac 97827817

                                                                            
Query: 284      tatttctcagtaatattcattcccgtagcactattcgtcacatgatcaattatagaattc 343
                ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 97827818 tatttctcagtaatatttactcccgtagcactattcgtcacatgatcaattatagaattc 97827877

                                                                            
Query: 344      tccatatgatacatacactcagaccccttcatcaaccgattctttaaatacctactacta 403
                ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 97827878 tccatatgatacatacactcagaccccttcatcaatcgattctttaaatacctattacta 97827937

                                                                            
Query: 404      ttcttaatcactataataatcctcgtaaccgccaacaacctcttccaactctttatcgga 463
                |||||||| |||||||||||||||||||| |  ||||| ||||| |||||||| ||||||
Sbjct: 97827938 ttcttaattactataataatcctcgtaactggtaacaatctctttcaactcttcatcgga 97827997

                                                  
Query: 464      tgagaaggcgtaggaatcatatcattcctgctaa 497
                || ||||||||||||||||| || ||| ||||||
Sbjct: 97827998 tgggaaggcgtaggaatcatgtcgttcttgctaa 97828031



 Score =  161 bits (81), Expect = 1e-36
 Identities = 180/213 (84%)
 Strand = Plus / Plus

                                                                            
Query: 1213     ccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctactaataacatt 1272
                |||||| |||||||||| ||| | |||||||||||| || |||||||| ||||||||| |
Sbjct: 63139366 ccttattattgaagcagcaaacacatcctacacaaatgcttgagccctgctaataacact 63139425

                                                                            
Query: 1273     aattgccacatccctaaccgctgcctacagcactcgaattatcttctttgcattcctagg 1332
                ||| |||||||| |||||||| | ||| ||||| ||||| || ||||||||  |||||||
Sbjct: 63139426 aatcgccacatctctaaccgccgtctatagcacccgaatcattttctttgcgctcctagg 63139485

                                                                            
Query: 1333     gaaaccacgtttcccacccctagtcctaattaatgaaaataaccccctactaattaactc 1392
                  |||| |||||| ||||||| |||||||||||||||||||| || ||| |||| |||||
Sbjct: 63139486 acaaccgcgtttctcacccctggtcctaattaatgaaaataatcctctattaatcaactc 63139545

                                                 
Query: 1393     tattaaacgccttttaatcggaagcattttcgc 1425
                ||| ||||||||  | || |||||||| |||||
Sbjct: 63139546 tatcaaacgcctcctgattggaagcatcttcgc 63139578


>gb|GL894051.2| Sus scrofa unplaced genomic scaffold ChrUScaf1935
          Length = 119265

 Score =  218 bits (110), Expect = 7e-54
 Identities = 176/198 (88%)
 Strand = Plus / Plus

                                                                         
Query: 1083  tcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcacaa 1142
             ||||||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 74524 tcaatgatgagcaagatatccgaaagataggcggactatacaaagcaataccattcacaa 74583

                                                                         
Query: 1143  caacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggattct 1202
             ||||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||
Sbjct: 74584 caacagcactaatcattggaagcctagcattaacaggaataccctacctcacaggattct 74643

                                                                         
Query: 1203  actcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctac 1262
             |||| || ||||| ||||||||||||| ||| | |||||||||||| || ||||||||| 
Sbjct: 74644 actcgaaggacctcatcattgaagcagcaaacacatcctacacaaatgcttgagccctat 74703

                               
Query: 1263  taataacattaattgcca 1280
             |||||||| |||| ||||
Sbjct: 74704 taataacactaatcgcca 74721


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  151 bits (76), Expect = 1e-33
 Identities = 106/116 (91%)
 Strand = Plus / Plus

                                                                            
Query: 606      cccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgcccaaaca 665
                |||||||||| ||||||||  | ||||||||||||||| |||| | ||||||||||||||
Sbjct: 37626864 cccactcaaatgcatgagacttccaacaaatctttatattaaatagtgaatgcccaaaca 37626923

                                                                        
Query: 666      taccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggacta 721
                |||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 37626924 taccattaataggactactcctagctgcagcaggaaaatcagctcaattcagacta 37626979



 Score =  121 bits (61), Expect = 1e-24
 Identities = 120/138 (86%), Gaps = 5/138 (3%)
 Strand = Plus / Minus

                                                                             
Query: 1         aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
                 ||||||||||||||||||||||||||| |||| |||||||  | || ||||| |  ||||
Sbjct: 112014102 aaccaaaaaattggtgcaactccaaatgaaag-aataaacttactcacctcagttgcatt 112014044

                                                                             
Query: 61        aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
                 ||| ||    |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 112014043 aactac----actattctaaccataccaattataatatccaattcaaacatctacaaaac 112013988

                                   
Query: 121       taacctttaccctaacta 138
                  ||||||||||| |||||
Sbjct: 112013987 caacctttaccccaacta 112013970



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                     
Query: 204      caggccaagaaataatcatttcaaactgacattgaat 240
                |||||||||||||||| ||||||||||||||||||||
Sbjct: 20387704 caggccaagaaataattatttcaaactgacattgaat 20387740


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  131 bits (66), Expect = 1e-27
 Identities = 120/137 (87%), Gaps = 2/137 (1%)
 Strand = Plus / Plus

                                                                             
Query: 203       acaggccaagaaataatcatttcaaactgacattgaataaccctacagaccgtagaactc 262
                 ||||||||||||||||| |||||||||||||| ||||| ||| |||| || |||||||| 
Sbjct: 132008534 acaggccaagaaataattatttcaaactgacactgaatgaccttacaaactgtagaactg 132008593

                                                                             
Query: 263       tctcttagctttaaaatagactatttctcagtaatattcattcccgtagcactattcgtc 322
                 || || ||||| ||| |||| || ||||||||||||||  |||||||||||||||  |||
Sbjct: 132008594 tcactcagcttcaaagtagattacttctcagtaatatttgttcccgtagcactat--gtc 132008651

                                  
Query: 323       acatgatcaattataga 339
                 |||||||||||||||||
Sbjct: 132008652 acatgatcaattataga 132008668


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  103 bits (52), Expect = 3e-19
 Identities = 97/112 (86%)
 Strand = Plus / Plus

                                                                            
Query: 189      taatatttatacacacaggccaagaaataatcatttcaaactgacattgaataaccctac 248
                |||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||| |||
Sbjct: 58876451 taatatttatccacacaggtcaagaagtaatcatttcaaactgacactgaatgaccttac 58876510

                                                                    
Query: 249      agaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
                | || |||||||| || || ||||| ||| |||| || ||||||||||||||
Sbjct: 58876511 aaactgtagaactgtcgctcagcttcaaagtagattacttctcagtaatatt 58876562


>Sscrofa_Chr01 
||          Length = 315321322

 Score =  103 bits (52), Expect = 3e-19
 Identities = 73/80 (91%)
 Strand = Plus / Plus

                                                                             
Query: 140       gtaaaaaccaccgtatcctacgccttcactctcagcctagtccccttactaatatttata 199
                 |||||||||||||||||||  |||||||||||||||||| | ||| || |||||||||| 
Sbjct: 164215125 gtaaaaaccaccgtatcctgtgccttcactctcagcctaatacccctattaatatttatc 164215184

                                     
Query: 200       cacacaggccaagaaataat 219
                 ||||||||||||||||||||
Sbjct: 164215185 cacacaggccaagaaataat 164215204


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,195,262
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 30
Length of query: 1585
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1563
Effective length of database: 2,808,408,574
Effective search space: 4389542601162
Effective search space used: 4389542601162
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)