Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029412.1| ornithine aminotransferase, mitochondrial pr... 654 0.0
Alignment gi|NP_001179828.1| alanine--glyoxylate aminotransferase 2-like ... 94 2e-19
Alignment gi|XP_002689073.1| PREDICTED: alanine-glyoxylate aminotransfera... 94 2e-19
Alignment gi|NP_001015605.1| alanine--glyoxylate aminotransferase 2-like ... 91 3e-18
Alignment gi|NP_001069289.1| alanine--glyoxylate aminotransferase 2, mito... 73 6e-13
>ref|NP_001029412.1| ornithine aminotransferase, mitochondrial precursor [Bos taurus].
Length = 439
Score = 654 bits (1688), Expect(2) = 0.0
Identities = 314/336 (93%), Positives = 329/336 (97%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
M SKLA LQTV L GVHS+VASATSVATK+T+QGPPSSDYIFERE+KYGAHNYHPLPV
Sbjct: 1 MLSKLARLQTVAGLGLGVHSSVASATSVATKKTVQGPPSSDYIFERESKYGAHNYHPLPV 60
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+YVWDVEGR+YFDFLSAYSAVNQGHCHPKIV+ALK QVDKLTLTSRAFYN+VL
Sbjct: 61 ALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVDALKSQVDKLTLTSRAFYNNVL 120
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEY+TKLFNYHKVLPMNTGVEAGETACK+AR+WGYTVKGIPKYKAKI+FAAGNFWGR
Sbjct: 121 GEYEEYVTKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIPKYKAKIVFAAGNFWGR 180
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDPTSYDGFGPFMPGFEIIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 181 TLSAISSSTDPTSYDGFGPFMPGFEIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVV 240
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLA+DHENVRPDI+LLGKALSGGLYP
Sbjct: 241 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAIDHENVRPDIVLLGKALSGGLYP 300
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA
Sbjct: 301 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Score = 62.4 bits (150), Expect(2) = 0.0
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NLA NAEKMG ILRNELMKLPSD+VTTVRGKGLL
Sbjct: 344 NLAENAEKMGIILRNELMKLPSDVVTTVRGKGLL 377
>ref|NP_001179828.1| alanine--glyoxylate aminotransferase 2-like 2 [Bos taurus].
Length = 450
Score = 94.4 bits (233), Expect = 2e-19
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 25/302 (8%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + RG+G Y++D +G Y D ++ + V GHCHP +V A Q L SR +++
Sbjct: 31 PIKIVRGQGQYMYDEQGAEYIDCINNVAHV--GHCHPLVVQAAHEQNQVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP--------MNTGVEAGETACKIARR----WGYTVKGIPKY 586
++ +Y +L + LP +N+G EA + A ++AR+ W V +
Sbjct: 89 IV----DYAQRL---SETLPEKLCVFYFLNSGSEANDLALRLARQYTGHWDVVVLDHAYH 141
Query: 587 -KAKIIFAAGNFWGRTLSA----ISSSTDPTSYDG-FGPFMPGFEIIPYSDLPALERALQ 748
+ + R L + + P +Y G + P + S++ + + Q
Sbjct: 142 GHLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGPYREDHPNPAVAYASEVKRVVSSAQ 201
Query: 749 DPN--VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--W- 913
+ +AAF E + G ++P GY V + +F+ADEIQ G R G+ W
Sbjct: 202 EKGRKIAAFFAESLPSVGGQIIPPAGYFPEVAGHIRRAGGVFVADEIQVGFGRVGKHFWA 261
Query: 914 LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVA 1087
+ E+ PDI+ +GK++ G +PV+ V + + E+ +T+GG+P+ C V
Sbjct: 262 FQLQGEDFVPDIVTMGKSIGNG-HPVACVATTQAVARAFEATGVEYFNTFGGSPVSCAVG 320
Query: 1088 IA 1093
+A
Sbjct: 321 LA 322
>ref|XP_002689073.1| PREDICTED: alanine-glyoxylate aminotransferase 2-like 2 [Bos taurus].
Length = 450
Score = 94.4 bits (233), Expect = 2e-19
Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 25/302 (8%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + RG+G Y++D +G Y D ++ + V GHCHP +V A Q L SR +++
Sbjct: 31 PIKIVRGQGQYMYDEQGAEYIDCINNVAHV--GHCHPLVVQAAHEQNQVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP--------MNTGVEAGETACKIARR----WGYTVKGIPKY 586
++ +Y +L + LP +N+G EA + A ++AR+ W V +
Sbjct: 89 IV----DYAQRL---SETLPEKLCVFYFLNSGSEANDLALRLARQYTGHWDVVVLDHAYH 141
Query: 587 -KAKIIFAAGNFWGRTLSA----ISSSTDPTSYDG-FGPFMPGFEIIPYSDLPALERALQ 748
+ + R L + + P +Y G + P + S++ + + Q
Sbjct: 142 GHLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGPYREDHPNPAVAYASEVKRVVSSAQ 201
Query: 749 DPN--VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--W- 913
+ +AAF E + G ++P GY V + +F+ADEIQ G R G+ W
Sbjct: 202 EKGRKIAAFFAESLPSVGGQIIPPAGYFPEVAGHIRRAGGVFVADEIQVGFGRVGKHFWA 261
Query: 914 LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVA 1087
+ E+ PDI+ +GK++ G +PV+ V + + E+ +T+GG+P+ C V
Sbjct: 262 FQLQGEDFVPDIVTMGKSIGNG-HPVACVATTQAVARAFEATGVEYFNTFGGSPVSCAVG 320
Query: 1088 IA 1093
+A
Sbjct: 321 LA 322
>ref|NP_001015605.1| alanine--glyoxylate aminotransferase 2-like 1 [Bos taurus].
Length = 497
Score = 90.5 bits (223), Expect = 3e-18
Identities = 81/307 (26%), Positives = 140/307 (45%), Gaps = 30/307 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R + Y++D +G +Y D ++ + V GHCHP++V A ++Q++ L SR F +D
Sbjct: 30 PIKIVRAQRQYMFDEKGDQYLDCINNVAHV--GHCHPEVVKAAQKQMELLNTNSR-FLHD 86
Query: 443 VLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGN 616
+ EY + ++ N+G EA + A ++AR++ + +I
Sbjct: 87 NIVEYAKRLSATLPDRLSVCYFTNSGSEANDLALRLARQF--------RGHQDVITLDHA 138
Query: 617 FWGRTLSAISSST------------------DPTSYDGFGPFMPGFEIIPYSDLPALERA 742
+ G S I S P +Y G Y+D +++
Sbjct: 139 YHGHLSSLIEISPYKFQKGKDVKKEFVHVAPAPDTYRGKYREDHVDPASAYAD--EVKKI 196
Query: 743 LQDPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTG 907
+ + + +AAF+ E +Q G ++P GY V E +FIADE+Q G R G
Sbjct: 197 IDEAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVRGAGGVFIADEVQVGFGRVG 256
Query: 908 R--W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPL 1072
+ W + E+ PDI+ +GK + G +P++ V+ EI E+ +TYGGNP+
Sbjct: 257 KHFWSFQMFGEDFVPDIVTMGKPMGNG-HPMACVVTTKEIAEAFSASGMEYFNTYGGNPV 315
Query: 1073 GCRVAIA 1093
V +A
Sbjct: 316 SSAVGLA 322
>ref|NP_001069289.1| alanine--glyoxylate aminotransferase 2, mitochondrial [Bos taurus].
