Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014906.1| pyrroline-5-carboxylate reductase 3 [Bos tau... 429 e-120
Alignment gi|NP_001014957.1| pyrroline-5-carboxylate reductase 1, mitocho... 215 1e-55
Alignment gi|NP_001068649.1| pyrroline-5-carboxylate reductase 2 [Bos tau... 207 3e-53
>ref|NP_001014906.1| pyrroline-5-carboxylate reductase 3 [Bos taurus].
Length = 308
Score = 429 bits (1104), Expect = e-120
Identities = 221/273 (80%), Positives = 241/273 (88%)
Frame = +2
Query: 35 AAAAETGPRRVGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCHFRALGCRTTH 214
AAA E+G RRVGFVGAGRMAEAIAQGLI+AGKVEA++VLASAP+DRNLC FRA+GC+TTH
Sbjct: 3 AAAEESGWRRVGFVGAGRMAEAIAQGLIQAGKVEAEHVLASAPSDRNLCRFRAMGCQTTH 62
Query: 215 SNHEVLQSCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLPPGARV 394
SN EVL SCSLV FATKPH HILVSVAAGV LST+E+LLPP ARV
Sbjct: 63 SNLEVLHSCSLVFFATKPHILPAVLVEVAPAVTAEHILVSVAAGVSLSTLEKLLPPMARV 122
Query: 395 LRVSPNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSG 574
LRVSPNLPC+VQEGAMV+ARG AG+ EA+LL++LLEACGQCEEVPEAQVD HTGLSGSG
Sbjct: 123 LRVSPNLPCIVQEGAMVMARGCCAGSYEAQLLRSLLEACGQCEEVPEAQVDVHTGLSGSG 182
Query: 575 VAFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGT 754
VAFVCAFSEALAEGAIKMGMPSGLA+RIAAQTLLGTAK+LLQKGQHPAQLRTDVCTPGGT
Sbjct: 183 VAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKVLLQKGQHPAQLRTDVCTPGGT 242
Query: 755 TIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 853
TIYGLH LEQGGLRA AMSAVEAAT RA+E+ +
Sbjct: 243 TIYGLHVLEQGGLRATAMSAVEAATCRARELSR 275
>ref|NP_001014957.1| pyrroline-5-carboxylate reductase 1, mitochondrial [Bos taurus].
Length = 320
Score = 215 bits (547), Expect = 1e-55
Identities = 120/268 (44%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCHFRAL---GCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG V A ++AS+P D +L AL G TH N E +Q
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVVAAHKIMASSP-DMDLATVSALRKMGVNLTHHNKETVQ 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLP---PGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIAANIEARHIVVSCAAGVTISSIEKKLTAFQPAPKVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VV+EGA V A G HA + LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVREGATVYATGTHAQVEDGRLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +VC+PGG TI+
Sbjct: 182 FTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ + AVEA+ R +E++
Sbjct: 242 LHVLESGGFRSLLIKAVEASCTRTRELQ 269
>ref|NP_001068649.1| pyrroline-5-carboxylate reductase 2 [Bos taurus].
Length = 320
Score = 207 bits (526), Expect = 3e-53
Identities = 114/267 (42%), Positives = 161/267 (60%), Gaps = 5/267 (1%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDR--NLCHFRALGCRTTHSNHEVLQS 238
VGF+GAG++A A+A+G AG + A ++AS+P + R +G T SN E ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSALRKMGVNLTRSNKETVRH 62
Query: 239 CSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELL---PPGARVLRVSP 409
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 122
Query: 410 NLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFVC 589
N P +V+EGA V A G HA + +LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 123 NTPVLVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 590 AFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYGL 769
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +VC+PGG TI+ L
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 770 HALEQGGLRAAAMSAVEAATRRAKEMR 850
H LE GG R+ ++AVEA+ R +E++
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTRELQ 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,111,796
Number of extensions: 2042581
Number of successful extensions: 13042
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12830
Number of HSP's successfully gapped: 3
Length of query: 519
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 412
Effective length of database: 14,140,958
Effective search space: 5826074696
Effective search space used: 5826074696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_539200.1| PREDICTED: similar to pyrroline-5-carboxylate r... 433 e-121
Alignment gi|XP_537234.2| PREDICTED: similar to pyrroline-5-carboxylate r... 208 1e-53
Alignment gi|XP_540491.2| PREDICTED: similar to pyrroline-5-carboxylate r... 207 2e-53
>ref|XP_539200.1| PREDICTED: similar to pyrroline-5-carboxylate reductase-like [Canis
familiaris].
