Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029658.1| mediator of RNA polymerase II transcription ... 430 e-121
>ref|NP_001029658.1| mediator of RNA polymerase II transcription subunit 4 [Bos taurus].
Length = 270
Score = 430 bits (1106), Expect = e-121
Identities = 217/233 (93%), Positives = 219/233 (93%)
Frame = +2
Query: 125 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 304
TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN
Sbjct: 26 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 85
Query: 305 QGKIHHEMQLLEKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISS 484
QGKIHHEMQ+LEKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISS
Sbjct: 86 QGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 145
Query: 485 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 664
EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD
Sbjct: 146 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 205
Query: 665 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHS+DFLLEPPGHNKENEDDVEVM
Sbjct: 206 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSHDFLLEPPGHNKENEDDVEVM 258
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,525,214
Number of extensions: 706758
Number of successful extensions: 2209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,273,310
Effective search space: 3568327500
Effective search space used: 3568327500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534120.2| PREDICTED: similar to Mediator complex subunit ... 424 e-119
Alignment gi|XP_854517.1| PREDICTED: similar to Mediator complex subunit ... 419 e-117
>ref|XP_534120.2| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA
polymerase II transcription subunit 4) (Vitamin D3
receptor-interacting protein complex 36 kDa component)
(DRIP36) (Activator-recruited cofactor 36 kDa component)
(ARC36) (TRAP/SMCC/PC2 subunit... [Canis familiaris].
Length = 363
Score = 424 bits (1090), Expect = e-119
Identities = 214/233 (91%), Positives = 216/233 (92%)
Frame = +2
Query: 125 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 304
TRERLLSALEDLEVLSRELIEMLAISRNQKLL EENQVLELLIHRDGEFQELMKLALN
Sbjct: 119 TRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIHRDGEFQELMKLALN 178
Query: 305 QGKIHHEMQLLEKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISS 484
QGKIHHEMQ+LEKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISS
Sbjct: 179 QGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 238
Query: 485 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 664
EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD
Sbjct: 239 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 298
Query: 665 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
ALAAGRLPDVLAPQYPWQSNDM+MNMLPPNHSNDFLLEPPGHNKENEDDVEVM
Sbjct: 299 ALAAGRLPDVLAPQYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 351
>ref|XP_854517.1| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA
polymerase II transcription subunit 4) (Vitamin D3
receptor-interacting protein complex 36 kDa component)
(DRIP36) (Activator-recruited cofactor 36 kDa component)
(ARC36) (TRAP/SMCC/PC2 subunit... [Canis familiaris].
Length = 297
Score = 419 bits (1077), Expect = e-117
Identities = 212/233 (90%), Positives = 214/233 (91%)
Frame = +2
Query: 125 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 304
TRERLLSALEDLEVLSRELIEMLAISRNQKLL EENQVLELLIHRDGEFQELMKLALN
Sbjct: 53 TRERLLSALEDLEVLSRELIEMLAISRNQKLLPPDEENQVLELLIHRDGEFQELMKLALN 112
Query: 305 QGKIHHEMQLLEKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISS 484
QGKIHHEM +LEKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISS
Sbjct: 113 QGKIHHEMHVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 172
Query: 485 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 664
EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD
Sbjct: 173 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 232
Query: 665 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
ALAAGRLPDVLA QYPWQSNDM+MNMLPPNHSNDFLLEPPGHNKENEDDVEVM
Sbjct: 233 ALAAGRLPDVLASQYPWQSNDMSMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 285
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,923,641
Number of extensions: 728244
Number of successful extensions: 2280
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2267
Number of HSP's successfully gapped: 2
Length of query: 353
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,407,560
Effective search space: 3836482440
Effective search space used: 3836482440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054885.1| mediator of RNA polymerase II transcription sub... 427 e-120
>ref|NP_054885.1| mediator of RNA polymerase II transcription subunit 4 [Homo
sapiens].