Length = 514
Score = 72.8 bits (177), Expect = 6e-13
Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Frame = +2
Query: 251 YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRA 430
Y P P+ L +G +++D EG RY DF S V+ GHCHPK+ A +RQ+ +L TS
Sbjct: 81 YFPEPLLLHQGHVEWLFDHEGNRYLDFFSGIVTVSVGHCHPKVNAAAQRQLGRLWHTSSV 140
Query: 431 FYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIAR 550
F++ ++ EY E ++ L V +N+G EA + A +AR
Sbjct: 141 FFHPLIHEYAEKLSALLPEPLKVVFLVNSGSEANDLAMLMAR 182
Score = 72.0 bits (175), Expect = 1e-12
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 755 NVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--WLAVDH 928
++A F EPIQG GVV G+L EL + + IADE+QTG R G W H
Sbjct: 280 SIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGVCIADEVQTGFGRLGSHFWGFQTH 339
Query: 929 ENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTI-KPGEHGSTYGGNPLGCRVAIA 1093
+ V PDI+ + K + G +P++AV+ +I ++ K H +T+GGNP+ C V A
Sbjct: 340 D-VLPDIVTMAKGIGNG-FPMAAVVTTPDIAKSLTKRMLHFNTFGGNPMACAVGSA 393
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,724,070
Number of extensions: 1298837
Number of successful extensions: 4079
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4068
Number of HSP's successfully gapped: 10
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866064.1| PREDICTED: similar to Ornithine aminotransferas... 660 0.0
Alignment gi|XP_535050.2| PREDICTED: similar to Ornithine aminotransferas... 660 0.0
Alignment gi|XP_866081.1| PREDICTED: similar to Ornithine aminotransferas... 464 e-142
Alignment gi|XP_538569.2| PREDICTED: similar to CG8745-PA [Canis familiar... 94 3e-19
Alignment gi|XP_855415.1| PREDICTED: similar to alanine-glyoxylate aminot... 73 6e-13
Alignment gi|XP_535690.2| PREDICTED: similar to alanine-glyoxylate aminot... 69 1e-11
>ref|XP_866064.1| PREDICTED: similar to Ornithine aminotransferase, mitochondrial
precursor (Ornithine--oxo-acid aminotransferase) isoform
2 [Canis familiaris].
Length = 440
Score = 660 bits (1703), Expect(2) = 0.0
Identities = 315/336 (93%), Positives = 331/336 (98%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
MFS+LAHLQTV +LRRGVHS+VASATSVATK+TIQGPPSSDYIFERE+KYGAHNYHPLPV
Sbjct: 2 MFSRLAHLQTVAVLRRGVHSSVASATSVATKKTIQGPPSSDYIFERESKYGAHNYHPLPV 61
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+YVWDVEGR+YFDFLSAYSAVNQGHCHPKIVNALK Q DKLTLTSRAFYN+VL
Sbjct: 62 ALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRAFYNNVL 121
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEY+TKLFNYHKVLPMNTGVEAGETACK+ARRWGYTVKGIPKYKAKI+FAAGNFWGR
Sbjct: 122 GEYEEYVTKLFNYHKVLPMNTGVEAGETACKLARRWGYTVKGIPKYKAKIVFAAGNFWGR 181
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDP+SYDGFGPFMPGFEIIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 182 TLSAISSSTDPSSYDGFGPFMPGFEIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVV 241
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYL+GVRELCTQHQVLFIADEIQTGLARTGRWLAVDHE VRPD++LLGKALSGGLYP
Sbjct: 242 PDPGYLMGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHEGVRPDVVLLGKALSGGLYP 301
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIK GEHGSTYGGNPLGCRVAIAA
Sbjct: 302 VSAVLCDDEIMLTIKAGEHGSTYGGNPLGCRVAIAA 337
Score = 59.3 bits (142), Expect(2) = 0.0
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NL NAEKMG ILRNELMKLPSDIVT VRGKGLL
Sbjct: 345 NLGENAEKMGIILRNELMKLPSDIVTAVRGKGLL 378
>ref|XP_535050.2| PREDICTED: similar to Ornithine aminotransferase, mitochondrial
precursor (Ornithine--oxo-acid aminotransferase) isoform
1 [Canis familiaris].
Length = 440
Score = 660 bits (1703), Expect(2) = 0.0
Identities = 315/336 (93%), Positives = 331/336 (98%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
MFS+LAHLQTV +LRRGVHS+VASATSVATK+TIQGPPSSDYIFERE+KYGAHNYHPLPV
Sbjct: 2 MFSRLAHLQTVAVLRRGVHSSVASATSVATKKTIQGPPSSDYIFERESKYGAHNYHPLPV 61
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+YVWDVEGR+YFDFLSAYSAVNQGHCHPKIVNALK Q DKLTLTSRAFYN+VL
Sbjct: 62 ALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKIVNALKNQADKLTLTSRAFYNNVL 121
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEY+TKLFNYHKVLPMNTGVEAGETACK+ARRWGYTVKGIPKYKAKI+FAAGNFWGR
Sbjct: 122 GEYEEYVTKLFNYHKVLPMNTGVEAGETACKLARRWGYTVKGIPKYKAKIVFAAGNFWGR 181
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDP+SYDGFGPFMPGFEIIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 182 TLSAISSSTDPSSYDGFGPFMPGFEIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVV 241
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYL+GVRELCTQHQVLFIADEIQTGLARTGRWLAVDHE VRPD++LLGKALSGGLYP
Sbjct: 242 PDPGYLMGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHEGVRPDVVLLGKALSGGLYP 301
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIK GEHGSTYGGNPLGCRVAIAA
Sbjct: 302 VSAVLCDDEIMLTIKAGEHGSTYGGNPLGCRVAIAA 337
Score = 59.3 bits (142), Expect(2) = 0.0
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NL NAEKMG ILRNELMKLPSDIVT VRGKGLL
Sbjct: 345 NLGENAEKMGIILRNELMKLPSDIVTAVRGKGLL 378
>ref|XP_866081.1| PREDICTED: similar to Ornithine aminotransferase, mitochondrial
precursor (Ornithine--oxo-acid aminotransferase) isoform
3 [Canis familiaris].
Length = 375
Score = 464 bits (1195), Expect(2) = e-142
Identities = 239/336 (71%), Positives = 257/336 (76%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
MFS+LAHLQTV +LRRGVHS+VASATSVATK+TIQGPPSSDYIFERE+KYGAHNYHPLPV
Sbjct: 2 MFSRLAHLQTVAVLRRGVHSSVASATSVATKKTIQGPPSSDYIFERESKYGAHNYHPLPV 61
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+YVWDVEGR+YFDFLSAYSAVNQGHCHPKI L+ +++
Sbjct: 62 ALERGKGIYVWDVEGRKYFDFLSAYSAVNQGHCHPKI-----------GLSEIVYFSFSA 110
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
G + WG T+ I
Sbjct: 111 GNF--------------------------------WGRTLSAI----------------- 121
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
SSSTDP+SYDGFGPFMPGFEIIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 122 -----SSSTDPSSYDGFGPFMPGFEIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVV 176
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYL+GVRELCTQHQVLFIADEIQTGLARTGRWLAVDHE VRPD++LLGKALSGGLYP
Sbjct: 177 PDPGYLMGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHEGVRPDVVLLGKALSGGLYP 236
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIK GEHGSTYGGNPLGCRVAIAA
Sbjct: 237 VSAVLCDDEIMLTIKAGEHGSTYGGNPLGCRVAIAA 272
Score = 59.3 bits (142), Expect(2) = e-142
Identities = 30/34 (88%), Positives = 30/34 (88%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NL NAEKMG ILRNELMKLPSDIVT VRGKGLL
Sbjct: 280 NLGENAEKMGIILRNELMKLPSDIVTAVRGKGLL 313
>ref|XP_538569.2| PREDICTED: similar to CG8745-PA [Canis familiaris].