Length = 288
Score = 433 bits (1113), Expect = e-121
Identities = 224/287 (78%), Positives = 243/287 (84%), Gaps = 3/287 (1%)
Frame = +2
Query: 2 IGRPTSGRG---VMAAAAETGPRRVGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDR 172
+G SGRG AAA GP RVGFVGAGRMAEAIAQG IRAGKVEAQ+++ASAP+DR
Sbjct: 1 MGGARSGRGEDMAAAAALGPGPLRVGFVGAGRMAEAIAQGFIRAGKVEAQHIVASAPSDR 60
Query: 173 NLCHFRALGCRTTHSNHEVLQSCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVP 352
NLCHF+ALGC+TTHSN EVLQSC LV FATKP+ HILVSVAAGV
Sbjct: 61 NLCHFQALGCQTTHSNQEVLQSCLLVFFATKPYVLPAVLAEVASVVTTEHILVSVAAGVS 120
Query: 353 LSTMEELLPPGARVLRVSPNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVP 532
LST+EELLPP RVLRVSPNLPC+VQEG++V+ARGRHAG+SEA+LLQTLLEACGQCEEVP
Sbjct: 121 LSTLEELLPPTTRVLRVSPNLPCLVQEGSVVMARGRHAGSSEAKLLQTLLEACGQCEEVP 180
Query: 533 EAQVDTHTGLSGSGVAFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQH 712
EA +D HTGLSGSGVAFVC FSEALAEGAIKMGMPSGLA+RI AQTLLGTAKML QK QH
Sbjct: 181 EAHMDIHTGLSGSGVAFVCTFSEALAEGAIKMGMPSGLAHRIVAQTLLGTAKMLQQKEQH 240
Query: 713 PAQLRTDVCTPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 853
PAQLRTDVCTPGGTTIYGLHALEQGGLRAA MSAVEAAT RA+E+ K
Sbjct: 241 PAQLRTDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRARELSK 287
>ref|XP_537234.2| PREDICTED: similar to pyrroline-5-carboxylate reductase family,
member 2 (predicted) [Canis familiaris].
Length = 466
Score = 208 bits (529), Expect = 1e-53
Identities = 114/267 (42%), Positives = 161/267 (60%), Gaps = 5/267 (1%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDR--NLCHFRALGCRTTHSNHEVLQS 238
VGF+GAG++A A+A+G AG + A ++AS+P + R +G T +N E ++
Sbjct: 149 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVSSLRKMGVNLTRNNKETVRH 208
Query: 239 CSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELL---PPGARVLRVSP 409
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 209 SDVLFLAVKPHIIPFILDEIGADVQPRHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCMT 268
Query: 410 NLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFVC 589
N P VV+EGA V A G HA + +LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 269 NTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGYCTEVEEDLIDAVTGLSGSGPAYAF 328
Query: 590 AFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYGL 769
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +VC+PGG TI+ L
Sbjct: 329 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 388
Query: 770 HALEQGGLRAAAMSAVEAATRRAKEMR 850
H LE GG R+ ++AVEA+ R +E++
Sbjct: 389 HFLESGGFRSLLINAVEASCIRTRELQ 415
>ref|XP_540491.2| PREDICTED: similar to pyrroline-5-carboxylate reductase 1 isoform 1
[Canis familiaris].
