Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068907.1| protein canopy homolog 3 precursor [Bos taur... 442 e-124
Alignment gi|NP_001029425.1| protein canopy homolog 4 precursor [Bos taur... 194 1e-49
>ref|NP_001068907.1| protein canopy homolog 3 precursor [Bos taurus].
Length = 282
Score = 442 bits (1138), Expect = e-124
Identities = 220/250 (88%), Positives = 224/250 (89%), Gaps = 1/250 (0%)
Frame = +2
Query: 230 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 409
APELGPR+ARAE+TDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG
Sbjct: 33 APELGPRQARAEDTDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 92
Query: 410 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 589
VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD
Sbjct: 93 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 152
Query: 590 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 769
IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKD SC
Sbjct: 153 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDASC 212
Query: 770 LAEQWSGKKGDT-XXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQKAS 946
LAEQWSGKKGDT QRKELG ++GDPSPEEDEGIQKAS
Sbjct: 213 LAEQWSGKKGDTAALGGKKSKKKSGRAKGLGGGSSKQRKELGDLDGDPSPEEDEGIQKAS 272
Query: 947 PLTHSPPDEL 976
PLTHSPPDEL
Sbjct: 273 PLTHSPPDEL 282
>ref|NP_001029425.1| protein canopy homolog 4 precursor [Bos taurus].
Length = 239
Score = 194 bits (492), Expect = 1e-49
Identities = 92/182 (50%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
Frame = +2
Query: 257 RAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD--RKASGVKYTKSD 430
+ EE D RLPSKCEVCK +++EL+ TG+++EV++ G +LD ++ + Y+ S+
Sbjct: 24 KEEEDDTERLPSKCEVCKLLSLELQEELSRTGRSREVLELGQ-VLDTGKRKRHIPYSVSE 82
Query: 431 LRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWN 610
RL E E +C+R+LDYS+H ER GS R+AKG S+T TL LV KGVKV + IP ELW+
Sbjct: 83 TRLEEALENLCERILDYSVHAERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWD 142
Query: 611 ETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSCLAEQWSG 790
E S EV LKKQC+ ++E+FE+V+ DWY +HQE+ L FLC HVL +T+CL E W+G
Sbjct: 143 EPSVEVTFLKKQCETMLEQFEDVVGDWYFHHQEQPLQHFLCEGHVLPASETACLQETWTG 202
Query: 791 KK 796
K+
Sbjct: 203 KE 204
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,124,360
Number of extensions: 1040157
Number of successful extensions: 4243
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4205
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,273,310
Effective search space: 3482687640
Effective search space used: 3482687640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851722.1| PREDICTED: similar to trinucleotide repeat cont... 444 e-125
Alignment gi|XP_546963.2| PREDICTED: similar to CG11577-PA [Canis familia... 197 1e-50
>ref|XP_851722.1| PREDICTED: similar to trinucleotide repeat containing 5 isoform 1
[Canis familiaris].
Length = 279
Score = 444 bits (1141), Expect = e-125
Identities = 219/249 (87%), Positives = 223/249 (89%)
Frame = +2
Query: 230 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 409
APELGP +A+AEETDWVRLPSKCEVCKYVAVELKSAFEET KTKEVIDTGYGILDRKASG
Sbjct: 31 APELGPSQAQAEETDWVRLPSKCEVCKYVAVELKSAFEETSKTKEVIDTGYGILDRKASG 90
Query: 410 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 589
VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD
Sbjct: 91 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 150
Query: 590 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 769
IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC
Sbjct: 151 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 210
Query: 770 LAEQWSGKKGDTXXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQKASP 949
LAEQWSGKKGDT QRKELGG+E DPSP+EDEGIQKASP
Sbjct: 211 LAEQWSGKKGDTAALGGKKSKKKSSRVKASGSSSKQRKELGGLEEDPSPDEDEGIQKASP 270
Query: 950 LTHSPPDEL 976
LTHSPPDEL
Sbjct: 271 LTHSPPDEL 279
>ref|XP_546963.2| PREDICTED: similar to CG11577-PA [Canis familiaris].
