Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209215.1| NADH dehydrogenase subunit 5 [Bos taurus]. 627 e-180
>ref|YP_209215.1| NADH dehydrogenase subunit 5 [Bos taurus].
Length = 606
Score = 627 bits (1617), Expect = e-180
Identities = 324/460 (70%), Positives = 374/460 (81%)
Frame = +2
Query: 107 NIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFKIDY 286
N YK + YP YVKT +SYAF S++P ++FIH+GQE+IISN H +T+QT++LSLSFK+DY
Sbjct: 25 NTYKPSNYPLYVKTAISYAFITSMIPTMMFIHSGQELIISNWHWLTIQTLKLSLSFKMDY 84
Query: 287 FSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLFIG* 466
FS++FIPVALFVT SI+EFS+ Y++SDP IN+FFKY VTANNLFQLFIG
Sbjct: 85 FSMMFIPVALFVTWSIMEFSMWYMYSDPNINKFFKYLLLFLITMLILVTANNLFQLFIGW 144
Query: 467 EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQIFIL 646
EGVGI+SFLLIG +GR DANTAALQAILYNRIGDIGF+L++A FLT+ N DLQQIF+L
Sbjct: 145 EGVGIMSFLLIGWWYGRADANTAALQAILYNRIGDIGFILAMAWFLTNLNTWDLQQIFML 204
Query: 647 NNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFY 826
N N+PLIG GKSAQFGLHP LPSA+EGPTPVSALLHSST+VVAG+FLLIRFY
Sbjct: 205 NPSDSNMPLIGLALAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFY 264
Query: 827 PLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHL 1006
PL E NK +Q+ITLCLGAITTLFTA+CA+TQNDIKKI+AFSTSSQLGL++VTIGINQP+L
Sbjct: 265 PLTENNKYIQSITLCLGAITTLFTAMCALTQNDIKKIIAFSTSSQLGLMMVTIGINQPYL 324
Query: 1007 AFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMP 1186
AFLHIC HAFFKA+LF+CSGSIIHSLNDEQDIRK+GGL+KA+PFTTTALI+GSLALTGMP
Sbjct: 325 AFLHICTHAFFKAMLFMCSGSIIHSLNDEQDIRKMGGLFKAMPFTTTALIVGSLALTGMP 384
Query: 1187 YLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLVLIN 1366
+LTGFYSKDLIIEA N S RIIFFA LG+PRFP LV IN
Sbjct: 385 FLTGFYSKDLIIEAANTSYTNAWALLMTLIATSFTAIYSTRIIFFALLGQPRFPTLVNIN 444
Query: 1367 ENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTXTYPF 1486
ENNPLLINSIKRLLIGS+FAG+IIS T P+
Sbjct: 445 ENNPLLINSIKRLLIGSLFAGYIISNNIPPTTIPQMTMPY 484
Score = 52.4 bits (124), Expect = 1e-06
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +1
Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
+NIPP T+P +P Y+K TALIVTI+GFILALE++
Sbjct: 470 NNIPPTTIPQMTMPYYLKTTALIVTILGFILALEIS 505
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,087,392
Number of extensions: 1026885
Number of successful extensions: 2606
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2602
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,140,958
Effective search space: 5953343318
Effective search space used: 5953343318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008481.4| NADH dehydrogenase subunit 5 [Canis lupus famil... 625 0.0
Alignment gi|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus famil... 55 2e-07
>ref|NP_008481.4| NADH dehydrogenase subunit 5 [Canis lupus familiaris].
Length = 606
Score = 625 bits (1611), Expect(2) = 0.0
Identities = 316/469 (67%), Positives = 380/469 (81%)
Frame = +2
Query: 35 INPFASXXXXXXXXXXXXXXXSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQE 214
+N F+S S++ +YK LYP YVKT SYAF +S++P ++FI++GQE
Sbjct: 1 MNMFSSCMITALVILTLPIIMSSTKLYKNKLYPYYVKTATSYAFMISMIPTMMFIYSGQE 60
Query: 215 IIISN*H*ITLQTVELSLSFKIDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKY 394
IISN H +T+QT++LS+SFK+DYFS+IF+PVALFVT SI+EFS+ Y+HSDP+INRFFKY
Sbjct: 61 TIISNWHWMTIQTMKLSMSFKLDYFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFKY 120
Query: 395 XXXXXXXXXXXVTANNLFQLFIG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDI 574
VTANN+FQLFIG EGVGI+SFLLIG +GRTDANTAALQA+LYNRIGD+
Sbjct: 121 LLLFLITMMVLVTANNMFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAVLYNRIGDV 180
Query: 575 GFVLSIA*FLTHSNA*DLQQIFILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGP 754
GF++++A FL + N DLQQIFI N+ N+PL+G GKSAQFGLHP LPSA+EGP
Sbjct: 181 GFIMTMAWFLLNLNTWDLQQIFITTNDNFNLPLLGLLLAATGKSAQFGLHPWLPSAMEGP 240
Query: 755 TPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKK 934
TPVSALLHSST+VVAGVFLLIRF+PL+E N+ +QT+TLCLGAITTLFTA+CA+TQNDIKK
Sbjct: 241 TPVSALLHSSTMVVAGVFLLIRFHPLMEHNQTIQTLTLCLGAITTLFTAICALTQNDIKK 300
Query: 935 IVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIG 1114
IVAFSTSSQLGL++VTIGINQP+LAFLHIC HAFFKA+LF+CSGS+IHSLNDEQDIRK+G
Sbjct: 301 IVAFSTSSQLGLMMVTIGINQPYLAFLHICTHAFFKAMLFMCSGSVIHSLNDEQDIRKMG 360
Query: 1115 GLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXX 1294
GL+K +PFTTT+LIIGSLALTGMP+LTGFYSKDLIIE+ N S
Sbjct: 361 GLFKVLPFTTTSLIIGSLALTGMPFLTGFYSKDLIIESANTSNTNAWALLITLVATSLTA 420
Query: 1295 XXXXRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIIS 1441
RI+FFA LG+PRF P++LINENNPLLINSIKRLLIGS+FAG+IIS
Sbjct: 421 AYSTRIMFFALLGQPRFSPMILINENNPLLINSIKRLLIGSVFAGYIIS 469
Score = 48.9 bits (115), Expect(2) = 0.0
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = +1
Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
H+I P T+P +P Y+K+TAL VT +GFILALELN
Sbjct: 470 HSITPTTIPQMTMPHYLKMTALAVTTLGFILALELN 505
>ref|NP_008472.4| NADH dehydrogenase subunit 2 [Canis lupus familiaris].
Length = 347
Score = 55.1 bits (131), Expect = 2e-07
Identities = 40/165 (24%), Positives = 80/165 (48%)
Frame = +2
Query: 731 LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCA 910
+P +G T +S ++ + +A + +L + P I TN L + + + L
Sbjct: 115 VPEVTQGITLMSGMILLTWQKIAPMSILYQISPSINTNLL-----MLMALTSVLVGGWGG 169
Query: 911 ITQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLND 1090
+ Q ++KI+A+S+ + +G + I N P + L++ ++ IL S ++ LN
Sbjct: 170 LNQTQLRKIMAYSSIAHMGWMAAIITYN-PTMMVLNLTLY-----ILMTLSTFMLFMLNS 223
Query: 1091 EQDIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIE 1225
+ ++ P T+ ++I L+L G+P L+GF K +II+
Sbjct: 224 STTTLSLSHMWNKFPLITSMILILMLSLGGLPPLSGFIPKWMIIQ 268
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,283,200
Number of extensions: 1068529
Number of successful extensions: 2716
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2711
Number of HSP's successfully gapped: 3
Length of query: 528
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 421
Effective length of database: 15,307,552
Effective search space: 6444479392
Effective search space used: 6444479392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024036.1| NADH dehydrogenase subunit 5 [Homo sapiens]. 548 e-161
>ref|YP_003024036.1| NADH dehydrogenase subunit 5 [Homo sapiens].
