Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098967.1| programmed cell death 6 [Bos taurus]. 351 6e-97
Alignment gi|NP_001091461.1| peflin [Bos taurus]. 135 7e-32
Alignment gi|NP_001068818.1| sorcin [Bos taurus]. 112 8e-25
Alignment gi|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos... 90 4e-18
Alignment gi|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium bindi... 86 5e-17
Alignment gi|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding ... 86 5e-17
Alignment gi|NP_776686.1| calpain small subunit 1 [Bos taurus]. 84 3e-16
Alignment gi|NP_776685.1| calpain-3 [Bos taurus]. 80 3e-15
Alignment gi|NP_776684.1| calpain-1 catalytic subunit [Bos taurus]. 69 8e-12
Alignment gi|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos t... 69 1e-11
>ref|NP_001098967.1| programmed cell death 6 [Bos taurus].
Length = 189
Score = 351 bits (901), Expect = 6e-97
Identities = 172/189 (91%), Positives = 173/189 (91%)
Frame = +2
Query: 80 MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
MAAY PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP
Sbjct: 1 MAAYPYRPGPGAGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 60
Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGF
Sbjct: 61 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 120
Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ
Sbjct: 121 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 180
Query: 620 YLSMVFSIV 646
YLSMVFSIV
Sbjct: 181 YLSMVFSIV 189
>ref|NP_001091461.1| peflin [Bos taurus].
Length = 287
Score = 135 bits (340), Expect = 7e-32
Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I+MFD+ ++
Sbjct: 121 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVYG 178
Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
F+ +WK+I W+N+F+ YDRD SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 179 FSALWKFIQQWKNLFQQYDRDCSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 238
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
+ D FIQ C LQ LT+ FR DT G +++S+E +++M S
Sbjct: 239 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGSVRLSFEDFVTMTAS 284
>ref|NP_001068818.1| sorcin [Bos taurus].
Length = 183
Score = 112 bits (279), Expect = 8e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 30 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 90 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos taurus].
Length = 246
Score = 89.7 bits (221), Expect = 4e-18
Identities = 43/127 (33%), Positives = 75/127 (59%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T RSI+S+ D + + F EF +W I WQ V++ YDRD SG + ++L AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDQSGFLGSSQLPGAL 176
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G++L++Q + +++R++ + G + F++FI + L + F+ D D DG IQVS
Sbjct: 177 QAAGFQLNEQLYQMIVRRYAEED-GSMDFNNFISCLVRLDAMFRAFKSLDRDADGLIQVS 235
Query: 611 YEQYLSM 631
+++L +
Sbjct: 236 IQEWLQL 242
>ref|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
taurus].
Length = 363
Score = 86.3 bits (212), Expect = 5e-17
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Frame = +2
Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
+W F + + G + ELQ+ L+ +GT++PF+ T R +I+M D+
Sbjct: 223 MWKCFLAI-AGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDQN-------- 273
Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
F T D+D SG ++ +EL QA++ GYRLS Q +++++ + GR
Sbjct: 274 ---------------FITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSKNGR 318
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
I FDD++ C+ L+ LTD FRR D Q G + Y+ +L ++
Sbjct: 319 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363
>ref|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
taurus].
Length = 363
Score = 86.3 bits (212), Expect = 5e-17
Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Frame = +2
Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
+W F + + G + ELQ+ L+ +GT++PF+ T R +I+M D+
Sbjct: 223 MWKCFLAI-AGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDQN-------- 273
Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
F T D+D SG ++ +EL QA++ GYRLS Q +++++ + GR
Sbjct: 274 ---------------FITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSKNGR 318
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
I FDD++ C+ L+ LTD FRR D Q G + Y+ +L ++
Sbjct: 319 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363
>ref|NP_776686.1| calpain small subunit 1 [Bos taurus].
Length = 263
Score = 83.6 bits (205), Expect = 3e-16
Identities = 40/123 (32%), Positives = 71/123 (57%)
Frame = +2
Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
T RS++++ D + + F EF +W I WQ V++ +D D SG I +EL A G
Sbjct: 138 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAVYKQFDVDRSGTIGSSELPGAFEAAG 197
Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
+RL++ ++++IR++ +G G + FD+FI + L + F+ D D G IQV+ +++
Sbjct: 198 FRLNEHLYNMIIRRYSDEG-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 256
Query: 623 LSM 631
L +
Sbjct: 257 LQL 259
>ref|NP_776685.1| calpain-3 [Bos taurus].