Length = 270
Score = 427 bits (1099), Expect = e-120
Identities = 214/233 (91%), Positives = 219/233 (93%)
Frame = +2
Query: 125 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 304
TRERLLSALEDLEVLSRELIEMLAISRNQKLLQ+GEENQVLELLIHRDGEFQELMKLALN
Sbjct: 26 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQAGEENQVLELLIHRDGEFQELMKLALN 85
Query: 305 QGKIHHEMQLLEKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISS 484
QGKIHHEMQ+LEKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISS
Sbjct: 86 QGKIHHEMQVLEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 145
Query: 485 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 664
EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD
Sbjct: 146 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 205
Query: 665 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
ALAAGRLPDVLAPQYPWQSNDM+MNMLPPNHS+DFLLEPPGHNKENEDDVE+M
Sbjct: 206 ALAAGRLPDVLAPQYPWQSNDMSMNMLPPNHSSDFLLEPPGHNKENEDDVEIM 258
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,332,221
Number of extensions: 717667
Number of successful extensions: 2235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2233
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,868,908
Effective search space: 3702358092
Effective search space used: 3702358092
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080395.1| mediator of RNA polymerase II transcription sub... 418 e-117
>ref|NP_080395.1| mediator of RNA polymerase II transcription subunit 4 [Mus
musculus].
Length = 270
Score = 418 bits (1074), Expect = e-117
Identities = 210/233 (90%), Positives = 216/233 (92%)
Frame = +2
Query: 125 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALN 304
TRERLLSALEDLEVLSRELIEMLAISRNQKLLQ EENQVLELLIHRDG+FQELMKLALN
Sbjct: 26 TRERLLSALEDLEVLSRELIEMLAISRNQKLLQLEEENQVLELLIHRDGDFQELMKLALN 85
Query: 305 QGKIHHEMQLLEKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISS 484
QGK+HHEMQ LEKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISS
Sbjct: 86 QGKVHHEMQALEKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISS 145
Query: 485 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGD 664
EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPST+GVNGHLPGD
Sbjct: 146 EEIIKYAHRISASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTSGVNGHLPGD 205
Query: 665 ALAAGRLPDVLAPQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
ALAAGRLPDVLAPQYPWQSNDM++NMLPPNHS+DFLLEPPGHNKENEDDVEVM
Sbjct: 206 ALAAGRLPDVLAPQYPWQSNDMSVNMLPPNHSSDFLLEPPGHNKENEDDVEVM 258
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,608,531
Number of extensions: 613376
Number of successful extensions: 1922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1914
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,553,887
Effective search space: 3151025637
Effective search space used: 3151025637
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131021.2| PREDICTED: hypothetical protein LOC100520327... 408 e-114
>ref|XP_003131021.2| PREDICTED: hypothetical protein LOC100520327 [Sus scrofa].
Length = 561
Score = 408 bits (1049), Expect = e-114
Identities = 205/222 (92%), Positives = 206/222 (92%)
Frame = +2
Query: 158 LEVLSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQLL 337
L + SRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQLL
Sbjct: 328 LVLFSRELIEMLAISRNQKLLQSGEENQVLELLIHRDGEFQELMKLALNQGKIHHEMQLL 387
Query: 338 EKEVEKRDSDXXXXXXXXXXXXXXLATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRIS 517
EKEVEKRDSD LATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRIS
Sbjct: 388 EKEVEKRDSDIQQLQKQLKEAEQILATAVYQAKEKLKSIEKARKGAISSEEIIKYAHRIS 447
Query: 518 ASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVL 697
ASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVL
Sbjct: 448 ASNAVCAPLTWVPGDPRRPYPTDLEMRSGLLGQMNNPSTNGVNGHLPGDALAAGRLPDVL 507
Query: 698 APQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 823
APQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM
Sbjct: 508 APQYPWQSNDMAMNMLPPNHSNDFLLEPPGHNKENEDDVEVM 549
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,244,032
Number of extensions: 451914
Number of successful extensions: 1408
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1406
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 253
Effective length of database: 8,854,232
Effective search space: 2240120696
Effective search space used: 2240120696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002800
(1059 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 624 e-176
>Sscrofa_Chr11
|| Length = 87690581
Score = 624 bits (315), Expect = e-176
Identities = 362/376 (96%), Gaps = 3/376 (0%)