Length = 320
Score = 207 bits (527), Expect = 2e-53
Identities = 117/268 (43%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNL---CHFRALGCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG V A ++AS+P D +L R +G T N E ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGIVAAHKIMASSP-DMDLPTVSGLRKMGVNLTPHNKETVR 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELL---PPGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIGAHIEDRHIVVSCAAGVTISSIEKKLMAFQPAPKVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VV+EGA V A G HA + LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVREGATVYATGTHAQVEDGRLLEQLMGSVGFCTEVEEDLIDAVTGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
EALA+G +KMG+P LA R+ AQ LLG +KMLL +HP QLR +VC+PGG TI+
Sbjct: 182 FTALEALADGGVKMGLPRRLAVRLGAQALLGASKMLLDSEKHPGQLRDNVCSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ ++AVEA+ R +E++
Sbjct: 242 LHVLESGGFRSLLINAVEASCIRTRELQ 269
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,568,764
Number of extensions: 2095993
Number of successful extensions: 13048
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12708
Number of HSP's successfully gapped: 3
Length of query: 519
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 412
Effective length of database: 15,307,552
Effective search space: 6306711424
Effective search space used: 6306711424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075566.2| pyrroline-5-carboxylate reductase 3 [Homo sapie... 438 e-123
Alignment gi|NP_037460.2| pyrroline-5-carboxylate reductase 2 [Homo sapie... 210 3e-54
Alignment gi|NP_008838.2| pyrroline-5-carboxylate reductase 1, mitochondr... 207 2e-53
Alignment gi|NP_722546.1| pyrroline-5-carboxylate reductase 1, mitochondr... 207 2e-53
>ref|NP_075566.2| pyrroline-5-carboxylate reductase 3 [Homo sapiens].
Length = 286
Score = 438 bits (1126), Expect = e-123
Identities = 225/283 (79%), Positives = 241/283 (85%)
Frame = +2
Query: 5 GRPTSGRGVMAAAAETGPRRVGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCH 184
G + RG AAAE PRRVGFVGAGRMA AIAQGLIRAGKVEAQ++LASAPTDRNLCH
Sbjct: 3 GERSGVRGNKMAAAEPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCH 62
Query: 185 FRALGCRTTHSNHEVLQSCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTM 364
F+ALGCRTTHSN EVLQSC LVIFATKPH HILVSVAAGV LST+
Sbjct: 63 FQALGCRTTHSNQEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTL 122
Query: 365 EELLPPGARVLRVSPNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQV 544
EELLPP RVLRV PNLPCVVQEGA+V+ARGRH G+SE +LLQ LLEACG+CEEVPEA V
Sbjct: 123 EELLPPNTRVLRVLPNLPCVVQEGAIVMARGRHVGSSETKLLQHLLEACGRCEEVPEAYV 182
Query: 545 DTHTGLSGSGVAFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQL 724
D HTGLSGSGVAFVCAFSEALAEGA+KMGMPS LA+RIAAQTLLGTAKMLL +GQHPAQL
Sbjct: 183 DIHTGLSGSGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQL 242
Query: 725 RTDVCTPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 853
R+DVCTPGGTTIYGLHALEQGGLRAA MSAVEAAT RAKE+ +
Sbjct: 243 RSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELSR 285
>ref|NP_037460.2| pyrroline-5-carboxylate reductase 2 [Homo sapiens].
Length = 320
Score = 210 bits (534), Expect = 3e-54
Identities = 117/268 (43%), Positives = 163/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNL---CHFRALGCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG + A ++AS+P + NL R +G T SN E ++
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASSP-EMNLPTVSALRKMGVNLTRSNKETVK 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELL---PPGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VVQEGA V A G HA + +LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVQEGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
+ALA+G +KMG+P LA ++ AQ LLG AKMLL QHP QL+ +VC+PGG TI+
Sbjct: 182 FMALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ ++AVEA+ R +E++
Sbjct: 242 LHFLESGGFRSLLINAVEASCIRTRELQ 269
>ref|NP_008838.2| pyrroline-5-carboxylate reductase 1, mitochondrial isoform 1 [Homo
sapiens].
Length = 319
Score = 207 bits (528), Expect = 2e-53
Identities = 118/268 (44%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCHFRAL---GCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG + A ++AS+P D +L AL G + T N E +Q
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP-DMDLATVSALRKMGVKLTPHNKETVQ 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLP---PGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P RV+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VV+EGA V A G HA + L++ LL + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +V +PGG TI+
Sbjct: 182 FTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ ++AVEA+ R +E++
Sbjct: 242 LHVLESGGFRSLLINAVEASCIRTRELQ 269
>ref|NP_722546.1| pyrroline-5-carboxylate reductase 1, mitochondrial isoform 2 [Homo
sapiens].