Length = 822
Score = 80.1 bits (196), Expect = 3e-15
Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDRENKAGVNF 319
N+F+++ D + +D EL+ L+ F + RS+I++ D + +N
Sbjct: 657 NIFRQIAGDDMEICAD-ELKNVLNRVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNL 715
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
EF +WK I WQ +F+ YD D SG I+ E++ A+ G+ L++Q +DI+ ++ +
Sbjct: 716 QEFHHLWKKIKTWQKIFKHYDTDQSGTINSYEMRNAVKDAGFHLNNQLYDIITMRYADKY 775
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 776 M-NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 818
>ref|NP_776684.1| calpain-1 catalytic subunit [Bos taurus].
Length = 716
Score = 68.9 bits (167), Expect = 8e-12
Identities = 32/129 (24%), Positives = 71/129 (55%)
Frame = +2
Query: 245 TPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQ 424
T F+ + RS++++ DR+ + EF +W I ++ ++FR +D D SG + E++
Sbjct: 585 TGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRM 644
Query: 425 ALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQ 604
A+ G++L+ + ++++I ++ + FD+F+ + L+ + F+ DTD DG +
Sbjct: 645 AIEFAGFKLNKKLYELIITRYSEPDLA-VDFDNFVCCLVRLETMFRFFKTLDTDLDGVVT 703
Query: 605 VSYEQYLSM 631
++L +
Sbjct: 704 FDLFKWLQL 712
>ref|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos taurus].
Length = 700
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/132 (28%), Positives = 71/132 (53%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T + ++ M D + + EF +W I +Q ++R D D SG ++ E+++AL
Sbjct: 572 FSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKAL 631
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G+++ Q H +++ +F I FD+F++ I L+ L IF++ D + G IQ+
Sbjct: 632 EEAGFKMPCQLHQVIVARFADDDL-IIDFDNFVRCLIRLETLFRIFKQLDPENTGMIQLD 690
Query: 611 YEQYLSMVFSIV 646
+LS FS++
Sbjct: 691 LISWLS--FSVL 700
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,646,679
Number of extensions: 937755
Number of successful extensions: 2696
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2660
Number of HSP's successfully gapped: 26
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851917.1| PREDICTED: similar to Programmed cell death pro... 353 2e-97
Alignment gi|XP_546249.2| PREDICTED: similar to Programmed cell death pro... 260 2e-69
Alignment gi|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (... 112 9e-25
Alignment gi|XP_854701.1| PREDICTED: similar to penta-EF hand domain cont... 109 4e-24
Alignment gi|XP_850249.1| PREDICTED: similar to grancalcin [Canis familia... 107 2e-23
Alignment gi|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [... 93 6e-19
Alignment gi|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 80 5e-15
Alignment gi|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isofo... 80 5e-15
Alignment gi|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 80 5e-15
Alignment gi|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C... 80 5e-15
>ref|XP_851917.1| PREDICTED: similar to Programmed cell death protein 6 (Probable
calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
familiaris].
Length = 189
Score = 353 bits (906), Expect = 2e-97
Identities = 173/189 (91%), Positives = 174/189 (92%)
Frame = +2
Query: 80 MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
MAAYS PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP
Sbjct: 1 MAAYSYRPGPGAGPAGGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 60
Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGF
Sbjct: 61 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 120
Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ
Sbjct: 121 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 180
Query: 620 YLSMVFSIV 646
YLSMVFSIV
Sbjct: 181 YLSMVFSIV 189
>ref|XP_546249.2| PREDICTED: similar to Programmed cell death protein 6 (Probable
calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
familiaris].
Length = 150
Score = 260 bits (664), Expect = 2e-69
Identities = 128/150 (85%), Positives = 130/150 (86%)
Frame = +2
Query: 80 MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
MAAYS PDQSFLWNVFQRVDKDRSGVIS NELQQALSNGTWTPFNP
Sbjct: 1 MAAYSYLPGPGAGPAGGAALPDQSFLWNVFQRVDKDRSGVISGNELQQALSNGTWTPFNP 60
Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
VTV SIISMFDRENKAGVNFSEFTGVWKYITDWQNVF TYDRDNSGMID+NELKQALSGF
Sbjct: 61 VTVCSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFHTYDRDNSGMIDKNELKQALSGF 120
Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFI 529
GYRLSDQFHDILI KFDRQG G+IAFDDFI
Sbjct: 121 GYRLSDQFHDILIHKFDRQGWGKIAFDDFI 150
>ref|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (CP-22) (V19) [Canis
familiaris].