Length = 241
Score = 197 bits (501), Expect = 1e-50
Identities = 106/238 (44%), Positives = 141/238 (59%), Gaps = 2/238 (0%)
Frame = +2
Query: 263 EETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD--RKASGVKYTKSDLR 436
E+ D RLPSKCEVCK +++EL+ TG+++EV++ G +LD ++ V Y+ S+ R
Sbjct: 25 EDDDTERLPSKCEVCKLLSLELQEELSRTGRSREVLELGQ-VLDTGKRKRHVPYSVSETR 83
Query: 437 LIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWNET 616
L E E +C+R+LDYS+H ER GS R+AKG S+T TL LV KGVKV + IP ELW+E
Sbjct: 84 LEEALENLCERILDYSVHAERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWDEP 143
Query: 617 SAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSCLAEQWSGKK 796
S EV LKKQC+ ++EEFE+VI DWY +HQE+ L FLC HVL G +T+CL E W+GK+
Sbjct: 144 SVEVTFLKKQCETMLEEFEDVIGDWYFHHQEQPLQHFLCEGHVLPGAETACLQETWTGKE 203
Query: 797 GDTXXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQKASPLTHSPPD 970
T Q K G + EE+E I H P D
Sbjct: 204 KIT---------------------DGQEKTEGEEQDQEEEEEEEMINTPGHSKHDPED 240
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,490,689
Number of extensions: 1047988
Number of successful extensions: 4242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4218
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,407,560
Effective search space: 3744037080
Effective search space used: 3744037080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006577.2| protein canopy homolog 3 precursor [Homo sapien... 436 e-122
Alignment gi|NP_689968.1| protein canopy homolog 4 precursor [Homo sapien... 193 2e-49
>ref|NP_006577.2| protein canopy homolog 3 precursor [Homo sapiens].
Length = 278
Score = 436 bits (1122), Expect = e-122
Identities = 218/252 (86%), Positives = 222/252 (88%), Gaps = 3/252 (1%)
Frame = +2
Query: 230 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 409
APELGP +A AEE DWVRLPSKCEVCKYVAVELKSAFEETGKTKEVI TGYGILD+KASG
Sbjct: 27 APELGPSQAGAEENDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIGTGYGILDQKASG 86
Query: 410 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 589
VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD
Sbjct: 87 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 146
Query: 590 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 769
IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLT+FLCANHVLKGKDTSC
Sbjct: 147 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSC 206
Query: 770 LAEQWSGKKGDT---XXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQK 940
LAEQWSGKKGDT QRKELGG+EGDPSPEEDEGIQK
Sbjct: 207 LAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLEGDPSPEEDEGIQK 266
Query: 941 ASPLTHSPPDEL 976
ASPLTHSPPDEL
Sbjct: 267 ASPLTHSPPDEL 278
>ref|NP_689968.1| protein canopy homolog 4 precursor [Homo sapiens].
Length = 248
Score = 193 bits (491), Expect = 2e-49
Identities = 92/182 (50%), Positives = 128/182 (70%), Gaps = 2/182 (1%)
Frame = +2
Query: 257 RAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD--RKASGVKYTKSD 430
+ E+ D RLPSKCEVCK ++ EL++ TG+++EV++ G +LD ++ V Y+ S+
Sbjct: 25 KEEDDDTERLPSKCEVCKLLSTELQAELSRTGRSREVLELGQ-VLDTGKRKRHVPYSVSE 83
Query: 431 LRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWN 610
RL E E +C+R+LDYS+H ER GS R+AKG S+T TL LV KGVKV + IP ELW+
Sbjct: 84 TRLEEALENLCERILDYSVHAERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWD 143
Query: 611 ETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSCLAEQWSG 790
E S EV LKKQC+ ++EEFE+++ DWY +HQE+ L FLC HVL +T+CL E W+G
Sbjct: 144 EPSVEVTYLKKQCETMLEEFEDIVGDWYFHHQEQPLQNFLCEGHVLPAAETACLQETWTG 203
Query: 791 KK 796
K+
Sbjct: 204 KE 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,667,854
Number of extensions: 1018139
Number of successful extensions: 4137
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4108
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,901,872
Effective search space: 3636056768
Effective search space used: 3636056768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082341.1| protein canopy homolog 3 precursor [Mus musculu... 416 e-116
Alignment gi|NP_848727.1| protein canopy homolog 4 precursor [Mus musculu... 196 3e-50
>ref|NP_082341.1| protein canopy homolog 3 precursor [Mus musculus].