Length = 316
Score = 207 bits (528), Expect = 2e-53
Identities = 118/268 (44%), Positives = 161/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCHFRAL---GCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG + A ++AS+P D +L AL G + T N E +Q
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP-DMDLATVSALRKMGVKLTPHNKETVQ 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLP---PGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P RV+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VV+EGA V A G HA + L++ LL + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +V +PGG TI+
Sbjct: 182 FTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ ++AVEA+ R +E++
Sbjct: 242 LHVLESGGFRSLLINAVEASCIRTRELQ 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,079,967
Number of extensions: 2020261
Number of successful extensions: 12022
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11787
Number of HSP's successfully gapped: 4
Length of query: 519
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 412
Effective length of database: 14,770,016
Effective search space: 6085246592
Effective search space used: 6085246592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079688.2| pyrroline-5-carboxylate reductase 3 [Mus muscul... 417 e-116
Alignment gi|NP_598466.1| pyrroline-5-carboxylate reductase 2 [Mus muscul... 205 7e-53
Alignment gi|NP_659044.1| pyrroline-5-carboxylate reductase 1, mitochondr... 204 2e-52
>ref|NP_079688.2| pyrroline-5-carboxylate reductase 3 [Mus musculus].
Length = 274
Score = 417 bits (1072), Expect = e-116
Identities = 214/272 (78%), Positives = 231/272 (84%)
Frame = +2
Query: 38 AAAETGPRRVGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNLCHFRALGCRTTHS 217
AA + PRRVGFVGAGRMAEAIA+GLI+AGKVEA+ VLASAPTD NLCHFRALGC+TTHS
Sbjct: 2 AATMSEPRRVGFVGAGRMAEAIARGLIQAGKVEAKQVLASAPTDNNLCHFRALGCQTTHS 61
Query: 218 NHEVLQSCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLPPGARVL 397
NHEVLQ+C LVIFATKP HI+VSVAAG+ LSTME LLPP RVL
Sbjct: 62 NHEVLQNCPLVIFATKPQVLPTVLAEVAPIVTTEHIIVSVAAGISLSTMEGLLPPNTRVL 121
Query: 398 RVSPNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGV 577
RVSPNLPCVVQEGAMV+ARG HAGN +AELLQ LLEACGQC EVPE+ VD HTGLSGSGV
Sbjct: 122 RVSPNLPCVVQEGAMVMARGHHAGNDDAELLQNLLEACGQCIEVPESYVDIHTGLSGSGV 181
Query: 578 AFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTT 757
AFVC FSEALAEGAIKMGMPSGLA+RIAAQTLLGTAKML Q+G+HPAQLRTDV TP GTT
Sbjct: 182 AFVCTFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKMLQQEGKHPAQLRTDVLTPAGTT 241
Query: 758 IYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 853
I+GLHALE+GG RAA MSAVEAAT RAKE+ K
Sbjct: 242 IHGLHALERGGFRAATMSAVEAATCRAKELSK 273
>ref|NP_598466.1| pyrroline-5-carboxylate reductase 2 [Mus musculus].
Length = 320
Score = 205 bits (522), Expect = 7e-53
Identities = 115/268 (42%), Positives = 162/268 (60%), Gaps = 6/268 (2%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDRNL---CHFRALGCRTTHSNHEVLQ 235
VGF+GAG++A A+A+G AG + A ++AS+P D +L R +G T SN + ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGVLSAHKIIASSP-DMDLPTVSALRRMGVNLTRSNKDTVR 61
Query: 236 SCSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELL---PPGARVLRVS 406
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 62 HSDVLFLAVKPHIIPFILDEIGADVQERHIVVSCAAGVTISSVEKKLMAFQPAPKVIRCM 121
Query: 407 PNLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFV 586
N P VV+EGA V A G HA + +LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 122 TNTPVVVREGATVYATGTHALVEDGKLLEQLMSSVGFCTEVEEDLIDAITGLSGSGPAYA 181
Query: 587 CAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYG 766
+ALA+G +KMG+P LA R+ AQ LLG AKMLL HP QL+ +VC+PGG TI+
Sbjct: 182 FMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLLDSEDHPGQLKDNVCSPGGATIHA 241
Query: 767 LHALEQGGLRAAAMSAVEAATRRAKEMR 850
LH LE GG R+ ++AVEA+ R +E++
Sbjct: 242 LHFLESGGFRSLLINAVEASCIRTRELQ 269
>ref|NP_659044.1| pyrroline-5-carboxylate reductase 1, mitochondrial [Mus musculus].