Length = 450
Score = 93.6 bits (231), Expect = 3e-19
Identities = 78/295 (26%), Positives = 138/295 (46%), Gaps = 18/295 (6%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + RG+G Y++D +G Y D ++ + V GHCHP +V A Q L SR +++
Sbjct: 31 PIKIVRGQGQYLYDEQGAEYLDCINNVAHV--GHCHPLVVQAAHEQNQVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP-MNTGVEAGETACKIARR----WGYTVKGIPKY-KAKIIF 604
++ + L V +N+G EA + A ++AR+ W V + +
Sbjct: 89 IVDYAQRLSETLPEKLSVFYFLNSGSEANDLALRLARQYTGHWDVVVLDHAYHGHLSSLI 148
Query: 605 AAGNFWGRTLSA----ISSSTDPTSYDG-FGPFMPGFEIIPYSDLPALERALQDPN--VA 763
+ R L + + P +Y G + P +++ + ++Q+ +A
Sbjct: 149 DISPYKFRDLDGQKEWVHVAPLPDTYRGLYQEDHPDPAGAYANEVKRVVSSVQEKGRKIA 208
Query: 764 AFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--W-LAVDHEN 934
AF VE + AG ++P G+ V E +F+ADEIQ G R G+ W + E+
Sbjct: 209 AFFVESLPSVAGQIIPPAGFFQEVAEHIHGAGGVFVADEIQVGFGRVGKHFWAFQLQGED 268
Query: 935 VRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVAIA 1093
PDI+ +GK++ G +PV+ V + + E+ +T+GG+P+ C V +A
Sbjct: 269 FVPDIVTMGKSIGNG-HPVACVATTQAVARAFEATGVEYFNTFGGSPVSCAVGLA 322
>ref|XP_855415.1| PREDICTED: similar to alanine-glyoxylate aminotransferase 2 precursor
[Canis familiaris].
Length = 520
Score = 72.8 bits (177), Expect = 6e-13
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Frame = +2
Query: 755 NVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTG-RWLAVDHE 931
++A F EPIQG GVV G+L EL + L IADE+QTG R G +
Sbjct: 286 SIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRERGGLCIADEVQTGFGRLGSHFWGFQTH 345
Query: 932 NVRPDIILLGKALSGGLYPVSAVLCDDEIMLTI-KPGEHGSTYGGNPLGCRVAIA 1093
+ PDI+ + K + G +P++AV+ EI ++ K H +T+GGNP+ C + A
Sbjct: 346 GILPDIVTMAKGIGNG-FPMAAVVTTPEIANSLAKSVLHFNTFGGNPIACAIGSA 399
Score = 68.2 bits (165), Expect = 2e-11
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Frame = +2
Query: 251 YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRA 430
Y P P+ L +G +++D EG RY DF S V+ GHCHPK+ ++Q+ +L TS
Sbjct: 87 YFPKPLLLHQGHKEWLFDYEGNRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTSTL 146
Query: 431 FYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIAR 550
F++ + E+ E ++ L + +N+G EA + A +AR
Sbjct: 147 FFHPPIHEFAEKLSALLPEPLKVIFLVNSGSEANDLAMLMAR 188
>ref|XP_535690.2| PREDICTED: similar to alanine-glyoxylate aminotransferase 2-like 1
[Canis familiaris].
Length = 497
Score = 68.6 bits (166), Expect = 1e-11
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Frame = +2
Query: 758 VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--W-LAVDH 928
+AAF+ E +Q G ++P GY V E + +FIADE+Q G R G+ W +
Sbjct: 238 IAAFIAESMQSCGGQIIPPAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQG 297
Query: 929 ENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVAIA 1093
E+ PDI+ +GK + G +P++ V+ EI E+ +TYGGNP+ + +A
Sbjct: 298 EDFVPDIVTMGKPMGNG-HPMACVVTTKEIAEAFSSSGMEYFNTYGGNPVSSAIGLA 353
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,882,293
Number of extensions: 1340620
Number of successful extensions: 4123
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4115
Number of HSP's successfully gapped: 12
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000265.1| ornithine aminotransferase, mitochondrial isofo... 644 0.0
Alignment gi|NP_001165285.1| ornithine aminotransferase, mitochondrial is... 392 e-120
Alignment gi|NP_112569.2| alanine--glyoxylate aminotransferase 2-like 1 i... 97 2e-20
Alignment gi|NP_699204.1| alanine--glyoxylate aminotransferase 2-like 2 [... 94 2e-19
Alignment gi|NP_001140099.1| alanine--glyoxylate aminotransferase 2-like ... 85 1e-16
Alignment gi|NP_001140062.1| alanine--glyoxylate aminotransferase 2-like ... 81 2e-15
Alignment gi|NP_114106.1| alanine--glyoxylate aminotransferase 2, mitocho... 73 5e-13
>ref|NP_000265.1| ornithine aminotransferase, mitochondrial isoform 1 precursor [Homo
sapiens].
Length = 439
Score = 644 bits (1662), Expect(2) = 0.0
Identities = 308/336 (91%), Positives = 328/336 (97%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
MFSKLAHLQ +L RGVHS+VASATSVATK+T+QGPP+SD IFERE KYGAHNYHPLPV
Sbjct: 1 MFSKLAHLQRFAVLSRGVHSSVASATSVATKKTVQGPPTSDDIFEREYKYGAHNYHPLPV 60
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+Y+WDVEGR+YFDFLS+YSAVNQGHCHPKIVNALK QVDKLTLTSRAFYN+VL
Sbjct: 61 ALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVL 120
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEYITKLFNYHKVLPMNTGVEAGETACK+AR+WGYTVKGI KYKAKI+FAAGNFWGR
Sbjct: 121 GEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGR 180
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDPTSYDGFGPFMPGF+IIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 181 TLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVV 240
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYL+GVRELCT+HQVLFIADEIQTGLARTGRWLAVD+ENVRPDI+LLGKALSGGLYP
Sbjct: 241 PDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYP 300
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDD+IMLTIKPGEHGSTYGGNPLGCRVAIAA
Sbjct: 301 VSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Score = 58.2 bits (139), Expect(2) = 0.0
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NLA NA+K+G ILRNELMKLPSD+VT VRGKGLL
Sbjct: 344 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLL 377
>ref|NP_001165285.1| ornithine aminotransferase, mitochondrial isoform 2 [Homo sapiens].
Length = 301
Score = 392 bits (1008), Expect(2) = e-120
Identities = 187/198 (94%), Positives = 197/198 (99%)
Frame = +2
Query: 503 MNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGRTLSAISSSTDPTSYDGFG 682
MNTGVEAGETACK+AR+WGYTVKGI KYKAKI+FAAGNFWGRTLSAISSSTDPTSYDGFG
Sbjct: 1 MNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 60
Query: 683 PFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQV 862
PFMPGF+IIPY+DLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYL+GVRELCT+HQV
Sbjct: 61 PFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQV 120
Query: 863 LFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPGE 1042
LFIADEIQTGLARTGRWLAVD+ENVRPDI+LLGKALSGGLYPVSAVLCDD+IMLTIKPGE
Sbjct: 121 LFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE 180
Query: 1043 HGSTYGGNPLGCRVAIAA 1096
HGSTYGGNPLGCRVAIAA
Sbjct: 181 HGSTYGGNPLGCRVAIAA 198
Score = 58.2 bits (139), Expect(2) = e-120
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NLA NA+K+G ILRNELMKLPSD+VT VRGKGLL
Sbjct: 206 NLAENADKLGIILRNELMKLPSDVVTAVRGKGLL 239
>ref|NP_112569.2| alanine--glyoxylate aminotransferase 2-like 1 isoform 1 [Homo
sapiens].
Length = 499
Score = 97.4 bits (241), Expect = 2e-20
Identities = 84/307 (27%), Positives = 139/307 (45%), Gaps = 30/307 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R + Y++D G +Y D ++ + V GHCHP +V A +Q++ L SR F +D
Sbjct: 30 PIKIVRAQRQYMFDENGEQYLDCINNVAHV--GHCHPGVVKAALKQMELLNTNSR-FLHD 86
Query: 443 VLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGN 616
+ EY + ++ N+G EA + A ++AR++ + +I
Sbjct: 87 NIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQF--------RGHQDVITLDHA 138
Query: 617 FWGRTLSAISSST------------------DPTSYDGFGPFMPGFEIIPYSDLPALERA 742
+ G S I S P +Y G Y+D +++
Sbjct: 139 YHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDHADSASAYAD--EVKKI 196
Query: 743 LQDPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTG 907
++D + +AAF+ E +Q G ++P GY V E +FIADE+Q G R G
Sbjct: 197 IEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVG 256
Query: 908 R--W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPL 1072
+ W + E+ PDI+ +GK + G +PV+ V+ EI E+ +TYGGNP+
Sbjct: 257 KHFWSFQMYGEDFVPDIVTMGKPMGNG-HPVACVVTTKEIAEAFSSSGMEYFNTYGGNPV 315
Query: 1073 GCRVAIA 1093
C V +A
Sbjct: 316 SCAVGLA 322
>ref|NP_699204.1| alanine--glyoxylate aminotransferase 2-like 2 [Homo sapiens].