Length = 276
Score = 416 bits (1068), Expect = e-116
Identities = 208/250 (83%), Positives = 215/250 (86%), Gaps = 1/250 (0%)
Frame = +2
Query: 230 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 409
AP+LGP A AEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD K SG
Sbjct: 27 APKLGPSPAGAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDGKGSG 86
Query: 410 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 589
VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD
Sbjct: 87 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 146
Query: 590 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 769
IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLT+FLCANHVLKGKDTSC
Sbjct: 147 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSC 206
Query: 770 LAEQWSGKKGD-TXXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQKAS 946
LAE+WSGKKGD QRKELGG+ D + EE+EG+QKAS
Sbjct: 207 LAERWSGKKGDIASLGGKKSKKKRSGVKGSSSGSSKQRKELGGLGEDANAEEEEGVQKAS 266
Query: 947 PLTHSPPDEL 976
PL HSPPDEL
Sbjct: 267 PLPHSPPDEL 276
>ref|NP_848727.1| protein canopy homolog 4 precursor [Mus musculus].
Length = 245
Score = 196 bits (498), Expect = 3e-50
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 2/182 (1%)
Frame = +2
Query: 257 RAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILD--RKASGVKYTKSD 430
+ EE D RLPSKCEVCK +++EL+ A TG+++EV++ G +LD ++ V Y+ S+
Sbjct: 31 KEEEDDTERLPSKCEVCKLLSMELQEALSRTGRSREVLELGQ-VLDTGKRKRHVPYSLSE 89
Query: 431 LRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMDIPYELWN 610
RL E E +C+R+LDY++H ER GS R+AKG S+T TL LV KGVKV + IP ELW+
Sbjct: 90 TRLEEALENLCERILDYNVHAERKGSLRYAKGQSQTMATLKGLVQKGVKVDLGIPLELWD 149
Query: 611 ETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSCLAEQWSG 790
E S EV LKKQC+ ++EEFE+V+ DWY +HQE+ L FLC HVL +T+CL E W+G
Sbjct: 150 EPSVEVTFLKKQCETMLEEFEDVVGDWYFHHQEQPLQHFLCERHVLPASETACLREAWTG 209
Query: 791 KK 796
K+
Sbjct: 210 KE 211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,952,094
Number of extensions: 847881
Number of successful extensions: 3512
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 2
Length of query: 347
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,553,887
Effective search space: 3075702315
Effective search space used: 3075702315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001103898.1| protein canopy homolog 3 precursor [Sus scro... 456 e-128
>ref|NP_001103898.1| protein canopy homolog 3 precursor [Sus scrofa].
Length = 283
Score = 456 bits (1173), Expect = e-128
Identities = 226/249 (90%), Positives = 226/249 (90%)
Frame = +2
Query: 230 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 409
APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG
Sbjct: 35 APELGPREARAEETDWVRLPSKCEVCKYVAVELKSAFEETGKTKEVIDTGYGILDRKASG 94
Query: 410 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 589
VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD
Sbjct: 95 VKYTKSDLRLIEVTETICKRLLDYSLHKERTGSNRFAKGMSETFETLHNLVHKGVKVVMD 154
Query: 590 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 769
IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC
Sbjct: 155 IPYELWNETSAEVADLKKQCDVLVEEFEEVIEDWYRNHQEEDLTQFLCANHVLKGKDTSC 214
Query: 770 LAEQWSGKKGDTXXXXXXXXXXXXXXXXXXXXXXXQRKELGGIEGDPSPEEDEGIQKASP 949
LAEQWSGKKGDT QRKELGGIEGDPSPEEDEGIQKASP
Sbjct: 215 LAEQWSGKKGDTAALGGKKSKKKSSRAKASGGGSKQRKELGGIEGDPSPEEDEGIQKASP 274
Query: 950 LTHSPPDEL 976
LTHSPPDEL
Sbjct: 275 LTHSPPDEL 283
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,541,140
Number of extensions: 698563
Number of successful extensions: 2872
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2838
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 247
Effective length of database: 8,854,232
Effective search space: 2186995304
Effective search space used: 2186995304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002792
(1041 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 527 e-147
>Sscrofa_Chr07
|| Length = 134764511
Score = 527 bits (266), Expect = e-147
Identities = 276/278 (99%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 765 gctgcctggcagaacagtggtctggcaagaagggggacacagcagccctggggggaaaga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43471690 gctgcctggcagaacagtggtctggcaagaagggggacacagcagccctggggggaaaga 43471749