Length = 309
Score = 204 bits (519), Expect = 2e-52
Identities = 111/267 (41%), Positives = 159/267 (59%), Gaps = 5/267 (1%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPT--DRNLCHFRALGCRTTHSNHEVLQS 238
VGF+GAG++A A+A+G AG + A ++AS+P + R +G T N E ++
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDQATVSALRKIGVNLTPHNKETVRH 62
Query: 239 CSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLP---PGARVLRVSP 409
++ A KPH HI+VS AAGV ++++E+ L P +V+R
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGANIEDRHIVVSCAAGVTINSIEKKLTAFQPAPKVIRCMT 122
Query: 410 NLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFVC 589
N P VV+EG V A G HA + L++ L+ + G C EV E +D TGLSGSG A+
Sbjct: 123 NTPVVVREGVTVYATGTHAQVEDGRLVEQLMGSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 590 AFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYGL 769
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP+QL+ +VC+PGG TI+ L
Sbjct: 183 TALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPSQLKDNVCSPGGATIHAL 242
Query: 770 HALEQGGLRAAAMSAVEAATRRAKEMR 850
H LE GG R+ ++AVEA+ R +E++
Sbjct: 243 HVLESGGFRSLLINAVEASCIRTRELQ 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,945,328
Number of extensions: 1642318
Number of successful extensions: 9715
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9510
Number of HSP's successfully gapped: 3
Length of query: 519
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 413
Effective length of database: 12,433,743
Effective search space: 5135135859
Effective search space used: 5135135859
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130590.1| PREDICTED: pyrroline-5-carboxylate reductase... 208 6e-54
Alignment gi|XP_003125994.2| PREDICTED: pyrroline-5-carboxylate reductase... 179 4e-45
Alignment gi|XP_003360607.1| PREDICTED: pyrroline-5-carboxylate reductase... 113 3e-25
>ref|XP_003130590.1| PREDICTED: pyrroline-5-carboxylate reductase 2-like [Sus scrofa].
Length = 320
Score = 208 bits (530), Expect = 6e-54
Identities = 115/267 (43%), Positives = 161/267 (60%), Gaps = 5/267 (1%)
Frame = +2
Query: 65 VGFVGAGRMAEAIAQGLIRAGKVEAQYVLASAPTDR--NLCHFRALGCRTTHSNHEVLQS 238
VGF+GAG++A A+A+G AG + A ++AS+P + R +G T SN E ++
Sbjct: 3 VGFIGAGQLACALARGFTAAGILSAHKIIASSPEMDLPTVAALRKMGVNLTRSNKETVRH 62
Query: 239 CSLVIFATKPHXXXXXXXXXXXXXXXXHILVSVAAGVPLSTMEELLP---PGARVLRVSP 409
++ A KPH HI+VS AAGV +S++E+ L P +V+R
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTISSVEKKLQAFQPAPKVIRCMT 122
Query: 410 NLPCVVQEGAMVLARGRHAGNSEAELLQTLLEACGQCEEVPEAQVDTHTGLSGSGVAFVC 589
N P VV+EGA V A G HA + +LL+ L+ + G C EV E +D TGLSGSG A+
Sbjct: 123 NTPVVVREGATVYATGTHALVEDGQLLEQLMSSVGFCTEVEEDLIDAVTGLSGSGPAYAF 182
Query: 590 AFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVCTPGGTTIYGL 769
+ALA+G +KMG+P LA R+ AQ LLG AKMLL QHP QL+ +VC+PGG TI+ L
Sbjct: 183 MALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHAL 242
Query: 770 HALEQGGLRAAAMSAVEAATRRAKEMR 850
H LE GG R+ ++AVEA+ R +E++
Sbjct: 243 HFLESGGFRSLLINAVEASCIRTRELQ 269
>ref|XP_003125994.2| PREDICTED: pyrroline-5-carboxylate reductase 3-like [Sus scrofa].
Length = 179
Score = 179 bits (454), Expect = 4e-45
Identities = 92/98 (93%), Positives = 94/98 (95%)
Frame = +2
Query: 560 LSGSGVAFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVC 739
L +G + VCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVC
Sbjct: 82 LGPAGGSQVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQKGQHPAQLRTDVC 141
Query: 740 TPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 853
TPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK
Sbjct: 142 TPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMRK 179
>ref|XP_003360607.1| PREDICTED: pyrroline-5-carboxylate reductase 1, mitochondrial-like,
partial [Sus scrofa].