Length = 450
Score = 94.4 bits (233), Expect = 2e-19
Identities = 81/306 (26%), Positives = 137/306 (44%), Gaps = 29/306 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
PV + R +G Y++D +G Y D +S + V GHCHP +V A Q L SR +++
Sbjct: 31 PVKIVRAQGQYMYDEQGAEYIDCISNVAHV--GHCHPLVVQAAHEQNQVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP--------MNTGVEAGETACKIARRW-------------- 556
++ +Y +L + LP +N+G EA + A ++AR +
Sbjct: 89 IV----DYAQRL---SETLPEQLCVFYFLNSGSEANDLALRLARHYTGHQDVVVLDHAYH 141
Query: 557 GY--TVKGIPKYKAKIIFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPA 730
G+ ++ I YK + + W + P D P M + A
Sbjct: 142 GHLSSLIDISPYKFRNLDGQKE-WVHVAPLPDTYRGPYREDHPNPAMAYANEVKRVVSSA 200
Query: 731 LERALQDPNVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR 910
E+ + +AAF E + G ++P GY V E + +F+ADEIQ G R G+
Sbjct: 201 QEKGRK---IAAFFAESLPSVGGQIIPPAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGK 257
Query: 911 --W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLG 1075
W + ++ PDI+ +GK++ G +PV+ V + + E+ +T+GG+P+
Sbjct: 258 HFWAFQLQGKDFVPDIVTMGKSIGNG-HPVACVAATQPVARAFEATGVEYFNTFGGSPVS 316
Query: 1076 CRVAIA 1093
C V +A
Sbjct: 317 CAVGLA 322
>ref|NP_001140099.1| alanine--glyoxylate aminotransferase 2-like 1 isoform 3 [Homo
sapiens].
Length = 441
Score = 85.1 bits (209), Expect = 1e-16
Identities = 76/275 (27%), Positives = 122/275 (44%), Gaps = 30/275 (10%)
Frame = +2
Query: 359 GHCHPKIVNALKRQVDKLTLTSRAFYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGET 532
GHCHP +V A +Q++ L SR F +D + EY + ++ N+G EA +
Sbjct: 2 GHCHPGVVKAALKQMELLNTNSR-FLHDNIVEYAKRLSATLPEKLSVCYFTNSGSEANDL 60
Query: 533 ACKIARRWGYTVKGIPKYKAKIIFAAGNFWGRTLSAISSST------------------D 658
A ++AR++ + +I + G S I S
Sbjct: 61 ALRLARQF--------RGHQDVITLDHAYHGHLSSLIEISPYKFQKGKDVKKEFVHVAPT 112
Query: 659 PTSYDGFGPFMPGFEIIPYSDLPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGY 823
P +Y G Y+D +++ ++D + +AAF+ E +Q G ++P GY
Sbjct: 113 PDTYRGKYREDHADSASAYAD--EVKKIIEDAHNSGRKIAAFIAESMQSCGGQIIPPAGY 170
Query: 824 LVGVRELCTQHQVLFIADEIQTGLARTGR--W-LAVDHENVRPDIILLGKALSGGLYPVS 994
V E +FIADE+Q G R G+ W + E+ PDI+ +GK + G +PV+
Sbjct: 171 FQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGEDFVPDIVTMGKPMGNG-HPVA 229
Query: 995 AVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVAIA 1093
V+ EI E+ +TYGGNP+ C V +A
Sbjct: 230 CVVTTKEIAEAFSSSGMEYFNTYGGNPVSCAVGLA 264
>ref|NP_001140062.1| alanine--glyoxylate aminotransferase 2-like 1 isoform 2 [Homo
sapiens].
Length = 493
Score = 80.9 bits (198), Expect = 2e-15
Identities = 80/307 (26%), Positives = 134/307 (43%), Gaps = 30/307 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R + Y++D G +Y D ++ N H +V A +Q++ L SR F +D
Sbjct: 30 PIKIVRAQRQYMFDENGEQYLDCIN-----NVAH---GVVKAALKQMELLNTNSR-FLHD 80
Query: 443 VLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGN 616
+ EY + ++ N+G EA + A ++AR++ + +I
Sbjct: 81 NIVEYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQF--------RGHQDVITLDHA 132
Query: 617 FWGRTLSAISSST------------------DPTSYDGFGPFMPGFEIIPYSDLPALERA 742
+ G S I S P +Y G Y+D +++
Sbjct: 133 YHGHLSSLIEISPYKFQKGKDVKKEFVHVAPTPDTYRGKYREDHADSASAYAD--EVKKI 190
Query: 743 LQDPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTG 907
++D + +AAF+ E +Q G ++P GY V E +FIADE+Q G R G
Sbjct: 191 IEDAHNSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVG 250
Query: 908 R--W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPL 1072
+ W + E+ PDI+ +GK + G +PV+ V+ EI E+ +TYGGNP+
Sbjct: 251 KHFWSFQMYGEDFVPDIVTMGKPMGNG-HPVACVVTTKEIAEAFSSSGMEYFNTYGGNPV 309
Query: 1073 GCRVAIA 1093
C V +A
Sbjct: 310 SCAVGLA 316
>ref|NP_114106.1| alanine--glyoxylate aminotransferase 2, mitochondrial precursor [Homo
sapiens].
Length = 514
Score = 73.2 bits (178), Expect = 5e-13
Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +2
Query: 755 NVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--WLAVDH 928
++A F EPIQG GVV G+L EL + IADE+QTG R G W H
Sbjct: 280 SIAGFFAEPIQGVNGVVQYPKGFLKEAFELVRARGGVCIADEVQTGFGRLGSHFWGFQTH 339
Query: 929 ENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTI-KPGEHGSTYGGNPLGCRVAIA 1093
+ V PDI+ + K + G +P++AV+ EI ++ K +H +T+GGNP+ C + A
Sbjct: 340 D-VLPDIVTMAKGIGNG-FPMAAVITTPEIAKSLAKCLQHFNTFGGNPMACAIGSA 393
Score = 67.8 bits (164), Expect = 2e-11
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Frame = +2
Query: 110 LQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHN------------- 250
L+ L G T + S+ TK + P D++ ER G +
Sbjct: 22 LEMHPFLSLGTSRTSVTKLSLHTKPRM---PPCDFMPERYQSLGYNRVLEIHKEHLSPVV 78
Query: 251 --YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTS 424
Y P+ L +G +++D EG RY DF S V+ GHCHPK+ ++Q+ +L TS
Sbjct: 79 TAYFQKPLLLHQGHMEWLFDAEGSRYLDFFSGIVTVSVGHCHPKVNAVAQKQLGRLWHTS 138
Query: 425 RAFYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIAR 550
F++ + EY E + L + +N+G EA E A +AR
Sbjct: 139 TVFFHPPMHEYAEKLAALLPEPLKVIFLVNSGSEANELAMLMAR 182
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,975,918
Number of extensions: 1324429
Number of successful extensions: 4142
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4132
Number of HSP's successfully gapped: 12
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058674.1| ornithine aminotransferase, mitochondrial precu... 636 0.0
Alignment gi|NP_001157059.1| alanine--glyoxylate aminotransferase 2-like ... 105 7e-23
Alignment gi|NP_082183.2| alanine--glyoxylate aminotransferase 2-like 1 [... 105 7e-23
Alignment gi|NP_082674.1| alanine--glyoxylate aminotransferase 2-like 2 [... 100 3e-21
Alignment gi|NP_001027021.1| alanine--glyoxylate aminotransferase 2, mito... 72 4e-14
>ref|NP_058674.1| ornithine aminotransferase, mitochondrial precursor [Mus musculus].