Length = 603
Score = 548 bits (1413), Expect(2) = e-161
Identities = 286/445 (64%), Positives = 340/445 (76%)
Frame = +2
Query: 107 NIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFKIDY 286
N K N YP+YVK+ V+ F +SL P +F+ QE+IISN H T QT +LSLSFK+DY
Sbjct: 25 NPNKKNSYPHYVKSIVASTFIISLFPTTMFMCLDQEVIISNWHWATTQTTQLSLSFKLDY 84
Query: 287 FSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLFIG* 466
FS++FIPVALFVT SI+EFS+ Y++SDP IN+FFKY VTANNLFQLFIG
Sbjct: 85 FSMMFIPVALFVTWSIMEFSLWYMNSDPNINQFFKYLLIFLITMLILVTANNLFQLFIGW 144
Query: 467 EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQIFIL 646
EGVGI+SFLLI + R DANTAA+QAILYNRIGDIGF+L++A F+ HSN+ D QQ+ +L
Sbjct: 145 EGVGIMSFLLISWWYARADANTAAIQAILYNRIGDIGFILALAWFILHSNSWDPQQMALL 204
Query: 647 NNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFY 826
N PL+G GKSAQ GLHP LPSA+EGPTPVSALLHSST+VVAG+FLLIRF+
Sbjct: 205 NANPSLTPLLGLLLAAAGKSAQLGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRFH 264
Query: 827 PLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHL 1006
PL E + L+QT+TLCLGAITTLF A+CA+TQNDIKKIVAFSTSSQLGL++VTIGINQPHL
Sbjct: 265 PLAENSPLIQTLTLCLGAITTLFAAVCALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHL 324
Query: 1007 AFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMP 1186
AFLHIC HAFFKA+LF+CSGSIIH+LN+EQDIRK+GGL K +P T+T+L IGSLAL GMP
Sbjct: 325 AFLHICTHAFFKAMLFMCSGSIIHNLNNEQDIRKMGGLLKTMPLTSTSLTIGSLALAGMP 384
Query: 1187 YLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLVLIN 1366
+LTGFYSKD IIE N+S R+I G+PRFP L IN
Sbjct: 385 FLTGFYSKDHIIETANMSYTNAWALSITLIATSLTSAYSTRMILLTLTGQPRFPTLTNIN 444
Query: 1367 ENNPLLINSIKRLLIGSIFAGFIIS 1441
ENNP L+N IKRL GS+FAGF+I+
Sbjct: 445 ENNPTLLNPIKRLAAGSLFAGFLIT 469
Score = 38.9 bits (89), Expect(2) = e-161
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +1
Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
+NI P + IPLY+K+TAL VT +G + AL+LN
Sbjct: 470 NNISPASPFQTTIPLYLKLTALAVTFLGLLTALDLN 505
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,514,353
Number of extensions: 1061541
Number of successful extensions: 2640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2625
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,770,016
Effective search space: 6218176736
Effective search space used: 6218176736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus]. 541 e-154
Alignment gi|XP_001478993.1| PREDICTED: NADH-ubiquinone oxidoreductase ch... 276 3e-74
Alignment gi|XP_003085927.1| PREDICTED: NADH-ubiquinone oxidoreductase ch... 274 1e-73
Alignment gi|XP_003084632.1| PREDICTED: NADH-ubiquinone oxidoreductase ch... 250 3e-66
Alignment gi|XP_003086414.1| PREDICTED: NADH-ubiquinone oxidoreductase ch... 244 1e-64
Alignment gi|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus]. 60 4e-09
>ref|NP_904338.1| NADH dehydrogenase subunit 5 [Mus musculus].
Length = 607
Score = 541 bits (1395), Expect = e-154
Identities = 278/463 (60%), Positives = 342/463 (73%)
Frame = +2
Query: 98 SNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQEIIISN*H*ITLQTVELSLSFK 277
S SN+ K +P Y T++ ++F +SL+PLL+F H E +I+ H +T+ ++EL +SFK
Sbjct: 22 SMSNLIKHINFPLYTTTSIKFSFIISLLPLLMFFHNNMEYMITTWHWVTMNSMELKMSFK 81
Query: 278 IDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKYXXXXXXXXXXXVTANNLFQLF 457
D+FS++F VALFVT SI++FS Y+HSDP INRF KY +ANN+FQLF
Sbjct: 82 TDFFSILFTSVALFVTWSIMQFSSWYMHSDPNINRFIKYLTLFLITMLILTSANNMFQLF 141
Query: 458 IG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDIGFVLSIA*FLTHSNA*DLQQI 637
IG EGVGI+SFLLIG +GRTDANTAALQAILYNRIGDIGF+L++ F + N+ +LQQI
Sbjct: 142 IGWEGVGIMSFLLIGWWYGRTDANTAALQAILYNRIGDIGFILAMVWFSLNMNSWELQQI 201
Query: 638 FILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGPTPVSALLHSSTIVVAGVFLLI 817
NN IPL+G GKSAQFGLHP LPSA+EGPTPVSALLHSST+VVAG+FLL+
Sbjct: 202 MFSNNNDNLIPLMGLLIAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLV 261
Query: 818 RFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQ 997
RF+PL N + T LCLGA+TTLFTA+CA+TQNDIKKI+AFSTSSQLGL++VT+G+NQ
Sbjct: 262 RFHPLTTNNNFILTTMLCLGALTTLFTAICALTQNDIKKIIAFSTSSQLGLMMVTLGMNQ 321
Query: 998 PHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALT 1177
PHLAFLHIC HAFFKA+LF+CSGSIIHSL DEQDIRK+G + K +PFT++ L+IGSLALT
Sbjct: 322 PHLAFLHICTHAFFKAMLFMCSGSIIHSLADEQDIRKMGNITKIMPFTSSCLVIGSLALT 381
Query: 1178 GMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXXXXXXRIIFFAFLGKPRFPPLV 1357
GMP+LTGFYSKDLIIEA+N RII+F + KPRFPPL+
Sbjct: 382 GMPFLTGFYSKDLIIEAINTCNTNAWALLITLIATSMTAMYSMRIIYFVTMTKPRFPPLI 441
Query: 1358 LINENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTXTYPF 1486
INEN+P L+N IKRL GSIFAGF+IS T P+
Sbjct: 442 SINENDPDLMNPIKRLAFGSIFAGFVISYNIPPTSIPVLTMPW 484
>ref|XP_001478993.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
musculus].
Length = 184
Score = 276 bits (706), Expect = 3e-74
Identities = 135/166 (81%), Positives = 152/166 (91%)
Frame = +2
Query: 737 SAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAIT 916
+AIEGPTPVSALLHSSTIVVAG+FLL+RF+PL N + T LCLGA+TTLFTA+CA+T
Sbjct: 13 TAIEGPTPVSALLHSSTIVVAGIFLLVRFHPLTTNNNFILTTILCLGALTTLFTAICALT 72
Query: 917 QNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQ 1096
QNDIKKIVAFSTS+QLGLIIVT+GINQP+LAFLHIC HAFFKAILFICSGSIIHSL DEQ
Sbjct: 73 QNDIKKIVAFSTSNQLGLIIVTLGINQPYLAFLHICTHAFFKAILFICSGSIIHSLADEQ 132
Query: 1097 DIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
DIRKIG + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 133 DIRKIGNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 178
>ref|XP_003085927.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
musculus].
Length = 198
Score = 274 bits (701), Expect = 1e-73
Identities = 134/164 (81%), Positives = 150/164 (91%)
Frame = +2
Query: 743 IEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQN 922
IEGPTPVSALLHSSTIVVAG+FLL+RF+PL N + T LCLGA+TTLFTA+CA+TQN
Sbjct: 29 IEGPTPVSALLHSSTIVVAGIFLLVRFHPLTTNNNFILTTILCLGALTTLFTAICALTQN 88
Query: 923 DIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDI 1102
DIKKIVAFSTS+QLGLIIVT+GINQP+LAFLHIC HAFFKAILFICSGSIIHSL DEQDI
Sbjct: 89 DIKKIVAFSTSNQLGLIIVTLGINQPYLAFLHICTHAFFKAILFICSGSIIHSLADEQDI 148
Query: 1103 RKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
RKIG + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 149 RKIGNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 192
>ref|XP_003084632.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
musculus].