Length = 198
Score = 112 bits (279), Expect = 9e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 105 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 162
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 163 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
>ref|XP_854701.1| PREDICTED: similar to penta-EF hand domain containing 1 [Canis
familiaris].
Length = 278
Score = 109 bits (273), Expect = 4e-24
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 1/160 (0%)
Frame = +2
Query: 164 VFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK 343
+F V RSG +S + Q LS + +P +R I+MFD+ ++ F+ +WK
Sbjct: 119 MFLSVTSARSGKVSRKAVPQTLSCSPYAA-SPCLMR--INMFDKTKSGRIDVYGFSALWK 175
Query: 344 YITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFD 520
+I W+N+F+ YDRD SG I EL+QALS GY LS QF +L+ ++ R + D
Sbjct: 176 FIQQWKNLFQQYDRDRSGSISHTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLD 235
Query: 521 DFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 236 RFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 275
>ref|XP_850249.1| PREDICTED: similar to grancalcin [Canis familiaris].
Length = 294
Score = 107 bits (268), Expect = 2e-23
Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Frame = +2
Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
+W F V + G + ELQ+ L+ NG ++PF+ T R +I+M DR+ + F+
Sbjct: 54 MWTYFTAV-AGQDGEVDAEELQRCLTQSGINGIYSPFSLETCRIMIAMLDRDYTGKMGFN 112
Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
EF +W + W+ F D+D SG ++ +EL QA++ GYRLS Q +++++ + GR
Sbjct: 113 EFKELWAALNAWKQHFIAIDQDQSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNGR 172
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYE 616
I FDD++ C+ L+ LTD FRR D Q G + Y+
Sbjct: 173 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVNFVYD 208
>ref|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [Canis familiaris].
Length = 251
Score = 92.8 bits (229), Expect = 6e-19
Identities = 44/127 (34%), Positives = 77/127 (60%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T RSI+S+ D + + F EF +W I WQ V++ YDRD SG + ++L+ AL
Sbjct: 122 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDRSGSLGSSQLRAAL 181
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G++L++Q + ++IR+F + G + F++FI + L + +F+ D D DG +QVS
Sbjct: 182 QAAGFQLNEQLYQMIIRRFADED-GSMDFNNFISCLVRLDAMFRVFKSLDRDADGLVQVS 240
Query: 611 YEQYLSM 631
+++L +
Sbjct: 241 IQEWLQL 247
>ref|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 20 [Canis familiaris].
Length = 778
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
N+F+++ D V +D EL+ L+ + F + RS+I++ D + +N
Sbjct: 613 NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 671
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
EF +WK I WQ +F+ YD D SG I+ E++ A++ G+ L+ Q +DI+ ++
Sbjct: 672 QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 730
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 731 HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 774
>ref|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isoform 19 [Canis
familiaris].
Length = 724
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
N+F+++ D V +D EL+ L+ + F + RS+I++ D + +N
Sbjct: 559 NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 617
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
EF +WK I WQ +F+ YD D SG I+ E++ A++ G+ L+ Q +DI+ ++
Sbjct: 618 QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 676
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 677 HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 720
>ref|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 18 [Canis familiaris].
Length = 815
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
N+F+++ D V +D EL+ L+ + F + RS+I++ D + +N
Sbjct: 650 NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 708
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
EF +WK I WQ +F+ YD D SG I+ E++ A++ G+ L+ Q +DI+ ++
Sbjct: 709 QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 767
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 768 HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 811
>ref|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
(Calcium-activated neutral proteinase 3) (CANP 3)
(Muscle-specific calcium-activated neutral protease 3)
isoform 17 [Canis familiaris].
