Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029589.1| probable rRNA-processing protein EBP2 [Bos t... 478 e-135
>ref|NP_001029589.1| probable rRNA-processing protein EBP2 [Bos taurus].
Length = 305
Score = 478 bits (1229), Expect = e-135
Identities = 237/271 (87%), Positives = 252/271 (92%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLSG LVTDRELQ+AFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCL EF
Sbjct: 1 MDTPPLSGSDSDSDDSLVTDRELQEAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 571
KRDLEWVERLDVTLGPVPE++ PQS SQ++DPKAVDPEDDF+REMSFYRQAQAAVLAVLP
Sbjct: 61 KRDLEWVERLDVTLGPVPEISGPQSTSQNQDPKAVDPEDDFKREMSFYRQAQAAVLAVLP 120
Query: 572 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 751
RLHQLKVPTKRPTDYFAEMAK+DQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ
Sbjct: 121 RLHQLKVPTKRPTDYFAEMAKSDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 180
Query: 752 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAND 931
TEVLQKRQ+EK+HMMSAIKKYQKGFSDKLDFLEGDQKP ARSTK+GAKGQQM++GPNA
Sbjct: 181 TEVLQKRQKEKSHMMSAIKKYQKGFSDKLDFLEGDQKPAARSTKEGAKGQQMRKGPNAKR 240
Query: 932 AIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFGYGGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RYKNQKFGYGGKKKGSKWNTRESYDDVSSFR 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,723,720
Number of extensions: 1027850
Number of successful extensions: 4369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4331
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853475.1| PREDICTED: similar to Probable rRNA processing ... 468 e-132
>ref|XP_853475.1| PREDICTED: similar to Probable rRNA processing protein EBP2 (EBNA1
binding protein 2) (Nucleolar protein p40) [Canis
familiaris].
Length = 305
Score = 468 bits (1204), Expect = e-132
Identities = 235/271 (86%), Positives = 247/271 (91%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLSG LVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDV+GLKQCL EF
Sbjct: 1 MDTPPLSGSDSESEDSLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVSGLKQCLAEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 571
KRDLEWVERLDVTLGPVPEV PQS Q+KD KAVDPEDDF+REMSFYRQAQAAVLAVLP
Sbjct: 61 KRDLEWVERLDVTLGPVPEVGGPQSTPQTKDQKAVDPEDDFKREMSFYRQAQAAVLAVLP 120
Query: 572 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 751
RLHQLKVPTKRPTDYFAEMAK+DQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ
Sbjct: 121 RLHQLKVPTKRPTDYFAEMAKSDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 180
Query: 752 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAND 931
TEVLQKRQREK HMM+AIKKYQKGFSDKLDFLEGDQKPVAR TK+GAK QQMK+GP+A
Sbjct: 181 TEVLQKRQREKTHMMNAIKKYQKGFSDKLDFLEGDQKPVARKTKEGAKSQQMKKGPSAKR 240
Query: 932 AIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFG+GGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RYKNQKFGFGGKKKGSKWNTRESYDDVSSFR 271
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,508,263
Number of extensions: 1066304
Number of successful extensions: 4737
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4721
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153408.1| probable rRNA-processing protein EBP2 isofor... 451 e-127
Alignment gi|NP_006815.2| probable rRNA-processing protein EBP2 isoform 2... 449 e-126
>ref|NP_001153408.1| probable rRNA-processing protein EBP2 isoform 1 [Homo sapiens].