Length = 169
Score = 250 bits (638), Expect = 3e-66
Identities = 119/161 (73%), Positives = 143/161 (88%)
Frame = +2
Query: 752 PTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIK 931
P+PV ++L++ ++VAG+FLL+RF+PL N + T LCLGA+TTLFT +CA+TQNDIK
Sbjct: 3 PSPVQSILYNYIVIVAGIFLLVRFHPLTTINNYILTTILCLGALTTLFTDICALTQNDIK 62
Query: 932 KIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKI 1111
KIVAFSTSSQLGLIIVT+GINQP+LAFLHIC HAFFKA+LFICSGSIIHSL DEQ+IRKI
Sbjct: 63 KIVAFSTSSQLGLIIVTLGINQPYLAFLHICTHAFFKAMLFICSGSIIHSLADEQEIRKI 122
Query: 1112 GGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
G + K IPFT++ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 123 GNITKTIPFTSSCLVIGSLALTGMPFLTGFYSKDLIIEAIN 163
>ref|XP_003086414.1| PREDICTED: NADH-ubiquinone oxidoreductase chain 5-like [Mus
musculus].
Length = 167
Score = 244 bits (623), Expect = 1e-64
Identities = 119/150 (79%), Positives = 135/150 (90%)
Frame = +2
Query: 785 TIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKKIVAFSTSSQL 964
TIVVAG+FLL+RF+PL N + T LCLGA+TTLFTA+CA+TQNDIKKIVAFSTSSQL
Sbjct: 12 TIVVAGIFLLVRFHPLTTNNNYILTTILCLGALTTLFTAICALTQNDIKKIVAFSTSSQL 71
Query: 965 GLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIGGLYKAIPFTT 1144
GLIIVT+GINQP LAFLHIC HAFFKA+LFICSGSIIHSL DEQ+IRKIG + K IPFT+
Sbjct: 72 GLIIVTLGINQPXLAFLHICTHAFFKAMLFICSGSIIHSLADEQEIRKIGNITKTIPFTS 131
Query: 1145 TALIIGSLALTGMPYLTGFYSKDLIIEAVN 1234
+ L+IGSLALTGMP+LTGFYSKDLIIEA+N
Sbjct: 132 SCLVIGSLALTGMPFLTGFYSKDLIIEAIN 161
>ref|NP_904329.1| NADH dehydrogenase subunit 2 [Mus musculus].
Length = 345
Score = 60.5 bits (145), Expect = 4e-09
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 4/177 (2%)
Frame = +2
Query: 704 SAQFGLHP*---LPSAIEGPTPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCL 874
S + GL P LP +G L+ + +A + +LI+ YPL+ + TI L L
Sbjct: 103 SMKLGLAPFHFWLPEVTQGIPLHMGLILLTWQKIAPLSILIQIYPLLNS-----TIILML 157
Query: 875 GAITTLFT-ALCAITQNDIKKIVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAIL 1051
AIT++F A + Q ++KI+A+S+ + +G ++ + N P L L++ ++ A +
Sbjct: 158 -AITSIFMGAWGGLNQTQMRKIMAYSSIAHMGWMLAILPYN-PSLTLLNLMIYIILTAPM 215
Query: 1052 FICSGSIIHSLNDEQDIRKIGGLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLII 1222
F+ LN+ I I L+ P T + + L+L G+P LTGF K +II
Sbjct: 216 FMAL-----MLNNSMTINSISLLWNKTPAMLTMISLMLLSLGGLPPLTGFLPKWIII 267
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,890,344
Number of extensions: 908229
Number of successful extensions: 2397
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2394
Number of HSP's successfully gapped: 6
Length of query: 528
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 422
Effective length of database: 12,433,743
Effective search space: 5247039546
Effective search space used: 5247039546
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008644.1| NADH dehydrogenase subunit 5 [Sus scrofa]. 726 0.0
>ref|NP_008644.1| NADH dehydrogenase subunit 5 [Sus scrofa].
Length = 606
Score = 726 bits (1875), Expect = 0.0
Identities = 382/483 (79%), Positives = 408/483 (84%)
Frame = +2
Query: 35 INPFASXXXXXXXXXXXXXXXSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLIFIHTGQE 214
+NPFAS SNSNIYKTNLYPNYVKTTVSYAFTLSLVPLL+F+HTGQE
Sbjct: 1 MNPFASLTLTTLIILTIPIMMSNSNIYKTNLYPNYVKTTVSYAFTLSLVPLLMFMHTGQE 60
Query: 215 IIISN*H*ITLQTVELSLSFKIDYFSVIFIPVALFVT*SIIEFSI*YIHSDPFINRFFKY 394
+IISN H +TLQTVELSLSFK+DYFSV+FIPVALFVT SI+EFS+ Y+HSDPFINRFFKY
Sbjct: 61 MIISNWHWMTLQTVELSLSFKMDYFSVMFIPVALFVTWSIMEFSMWYMHSDPFINRFFKY 120
Query: 395 XXXXXXXXXXXVTANNLFQLFIG*EGVGIISFLLIG**HGRTDANTAALQAILYNRIGDI 574
VTANNLFQLFIG EGVGI+SFLLIG HGRTDANTAALQAILYNRIGDI
Sbjct: 121 LVLFLITMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDI 180
Query: 575 GFVLSIA*FLTHSNA*DLQQIFILNNECPNIPLIGXXXXXXGKSAQFGLHP*LPSAIEGP 754
GFVLS+A FLTHSNA DLQQIF+LNNECPN+PLIG GKSAQFGLHP LPSA+EGP
Sbjct: 181 GFVLSMAWFLTHSNAWDLQQIFMLNNECPNMPLIGLLLAAAGKSAQFGLHPWLPSAMEGP 240
Query: 755 TPVSALLHSSTIVVAGVFLLIRFYPLIETNKLVQTITLCLGAITTLFTALCAITQNDIKK 934
TPVSALLHSST+VVAGVFLLIRFYPL+ETNKLVQT+TLCLGAITTLFTALCAITQNDIKK
Sbjct: 241 TPVSALLHSSTMVVAGVFLLIRFYPLMETNKLVQTMTLCLGAITTLFTALCAITQNDIKK 300
Query: 935 IVAFSTSSQLGLIIVTIGINQPHLAFLHICMHAFFKAILFICSGSIIHSLNDEQDIRKIG 1114
IVAFSTSSQLGL++VTIGINQPHLAFLHICMHAFFKA+LF+CSGSIIHSLNDEQDIRK+G
Sbjct: 301 IVAFSTSSQLGLMMVTIGINQPHLAFLHICMHAFFKAMLFMCSGSIIHSLNDEQDIRKMG 360
Query: 1115 GLYKAIPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNISXXXXXXXXXXXXXXXXXX 1294
GLYKA+PFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVN+S
Sbjct: 361 GLYKAMPFTTTALIIGSLALTGMPYLTGFYSKDLIIEAVNMSYTNAWALLMTLIATSLTA 420
Query: 1295 XXXXRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISTTSHXLQYQTX 1474
RIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIIS +
Sbjct: 421 AYSTRIIFFAFLGKPRFPPLVLINENNPLLINSIKRLLIGSIFAGFIISNNIPPMTVPNT 480
Query: 1475 TYP 1483
T P
Sbjct: 481 TMP 483
Score = 59.3 bits (142), Expect = 6e-09
Identities = 27/36 (75%), Positives = 34/36 (94%)
Frame = +1
Query: 1441 HNIPPITVPNXHIPLYIKITALIVTIIGFILALELN 1548
+NIPP+TVPN +PLY+K+TALIVTI+GF+LALELN
Sbjct: 470 NNIPPMTVPNTTMPLYMKMTALIVTIMGFMLALELN 505
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,886,609
Number of extensions: 650507
Number of successful extensions: 1603
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1602
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 424
Effective length of database: 8,754,644
Effective search space: 3711969056
Effective search space used: 3711969056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002773
(1585 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1818 0.0
Sscrofa_ChrX 961 0.0
Sscrofa_Chr08 961 0.0
Sscrofa_Chr17 882 0.0
Sscrofa_Chr04 535 e-149
gb|GL894051.2| Sus scrofa unplaced genomic scaffold ChrUScaf1935 218 7e-54
Sscrofa_Chr13 151 1e-33
Sscrofa_Chr03 131 1e-27
Sscrofa_Chr12 103 3e-19
Sscrofa_Chr01 103 3e-19
>Sscrofa_Chr02
|| Length = 162569375
Score = 1818 bits (917), Expect = 0.0
Identities = 1392/1552 (89%), Gaps = 5/1552 (0%)
Strand = Plus / Minus
Query: 1 aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||
Sbjct: 96266777 aaccaaaaaattggtgcaactccagataaaagtaataaacttattcgccccactcgcatt 96266718
Query: 61 aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
||| ||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 96266717 aactacattaactattctaatcataccaattataatatccaactcaaacatctacaaaac 96266658
Query: 121 taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
||||| ||||| ||||| ||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 96266657 caacctctaccccaactatgtaaaaaccgctgtatcctgtgccttcactctcagcctagt 96266598
Query: 181 ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
|||| || |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 96266597 ccccctattaatatttatccacacaggccaagaaataattatttcaaactgacactgaat 96266538