Length = 817
Score = 79.7 bits (195), Expect = 5e-15
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
N+F+++ D V +D EL+ L+ + F + RS+I++ D + +N
Sbjct: 652 NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 710
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
EF +WK I WQ +F+ YD D SG I+ E++ A++ G+ L+ Q +DI+ ++
Sbjct: 711 QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 769
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 770 HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 813
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,016,675
Number of extensions: 911954
Number of successful extensions: 2769
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 2713
Number of HSP's successfully gapped: 51
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037364.1| programmed cell death protein 6 [Homo sapiens]. 347 9e-96
Alignment gi|NP_036524.1| peflin [Homo sapiens]. 135 7e-32
Alignment gi|NP_944490.1| sorcin isoform b [Homo sapiens]. 112 9e-25
Alignment gi|NP_003121.1| sorcin isoform a [Homo sapiens]. 112 9e-25
Alignment gi|NP_036330.1| grancalcin [Homo sapiens]. 108 7e-24
Alignment gi|NP_115706.1| calpain small subunit 2 [Homo sapiens]. 91 2e-18
Alignment gi|NP_000061.1| calpain-3 isoform a [Homo sapiens]. 79 8e-15
Alignment gi|NP_077320.1| calpain-3 isoform b [Homo sapiens]. 79 8e-15
Alignment gi|NP_775111.1| calpain-3 isoform d [Homo sapiens]. 79 8e-15
Alignment gi|NP_775110.1| calpain-3 isoform c [Homo sapiens]. 79 8e-15
>ref|NP_037364.1| programmed cell death protein 6 [Homo sapiens].
Length = 191
Score = 347 bits (891), Expect = 9e-96
Identities = 167/169 (98%), Positives = 168/169 (99%)
Frame = +2
Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 319
PDQSFLWNVFQRVDKDRSGVISD ELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF
Sbjct: 23 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 82
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
SEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGFGYRLSDQFHDILIRKFDRQG
Sbjct: 83 SEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG 142
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 646
RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
Sbjct: 143 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 191
>ref|NP_036524.1| peflin [Homo sapiens].
Length = 284
Score = 135 bits (340), Expect = 7e-32
Identities = 71/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I+MFD+ ++
Sbjct: 118 EAYSW--FQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYG 175
Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
F+ +WK+I W+N+F+ YDRD SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 176 FSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 235
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 236 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 281
>ref|NP_944490.1| sorcin isoform b [Homo sapiens].
Length = 183
Score = 112 bits (279), Expect = 9e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 30 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 90 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|NP_003121.1| sorcin isoform a [Homo sapiens].
Length = 198
Score = 112 bits (279), Expect = 9e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 162
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 163 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198
>ref|NP_036330.1| grancalcin [Homo sapiens].
Length = 217
Score = 108 bits (271), Expect = 7e-24
Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G + ELQ+ L+ NGT++PF+ T R +I+M DR++ + F+ F +W +
Sbjct: 64 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNA 123
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F T D+D SG ++ +EL+QA+ GYRLS Q +++++ + GR I FDD++
Sbjct: 124 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFDDYVAC 181
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FR+ D Q G Y+ +L +I
Sbjct: 182 CVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 217
>ref|NP_115706.1| calpain small subunit 2 [Homo sapiens].
Length = 248
Score = 91.3 bits (225), Expect = 2e-18
Identities = 43/127 (33%), Positives = 78/127 (61%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T RSI+S+ D + + F EF +W I WQ V++ YDRD+SG + ++L+ AL
Sbjct: 119 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGAL 178
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G++L++Q + +++R++ + G + F++FI + L + F+ D D+DG IQVS
Sbjct: 179 QAAGFQLNEQLYQMIVRRYANED-GDMDFNNFISCLVRLDAMFRAFKSLDRDRDGLIQVS 237
Query: 611 YEQYLSM 631
+++L +
Sbjct: 238 IKEWLQL 244
>ref|NP_000061.1| calpain-3 isoform a [Homo sapiens].
Length = 821
Score = 79.0 bits (193), Expect = 8e-15
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL++ L+ F + RS+I++ D +
Sbjct: 650 EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 708
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +W I WQ +F+ YD D SG I+ E++ A++ G+ L++Q +DI+
Sbjct: 709 SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 768
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 769 RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 817
>ref|NP_077320.1| calpain-3 isoform b [Homo sapiens].