Query: 825 aatccaagaagaagagcagcagggccaaggcatcgggcggtggcagcaaacagaggaagg 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43471750 aatccaagaagaagagcagcagggccaaggcatcgggcggtggcagcaaacagaggaagg 43471809
Query: 885 agctgggtggcatcgagggagaccccagtcctgaggaggatgagggcatccagaaggcct 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43471810 agctgggtggcatcgagggagaccccagtcctgaggaggatgagggcatccagaaggcct 43471869
Query: 945 cccccctcacacacagcccccctgatgagctctgagcctcacccggcagctcctgctcac 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43471870 cccccctcacacacagcccccctgatgagctctgagcctcacccggcagctcctgctcac 43471929
Query: 1005 ccaga-cccagtcctgggagctaaagggtctggacccc 1041
||||| |||||||||||||||| |||||||||||||||
Sbjct: 43471930 ccagaccccagtcctgggagctgaagggtctggacccc 43471967
Score = 394 bits (199), Expect = e-107
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 gtgctcgccgttttcctggttacgccgaggcacgtgtgcagtcccggaagcggctccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43463159 gtgctcgccgttttcctggttacgccgaggcacgtgtgcagtcccggaagcggctccggg 43463218
Query: 61 aagctgcccagcgcgcgcagcgggaggaggtgcagcccggtccgctcaggtcgggtccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43463219 aagctgcccagcgcgcgcagcgggaggaggtgcagcccggtccgctcaggtcgggtccgg 43463278
Query: 121 ctgggccatggaaccattacctgagcccacgtcccggcctcggctccggcctcggccccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43463279 ctgggccatggaaccattacctgagcccacgtcccggcctcggctccggcctcggccccg 43463338
Query: 181 ctgtcttctgcttcttccc 199
|||||||||||||||||||
Sbjct: 43463339 ctgtcttctgcttcttccc 43463357
Score = 252 bits (127), Expect = 3e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 301 agtgtgtaaatatgtcgccgtggagctgaagtcagcctttgaggaaactggcaagaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43467108 agtgtgtaaatatgtcgccgtggagctgaagtcagcctttgaggaaactggcaagaccaa 43467167
Query: 361 ggaggtgattgacacaggctatggcatcttggaccggaaagcctctggagtcaaatacac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43467168 ggaggtgattgacacaggctatggcatcttggaccggaaagcctctggagtcaaatacac 43467227
Query: 421 caagtcg 427
|||||||
Sbjct: 43467228 caagtcg 43467234
Score = 234 bits (118), Expect = 8e-59
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 644 cagtgcgacgtgctggtagaggagttcgaggaagtgatcgaggactggtacaggaaccac 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43471049 cagtgcgacgtgctggtagaggagttcgaggaagtgatcgaggactggtacaggaaccac 43471108
Query: 704 caggaggaggacctgactcagttcctctgcgccaaccacgtgctgaagggcaaggacacc 763
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 43471109 caggaggaggacctgactcagttcctctgcgccaaccacgttctgaagggcaaggacacc 43471168
Query: 764 ag 765
||
Sbjct: 43471169 ag 43471170
Score = 232 bits (117), Expect = 3e-58
Identities = 123/125 (98%)
Strand = Plus / Plus
Query: 522 agggcatgtcagagacctttgagacgctgcacaacctggtgcacaaaggggtcaaggtgg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 43470403 agggcatgtcagagacctttgagacgctgcacaacctggtgcacaaaggggtcaaagtgg 43470462
Query: 582 tgatggacatcccctacgagctgtggaacgagacctctgcggaggtggccgacctcaaga 641
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 43470463 tgatggacatcccctacgagctatggaacgagacctctgcggaggtggccgacctcaaga 43470522
Query: 642 agcag 646
|||||
Sbjct: 43470523 agcag 43470527
Score = 194 bits (98), Expect = 7e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 427 ggacttacggctaattgaagtcactgagaccatctgcaagcggctcctggactatagcct 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43468946 ggacttacggctaattgaagtcactgagaccatctgcaagcggctcctggactatagcct 43469005
Query: 487 gcacaaggagaggaccggcagcaaccggtttgccaagg 524
||||||||||||||||||||||||||||||||||||||
Sbjct: 43469006 gcacaaggagaggaccggcagcaaccggtttgccaagg 43469043
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 228 ccgccccggagctgggcccgagggaggcccgagcagaggagacagactgggttcgactgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43463386 ccgccccggagctgggcccgagggaggcccgagcagaggagacagactgggttcgactgc 43463445
Query: 288 caagcaaatgcgaag 302
|||||||||||||||
Sbjct: 43463446 caagcaaatgcgaag 43463460
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,696,780
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 7
Length of query: 1041
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1020
Effective length of database: 2,808,413,156
Effective search space: 2864581419120
Effective search space used: 2864581419120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)