Query: 241 aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
|||| |||| ||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct: 96266537 aaccttacaaaccgtagaactatcccttagcttcaaaatagattatttctcagtaatatt 96266478
Query: 301 cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
|| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct: 96266477 cactcccgtagcactatttttcacatgatcaatcatagaattttccatatgatacataca 96266418
Query: 361 ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
| | ||||||||||| || |||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 96266417 cgcggaccccttcattaatcgattctttaaatacctattactattcttaattactataat 96266358
Query: 421 aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
||| |||||||| || |||||| |||| ||||| || |||||||| ||| ||||||||||
Sbjct: 96266357 aattctcgtaactgctaacaacgtctttcaacttttcatcggatgggaaagcgtaggaat 96266298
Query: 481 catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
|| |||||| | |||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct: 96266297 tatgtcattcttactaatcggatgatggcatggacgaacagacgccaacacagccgcact 96266238
Query: 541 acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct: 96266237 acaggcaatcctatacaaccgcatcggagatattggattcgtcctatccatggcatgatt 96266178
Query: 601 cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
|||| ||||||||||||||||||| | ||||||||||||| ||||| |||||||||||
Sbjct: 96266177 cctatcccactcaaacgcatgagacttccaacaaatctttaatctaaataatgaatgccc 96266118
Query: 661 aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |
Sbjct: 96266117 aaacataccattaataggtctgctcctagctgcagcaggaaaatcagctcaattcggatt 96266058
Query: 721 acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
||| || ||| | |||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct: 96266057 acacccttgactaccctcagcaatagaaggcccaactcctgtatcagcactactgcactc 96265998
Query: 781 cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
||| ||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||||||
Sbjct: 96265997 cagcacaatagtagtggcaggagtattcctactcatccgcttctactccttgatagaaac 96265938
Query: 841 taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
|| |||||||| |||||||| ||||||||||||||||| || |||||| ||||||||||
Sbjct: 96265937 caataaactagtccaaactatgacactatgcctaggagccattaccaccctatttacagc 96265878
Query: 901 actatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagcca 960
|||||||||| |||||||||||||||| | ||||||||||||||||||||||
Sbjct: 96265877 actatgtgcagtcacacaaaatgatattaaaaaaattgtagccttctcaacttcaagccg 96265818
Query: 961 actaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacat 1020
|||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 96265817 actaggtctaataatagtgacaatcggcattaaccaaccccacctggcatttcttcacat 96265758
Query: 1021 ctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacag 1080
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 96265757 ctgcatacatgctttcttcaaagcaatactattcatatgttccggatccattatccacag 96265698
Query: 1081 cctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcac 1140
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct: 96265697 cctcaatgacgaacaagacatccgaaagataggcggactgtacaaagcaataccatttac 96265638
Query: 1141 aacaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggatt 1200
||||||||||||||| ||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct: 96265637 aacaacagcactaatcattggaaacctagcattaacaggaatgccttacctcacaggatt 96265578
Query: 1201 ctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccct 1260
|||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||
Sbjct: 96265577 ttactcaaaagaccttatcattgaagcagcaaacacattctatacaaacgcctgagccct 96265518
Query: 1261 actaataacattaattgccacatccctaaccgctgcctac----agcactcgaattatct 1316
| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 96265517 attaataacattaattgccacatccctaaccgctgcttacattaagtactcgaattatct 96265458
Query: 1317 tctttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacc 1376
|||||||| ||||||| | ||||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 96265457 tctttgcactcctaggacagccacgtttctcacccctagtcttaattaatgaaaacaacc 96265398
Query: 1377 ccctactaattaactctattaaacgccttttaatcggaagcattttcgctggctttatca 1436
|| |||||||||||||||| |||| ||||||||||||||||| ||||| ||||||||||
Sbjct: 96265397 ccttactaattaactctatccaacgtcttttaatcggaagcatcttcgccggctttatca 96265338
Query: 1437 tctcc-acaacatcccaccnattacagtaccaaacanncacatacccctttacataaaaa 1495
||||| ||||||| || || || ||| || |||||| |||||||||| |||||||
Sbjct: 96265337 tctccaacaacattccgccaataacaatatcaaacatgacaatacccctttgtataaaaa 96265278
Query: 1496 taacagccctaatcgtaaccatcataggattcatactagccctagagctaaa 1547
||||||||||||||||||| |||||||| |||||| |||||||||| |||||
Sbjct: 96265277 taacagccctaatcgtaactatcataggcttcatattagccctagaactaaa 96265226
Score = 1766 bits (891), Expect = 0.0
Identities = 1386/1549 (89%), Gaps = 4/1549 (0%)
Strand = Plus / Plus
Query: 1 aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||
Sbjct: 120058326 aaccaaaaaattggtgcaactccaaataaaagtaataaacctattcgccccacttgtatt 120058385
Query: 61 aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 120058386 aactacattaactattctaaccataccaattataatatccaactcaaacatctacaaaac 120058445
Query: 121 taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
||||||||||| ||||| ||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 120058446 caacctttaccccaactatgtaaaaaccactgtatcctgtgccttcactctcagtttagt 120058505
Query: 181 ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct: 120058506 ccccttattaatatttatccacacaggccaagaaataattatttcaaactgacactgaat 120058565
Query: 241 aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
||| |||| ||||||||||| || |||||||| |||||||| || ||||||||||||||
Sbjct: 120058566 gaccttacaaaccgtagaactatcacttagcttcaaaatagattacttctcagtaatatt 120058625
Query: 301 cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
|| ||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||
Sbjct: 120058626 cactcccgtagcactatttgtcacatgatcaattatagagttttccatatgatacatgca 120058685
Query: 361 ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
||| || ||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||
Sbjct: 120058686 ctcgga-cccttcatcaatcaattctttaagtacctattactattcttaattactataat 120058744
Query: 421 aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
||| ||||||||||| || |||||||| ||||| ||| | |||||||| |||||||||||
Sbjct: 120058745 aattctcgtaaccgctaataacctctttcaacttttttttggatgagagggcgtaggaat 120058804
Query: 481 catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
||| |||||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||
Sbjct: 120058805 catgtcattcctactaattggatgatggcatggacgaacagatgccaacacagccgcact 120058864
Query: 541 acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
||| |||||||||||||| || || ||||| |||||||| ||| |||| || ||||||||