Length = 361
Score = 451 bits (1159), Expect = e-127
Identities = 228/273 (83%), Positives = 245/273 (89%), Gaps = 1/273 (0%)
Frame = +2
Query: 209 EMDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGE 388
EMDTPPLS LVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCL E
Sbjct: 55 EMDTPPLSDSESESDESLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAE 114
Query: 389 FKRDLEWVERLDVTLGPVPEVTAPQS-ASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAV 565
FKRDLEWVERLDVTLGPVPE+ ++ A Q+KD KAVDPEDDFQREMSFYRQAQAAVLAV
Sbjct: 115 FKRDLEWVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAV 174
Query: 566 LPRLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKK 745
LPRLHQLKVPTKRPTDYFAEMAK+D QMQKIRQKLQ KQAAME+SEKAKQLRALRKYGKK
Sbjct: 175 LPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKK 234
Query: 746 VQTEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNA 925
VQTEVLQKRQ+EKAHMM+AIKKYQKGFSDKLDFLEGDQKP+A+ K GAKGQQM++GP+A
Sbjct: 235 VQTEVLQKRQQEKAHMMNAIKKYQKGFSDKLDFLEGDQKPLAQRKKAGAKGQQMRKGPSA 294
Query: 926 NDAIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFG+GGKKKG +W+T ESYDDVSSFR
Sbjct: 295 KRRYKNQKFGFGGKKKGSKWNTRESYDDVSSFR 327
>ref|NP_006815.2| probable rRNA-processing protein EBP2 isoform 2 [Homo sapiens].
Length = 306
Score = 449 bits (1154), Expect = e-126
Identities = 227/272 (83%), Positives = 244/272 (89%), Gaps = 1/272 (0%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLS LVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCL EF
Sbjct: 1 MDTPPLSDSESESDESLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLAEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQS-ASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVL 568
KRDLEWVERLDVTLGPVPE+ ++ A Q+KD KAVDPEDDFQREMSFYRQAQAAVLAVL
Sbjct: 61 KRDLEWVERLDVTLGPVPEIGGSEAPAPQNKDQKAVDPEDDFQREMSFYRQAQAAVLAVL 120
Query: 569 PRLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKV 748
PRLHQLKVPTKRPTDYFAEMAK+D QMQKIRQKLQ KQAAME+SEKAKQLRALRKYGKKV
Sbjct: 121 PRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQAAMERSEKAKQLRALRKYGKKV 180
Query: 749 QTEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAN 928
QTEVLQKRQ+EKAHMM+AIKKYQKGFSDKLDFLEGDQKP+A+ K GAKGQQM++GP+A
Sbjct: 181 QTEVLQKRQQEKAHMMNAIKKYQKGFSDKLDFLEGDQKPLAQRKKAGAKGQQMRKGPSAK 240
Query: 929 DAIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFG+GGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RRYKNQKFGFGGKKKGSKWNTRESYDDVSSFR 272
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,551,216
Number of extensions: 1036986
Number of successful extensions: 4204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4175
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081208.1| probable rRNA-processing protein EBP2 [Mus musc... 439 e-123
>ref|NP_081208.1| probable rRNA-processing protein EBP2 [Mus musculus].
Length = 306
Score = 439 bits (1130), Expect = e-123
Identities = 223/272 (81%), Positives = 239/272 (87%), Gaps = 1/272 (0%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLS L +D+ELQDAFSRGLLKPGLNVVLE PKKAVNDV+GLKQCL EF
Sbjct: 1 MDTPPLSESDSESDACLASDQELQDAFSRGLLKPGLNVVLEKPKKAVNDVSGLKQCLAEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPK-AVDPEDDFQREMSFYRQAQAAVLAVL 568
+RDLEWVERLDVTLGPVPEV+ Q Q++D K V+PEDDFQREMSFYRQAQAAVLAVL
Sbjct: 61 RRDLEWVERLDVTLGPVPEVSETQPTPQNQDQKKGVNPEDDFQREMSFYRQAQAAVLAVL 120
Query: 569 PRLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKV 748
PRLHQL+VPTKRPTDYFAEMAK+DQQMQKIRQKLQ KQAAMEKSEKAKQLRALRKYGKKV
Sbjct: 121 PRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQKLQTKQAAMEKSEKAKQLRALRKYGKKV 180
Query: 749 QTEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAN 928
QTEVLQKRQREKAHMM+AIKKYQKGFSDKLDFLEGDQKPV RS K G KGQQM +GPNA
Sbjct: 181 QTEVLQKRQREKAHMMNAIKKYQKGFSDKLDFLEGDQKPVERSAKAGGKGQQMSKGPNAK 240
Query: 929 DAIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFG+GGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RRYKNQKFGFGGKKKGSKWNTKESYDDVSSFR 272
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,530,157
Number of extensions: 856376
Number of successful extensions: 3453
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3435
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128129.1| PREDICTED: probable rRNA-processing protein ... 500 e-142
Alignment gi|XP_003128115.1| PREDICTED: probable rRNA-processing protein ... 500 e-142
>ref|XP_003128129.1| PREDICTED: probable rRNA-processing protein EBP2-like [Sus scrofa].