Length = 439
Score = 636 bits (1640), Expect(2) = 0.0
Identities = 302/336 (89%), Positives = 325/336 (96%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
M SKLA LQT+ LRRGVH++VASATSVATK+T QGPPSS+YIFERE+KYGAHNYHPLPV
Sbjct: 1 MLSKLASLQTIAALRRGVHTSVASATSVATKKTEQGPPSSEYIFERESKYGAHNYHPLPV 60
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKG+Y+WDVEGR+YFDFLSAY AV+QGHCHPKI++A+K QVDKLTLTSRAFYN+VL
Sbjct: 61 ALERGKGIYMWDVEGRQYFDFLSAYGAVSQGHCHPKIIDAMKSQVDKLTLTSRAFYNNVL 120
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEYITKLFNY+KVLPMNTGVEAGETACK+ARRWGYTVKGI KYKAKI+FA GNFWGR
Sbjct: 121 GEYEEYITKLFNYNKVLPMNTGVEAGETACKLARRWGYTVKGIQKYKAKIVFADGNFWGR 180
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDPTSYDGFGPFMPGFE IPY+DLPALERALQDPNVAAFMVEPIQGEAGV+V
Sbjct: 181 TLSAISSSTDPTSYDGFGPFMPGFETIPYNDLPALERALQDPNVAAFMVEPIQGEAGVIV 240
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYL GVRELCT+HQVLFIADEIQTGLARTGRWLAVDHENVRPD++LLGKALSGGLYP
Sbjct: 241 PDPGYLTGVRELCTRHQVLFIADEIQTGLARTGRWLAVDHENVRPDMVLLGKALSGGLYP 300
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCR+AIAA
Sbjct: 301 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRIAIAA 336
Score = 57.8 bits (138), Expect(2) = 0.0
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NLA NA+KMG ILR ELMKLPSD+VT+VRGKGLL
Sbjct: 344 NLAENADKMGAILRKELMKLPSDVVTSVRGKGLL 377
>ref|NP_001157059.1| alanine--glyoxylate aminotransferase 2-like 1 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 7e-23
Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 28/305 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R +G Y++D +G RY D ++ + V GHCHP++V A +Q++ L SR +++
Sbjct: 30 PIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCHPEVVKAAAKQMELLNTNSRFLHDN 87
Query: 443 VLGEYEEYITKLFNYHKVLPM--NTGVEAGETACKIARRW--------------GY--TV 568
++ E+ + +T + N+G EA + A ++AR++ G+ ++
Sbjct: 88 II-EFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSL 146
Query: 569 KGIPKYKAKIIFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQ 748
I YK F G R ++ + D G + E + +++ ++
Sbjct: 147 IEISPYK----FQKGKDVKRETVHVAPAPDTYR----GKYREDHEDPSTAYADEVKKIIE 198
Query: 749 DPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRW 913
+ + +AAF+ E +Q G ++P GY V E + +FIADE+Q G R GR+
Sbjct: 199 EAHSSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRY 258
Query: 914 ---LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGC 1078
+ E+ PDI+ +GK + G +P+S V+ EI E+ +TYGGNP+ C
Sbjct: 259 FWSFQMYGEDFVPDIVTMGKPMGNG-HPISCVVTTKEIAEAFSSSGMEYFNTYGGNPVSC 317
Query: 1079 RVAIA 1093
V +A
Sbjct: 318 AVGLA 322
>ref|NP_082183.2| alanine--glyoxylate aminotransferase 2-like 1 [Mus musculus].
Length = 499
Score = 105 bits (262), Expect = 7e-23
Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 28/305 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R +G Y++D +G RY D ++ + V GHCHP++V A +Q++ L SR +++
Sbjct: 30 PIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCHPEVVKAAAKQMELLNTNSRFLHDN 87
Query: 443 VLGEYEEYITKLFNYHKVLPM--NTGVEAGETACKIARRW--------------GY--TV 568
++ E+ + +T + N+G EA + A ++AR++ G+ ++
Sbjct: 88 II-EFAKRLTATLPQELSVCYFTNSGSEANDLALRLARQFRGHQDVITLDHAYHGHLSSL 146
Query: 569 KGIPKYKAKIIFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQ 748
I YK F G R ++ + D G + E + +++ ++
Sbjct: 147 IEISPYK----FQKGKDVKRETVHVAPAPDTYR----GKYREDHEDPSTAYADEVKKIIE 198
Query: 749 DPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRW 913
+ + +AAF+ E +Q G ++P GY V E + +FIADE+Q G R GR+
Sbjct: 199 EAHSSGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRY 258
Query: 914 ---LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGC 1078
+ E+ PDI+ +GK + G +P+S V+ EI E+ +TYGGNP+ C
Sbjct: 259 FWSFQMYGEDFVPDIVTMGKPMGNG-HPISCVVTTKEIAEAFSSSGMEYFNTYGGNPVSC 317
Query: 1079 RVAIA 1093
V +A
Sbjct: 318 AVGLA 322
>ref|NP_082674.1| alanine--glyoxylate aminotransferase 2-like 2 [Mus musculus].
Length = 467
Score = 100 bits (248), Expect = 3e-21
Identities = 81/305 (26%), Positives = 133/305 (43%), Gaps = 28/305 (9%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
PV + RG+G Y++D +GR Y D ++ + V GHCHP +V A Q L SR +++
Sbjct: 31 PVKIIRGQGQYLYDEQGREYLDCINNVAHV--GHCHPTVVQAAHEQNLVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP-MNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNF 619
++ + L V +N+G EA + A ++AR++ ++ +
Sbjct: 89 IVDYAQRLSETLPEQLSVFYFLNSGSEANDLALRLARQY--------TGHQDVVVLDHAY 140
Query: 620 WGRTLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPN-------------- 757
G S I S P + G + P D PN
Sbjct: 141 HGHLSSLIDIS--PYKFRNLGGQKEWVHVAPLPDTYRGPYREDHPNPAEAYANEVKHVIS 198
Query: 758 --------VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR- 910
+AAF E + +G ++P GY V E + LF+ADEIQ G R G+
Sbjct: 199 SAQQKGRKIAAFFAESLPSVSGQIIPPAGYFSQVAEHIHRAGGLFVADEIQVGFGRIGKH 258
Query: 911 -W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGC 1078
W ++ E+ PDI+ +GK++ G +PV+ + + + E+ +T+GGNP+ C
Sbjct: 259 FWAFQLEGEDFVPDIVTMGKSIGNG-HPVACMATTQAVSRAFEATGVEYFNTFGGNPVSC 317
Query: 1079 RVAIA 1093
V +A
Sbjct: 318 AVGLA 322
>ref|NP_001027021.1| alanine--glyoxylate aminotransferase 2, mitochondrial [Mus musculus].
Length = 541
Score = 68.9 bits (167), Expect(2) = 4e-14
Identities = 45/116 (38%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +2
Query: 755 NVAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--WLAVDH 928
++A F EPIQG GVV +L L + + IADE+QTG R G W H
Sbjct: 307 SIAGFFAEPIQGVNGVVQYPKEFLKEAFALVRERGGVCIADEVQTGFGRLGSHFWGFQTH 366
Query: 929 ENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTI-KPGEHGSTYGGNPLGCRVAIA 1093
+ V PDI+ + K + G +P++AV+ EI ++ K H ST+GGNPL C + A
Sbjct: 367 D-VLPDIVTMAKGIGNG-FPMAAVVTTPEIAKSLAKRLLHFSTFGGNPLACAIGSA 420
Score = 27.7 bits (60), Expect(2) = 4e-14
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPS--DIVTTVRGKGLL 1218
NL N++++GT + + KL DIV VRGKGL+
Sbjct: 429 NLQRNSQEVGTYMLLKFAKLRDEFDIVGDVRGKGLM 464
Score = 71.6 bits (174), Expect = 1e-12
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Frame = +2
Query: 251 YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRA 430
Y P+ L +G +++D EG RY DF S V+ GHCHPK+ K+Q+D+L TS
Sbjct: 80 YFRKPLLLHQGHMEWLFDSEGNRYLDFFSGIVTVSVGHCHPKVSAVAKKQIDRLWHTSSV 139
Query: 431 FYNDVLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIAR 550
F++ + EY E ++ L + +N+G EA + A +AR
Sbjct: 140 FFHSPMHEYAEKLSALLPEPLKVIFLVNSGSEANDLAMVMAR 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,534,775
Number of extensions: 1108636
Number of successful extensions: 3521
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3511
Number of HSP's successfully gapped: 11
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172070.1| ornithine aminotransferase, mitochondrial [S... 683 0.0
Alignment gi|XP_003123702.2| PREDICTED: alanine--glyoxylate aminotransfer... 97 2e-20
Alignment gi|XP_003129316.2| PREDICTED: alanine--glyoxylate aminotransfer... 81 1e-15
Alignment gi|XP_003133929.2| PREDICTED: alanine--glyoxylate aminotransfer... 64 2e-10
>ref|NP_001172070.1| ornithine aminotransferase, mitochondrial [Sus scrofa].