Sbjct: 120058865 acaggcaatcctatacaatcgtattggagatattggattcgtcttatctatggcatgatt 120058924
Query: 601 cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
|||| | |||||||| |||||||| | |||||||||||||||||||| || ||||| ||
Sbjct: 120058925 cctatctcactcaaatgcatgagacttccaacaaatctttatactaaataacgaatgtcc 120058984
Query: 661 aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 120058985 aaacataccattaataggtctactcctagctgcagcaggaaaatcagctcaattcggact 120059044
Query: 721 acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
||| || ||| | |||||||||| ||||||||||||||| || |||||| |||| |||||
Sbjct: 120059045 acacccttgactaccctcagcaa-agaaggcccaactcctgtgtcagcactactgcactc 120059103
Query: 781 cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 120059104 cagcacaatagtagtagcaggagtatttctactcatccgcttctaccccttgatagaaaa 120059163
Query: 841 taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
|| ||| |||| |||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct: 120059164 caataaattagtccaaactatgacactatgtctaggagccattaccaccttatttacagc 120059223
Query: 901 actatgtgcaatcacacaaaatgata-tcnnnnnnntcgtagccttctcaacttcaagcc 959
|||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 120059224 actatgtgcaatcacacaaaatgatattaaaaaaaattgtagccttctcaacttcaagcc 120059283
Query: 960 aactaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcaca 1019
||||| | || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 120059284 aactaagtttaataatagtgacaatcggcattaaccaaccccacctggcatttcttcaca 120059343
Query: 1020 tctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccaca 1079
|||| || || |||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 120059344 tctgtatacatactttcttcaaagcaatactattcatatgttccggatccattattcaca 120059403
Query: 1080 gcctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattca 1139
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct: 120059404 gcctcaatgacgaacaagacatccgaaagataggcggactatataaagcaataccattta 120059463
Query: 1140 caacaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggat 1199
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 120059464 caacaacagcactaatcattggaagcctagcattaacaggaatgccttacctcacaggat 120059523
Query: 1200 tctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccc 1259
| |||||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||
Sbjct: 120059524 tttactcaaaagaccttatcattgaagcagcaaacacatcctatacaaacgcctgagccc 120059583
Query: 1260 tactaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttct 1319
|| |||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||||
Sbjct: 120059584 tattaataacattaattgccacatctctaactgctgcttacagttcttgaattatcttct 120059643
Query: 1320 ttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataaccccc 1379
||||| ||||||| | ||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 120059644 ttgcactcctaggacagccacgtttctcacccctaatcttaattaatgaaaataacccct 120059703
Query: 1380 tactaattaactctattaaacgccttttaatcggaagcattttcgctggctttatcatct 1439
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 120059704 tactaattaactctatcaaacgccttttaatcggaagcatcttcgccggctttatcatct 120059763
Query: 1440 cc-acaacatcccaccnattacagtaccaaacanncacatacccctttacataaaaataa 1498
|| ||||||||||||| || ||| ||||||||| ||||||||||| ||||||||||
Sbjct: 120059764 ccaacaacatcccaccaataacaataccaaacatgacaatacccctttatataaaaataa 120059823
Query: 1499 cagccctaatcgtaaccatcataggattcatactagccctagagctaaa 1547
||||||| |||||||| || ||||| || ||| |||||||||| |||||
Sbjct: 120059824 cagccctgatcgtaactattataggctttatattagccctagaactaaa 120059872
>Sscrofa_ChrX
|| Length = 144288218
Score = 961 bits (485), Expect = 0.0
Identities = 1186/1420 (83%), Gaps = 9/1420 (0%)
Strand = Plus / Plus
Query: 1 aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
||||||| ||||||||||| ||||||||||||||||||||| ||| |||| |||| || |
Sbjct: 23484933 aaccaaagaattggtgcaattccaaataaaagtaataaacctatttgccttactcgcact 23484992
Query: 61 aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
|||||||||| ||||||| || || ||||| |||||||||||||| ||||||||||||||
Sbjct: 23484993 aaccacactagctattctcacaataccaatcataatatccaactctaacatctacaaaac 23485052
Query: 121 taacctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagt 180
| |||| |||||||| ||||||||||||||||| |||||| ||||||| | |||||| |
Sbjct: 23485053 tgacctgtaccctaattacgtaaaaaccaccgtgtcctacaccttcacaattagcctaat 23485112
Query: 181 ccccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaat 240
|||| || |||||||||| |||||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 23485113 ccccatattaatatttatccacacaggtcaagaaataattatctcaaattgacactgaat 23485172
Query: 241 aaccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
| |||| || || |||||||| || |||||||| || ||||| || |||||| |||||||
Sbjct: 23485173 agccctccaaactgtagaactgtcacttagcttcaacatagattacttctcaataatatt 23485232
Query: 301 cattcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacataca 360
| || || ||| | || |||||||||||||| ||||||||||||||| || | || ||
Sbjct: 23485233 tgtcccagtggcattgtttgtcacatgatcaatcatagaattctccataggacatatgca 23485292
Query: 361 ctcagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataat 420
||||||||| ||||| ||||||||||| || ||| ||||||||||| | || || |||||
Sbjct: 23485293 ctcagaccctttcattaaccgattcttcaagtacttactactattccttattaccataat 23485352
Query: 421 aatcctcgtaaccgccaacaacctcttccaactctttatcggatgagaaggcgtaggaat 480
||||||||||||| | ||||| | |||||||| ||||| | ||||| || ||||||||
Sbjct: 23485353 aatcctcgtaaccactaacaattttttccaactttttattagctgagagggtgtaggaat 23485412
Query: 481 catatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcact 540
||||| ||||| || || ||||| ||||| |||| |||||| || ||||||||||||||
Sbjct: 23485413 tatatctttcctactcattggatggtgacatggacaaacagatgctaacacagctgcact 23485472
Query: 541 acaagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgatt 600
||||||||||||| | |||||||| | |||||| ||||| |||| || |||||| ||||
Sbjct: 23485473 acaagcaatcctagataaccgcattgaagacatcggattcatcctgtcaatagcaagatt 23485532
Query: 601 cctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccc 660
|| | |||||||| |||||||| | |||||||| | |||||||||| | | |||||
Sbjct: 23485533 tctgtctcactcaaatgcatgagacttccaacaaatttccatactaaacagtaattgccc 23485592
Query: 661 aaacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggact 720
| |||||||| | || ||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct: 23485593 agacataccactgataggcctactcctggctgcagcaggaaaatgagcccaattcggact 23485652
Query: 721 acatccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactc 780
||| || ||| | | ||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct: 23485653 acaaccatgactacgctcagcaatagaaggtccaaccccagtatcagcattactccactc 23485712
Query: 781 cagtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaac 840
|| |||||||| |||||||| || || ||||| || | |||||||| ||| |||||
Sbjct: 23485713 aagcacaatagtggtagcaggagttttcctactaatttgattctacccactaacagaaaa 23485772