Length = 815
Score = 79.0 bits (193), Expect = 8e-15
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL++ L+ F + RS+I++ D +
Sbjct: 644 EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 702
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +W I WQ +F+ YD D SG I+ E++ A++ G+ L++Q +DI+
Sbjct: 703 SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 762
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 763 RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 811
>ref|NP_775111.1| calpain-3 isoform d [Homo sapiens].
Length = 309
Score = 79.0 bits (193), Expect = 8e-15
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL++ L+ F + RS+I++ D +
Sbjct: 138 EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 196
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +W I WQ +F+ YD D SG I+ E++ A++ G+ L++Q +DI+
Sbjct: 197 SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 256
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 257 RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 305
>ref|NP_775110.1| calpain-3 isoform c [Homo sapiens].
Length = 729
Score = 79.0 bits (193), Expect = 8e-15
Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL++ L+ F + RS+I++ D +
Sbjct: 558 EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 616
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +W I WQ +F+ YD D SG I+ E++ A++ G+ L++Q +DI+
Sbjct: 617 SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 676
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 677 RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 725
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,315,687
Number of extensions: 898842
Number of successful extensions: 2829
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2766
Number of HSP's successfully gapped: 35
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035181.1| programmed cell death protein 6 [Mus musculus]. 350 2e-96
Alignment gi|NP_080717.2| peflin [Mus musculus]. 133 3e-31
Alignment gi|NP_663498.1| grancalcin [Mus musculus]. 115 5e-26
Alignment gi|NP_079894.2| sorcin isoform 2 [Mus musculus]. 111 1e-24
Alignment gi|NP_001074443.1| sorcin isoform 1 [Mus musculus]. 111 1e-24
Alignment gi|NP_081388.1| calpain small subunit 2 [Mus musculus]. 85 1e-16
Alignment gi|NP_001103231.1| calpain-3 isoform b [Mus musculus]. 81 2e-15
Alignment gi|NP_001171270.1| calpain-3 isoform c [Mus musculus]. 81 2e-15
Alignment gi|NP_031627.2| calpain-3 isoform a [Mus musculus]. 81 2e-15
Alignment gi|NP_033925.2| calpain small subunit 1 [Mus musculus]. 77 3e-14
>ref|NP_035181.1| programmed cell death protein 6 [Mus musculus].
Length = 191
Score = 350 bits (897), Expect = 2e-96
Identities = 168/169 (99%), Positives = 169/169 (100%)
Frame = +2
Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 319
PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF
Sbjct: 23 PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 82
Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
SEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGFGYRLSDQFHDILIRKFDRQG
Sbjct: 83 SEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG 142
Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 646
RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
Sbjct: 143 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 191
>ref|NP_080717.2| peflin [Mus musculus].
Length = 275
Score = 133 bits (334), Expect = 3e-31
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I+MFD+ ++ +
Sbjct: 109 EAYSW--FQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAG 166
Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
F+ +WK++ W+N+F+ YDRD SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 167 FSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARSAI 226
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
+ D FI+ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 227 PAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 272
>ref|NP_663498.1| grancalcin [Mus musculus].
Length = 220
Score = 115 bits (289), Expect = 5e-26
Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
Frame = +2
Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKA 307
P +W F V + G + ELQ+ L+ +GT+ PF+ T R +I+M DR+
Sbjct: 52 PADDSMWTYFTAV-AGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTG 110
Query: 308 GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF 487
+ F+EF +W + W+ F T D+D SG ++ +EL QA++ GYRLS Q ++R++
Sbjct: 111 KMGFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRY 170
Query: 488 DRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
+ GR I FDD++ C+ L+ LTD FRR D Q G + YE +L +I
Sbjct: 171 SKNGR--IFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI 220
>ref|NP_079894.2| sorcin isoform 2 [Mus musculus].
Length = 183
Score = 111 bits (277), Expect = 1e-24
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 30 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 90 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSGK--ITFDDYIAC 147
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR D+ Q G + SY+ ++ V ++
Sbjct: 148 CVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 183
>ref|NP_001074443.1| sorcin isoform 1 [Mus musculus].
Length = 198
Score = 111 bits (277), Expect = 1e-24
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 105 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSGK--ITFDDYIAC 162
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR D+ Q G + SY+ ++ V ++
Sbjct: 163 CVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 198
>ref|NP_081388.1| calpain small subunit 2 [Mus musculus].