Length = 439
Score = 683 bits (1763), Expect(2) = 0.0
Identities = 333/336 (99%), Positives = 335/336 (99%)
Frame = +2
Query: 89 MFSKLAHLQTVTLLRRGVHSTVASATSVATKRTIQGPPSSDYIFEREAKYGAHNYHPLPV 268
MFSKLAHLQTV +LRRGVHSTVASATSVATKRT+QGPPSSDYIFEREAKYGAHNYHPLPV
Sbjct: 1 MFSKLAHLQTVAVLRRGVHSTVASATSVATKRTVQGPPSSDYIFEREAKYGAHNYHPLPV 60
Query: 269 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 448
ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL
Sbjct: 61 ALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYNDVL 120
Query: 449 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 628
GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR
Sbjct: 121 GEYEEYITKLFNYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGNFWGR 180
Query: 629 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 808
TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV
Sbjct: 181 TLSAISSSTDPTSYDGFGPFMPGFEIIPYSDLPALERALQDPNVAAFMVEPIQGEAGVVV 240
Query: 809 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 988
PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP
Sbjct: 241 PDPGYLVGVRELCTQHQVLFIADEIQTGLARTGRWLAVDHENVRPDIILLGKALSGGLYP 300
Query: 989 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 1096
VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA
Sbjct: 301 VSAVLCDDEIMLTIKPGEHGSTYGGNPLGCRVAIAA 336
Score = 65.1 bits (157), Expect(2) = 0.0
Identities = 33/34 (97%), Positives = 33/34 (97%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPSDIVTTVRGKGLL 1218
NLA NAEKMGTILRNELMKLPSDIVTTVRGKGLL
Sbjct: 344 NLAENAEKMGTILRNELMKLPSDIVTTVRGKGLL 377
>ref|XP_003123702.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 2 [Sus
scrofa].
Length = 450
Score = 96.7 bits (239), Expect = 2e-20
Identities = 81/302 (26%), Positives = 141/302 (46%), Gaps = 25/302 (8%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + RG+G Y++D EG Y D ++ + V GHCHP +V A Q L SR +++
Sbjct: 31 PIKIVRGQGQYMYDEEGAEYIDCINNVAHV--GHCHPLVVQAAHEQNQVLNTNSRYLHDN 88
Query: 443 VLGEYEEYITKLFNYHKVLP--------MNTGVEAGETACKIARR----WGYTVKGIPKY 586
++ +Y +L + LP +N+G EA + A ++AR+ W V +
Sbjct: 89 IV----DYAQRL---SETLPEKLCVFYFLNSGSEANDLALRLARQYTGHWDVVVLDHAYH 141
Query: 587 -KAKIIFAAGNFWGRTLSA----ISSSTDPTSYDG-FGPFMPGFEIIPYSDLPALERALQ 748
+ + R L + + P +Y G + P + S++ + + Q
Sbjct: 142 GHLSSLIDISPYKFRDLDGQKEWVHVAPLPDTYRGLYREDHPNPAVAYASEVKRVVSSAQ 201
Query: 749 DPN--VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTGR--W- 913
+ +AAF E + G +VP G+ V E + +F+ADEIQ G R G+ W
Sbjct: 202 EKGRKIAAFFAESLPSVGGQIVPPAGFFPEVAEHIHKAGGVFVADEIQVGFGRVGKHFWA 261
Query: 914 LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTIKPG--EHGSTYGGNPLGCRVA 1087
+ E+ PDI+ +GK++ G +PV+ V + + E+ +T+GG+P+ C V
Sbjct: 262 FQLQGEDFVPDIVTMGKSIGNG-HPVACVATTQAVARAFEATGVEYFNTFGGSPVSCAVG 320
Query: 1088 IA 1093
+A
Sbjct: 321 LA 322
>ref|XP_003129316.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like,
partial [Sus scrofa].
Length = 309
Score = 81.3 bits (199), Expect = 1e-15
Identities = 74/280 (26%), Positives = 128/280 (45%), Gaps = 28/280 (10%)
Frame = +2
Query: 263 PVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRAFYND 442
P+ + R + Y++D +G RY D ++ + V GHCHP++V A ++Q++ L SR F +D
Sbjct: 30 PIKIVRAQRQYMFDEKGDRYLDCINNVAHV--GHCHPEVVQAAQKQMELLNTNSR-FLHD 86
Query: 443 VLGEYEEYITKLF--NYHKVLPMNTGVEAGETACKIARRWGYTVKGIPKYKAKIIFAAGN 616
+ EY + ++ N+G EA + A ++AR++ + +I
Sbjct: 87 NIVEYAKRLSATLPDKLSVCYFTNSGSEANDLALRLARQF--------RGHQDVITLDHA 138
Query: 617 FWGRTLSAISSST------------------DPTSYDGFGPFMPGFEIIPYSDLPALERA 742
+ G S I S P +Y G Y+D +++
Sbjct: 139 YHGHLTSLIEISPYKFQQGKDVKKEFVHVAPSPDTYRGKYREDHADPAGAYAD--EVKKI 196
Query: 743 LQDPN-----VAAFMVEPIQGEAGVVVPDPGYLVGVRELCTQHQVLFIADEIQTGLARTG 907
+++ + +AAF+ E +Q G ++P GY V E +FIADE+Q G R G
Sbjct: 197 IEEAHNRGRKIAAFIAESMQSCGGQIIPPAGYFQKVAEYVRGAGGVFIADEVQVGFGRVG 256
Query: 908 R--W-LAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEI 1018
+ W + E+ PDII +GK + G +P++ V+ EI
Sbjct: 257 KHFWSFQMLGEDFVPDIITMGKPMGNG-HPMACVVTTREI 295
>ref|XP_003133929.2| PREDICTED: alanine--glyoxylate aminotransferase 2,
mitochondrial-like [Sus scrofa].