Length = 163
Score = 113 bits (283), Expect = 3e-25
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 2/111 (1%)
Frame = +2
Query: 524 EVPEAQVDTHTGLSGSGVAFVCAFSEALAEGAIKMGMPSGLAYRIAAQTLLGTAKMLLQK 703
EV E +D TGLSGSG A+ +ALA+G +KMG+P LA R+ AQ LLG AKMLL
Sbjct: 2 EVEEDLIDAVTGLSGSGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDS 61
Query: 704 GQHPAQLR--TDVCTPGGTTIYGLHALEQGGLRAAAMSAVEAATRRAKEMR 850
QHP QL+ +VC+PGG TI+ LH LE GG R+ ++AVEA+ R +E++
Sbjct: 62 EQHPGQLKDNXNVCSPGGATIHALHVLESGGFRSLLINAVEASCIRTRELQ 112
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,637,587
Number of extensions: 1330051
Number of successful extensions: 8391
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8226
Number of HSP's successfully gapped: 3
Length of query: 519
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,779,541
Effective search space: 3652289056
Effective search space used: 3652289056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002797
(1558 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1150 0.0
Sscrofa_Chr01 74 3e-10
>Sscrofa_Chr04
|| Length = 143465943
Score = 1150 bits (580), Expect = 0.0
Identities = 625/636 (98%), Gaps = 3/636 (0%)
Strand = Plus / Plus
Query: 915 gtggactctccagcctgcgggctgctggaggcactgcttgaggtctggggcaatagaggg 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013343 gtggactctccagcctgcgggctgctggaggcactgcttgaggtctggggcaatagaggg 1013402
Query: 975 gacgggtcctgaccacacgactgggtgtggaccccttcccagaccccaggctccagggga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013403 gacgggtcctgaccacacgactgggtgtggaccccttcccagaccccaggctccagggga 1013462
Query: 1035 gtggcaggtagagctgggtcaagagtcctgcagggtcccagggcctctgactgcaggatt 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013463 gtggcaggtagagctgggtcaagagtcctgcagggtcccagggcctctgactgcaggatt 1013522
Query: 1095 tggttctttggtgtgtccgcgaagggacccccaggccgggagagccacgagcttggggcc 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013523 tggttctttggtgtgtccgcgaagggacccccaggccgggagagccacgagcttggggcc 1013582
Query: 1155 tgagcaagggcatggcgcctttggggaggcggggttgtactgcccccaacattcacaggg 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013583 tgagcaagggcatggcgcctttggggaggcggggttgtactgcccccaacattcacaggg 1013642
Query: 1215 gtccccaccatgccgcgctggtgcccctgccttccacccaccaggtggagaggctgaggc 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013643 gtccccaccatgccgcgctggtgcccctgccttccacccaccaggtggagaggctgaggc 1013702
Query: 1275 ccccttctctgctgtacccgccagctgggaggctggaggcagggccatctggatttgcat 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013703 ccccttctctgctgtacccgccagctgggaggctggaggcagggccatctggatttgcat 1013762
Query: 1335 ctgtaaagcagcgccctgcacacagcctcccacccactccccgcactcgaggccccgcct 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013763 ctgtaaagcagcgccctgcacacagcctcccacccactccccgcactcgaggccccgcct 1013822
Query: 1395 gccctccctggtggtctgtcctctaccccgccggctggcctcaaccggccagctggccct 1454
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 1013823 gccctccctggtggtctgtcctctaccccgccgcctggcctccaccggccagctggccct 1013882
Query: 1455 cagccagccacagcttggtcgaccctggtctttcc-ctgttagaaggatcggtccgaagt 1513
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct: 1013883 cagccagccacagcttgtccgaccctggtccttccactgttagaaggatcggtccgagtc 1013942
Query: 1514 cattcctggcac-tgctgcctttacttttgaaacgc 1548
||||||| |||| |||||||||||||||||||||||
Sbjct: 1013943 cattcct-gcacttgctgcctttacttttgaaacgc 1013977
Score = 389 bits (196), Expect = e-105
Identities = 196/196 (100%)
Strand = Plus / Plus
Query: 676 ggggacagccaagatgcttctgcagaaggggcagcacccggctcagctgcggaccgacgt 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013104 ggggacagccaagatgcttctgcagaaggggcagcacccggctcagctgcggaccgacgt 1013163