Length = 247
Score = 84.7 bits (208), Expect = 1e-16
Identities = 42/127 (33%), Positives = 75/127 (59%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T RSI+S+ D + + F EF +W I WQ VF+ YD D+SG + ++L A+
Sbjct: 118 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVFKQYDSDHSGSLGSSQLHGAM 177
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G++L++Q + +++R++ + G + F++FI + L + F+ D D+DG IQVS
Sbjct: 178 QAAGFQLNEQLYLMIVRRYADED-GGMDFNNFISCLVRLDAMFRAFKALDRDRDGLIQVS 236
Query: 611 YEQYLSM 631
++L +
Sbjct: 237 IREWLQL 243
>ref|NP_001103231.1| calpain-3 isoform b [Mus musculus].
Length = 709
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL+ L+ F + RS+I++ D +
Sbjct: 538 EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 596
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +WK I WQ +F+ YD D+SG I+ E++ A++ G+ L+ Q +DI+
Sbjct: 597 SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 656
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 657 RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 705
>ref|NP_001171270.1| calpain-3 isoform c [Mus musculus].
Length = 729
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL+ L+ F + RS+I++ D +
Sbjct: 558 EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 616
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +WK I WQ +F+ YD D+SG I+ E++ A++ G+ L+ Q +DI+
Sbjct: 617 SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 676
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 677 RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 725
>ref|NP_031627.2| calpain-3 isoform a [Mus musculus].
Length = 821
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL+ L+ F + RS+I++ D +
Sbjct: 650 EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 708
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +WK I WQ +F+ YD D+SG I+ E++ A++ G+ L+ Q +DI+
Sbjct: 709 SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 768
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 769 RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 817
>ref|NP_033925.2| calpain small subunit 1 [Mus musculus].
Length = 268
Score = 76.6 bits (187), Expect = 3e-14
Identities = 36/123 (29%), Positives = 68/123 (55%)
Frame = +2
Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
T RS++++ D + + F EF +W I WQ +++ +D D SG I +EL A G
Sbjct: 143 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAG 202
Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
+ L++ + ++IR++ + G + FD+FI + L + F+ D + G IQV+ +++
Sbjct: 203 FHLNEHLYSMIIRRYADES-GNMDFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEW 261
Query: 623 LSM 631
L +
Sbjct: 262 LQL 264
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,637,808
Number of extensions: 765920
Number of successful extensions: 2499
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 2447
Number of HSP's successfully gapped: 30
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362187.1| PREDICTED: programmed cell death protein 6-l... 253 1e-67
Alignment gi|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa]. 135 4e-32
Alignment gi|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa]. 135 4e-32
Alignment gi|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa]. 112 5e-25
Alignment gi|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa]. 112 5e-25
Alignment gi|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus... 87 1e-17
Alignment gi|NP_999336.1| calpain-3 [Sus scrofa]. 81 1e-15
Alignment gi|NP_999483.1| calpain small subunit 1 [Sus scrofa]. 81 1e-15
Alignment gi|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa]. 68 9e-12
Alignment gi|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa]. 68 9e-12
>ref|XP_003362187.1| PREDICTED: programmed cell death protein 6-like [Sus scrofa].
Length = 121
Score = 253 bits (647), Expect = 1e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Frame = +2
Query: 284 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 463
MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF
Sbjct: 1 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 60
Query: 464 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI
Sbjct: 61 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 120
Query: 644 V 646
V
Sbjct: 121 V 121
Score = 49.3 bits (116), Expect = 4e-06
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +2
Query: 161 NVFQRVDKDRSGVISDNELQQALSNGTW---TPFNPVTVRSIISMFDRENKAGVNFSEFT 331
NVF+ D+D SG+I NEL+QALS + F+ + +R FDR+ + + F +F
Sbjct: 27 NVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRK----FDRQGRGQIAFDDFI 82
Query: 332 GVWKYITDWQNVFRTYDRDNSGMI 403
+ ++FR YD D G I
Sbjct: 83 QGCIVLQRLTDIFRRYDTDQDGWI 106
>ref|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa].
Length = 198
Score = 135 bits (340), Expect = 4e-32
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 32 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 89
Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 90 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 149
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 150 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 195
>ref|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa].