Length = 354
Score = 63.5 bits (153), Expect = 2e-10
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +2
Query: 251 YHPLPVALERGKGVYVWDVEGRRYFDFLSAYSAVNQGHCHPKIVNALKRQVDKLTLTSRA 430
Y P P+ L +G +++D EG RY DF S V+ GHCHPK+ A + Q+ +L TS
Sbjct: 80 YFPEPLLLHQGHMEWLFDYEGNRYLDFFSGIVTVSVGHCHPKLNAAAQTQLGRLWHTSPV 139
Query: 431 FYNDVLGEYEEYITKL 478
F++ + EY E ++ L
Sbjct: 140 FFHPPIHEYAEKLSAL 155
Score = 44.3 bits (103), Expect(2) = 2e-07
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 878 EIQTGLARTGR--WLAVDHENVRPDIILLGKALSGGLYPVSAVLCDDEIMLTI-KPGEHG 1048
++QTG R G W H+ V PDI+ + K + G +P++AV+ EI ++ K H
Sbjct: 161 KVQTGFGRLGSHFWGFQTHD-VLPDIVTMAKGIGNG-FPMAAVVTSPEIAESLAKCLFHF 218
Query: 1049 STYGGNPLGCRVAIA 1093
+T+GGNP+ C + A
Sbjct: 219 NTFGGNPVACAIGSA 233
Score = 29.3 bits (64), Expect(2) = 2e-07
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 1117 NLA*NAEKMGTILRNELMKLPS--DIVTTVRGKGLL 1218
NL N+ ++GT L +L KL DIV VRGKGL+
Sbjct: 242 NLQENSREVGTYLLLKLAKLRDEFDIVGDVRGKGLM 277
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,758,381
Number of extensions: 833198
Number of successful extensions: 2576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2571
Number of HSP's successfully gapped: 9
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002776
(1220 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 650 0.0
Sscrofa_Chr14 462 e-127
Sscrofa_Chr13 226 2e-56
>Sscrofa_ChrX
|| Length = 144288218
Score = 650 bits (328), Expect = 0.0
Identities = 663/766 (86%), Gaps = 9/766 (1%)
Strand = Plus / Plus
Query: 348 ctgtgaaccaagggcactgccacccaaagatcgtgaacgctctgaaacgtcaggtggaca 407
|||||||||||||||| || ||||||||||| |||| |||||||| ||| ||||||||
Sbjct: 140488653 ctgtgaaccaagggcattgtcacccaaagattatgaatgctctgaagagtc-ggtggaca 140488711
Query: 408 aactgaccctgacgtcgagggctttctacaatgacgtgctcggggaatacgaagagtaca 467
|| |||||| | ||| ||||||||| || || ||||||| | | ||| ||||||||
Sbjct: 140488712 aattgacccgaatgtctagggctttccaccataacgtgcttgag-aatgtgaagagtatg 140488770
Query: 468 ttacgaagcttttcaactaccacaaggtcctgcctatgaatacaggggtggaggctggag 527
|||| || ||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct: 140488771 ttactaaacttttcaactaccacgaggtccttcctatgaatacagaggtggag-ctggag 140488829
Query: 528 agactgcctgcaaaatcgctcgtagatggggctatacggtgaagggtatcccaaaataca 587
|||||||||||||||| ||||| | |||||| ||||| |||||||||| ||||||| ||
Sbjct: 140488830 agactgcctgcaaaattgctcggaaatggggatataccatgaagggtattccaaaatgca 140488889
Query: 588 aagcaaagatcatttttgcagctggaaacttttggggaagaacgttgt-ctgcgatctcc 646
|||||||||||||||||| |||||||||| |||| || | ||| || | | || |||| |
Sbjct: 140488890 aagcaaagatcatttttgaagctggaaacgtttgcgggaaaacattcttccgctatctgc 140488949
Query: 647 agttccacagaccccaccagttacgacgggtttggaccatttatgccaggtttcgaaatc 706
||||||| ||||||||||| | |||| || ||||||||||||||||||||||| ||||||
Sbjct: 140488950 agttccatagaccccaccactcacgatggttttggaccatttatgccaggttttgaaatc 140489009
Query: 707 attccatatagcgatctgcctgctctcgagcgcgcgcttcaggatccaaacgttgctgcg 766
|||||||||| ||||||||||||||| |||| | ||| ||||| |||||||||||||||
Sbjct: 140489010 attccatataacgatctgcctgctctagagcatgtgctgcaggagccaaacgttgctgcg 140489069
Query: 767 ttcatggtagagccaattcagggtgaagctggcgtcgtggttccggatccaggctacctc 826
|||||||||||| ||||||||||||| | ||| ||| ||||| |||||||||||||||
Sbjct: 140489070 ttcatggtagaggcaattcagggtgaggtgggcatcggtgttccagatccaggctacctc 140489129
Query: 827 gtgggcgtgcgcgagctctgcacccagcaccaggttctgtttattgctgacgaaatacaa 886
||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 140489130 atgggcttgcatgagctctgcacccagcaccaggttctgtctattgctgatcaaatacag 140489189
Query: 887 acaggattggccagaactggtagatggctggctgttgatcatgaaaatgtcagacctgat 946
|||||||||||||||||| || |||| |||||||| ||||||||||||||||| |||||
Sbjct: 140489190 acaggattggccagaacttgtcgatgtctggctgtcgatcatgaaaatgtcagggctgat 140489249
Query: 947 atcatccttctgggaaaggcactttctggtggcttataccctg---tctccgcggtgctg 1003
|| ||||||| ||||||||| |||||||| | |||||||||| |||||| ||| ||
Sbjct: 140489250 atagtccttctaggaaaggca-tttctggtagtttataccctgtcatctccgtggtattg 140489308
Query: 1004 tgtgatgatgaaataatgctgaccattaagccaggggaacatgggtcaacgtatggtggc 1063
||||||||||| |||||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 140489309 tgtgatgatgatataatgttgaccattaagccaggggaacat-ggtcaatgtatggtggc 140489367
Query: 1064 aatcccctgggctgccgagtggccatcgcagcccttgaggttttgg 1109
||||| ||||||||| ||| |||||| |||||||||||||||||||
Sbjct: 140489368 aatccactgggctgctgagcggccattgcagcccttgaggttttgg 140489413
Score = 65.9 bits (33), Expect = 5e-08
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 129 ttcgtcgtggcgttcattctacagtggcttctg 161
|||||||||||||||||||||||||||||||||
Sbjct: 140488623 ttcgtcgtggcgttcattctacagtggcttctg 140488655
>Sscrofa_Chr14
|| Length = 153851969
Score = 462 bits (233), Expect = e-127
Identities = 233/233 (100%)
Strand = Plus / Plus
Query: 57 caggttgctggtcttcctccttgaaggacaccatgttttccaaactagcccatctgcaga 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145326063 caggttgctggtcttcctccttgaaggacaccatgttttccaaactagcccatctgcaga 145326122
Query: 117 ccgtcactctccttcgtcgtggcgttcattctacagtggcttctgcgacgtctgttgcaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145326123 ccgtcactctccttcgtcgtggcgttcattctacagtggcttctgcgacgtctgttgcaa 145326182
Query: 177 cgaaaagaaccatccaagggcctccatcctctgattacatttttgagcgggaagctaaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145326183 cgaaaagaaccatccaagggcctccatcctctgattacatttttgagcgggaagctaaat 145326242
Query: 237 atggggcccacaactaccatcctttacctgtggccctggagagagggaaaggt 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145326243 atggggcccacaactaccatcctttacctgtggccctggagagagggaaaggt 145326295
Score = 444 bits (224), Expect = e-122
Identities = 227/228 (99%)
Strand = Plus / Plus
Query: 286 aggtgtttacgtttgggatgtagaaggcaggagatacttcgacttcctgagtgcctacag 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145330717 aggtgtttacgtttgggatgtagaaggcaggagatacttcgacttcctgagtgcctacag 145330776
Query: 346 cgctgtgaaccaagggcactgccacccaaagatcgtgaacgctctgaaacgtcaggtgga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145330777 cgctgtgaaccaagggcactgccacccaaagatcgtgaacgctctgaaacgtcaggtgga 145330836
Query: 406 caaactgaccctgacgtcgagggctttctacaatgacgtgctcggggaatacgaagagta 465
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 145330837 caaactgaccctgacgtcgagggctttctacaatgatgtgctcggggaatacgaagagta 145330896
Query: 466 cattacgaagcttttcaactaccacaaggtcctgcctatgaatacagg 513
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145330897 cattacgaagcttttcaactaccacaaggtcctgcctatgaatacagg 145330944
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 858 aggttctgtttattgctgacgaaatacaaacaggattggccagaactggtagatggctgg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145336368 aggttctgtttattgctgacgaaatacaaacaggattggccagaactggtagatggctgg 145336427
Query: 918 ctgttgatcatgaaaatgtcagacctgatatcatccttctgggaaaggcactttctggtg 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145336428 ctgttgatcatgaaaatgtcagacctgatatcatccttctgggaaaggcactttctggtg 145336487