Length = 307
Score = 500 bits (1287), Expect = e-142
Identities = 253/271 (93%), Positives = 256/271 (94%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLSG LVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF
Sbjct: 1 MDTPPLSGSDSDSDDSLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 571
KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP
Sbjct: 61 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 120
Query: 572 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 751
RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ
Sbjct: 121 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 180
Query: 752 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAND 931
TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNA
Sbjct: 181 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAKR 240
Query: 932 AIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFGYGGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RYKNQKFGYGGKKKGSKWNTRESYDDVSSFR 271
>ref|XP_003128115.1| PREDICTED: probable rRNA-processing protein EBP2-like [Sus scrofa].
Length = 307
Score = 500 bits (1287), Expect = e-142
Identities = 253/271 (93%), Positives = 256/271 (94%)
Frame = +2
Query: 212 MDTPPLSGXXXXXXXXLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 391
MDTPPLSG LVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF
Sbjct: 1 MDTPPLSGSDSDSDDSLVTDRELQDAFSRGLLKPGLNVVLEGPKKAVNDVNGLKQCLGEF 60
Query: 392 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 571
KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP
Sbjct: 61 KRDLEWVERLDVTLGPVPEVTAPQSASQSKDPKAVDPEDDFQREMSFYRQAQAAVLAVLP 120
Query: 572 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 751
RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ
Sbjct: 121 RLHQLKVPTKRPTDYFAEMAKTDQQMQKIRQKLQAKQAAMEKSEKAKQLRALRKYGKKVQ 180
Query: 752 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAND 931
TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNA
Sbjct: 181 TEVLQKRQREKAHMMSAIKKYQKGFSDKLDFLEGDQKPVARSTKDGAKGQQMKRGPNAKR 240
Query: 932 AIKTRKFGYGGKKKGLQWDTPESYDDVSSFR 1024
K +KFGYGGKKKG +W+T ESYDDVSSFR
Sbjct: 241 RYKNQKFGYGGKKKGSKWNTRESYDDVSSFR 271
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,729,322
Number of extensions: 662810
Number of successful extensions: 2831
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2808
Number of HSP's successfully gapped: 2
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002778
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 339 2e-90
>Sscrofa_Chr06
|| Length = 157765593
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 361 gaatggcctgaagcagtgtctgggcgaatttaagcgggatctggagtgggttgaaaggct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155486900 gaatggcctgaagcagtgtctgggcgaatttaagcgggatctggagtgggttgaaaggct 155486959
Query: 421 cgacgtgaccctgggtccggtgccggaagtcactgcccctcagtcagcctcccagagcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155486960 cgacgtgaccctgggtccggtgccggaagtcactgcccctcagtcagcctcccagagcaa 155487019
Query: 481 ggatccgaaagctgttgatccagaagacgacttccagcgtgagatgagctt 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155487020 ggatccgaaagctgttgatccagaagacgacttccagcgtgagatgagctt 155487070
Score = 248 bits (125), Expect = 5e-63
Identities = 134/137 (97%)
Strand = Plus / Plus
Query: 141 acccttttgtagccgcggagacctagggctccgctgcctcctccggcgggtgtggacgtg 200
||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 155486396 acccttttgcagcagcggagacctagggctccgctgcctcctccggcgggtgtgaacgtg 155486455