Length = 289
Score = 135 bits (340), Expect = 4e-32
Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Frame = +2
Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
+++ W FQ VD D SG IS EL+QAL N W+ FN T +I++FD+ ++
Sbjct: 123 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 180
Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
F+ +WK+I W+N+F+ YDRD+SG I EL+QALS GY LS QF +L+ ++ R
Sbjct: 181 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 240
Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
+ D FIQ C LQ LT+ FR DT G I++S+E +++M S
Sbjct: 241 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 286
>ref|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa].
Length = 183
Score = 112 bits (279), Expect = 5e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 30 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 90 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183
>ref|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa].
Length = 199
Score = 112 bits (279), Expect = 5e-25
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Frame = +2
Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
+ G I +ELQ+ L+ G + PFN T R ++SM DR+ + F+EF +W +
Sbjct: 46 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 105
Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
W+ F ++D D SG +D EL++AL+ G+RLS Q + + +++ G+ I FDD+I
Sbjct: 106 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 163
Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
C+ L+ LTD FRR DT Q G + Y+ ++ V S+
Sbjct: 164 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 199
>ref|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus scrofa].
Length = 246
Score = 87.4 bits (215), Expect = 1e-17
Identities = 42/127 (33%), Positives = 74/127 (58%)
Frame = +2
Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
F+ T RSI+S+ D + + F EF +W I WQ +++ YDRD SG + ++++ AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCIYKQYDRDQSGSLGSSQVRGAL 176
Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
G++L++Q + +IR++ + G++ F+ FI + L + FR D D DG IQV
Sbjct: 177 QAAGFQLNEQLYQTIIRRYAEED-GRMDFNSFISCLVRLDAMFRAFRSLDRDADGLIQVY 235
Query: 611 YEQYLSM 631
+++L +
Sbjct: 236 IQEWLQL 242
>ref|NP_999336.1| calpain-3 [Sus scrofa].
Length = 821
Score = 81.3 bits (199), Expect = 1e-15
Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
Frame = +2
Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
+Q N+F+++ D + +D EL+ L+ F + RS+I++ D +
Sbjct: 650 EQQQFRNIFRQIAGDDMEICAD-ELKNVLNRVVNKHKDLKTEGFTLESCRSMIALMDTDG 708
Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
+N EF +WK I WQ +F+ YD D SG I+ E++ A++ G+ L++Q +DI+
Sbjct: 709 SGRLNLQEFHHLWKKIKSWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 768
Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
++ + I FD FI + L+ + F +D D DG I+++ ++L +
Sbjct: 769 RYADKYM-NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 817
>ref|NP_999483.1| calpain small subunit 1 [Sus scrofa].
Length = 266
Score = 80.9 bits (198), Expect = 1e-15
Identities = 38/123 (30%), Positives = 69/123 (56%)
Frame = +2
Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
T RS++++ D + + F EF +W I WQ +++ +D D SG I +EL A G
Sbjct: 141 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG 200
Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
+ L++ + ++IR++ +G G + FD+FI + L + F+ D D G IQV+ +++
Sbjct: 201 FHLNEHLYSMIIRRYSDEG-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 259
Query: 623 LSM 631
L +
Sbjct: 260 LQL 262
>ref|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa].
Length = 664
Score = 68.2 bits (165), Expect = 9e-12
Identities = 32/128 (25%), Positives = 66/128 (51%)
Frame = +2
Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
++ ++IIS+ D + FSEF W + W ++F +D D SG + EL+ AL
Sbjct: 538 ISCKNIISLMDTSGNGKLEFSEFKVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAA 597
Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
G++LS +++ ++ Q+ FDDF+ + L+ + +F+ T +I ++ +
Sbjct: 598 GFQLSSPLLQLIVLRY-ADPELQLGFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINE 656
Query: 620 YLSMVFSI 643
++ + +I
Sbjct: 657 FIVLTMNI 664
>ref|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa].