Strand = Plus / Plus
Query: 687 cagatgttcttgccccccagtatccgtggcagtcaaatgatatggcaatgaatatgttac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20018769 cagatgttcttgccccccagtatccgtggcagtcaaatgatatggcaatgaatatgttac 20018828
Query: 747 caccaaatcacagtaatgactttttgttggagcctccagggcacaataaagaaaatgaag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20018829 caccaaatcacagtaatgactttttgttggagcctccagggcacaataaagaaaatgaag 20018888
Query: 807 atgacgtagaggtcatgtcaacagactcctcaagcagtagcagtgactctgattaaagaa 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20018889 atgacgtagaggtcatgtcaacagactcctcaagcagtagcagtgactctgattaaagaa 20018948
Query: 867 aatgtgacnnnnnnngcatacagaattgaatattatagaaatcggcttcttaaacagcag 926
|||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20018949 aatgtgacaaaaaaagcatacagaattgaatattatagaaatcggcttcttaaacagcag 20019008
Query: 927 caaatctttaaaagccaggtgatactgtagtgaaagtgtgccattgttaaaaattatggt 986
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 20019009 caaacctttaaaagccaggtgatactgtagtgaaagtgtgccatcgttaaaaattattgt 20019068
Query: 987 ggactttttgaaacc-aaaatcatggtttcgtttctg-accactaggggaatagagaaaa 1044
|||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 20019069 ggactttttgaagccaaaaatcatggtttcgtttctgaaccactaggggaatagagaaaa 20019128
Query: 1045 ac-aaatttaccgttg 1059
|| |||||||||||||
Sbjct: 20019129 acaaaatttaccgttg 20019144
Score = 339 bits (171), Expect = 2e-90
Identities = 174/175 (99%)
Strand = Plus / Plus
Query: 239 caggtcctggagttgttaattcacagagatggggaatttcaagaactaatgaaattagca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20011961 caggtcctggagttgttaattcacagagatggggaatttcaagaactaatgaaattagca 20012020
Query: 299 cttaatcaggggaaaattcatcatgaaatgcaacttttagaaaaagaagtagaaaagaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20012021 cttaatcaggggaaaattcatcatgaaatgcaacttttagaaaaagaagtagaaaagaga 20012080
Query: 359 gacagtgatattcagcaactacaaaaacagctaaaggaagcagaacagatactgg 413
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 20012081 gacagtgatattcagcaactgcaaaaacagctaaaggaagcagaacagatactgg 20012135
Score = 266 bits (134), Expect = 2e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 556 aggggacccacggagaccataccctactgatttggagatgagaagtggattactgggtca 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20016751 aggggacccacggagaccataccctactgatttggagatgagaagtggattactgggtca 20016810
Query: 616 aatgaataatccttccactaatggagtgaacggtcatttaccaggagacgcacttgcagc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20016811 aatgaataatccttccactaatggagtgaacggtcatttaccaggagacgcacttgcagc 20016870
Query: 676 aggcaggctgccag 689
||||||||||||||
Sbjct: 20016871 aggcaggctgccag 20016884
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 469 aggtgctatctcctctgaagaaatcattaagtacgcacataggattagtgcaagtaacgc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20015323 aggtgctatctcctctgaagaaatcattaagtacgcacataggattagtgcaagtaacgc 20015382
Query: 529 tgtgtgcgccccactgacctgggtcccagg 558
||||||||||||||||||||||||||||||
Sbjct: 20015383 tgtgtgcgccccactgacctgggtcccagg 20015412
Score = 141 bits (71), Expect = 9e-31
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 173 agagaacttatagaaatgctggcaatttcaagaaaccaaaagttgttacaatctggagag 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20010000 agagaacttatagaaatgctggcaatttcaagaaaccaaaagttgttacaatctggagag 20010059
Query: 233 gagaaccaggt 243
|||||||||||
Sbjct: 20010060 gagaaccaggt 20010070
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 412 ggcaacagctgtttaccaagcaaaagagaaactcaagtcaatagaaaaagcaagaaaagg 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20014300 ggcaacagctgtttaccaagcaaaagagaaactcaagtcaatagaaaaagcaagaaaagg 20014359
Query: 472 t 472
|
Sbjct: 20014360 t 20014360
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 119 aacagcactcgcgagcggctgctttctgcgctggaagacctagaggtcttgtccag 174
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Sbjct: 19989160 aacagcactcgcgagcggctgctttctgcgctggaagacctagaggtcttgtccag 19989105
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 1 cttagagcgcagctgcgcacgcgccggctgttagtgtgtcgggaggat 48
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Sbjct: 19989278 cttagagcgcagctgcgcacgcgccggctgttagtgtgtcgggaggat 19989231
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,765,832
Number of extensions: 359
Number of successful extensions: 359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 8
Length of query: 1059
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1038
Effective length of database: 2,808,413,156
Effective search space: 2915132855928
Effective search space used: 2915132855928
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)