Query: 841 taacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagc 900
|||||||||| | ||||| || |||||||||||| | || || |||||| | || || ||
Sbjct: 23485773 taacaaactaatccaaacaatgacactatgcctaagggccattaccaccctcttcacggc 23485832
Query: 901 actatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagcca 960
|||||| || | || ||||| ||||| || ||||||||| ||||||||||||
Sbjct: 23485833 actatgcgcccttacccaaaacaatatcaaaaaaatcatagccttcttaacttcaagcca 23485892
Query: 961 actaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacat 1020
|| ||| | ||| |||| ||||| ||||||||||| ||||| |||||||| || || ||
Sbjct: 23485893 gctgggcctaatattagtaacaattggcatcaaccagccccatctagcattcctccatat 23485952
Query: 1021 ctgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacag 1080
||||| || || ||||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 23485953 ctgcacacatgcattctttaaagcaatattattcatatgctccggatccattattcacag 23486012
Query: 1081 cctcaatgacgaacaaga-catccgaaaaataggcggactgtataaagcaataccattca 1139
||||||||| |||||||| ||| ||||||||||| ||||||| |||||||||||||| |
Sbjct: 23486013 cctcaatgatgaacaagataatctgaaaaataggcagactgtacaaagcaataccattta 23486072
Query: 1140 caacaa-cagcactaattattggaagcctggcattaacaggaatgccttatctcacagga 1198
|||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23486073 caacaaccagcgctaatcgttggaagcctggcattaacaggaataccttatctcacagga 23486132
Query: 1199 ttctactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagcc 1258
|| |||||||||||||| ||||||||||||| ||||| ||| || |||||||||| ||||
Sbjct: 23486133 ttttactcaaaagacctaatcattgaagcagcaaatacatcgtatacaaacgcctaagcc 23486192
Query: 1259 ctactaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttc 1318
|||||||||||| | ||||||||||||||||| | | |||| ||||| || |||
Sbjct: 23486193 ctactaataacactcattgccacatccctaacag-------ccgcacccgaatcattttc 23486245
Query: 1319 tttgcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacccc 1378
|| ||| | ||||| ||||||| ||| || | ||||| ||||||||||||||||||||
Sbjct: 23486246 ttcgcacttctaggataaccacgcttcttacgcttagtcttaattaatgaaaataacccc 23486305
Query: 1379 ctactaattaactctattaaacgccttttaatcggaagca 1418
||| ||||||| ||||||||| ||||| |||| |||||||
Sbjct: 23486306 ctattaattaattctattaaatgccttctaattggaagca 23486345
>Sscrofa_Chr08
|| Length = 148491826
Score = 961 bits (485), Expect = 0.0
Identities = 910/1051 (86%), Gaps = 3/1051 (0%)
Strand = Plus / Minus
Query: 500 ggatgatgacacggacgaacagacgccaacacagctgcactacaagcaatcctatacaac 559
||||||||||| |||||||||||| ||||||||| ||||| |||||||| ||||||||
Sbjct: 127844678 ggatgatgacatggacgaacagacatcaacacagccgcactgcaagcaattctatacaat 127844619
Query: 560 cgcatcggagacattggatttgtcctatccatagcatgattcctaacccactcaaacgca 619
||||| ||||| || || || ||| ||||||| |||||||||||| |||| ||| || ||
Sbjct: 127844618 cgcattggagatatcgggttcgtcttatccatggcatgattcctatcccattcagac-ca 127844560
Query: 620 tgagatcttcaacaaatctttatactaaacaatgaatgcccaaacataccattaatcggc 679
||||| | ||||||||||||||||||||||| |||||||||| | ||||||||| |||
Sbjct: 127844559 tgagacttccaacaaatctttatactaaacaacaaatgcccaaatacaccattaataggc 127844500
Query: 680 ctactcctagctgcagcaggaaaatcagctcaattcggactacatccctgattgccctca 739
|||||| | || |||||||||||||||||||||||||||| || || ||| | ||||||
Sbjct: 127844499 ctactcttggccacagcaggaaaatcagctcaattcggactgcacccttgactaccctca 127844440
Query: 740 gcaatagaaggcccaactcccgtatcagcattactacactccagtacaatagtagtagca 799
||||||||||||||||| || ||||||||| |||| ||||| || |||||||||||||||
Sbjct: 127844439 gcaatagaaggcccaaccccagtatcagcactactgcactctagcacaatagtagtagca 127844380
Query: 800 ggggtatttctactcatccgcttctaccccttaatagaaactaacaaactagttcaaact 859
|| ||||| |||| |||||||||||||| ||||||||| || ||||||| |||||||
Sbjct: 127844379 ggagtattcttacttatccgcttctaccctctaatagaaaacaataaactagatcaaact 127844320
Query: 860 ataacactatgcctaggagctatcaccaccttatttacagcactatgtgcaatcacacaa 919
|||||||||||||||||||| || |||||||| |||| ||||||||||||||||||| ||
Sbjct: 127844319 ataacactatgcctaggagccattaccaccttgtttatagcactatgtgcaatcacataa 127844260
Query: 920 aatgatatcnnnnnnntcgtagccttctcaacttcaagccaactaggcttgataatagtg 979
||||| || | ||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 127844259 aatgacattaaaaaaattgtagccttctcaacttcaagccagctaggcctaataatagtg 127844200
Query: 980 acaatcggcatcaaccaaccccacctagcatttcttcacatctgcatgcacgctttcttc 1039
||||| |||||||||||||||||||||||||| |||||||||||||| || || ||||||
Sbjct: 127844199 acaattggcatcaaccaaccccacctagcattccttcacatctgcatacatgcattcttc 127844140
Query: 1040 aaagcaatactattcatatgctccggatccattatccacagcctcaatgacgaacaagac 1099
||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||
Sbjct: 127844139 aaagcaatattattcatatgctccggatccatcattcacagcctcaatgacgaaaaagac 127844080
Query: 1100 atccgaaaaataggcggactgtataaagcaataccattcacaacaacagcactaattatt 1159
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct: 127844079 atccgaaaaataggcggactatataaagcaataccatttacaacaacagcactaatcatt 127844020
Query: 1160 ggaagcctggcattaacaggaatgccttatctcacaggattctactcaaaagaccttatc 1219
|||||||| |||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct: 127844019 ggaagcctagcattaacaggaataccctaccttacaggattctactcaaaagaccttatc 127843960
Query: 1220 attgaagcagtaaatatatcctacacaaacgcctgagccctactaataacattaattgcc 1279
|||||||||| ||| | |||||| ||||||||||||||||| ||||||||||||| ||
Sbjct: 127843959 attgaagcagcaaacacatcctatacaaacgcctgagccctgttaataacattaatcacc 127843900
Query: 1280 acatccctaaccgctgcctacagcactcgaattatcttctttgcattcctagggaaacca 1339
||||||||||| || | ||||| ||||||||||| ||||||||| |||| || |||||
Sbjct: 127843899 acatccctaactgccgtttacagtactcgaattattttctttgcactcctgggacaacca 127843840
Query: 1340 cgtttcccacccctagtcctaattaatgaaaataaccccctactaattaactctattaaa 1399
|||||| |||||| |||||||||||||||| |||||| |||| ||||||||||| |||
Sbjct: 127843839 cgtttcttgcccctaatcctaattaatgaaaacaaccccatactgattaactctatcaaa 127843780
Query: 1400 cgccttttaatcggaagcattttcgctggctttatcatctcc-acaacatcccaccnatt 1458
||| | | ||| ||||||| ||||| ||||| |||||||| ||||||||||||| ||
Sbjct: 127843779 tgcc-tctgatcagaagcatcttcgccggcttcctcatctccaacaacatcccaccaata 127843721
Query: 1459 acagtaccaaacanncacatacccctttacataaaaataacagccctaatcgtaaccatc 1518
||||||||| ||| |||||||||||||| |||||||||| || | ||||||||
Sbjct: 127843720 acagtaccacacatgacaatacccctttacatgaaaataacagttctgactgtaaccatt 127843661
Query: 1519 ataggattcatactagccctagagctaaaca 1549
||||| || |||||||| ||||| |||||||
Sbjct: 127843660 ataggctttatactagctctagaactaaaca 127843630
Score = 163 bits (82), Expect = 4e-37
Identities = 193/230 (83%)
Strand = Plus / Plus
Query: 1203 actcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctac 1262
|||||||||| ||||||||||| |||| ||| | |||||||||||| || ||||||||||
Sbjct: 113051354 actcaaaagatcttatcattgaggcagcaaacacatcctacacaaatgcttgagccctac 113051413
Query: 1263 taataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttctttg 1322