Length = 690
Score = 68.2 bits (165), Expect = 9e-12
Identities = 32/128 (25%), Positives = 66/128 (51%)
Frame = +2
Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
++ ++IIS+ D + FSEF W + W ++F +D D SG + EL+ AL
Sbjct: 564 ISCKNIISLMDTSGNGKLEFSEFKVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAA 623
Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
G++LS +++ ++ Q+ FDDF+ + L+ + +F+ T +I ++ +
Sbjct: 624 GFQLSSPLLQLIVLRY-ADPELQLGFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINE 682
Query: 620 YLSMVFSI 643
++ + +I
Sbjct: 683 FIVLTMNI 690
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,749,751
Number of extensions: 682461
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1713
Number of HSP's successfully gapped: 21
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002802
(1165 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 977 0.0
>gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffold749
Length = 51762
Score = 977 bits (493), Expect = 0.0
Identities = 499/501 (99%)
Strand = Plus / Minus
Query: 548 cagaggttgacagatatattccgacgctacgatacggatcaggacggctggattcaggtg 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895 cagaggttgacagatatattccgacgctacgatacggatcaggacggctggattcaggtg 8836
Query: 608 tcatatgaacagtacctttccatggtcttcagcatcgtatagtgccggtctcctgcagac 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8835 tcatatgaacagtacctttccatggtcttcagcatcgtatagtgccggtctcctgcagac 8776
Query: 668 acctttgtgacttggggaagaaaagactggaaatgccaaatctcttacctttaaccaagg 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8775 acctttgtgacttggggaagaaaagactggaaatgccaaatctcttacctttaaccaagg 8716
Query: 728 gagcacggatgcggttagacaactgtccttcctttagattttgtataattaatacctggg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8715 gagcacggatgcggttagacaactgtccttcctttagattttgtataattaatacctggg 8656
Query: 788 gacccaactgtacatatgcggagaagctggttaatgtttcacagtgctcgcagcaattag 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8655 gacccaactgtacatatgcggagaagctggttaatgtttcacagtgctcgcagcaattag 8596
Query: 848 gtcattgctcggatacacacattagacttgagactgtttaactgtgccacgagtgcggcg 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8595 gtcattgctcggatacacacattagacttgagactgtttaactgtgccacgagtgcggcg 8536
Query: 908 agatacagtaacgtatcaggtattgtgcatgcaaaaactcatcatgtgcatttctagaaa 967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8535 agatacagtaacgtatcaggtattgtgcatgcaaaaactcatcatgtgcatttctagaaa 8476
Query: 968 gctgccgttctagagtggaaatcagcagtagggatttttaataatgtggaacttgcacag 1027
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8475 gctgccgttctagagtggaaatcagcagtagggattttaaataatgtggaacttgcacag 8416
Query: 1028 gaaactgctcatgtgccttac 1048
||| |||||||||||||||||
Sbjct: 8415 gaagctgctcatgtgccttac 8395
Score = 317 bits (160), Expect = 8e-84
Identities = 160/160 (100%)
Strand = Plus / Minus
Query: 282 ccatgtttgaccgcgagaacaaggccggcgtgaatttcagcgagttcactggcgtctgga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14184 ccatgtttgaccgcgagaacaaggccggcgtgaatttcagcgagttcactggcgtctgga 14125
Query: 342 agtacatcaccgactggcagaacgtcttccgaacctacgacagggacaactcaggcatga 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14124 agtacatcaccgactggcagaacgtcttccgaacctacgacagggacaactcaggcatga 14065
Query: 402 tcgacaggaacgagctcaagcaggccctctcaggtttcgg 441
||||||||||||||||||||||||||||||||||||||||
Sbjct: 14064 tcgacaggaacgagctcaagcaggccctctcaggtttcgg 14025
Score = 220 bits (111), Expect = 1e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 440 gggtaccggctctccgaccagtttcacgacatcctcattcggaagttcgatagacaagga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11019 gggtaccggctctccgaccagtttcacgacatcctcattcggaagttcgatagacaagga 10960
Query: 500 cggggacagatcgccttcgacgacttcatccagggctgcatcgtcctgcag 550
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10959 cggggacagatcgccttcgacgacttcatccagggctgcatcgtcctgcag 10909
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 173 agggttgacaaagacaggagcggcgtgatatcggacaacgagcttcaacaagcactatcc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19538 agggttgacaaagacaggagcggcgtgatatcggacaacgagcttcaacaagcactatcc 19479
Query: 233 aacgg 237
|||||
Sbjct: 19478 aacgg 19474
Score = 91.7 bits (46), Expect = 8e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 236 ggcacctggactccattcaatccagtgaccgtccggtcgatcatat 281
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 ggcacctggactccattcaatccagtgaccgtccggtcgatcatat 15213
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,529,701
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 5
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)