Query: 978 gcttataccctgt 990
|||||||||||||
Sbjct: 145336488 gcttataccctgt 145336500
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 607 agctggaaacttttggggaagaacgttgtctgcgatctccagttccacagaccccaccag 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145334649 agctggaaacttttggggaagaacgttgtctgcgatctccagttccacagaccccaccag 145334708
Query: 667 ttacgacgggtttggaccatttatgccaggtttcgaaatcattccatatagcgatctgcc 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145334709 ttacgacgggtttggaccatttatgccaggtttcgaaatcattccatatagcgatctgcc 145334768
Query: 727 tgctctcgag 736
||||||||||
Sbjct: 145334769 tgctctcgag 145334778
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 735 agcgcgcgcttcaggatccaaacgttgctgcgttcatggtagagccaattcagggtgaag 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145335354 agcgcgcgcttcaggatccaaacgttgctgcgttcatggtagagccaattcagggtgaag 145335413
Query: 795 ctggcgtcgtggttccggatccaggctacctcgtgggcgtgcgcgagctctgcacccagc 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145335414 ctggcgtcgtggttccggatccaggctacctcgtgggcgtgcgcgagctctgcacccagc 145335473
Query: 855 accaggt 861
|||||||
Sbjct: 145335474 accaggt 145335480
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 989 gtctccgcggtgctgtgtgatgatgaaataatgctgaccattaagccaggggaacatggg 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145337657 gtctccgcggtgctgtgtgatgatgaaataatgctgaccattaagccaggggaacatggg 145337716
Query: 1049 tcaacgtatggtggcaatcccctgggctgccgagtggccatcgcagcccttgaggt 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145337717 tcaacgtatggtggcaatcccctgggctgccgagtggccatcgcagcccttgaggt 145337772
Score = 206 bits (104), Expect = 2e-50
Identities = 117/120 (97%), Gaps = 1/120 (0%)
Strand = Plus / Plus
Query: 1101 aggttttggaagaagaaa-ccttgcttgaaatgccgagaagatgggtaccatcttgagaa 1159
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 145338812 aggttttggaagaagaaaaccttgctgaaaatgccgagaagatgggtaccatcttgagaa 145338871
Query: 1160 atgaactcatgaagctcccttctgacatcgtaacgaccgtacgagggaaaggattactga 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145338872 atgaactcatgaagctcccttctgacatcgtaacgaccgtacgagggaaaggattactga 145338931
Score = 194 bits (98), Expect = 8e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 511 aggggtggaggctggagagactgcctgcaaaatcgctcgtagatggggctatacggtgaa 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145331054 aggggtggaggctggagagactgcctgcaaaatcgctcgtagatggggctatacggtgaa 145331113
Query: 571 gggtatcccaaaatacaaagcaaagatcatttttgcag 608
||||||||||||||||||||||||||||||||||||||
Sbjct: 145331114 gggtatcccaaaatacaaagcaaagatcatttttgcag 145331151
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 3 gtctctgctgctcggttgacacggtgtgttccggctcgtcgactgcggcgccgccaggt 61
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145318829 gtctctgctgctcggttgacacggtgtgttccggctcgtcgactgcggcgccgccaggt 145318887
>Sscrofa_Chr13
|| Length = 218635234
Score = 226 bits (114), Expect = 2e-56
Identities = 327/394 (82%), Gaps = 3/394 (0%)
Strand = Plus / Plus
Query: 783 ttcagggtgaagctggcgtcgtggttccggatccaggctacctcgtgggcgtgcgcgagc 842
||||||||||||| ||| | || |||| |||||||||| |||| | | |||| ||||
Sbjct: 36541469 ttcagggtgaagcaggcattgttgttctggatccaggccacctaatagctatgcgagagc 36541528
Query: 843 tctgcacccagcaccaggttctgtttattgctgacgaaatacaaacaggattggccagaa 902
|||||| |||||||| ||||||||||||| ||| |||||| | ||||||||||||||||
Sbjct: 36541529 tctgcatgcagcaccaagttctgtttattggtgatgaaataaagacaggattggccagaa 36541588
Query: 903 ctggtagatggctggctgttgatcatgaaaatgtcagacctgatatcatccttctgggaa 962
|||||||||| ||||||||| ||| ||||||| |||||| ||| |||||||| ||||
Sbjct: 36541589 atggtagatgg-tggctgttggtcacaaaaatgt-agaccttatacaatccttctaggaa 36541646
Query: 963 aggcactttctggtggcttataccctgtctccgcggtgctgtgtgatgatgaaataatgc 1022
|||||||||||||||| |||||||| | || | ||| ||||| |||||||| ||||||
Sbjct: 36541647 aggcactttctggtggtctataccctatatctacagtgttgtgtaatgatgaagtaatgc 36541706
Query: 1023 tgaccattaagccaggggaacatgggtcaacgtatggtggcaatcccctgggctgccgag 1082
|||||| ||| || |||||||||| ||| | |||||| || | | ||||| | ||
Sbjct: 36541707 tgaccactaaaccgtgggaacatggttcaccatatggtaacagtttattaggctgtcaag 36541766
Query: 1083 tggccatcgcagcccttgaggttttggaagaag-aaaccttgcttgaaatgccgagaaga 1141
||||||| ||||||||| ||||||||||||||| |||||||||| |||||| || ||||
Sbjct: 36541767 tggccattgcagcccttcaggttttggaagaagaaaaccttgctgaaaatgcagacaaga 36541826
Query: 1142 tgggtaccatcttgagaaatgaactcatgaagct 1175
| || ||||||||||||||||||||||||||||
Sbjct: 36541827 cgagtgccatcttgagaaatgaactcatgaagct 36541860
Score = 224 bits (113), Expect = 9e-56
Identities = 413/509 (81%), Gaps = 8/509 (1%)
Strand = Plus / Plus
Query: 231 ctaaatatggggcccacaactaccatcctttacctgtggccctggagagagggaaaggtg 290
|||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||
Sbjct: 36540935 ctaaatatggtgcccacagcctccatcctttacctgtaaccctggagagagggaaaggta 36540994
Query: 291 tttacgtttgggatgtagaaggcaggagatacttcgacttcctgagtgcctacagcgctg 350
|||| || ||||||||||||||||| | ||| || ||| || |||||| ||||| ||||
Sbjct: 36540995 tttatgtatgggatgtagaaggcagaaaatattttgacgtctggagtgcttacagtgctg 36541054
Query: 351 tgaaccaagggcactgccacccaaagatcgtgaacgctctgaaacgtcaggtggacaaac 410
|||||||| |||| || | |||||||| ||||| ||||||||| ||||| ||| ||
Sbjct: 36541055 tgaaccaaaggcattgtcctccaaagattgtgaatgctctgaaaagtcagaaagaccaat 36541114
Query: 411 tgaccctgacgtcgagggctttctacaatgacgtgctcggg-gaatacgaag-----agt 464
||||| | || || |||||||||||||| | ||||| || ||| || ||| |||
Sbjct: 36541115 tgaccttaacatctagggctttctacaaaaatgtgctttggagaaaacaaagtttagagt 36541174
Query: 465 acattacgaagcttttcaactaccacaaggtcctgcctatgaatacaggggtggaggctg 524
| |||| || ||||||||||||||||||||||| ||| || |||||| ||||| |||
Sbjct: 36541175 atgttactaaacttttcaactaccacaaggtcctttgtattaacacagggttggagactg 36541234
Query: 525 gagagactgcctgcaaaa-tcgctcgtagatggggctatacggtgaagggtatcccaaaa 583
||||||||| || |||| | |||| |||||| || ||||| | |||| ||||| |||
Sbjct: 36541235 gagagactgtttgtaaaacttgctcatagatgaggatataccattaaggatatcctgaaa 36541294
Query: 584 tacaaagcaaagatcatttttgcagctggaaacttttggggaagaacgttgtctgcgatc 643
|||| ||||||||| | |||||||||| |||||||| |||| ||||| |||||||| |||
Sbjct: 36541295 tacatagcaaagattagttttgcagctagaaacttt-ggggtagaacattgtctgctatc 36541353
Query: 644 tccagttccacagaccccaccagttacgacgggtttggaccatttatgccaggtttcgaa 703
||||||||| || | || |||||||| || || ||||||| |||||||||| |||| ||
Sbjct: 36541354 tccagttccccacatcctaccagttatgatggttttggactatttatgccacgttttgac 36541413
Query: 704 atcattccatatagcgatctgcctgctct 732
||||||||||| | |||||||||||||
Sbjct: 36541414 atcattccatagaataatctgcctgctct 36541442
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,979,707
Number of extensions: 135
Number of successful extensions: 135
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 16
Length of query: 1220
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1199
Effective length of database: 2,808,413,156
Effective search space: 3367287374044
Effective search space used: 3367287374044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)