Query: 201 cgctttgcgagatggatactcccccgctctcaggttcggattccgattctgatgactctc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155486456 cgctttgcgagatggatactcccccgctctcaggttcggattccgattctgatgactctc 155486515
Query: 261 tggtcaccgaccgagag 277
|||||||||||||||||
Sbjct: 155486516 tggtcaccgaccgagag 155486532
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 532 ctaccgtcaggcccaggcagcagtgcttgcggtactgccccgcctccatcagctcaaagt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155487885 ctaccgtcaggcccaggcagcagtgcttgcggtactgccccgcctccatcagctcaaagt 155487944
Query: 592 ccctaccaagcggcccacggactattttgcagagatggccaagaccgatcagcagatgca 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155487945 ccctaccaagcggcccacggactattttgcagagatggccaagaccgatcagcagatgca 155488004
Query: 652 gaag 655
||||
Sbjct: 155488005 gaag 155488008
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 820 aggcttctctgacaagctggacttcctcgagggagatcagaagcctgttgcgcggagcac 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155491867 aggcttctctgacaagctggacttcctcgagggagatcagaagcctgttgcgcggagcac 155491926
Query: 880 gaaggacggagccaagggccagcagatgaagaggggg 916
|||||||||||||||||||||||||||||||||||||
Sbjct: 155491927 gaaggacggagccaagggccagcagatgaagaggggg 155491963
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 654 agattcgacagaagctgcaggctaaacaggcggccatggagaagtcagaaaaggctaagc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155489340 agattcgacagaagctgcaggctaaacaggcggccatggagaagtcagaaaaggctaagc 155489399
Query: 714 aactgcgagcactcaggaaatacggaaagaaggtg 748
|||||||||||||||||||||||||||||||||||
Sbjct: 155489400 aactgcgagcactcaggaaatacggaaagaaggtg 155489434
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 276 agttgcaggacgcgttttcccgggggctcttgaagccaggcctcaacgtggtgttagagg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155486613 agttgcaggacgcgttttcccgggggctcttgaagccaggcctcaacgtggtgttagagg 155486672
Query: 336 ggccgaagaaggccgtgaacgacgtg 361
||||||||||||||||||||||||||
Sbjct: 155486673 ggccgaagaaggccgtgaacgacgtg 155486698
Score = 157 bits (79), Expect = 1e-35
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 ttcggccggaagcggaagtcccgctcagagggttgagtggcggcggggagttgagggccc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 155486256 ttcggccggaagcggaagtcccgctcagagggttgagtggcggcggggaggtgagggccc 155486315
Query: 61 tggtggtgttcggatacacgtggagct 87
||||||||||||||||||||||||||
Sbjct: 155486316 cggtggtgttcggatacacgtggagct 155486342
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 744 aggtgcaaacagaggtccttcagaagcggcagcgggagaaagcccacatgatgagcgcca 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155491580 aggtgcaaacagaggtccttcagaagcggcagcgggagaaagcccacatgatgagcgcca 155491639
Query: 804 tcaagaagtaccagaaagg 822
|||||||||||||||||||
Sbjct: 155491640 tcaagaagtaccagaaagg 155491658
Score = 151 bits (76), Expect = 9e-34
Identities = 105/112 (93%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 915 ggcccaatgccaa-cgacgctataaaaaccaggaagtttggttacggtgggaagaagaaa 973
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 155493582 ggcccaatgccaaacgacgctataaaaaccag-aagtttggttacggtgggaagaagaaa 155493640
Query: 974 ggcctccagtgggatactcccgagagctatgacgatgtgtccagcttccggg 1025
||| | ||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 155493641 ggctccaagtggaatactcgcgagagctatgacgatgtgtccagcttccggg 155493692
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,623,948
Number of extensions: 76
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 9
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)