Query: 736 gtgcacgccgggcggtaccaccatctacgggctgcacgcgctggagcagggcgggctgcg 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013164 gtgcacgccgggcggtaccaccatctacgggctgcacgcgctggagcagggcgggctgcg 1013223
Query: 796 ggcggctgccatgagcgcggtggaggccgccacgcgccgggccaaggagatgaggaagta 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013224 ggcggctgccatgagcgcggtggaggccgccacgcgccgggccaaggagatgaggaagta 1013283
Query: 856 aggtgccagcgccgga 871
||||||||||||||||
Sbjct: 1013284 aggtgccagcgccgga 1013299
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 584 gtatgtgccttctcggaggccttggccgaaggcgccatcaagatgggcatgcccagtggc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012808 gtatgtgccttctcggaggccttggccgaaggcgccatcaagatgggcatgcccagtggc 1012867
Query: 644 ctggcataccgcattgctgcccagaccctgctgg 677
||||||||||||||||||||||||||||||||||
Sbjct: 1012868 ctggcataccgcattgctgcccagaccctgctgg 1012901
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 123 caggaaaagtggaagcccagtacgtgctggccagcgcacccactgacaggaacctctgcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006691 caggaaaagtggaagcccagtacgtgctggccagcgcacccactgacaggaacctctgcc 1006632
Query: 183 acttccggg 191
|||||||||
Sbjct: 1006631 acttccggg 1006623
Score = 61.9 bits (31), Expect = 1e-06
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 96 aggcgatcgctcaaggcctcatccgagcagg 126
|||||||||||||||||||||||||||||||
Sbjct: 1008560 aggcgatcgctcaaggcctcatccgagcagg 1008530
>Sscrofa_Chr01
|| Length = 315321322
Score = 73.8 bits (37), Expect = 3e-10
Identities = 109/133 (81%)
Strand = Plus / Plus
Query: 654 gcattgctgcccagaccctgctggggacagccaagatgcttctgcagaaggggcagcacc 713
|||||||||||||| ||||||||| | ||||||||||| ||| ||||| | |||||
Sbjct: 67462790 gcattgctgcccaggccctgctggaaagagccaagatgcgtctctggaaggtgaggcacc 67462849
Query: 714 cggctcagctgcggaccgacgtgtgcacgccgggcggtaccaccatctacgggctgcacg 773
| |||||||||||||||| ||| ||| |||| | || |||||||| ||| |||| || |
Sbjct: 67462850 cagctcagctgcggaccggcgtccgcaagccgtggggaaccaccatttactggctccaag 67462909
Query: 774 cgctggagcaggg 786
||| |||||||||
Sbjct: 67462910 cgcaggagcaggg 67462922
Score = 73.8 bits (37), Expect = 3e-10
Identities = 109/133 (81%)
Strand = Plus / Plus
Query: 654 gcattgctgcccagaccctgctggggacagccaagatgcttctgcagaaggggcagcacc 713
|||||||||||||| ||||||||| | ||||||||||| ||| ||||| | |||||
Sbjct: 67527237 gcattgctgcccaggccctgctggaaagagccaagatgcgtctctggaaggtgaggcacc 67527296
Query: 714 cggctcagctgcggaccgacgtgtgcacgccgggcggtaccaccatctacgggctgcacg 773
| |||||||||||||||| ||| ||| |||| | || |||||||| ||| |||| || |
Sbjct: 67527297 cagctcagctgcggaccggcgtccgcaagccgtggggaaccaccatttactggctccaag 67527356
Query: 774 cgctggagcaggg 786
||| |||||||||
Sbjct: 67527357 cgcaggagcaggg 67527369
Score = 61.9 bits (31), Expect = 1e-06
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 493 gaccctgctggaggcctgcgggcagtgcgaggaggtgcccgaggcccaggt 543
|||||||||| |||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 67462657 gaccctgctgaaggcctgcggacagagggaggaggagcccgaggcccaggt 67462707
Score = 61.9 bits (31), Expect = 1e-06
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 493 gaccctgctggaggcctgcgggcagtgcgaggaggtgcccgaggcccaggt 543
|||||||||| |||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 67527104 gaccctgctgaaggcctgcggacagagggaggaggagcccgaggcccaggt 67527154
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,079,798
Number of extensions: 323
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 9
Length of query: 1558
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1537
Effective length of database: 2,808,413,156
Effective search space: 4316531020772
Effective search space used: 4316531020772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)