|||||||| |||| || |||||||||||| | | ||||||||| |||||||| |||||||
Sbjct: 113051414 taataacactaatcgctacatccctaaccaccgtctacagcacccgaattattttctttg 113051473
Query: 1323 cattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataaccccctac 1382
|| | ||||| ||||| | || ||| |||||| ||||||||||| || || || ||
Sbjct: 113051474 cacttctaggacaaccatgcttttcactcctagttctaattaatgagaacaatcctttat 113051533
Query: 1383 taattaactctattaaacgccttttaatcggaagcattttcgctggcttt 1432
|||| |||||||| ||||||||| ||||||||||||| || || ||||||
Sbjct: 113051534 taatcaactctatcaaacgccttctaatcggaagcatcttggccggcttt 113051583
>Sscrofa_Chr17
|| Length = 69701581
Score = 882 bits (445), Expect = 0.0
Identities = 1161/1398 (83%), Gaps = 3/1398 (0%)
Strand = Plus / Plus
Query: 3 ccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacattaa 62
||||| || |||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct: 15220649 ccaaagaagtggtgcaactccaaataaaagtaataaacctatatgcctcactcacactaa 15220708
Query: 63 ccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaacta 122
|||||||| |||||| || || ||||| ||||||| || ||| |||||||||||||| |
Sbjct: 15220709 ccacactagctattcccacaataccaatcataatatacatctctaacatctacaaaacca 15220768
Query: 123 acctttaccctaactacgtaaaaaccaccgtatcctacgccttcactctcagcctagtcc 182
||| || || | || |||||||||| | ||||||||||||||||| | |||||| |||
Sbjct: 15220769 accaatatccccattatgtaaaaaccaacatatcctacgccttcactattagcctaatcc 15220828
Query: 183 ccttactaatatttatacacacaggccaagaaataatcatttcaaactgacattgaataa 242
| || ||||||| || |||||||| |||||||||||||| ||||||||||| ||||| |
Sbjct: 15220829 caatattaatattcatccacacaggtcaagaaataatcatctcaaactgacactgaatga 15220888
Query: 243 ccctacagaccgtagaactctctcttagctttaaaatagactatttctcagtaatattca 302
|||| ||||| |||||||| || ||| |||| || ||||| | |||||| |||||| ||
Sbjct: 15220889 ccctccagactgtagaactgtcactttgcttcaagatagatgacttctcaataatatgca 15220948
Query: 303 ttcccgtagcactattcgtcacatgatcaattatagaattctccatatgatacatacact 362
|||| |||||| |||| |||||||| || || |||||||||||||||||||| |||||||
Sbjct: 15220949 ttccagtagcattatttgtcacatggtcgatcatagaattctccatatgatatatacact 15221008
Query: 363 cagaccccttcatcaaccgattctttaaatacctactactattcttaatcactataataa 422
||||||| || || ||||||||||| || ||||||||| ||||| | || ||||||||||
Sbjct: 15221009 cagacccttttattaaccgattcttcaagtacctactattattcgtcattactataataa 15221068
Query: 423 tcctcgtaaccgccaacaacctcttccaactctttatcggatgagaag-gcgtaggaatc 481
||||||| ||||| ||||| | |||||||| || || || || |||| | ||||||||
Sbjct: 15221069 tcctcgtcaccgctaacaatttattccaacttttcattggctg-gaagcgggtaggaatt 15221127
Query: 482 atatcattcctgctaatcggatgatgacacggacgaacagacgccaacacagctgcacta 541
||||| ||||| ||||||||||| || ||||||| |||||| ||||||||||| ||||||
Sbjct: 15221128 atatccttcctactaatcggatggtggcacggaccaacagatgccaacacagccgcacta 15221187
Query: 542 caagcaatcctatacaaccgcatcggagacattggatttgtcctatccatagcatgattc 601
|| |||||||| || ||||| ||| ||||||| |||||||||||||| |||||||||||
Sbjct: 15221188 caggcaatcctctataaccgtatcagagacatcggatttgtcctatcaatagcatgattt 15221247
Query: 602 ctaacccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgccca 661
|| |||||||||| |||||||| | ||||||||||| |||||||||| | | ||||||
Sbjct: 15221248 ctgtcccactcaaatgcatgagacgtccaacaaatcttcatactaaacagtaactgccca 15221307
Query: 662 aacataccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggacta 721
|||||||| |||| || |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 15221308 gacataccactaatagggttactcctagctgcagcaggaaaatcagcccaatttggacta 15221367
Query: 722 catccctgattgccctcagcaatagaaggcccaactcccgtatcagcattactacactcc 781
|| || ||| |||| ||||||| ||| || || || || |||||||||||||| ||| |
Sbjct: 15221368 cacccatgactgccttcagcaacagagggtcccaccccagtatcagcattactccaccca 15221427
Query: 782 agtacaatagtagtagcaggggtatttctactcatccgcttctaccccttaatagaaact 841
| |||||||| |||||||| ||||| ||||| || |||| |||||| || ||||||
Sbjct: 15221428 aacacaatagtggtagcaggtgtattcctactaatttgcttttaccccctactagaaaac 15221487
Query: 842 aacaaactagttcaaactataacactatgcctaggagctatcaccaccttatttacagca 901
| |||||| | ||||| || |||||||||||||| || | || ||| | || | ||||
Sbjct: 15221488 agcaaacttatccaaacaatgacactatgcctaggggccactactacccttttcatagca 15221547
Query: 902 ctatgtgcaatcacacaaaatgatatcnnnnnnntcgtagccttctcaacttcaagccaa 961
||||| || | || ||||| ||||| | ||||| ||||||||||||||||||
Sbjct: 15221548 ctatgcgcccttacccaaaacgatataaaaaaaattgtagctttctcaacttcaagccaa 15221607
Query: 962 ctaggcttgataatagtgacaatcggcatcaaccaaccccacctagcatttcttcacatc 1021
|| ||| | |||||||| ||||| ||||||||||| ||| | |||||||| | || |||
Sbjct: 15221608 ctgggcctaataatagtaacaattggcatcaaccagccctatctagcattcttccatatc 15221667
Query: 1022 tgcatgcacgctttcttcaaagcaatactattcatatgctccggatccattatccacagc 1081
|||| || || |||| ||||| | | | ||||| ||||||||||||||||||||||||
Sbjct: 15221668 tgcacacatgcattctctaaagccaaattgttcatgtgctccggatccattatccacagc 15221727
Query: 1082 ctcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcaca 1141
||||| || || |||||||||||| | || ||| ||||||| |||||||| ||||| ||
Sbjct: 15221728 ctcaacgatgagcaagacatccgagagatgggcagactgtacaaagcaatgccatttact 15221787
Query: 1142 acaacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggattc 1201
|||| |||||||||| |||||| ||| |||||||||||||| || ||||||||||||||
Sbjct: 15221788 acaatagcactaattgttggaaacctagcattaacaggaataccctatctcacaggattt 15221847
Query: 1202 tactcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagcccta 1261
|||||||||||||| || |||||| ||| ||||| ||| || ||||||||||||||||||
Sbjct: 15221848 tactcaaaagacctaattattgaaacagcaaatacatcgtatacaaacgcctgagcccta 15221907
Query: 1262 ctaataacattaattgccacatccctaaccgctgcctacagcactcgaattatcttcttt 1321
||||| ||| | |||||||||||||||| |||| ||| ||||| | ||| || |||||
Sbjct: 15221908 ctaatgacactcgttgccacatccctaacagctgtctatagcacccaaatcattttcttc 15221967
Query: 1322 gcattcctagggaaaccacgtttcccacccctagtcctaattaatgaaaataacccccta 1381
||| | ||||| ||||||||||| ||||| ||||||||||||| |||||||| ||||||
Sbjct: 15221968 gcacttctaggacaaccacgtttctcacccttagtcctaattaacgaaaataa-ccccta 15222026
Query: 1382 ctaattaactctattaaa 1399
|||||||||| ||||||
Sbjct: 15222027 ttaattaactccattaaa 15222044
Score = 167 bits (84), Expect = 2e-38
Identities = 111/120 (92%)
Strand = Plus / Minus
Query: 1304 actcgaattatcttctttgcattcctagggaaaccacgtttcccacccctagtcctaatt 1363
||||||||||||||||||||| ||||||| | ||||||||||||||||||||| ||||
Sbjct: 55304126 actcgaattatcttctttgcactcctaggacagccacgtttcccacccctagtcttaatc 55304067
Query: 1364 aatgaaaataaccccctactaattaactctattaaacgccttttaatcggaagcattttc 1423
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 55304066 aatgaaaacaaccccttactaattaactctattaaacgtcttttaatcggaagcattttc 55304007
>Sscrofa_Chr04
|| Length = 143465943
Score = 535 bits (270), Expect = e-149
Identities = 363/394 (92%)
Strand = Plus / Plus
Query: 104 tcaaacatctacaaaactaacctttaccctaactacgtaaaaaccaccgtatcctacgcc 163
||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||| ||||
Sbjct: 97827638 tcaaacatctacaaaaccaacctctaccccaactacgtgaaaaccaccgtatcctgcgcc 97827697
Query: 164 ttcactctcagcctagtccccttactaatatttatacacacaggccaagaaataatcatt 223
||||| |||||||| |||||||| |||||||||| |||||||||||||||||||| |||
Sbjct: 97827698 ttcaccctcagcctgatccccttattaatatttattcacacaggccaagaaataattatt 97827757
Query: 224 tcaaactgacattgaataaccctacagaccgtagaactctctcttagctttaaaatagac 283
||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||||||
Sbjct: 97827758 tcaaactgacactgaataaccctacaaaccgtagaactttcccttagcttcaaaatagac 97827817
Query: 284 tatttctcagtaatattcattcccgtagcactattcgtcacatgatcaattatagaattc 343
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 97827818 tatttctcagtaatatttactcccgtagcactattcgtcacatgatcaattatagaattc 97827877
Query: 344 tccatatgatacatacactcagaccccttcatcaaccgattctttaaatacctactacta 403
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 97827878 tccatatgatacatacactcagaccccttcatcaatcgattctttaaatacctattacta 97827937
Query: 404 ttcttaatcactataataatcctcgtaaccgccaacaacctcttccaactctttatcgga 463
|||||||| |||||||||||||||||||| | ||||| ||||| |||||||| ||||||
Sbjct: 97827938 ttcttaattactataataatcctcgtaactggtaacaatctctttcaactcttcatcgga 97827997
Query: 464 tgagaaggcgtaggaatcatatcattcctgctaa 497
|| ||||||||||||||||| || ||| ||||||
Sbjct: 97827998 tgggaaggcgtaggaatcatgtcgttcttgctaa 97828031
Score = 161 bits (81), Expect = 1e-36
Identities = 180/213 (84%)
Strand = Plus / Plus
Query: 1213 ccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctactaataacatt 1272
|||||| |||||||||| ||| | |||||||||||| || |||||||| ||||||||| |
Sbjct: 63139366 ccttattattgaagcagcaaacacatcctacacaaatgcttgagccctgctaataacact 63139425
Query: 1273 aattgccacatccctaaccgctgcctacagcactcgaattatcttctttgcattcctagg 1332
||| |||||||| |||||||| | ||| ||||| ||||| || |||||||| |||||||
Sbjct: 63139426 aatcgccacatctctaaccgccgtctatagcacccgaatcattttctttgcgctcctagg 63139485
Query: 1333 gaaaccacgtttcccacccctagtcctaattaatgaaaataaccccctactaattaactc 1392
|||| |||||| ||||||| |||||||||||||||||||| || ||| |||| |||||
Sbjct: 63139486 acaaccgcgtttctcacccctggtcctaattaatgaaaataatcctctattaatcaactc 63139545
Query: 1393 tattaaacgccttttaatcggaagcattttcgc 1425
||| |||||||| | || |||||||| |||||
Sbjct: 63139546 tatcaaacgcctcctgattggaagcatcttcgc 63139578
>gb|GL894051.2| Sus scrofa unplaced genomic scaffold ChrUScaf1935
Length = 119265
Score = 218 bits (110), Expect = 7e-54
Identities = 176/198 (88%)
Strand = Plus / Plus
Query: 1083 tcaatgacgaacaagacatccgaaaaataggcggactgtataaagcaataccattcacaa 1142
||||||| || ||||| |||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 74524 tcaatgatgagcaagatatccgaaagataggcggactatacaaagcaataccattcacaa 74583
Query: 1143 caacagcactaattattggaagcctggcattaacaggaatgccttatctcacaggattct 1202
||||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||
Sbjct: 74584 caacagcactaatcattggaagcctagcattaacaggaataccctacctcacaggattct 74643
Query: 1203 actcaaaagaccttatcattgaagcagtaaatatatcctacacaaacgcctgagccctac 1262
|||| || ||||| ||||||||||||| ||| | |||||||||||| || |||||||||
Sbjct: 74644 actcgaaggacctcatcattgaagcagcaaacacatcctacacaaatgcttgagccctat 74703
Query: 1263 taataacattaattgcca 1280
|||||||| |||| ||||
Sbjct: 74704 taataacactaatcgcca 74721
>Sscrofa_Chr13
|| Length = 218635234
Score = 151 bits (76), Expect = 1e-33
Identities = 106/116 (91%)
Strand = Plus / Plus
Query: 606 cccactcaaacgcatgagatcttcaacaaatctttatactaaacaatgaatgcccaaaca 665
|||||||||| |||||||| | ||||||||||||||| |||| | ||||||||||||||
Sbjct: 37626864 cccactcaaatgcatgagacttccaacaaatctttatattaaatagtgaatgcccaaaca 37626923
Query: 666 taccattaatcggcctactcctagctgcagcaggaaaatcagctcaattcggacta 721
|||||||||| || |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 37626924 taccattaataggactactcctagctgcagcaggaaaatcagctcaattcagacta 37626979
Score = 121 bits (61), Expect = 1e-24
Identities = 120/138 (86%), Gaps = 5/138 (3%)
Strand = Plus / Minus
Query: 1 aaccaaaaaattggtgcaactccaaataaaagtaataaacccattcgcctcactcacatt 60
||||||||||||||||||||||||||| |||| ||||||| | || ||||| | ||||
Sbjct: 112014102 aaccaaaaaattggtgcaactccaaatgaaag-aataaacttactcacctcagttgcatt 112014044
Query: 61 aaccacactaactattctaaccatcccaattataatatccaactcaaacatctacaaaac 120
||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 112014043 aactac----actattctaaccataccaattataatatccaattcaaacatctacaaaac 112013988
Query: 121 taacctttaccctaacta 138
||||||||||| |||||
Sbjct: 112013987 caacctttaccccaacta 112013970
Score = 65.9 bits (33), Expect = 6e-08
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 204 caggccaagaaataatcatttcaaactgacattgaat 240
|||||||||||||||| ||||||||||||||||||||
Sbjct: 20387704 caggccaagaaataattatttcaaactgacattgaat 20387740
>Sscrofa_Chr03
|| Length = 144787322
Score = 131 bits (66), Expect = 1e-27
Identities = 120/137 (87%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 203 acaggccaagaaataatcatttcaaactgacattgaataaccctacagaccgtagaactc 262
||||||||||||||||| |||||||||||||| ||||| ||| |||| || ||||||||
Sbjct: 132008534 acaggccaagaaataattatttcaaactgacactgaatgaccttacaaactgtagaactg 132008593
Query: 263 tctcttagctttaaaatagactatttctcagtaatattcattcccgtagcactattcgtc 322
|| || ||||| ||| |||| || |||||||||||||| ||||||||||||||| |||
Sbjct: 132008594 tcactcagcttcaaagtagattacttctcagtaatatttgttcccgtagcactat--gtc 132008651
Query: 323 acatgatcaattataga 339
|||||||||||||||||
Sbjct: 132008652 acatgatcaattataga 132008668
>Sscrofa_Chr12
|| Length = 63588571
Score = 103 bits (52), Expect = 3e-19
Identities = 97/112 (86%)
Strand = Plus / Plus
Query: 189 taatatttatacacacaggccaagaaataatcatttcaaactgacattgaataaccctac 248
|||||||||| |||||||| |||||| ||||||||||||||||||| ||||| ||| |||
Sbjct: 58876451 taatatttatccacacaggtcaagaagtaatcatttcaaactgacactgaatgaccttac 58876510
Query: 249 agaccgtagaactctctcttagctttaaaatagactatttctcagtaatatt 300
| || |||||||| || || ||||| ||| |||| || ||||||||||||||
Sbjct: 58876511 aaactgtagaactgtcgctcagcttcaaagtagattacttctcagtaatatt 58876562
>Sscrofa_Chr01
|| Length = 315321322
Score = 103 bits (52), Expect = 3e-19
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 140 gtaaaaaccaccgtatcctacgccttcactctcagcctagtccccttactaatatttata 199
||||||||||||||||||| |||||||||||||||||| | ||| || ||||||||||
Sbjct: 164215125 gtaaaaaccaccgtatcctgtgccttcactctcagcctaatacccctattaatatttatc 164215184
Query: 200 cacacaggccaagaaataat 219
||||||||||||||||||||
Sbjct: 164215185 cacacaggccaagaaataat 164215204
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,195,262
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 30
Length of query: 1585
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1563
Effective length of database: 2,808,408,574
Effective search space: 4389542601162
Effective search space used: 4389542601162
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)