Animal-Genome cDNA 20110601C-002802


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001098967.1| programmed cell death 6 [Bos taurus].             351   6e-97
Alignment   gi|NP_001091461.1| peflin [Bos taurus].                              135   7e-32
Alignment   gi|NP_001068818.1| sorcin [Bos taurus].                              112   8e-25
Alignment   gi|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos...    90   4e-18
Alignment   gi|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium bindi...    86   5e-17
Alignment   gi|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding ...    86   5e-17
Alignment   gi|NP_776686.1| calpain small subunit 1 [Bos taurus].                 84   3e-16
Alignment   gi|NP_776685.1| calpain-3 [Bos taurus].                               80   3e-15
Alignment   gi|NP_776684.1| calpain-1 catalytic subunit [Bos taurus].             69   8e-12
Alignment   gi|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos t...    69   1e-11

>ref|NP_001098967.1| programmed cell death 6 [Bos taurus].
          Length = 189

 Score =  351 bits (901), Expect = 6e-97
 Identities = 172/189 (91%), Positives = 173/189 (91%)
 Frame = +2

Query: 80  MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
           MAAY                PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP
Sbjct: 1   MAAYPYRPGPGAGPAAGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 60

Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
           VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGF
Sbjct: 61  VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 120

Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
           GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ
Sbjct: 121 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 180

Query: 620 YLSMVFSIV 646
           YLSMVFSIV
Sbjct: 181 YLSMVFSIV 189


>ref|NP_001091461.1| peflin [Bos taurus].
          Length = 287

 Score =  135 bits (340), Expect = 7e-32
 Identities = 70/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
 Frame = +2

Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
           +++ W  FQ VD D SG IS  EL+QAL N  W+ FN  T   +I+MFD+     ++   
Sbjct: 121 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVYG 178

Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
           F+ +WK+I  W+N+F+ YDRD SG I   EL+QALS  GY LS QF  +L+ ++  R   
Sbjct: 179 FSALWKFIQQWKNLFQQYDRDCSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 238

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
             +  D FIQ C  LQ LT+ FR  DT   G +++S+E +++M  S
Sbjct: 239 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGSVRLSFEDFVTMTAS 284


>ref|NP_001068818.1| sorcin [Bos taurus].
          Length = 183

 Score =  112 bits (279), Expect = 8e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 30  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 90  WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183


>ref|XP_002694832.1| PREDICTED: calpain small subunit 2-like [Bos taurus].
          Length = 246

 Score = 89.7 bits (221), Expect = 4e-18
 Identities = 43/127 (33%), Positives = 75/127 (59%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T RSI+S+ D +    + F EF  +W  I  WQ V++ YDRD SG +  ++L  AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDQSGFLGSSQLPGAL 176

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G++L++Q + +++R++  +  G + F++FI   + L  +   F+  D D DG IQVS
Sbjct: 177 QAAGFQLNEQLYQMIVRRYAEED-GSMDFNNFISCLVRLDAMFRAFKSLDRDADGLIQVS 235

Query: 611 YEQYLSM 631
            +++L +
Sbjct: 236 IQEWLQL 242


>ref|XP_002685422.1| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
           taurus].
          Length = 363

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
 Frame = +2

Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
           +W  F  +   + G +   ELQ+ L+    +GT++PF+  T R +I+M D+         
Sbjct: 223 MWKCFLAI-AGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDQN-------- 273

Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
                          F T D+D SG ++ +EL QA++  GYRLS Q    +++++ + GR
Sbjct: 274 ---------------FITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSKNGR 318

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
             I FDD++  C+ L+ LTD FRR D  Q G +   Y+ +L    ++
Sbjct: 319 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363


>ref|XP_583697.3| PREDICTED: grancalcin, EF-hand calcium binding protein [Bos
           taurus].
          Length = 363

 Score = 86.3 bits (212), Expect = 5e-17
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
 Frame = +2

Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
           +W  F  +   + G +   ELQ+ L+    +GT++PF+  T R +I+M D+         
Sbjct: 223 MWKCFLAI-AGQDGEVDAEELQKCLTQSGISGTYSPFSLETCRIMIAMLDQN-------- 273

Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
                          F T D+D SG ++ +EL QA++  GYRLS Q    +++++ + GR
Sbjct: 274 ---------------FITVDKDGSGSVEHHELNQAIAAMGYRLSPQTVTTIVKRYSKNGR 318

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
             I FDD++  C+ L+ LTD FRR D  Q G +   Y+ +L    ++
Sbjct: 319 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVSFVYDDFLQGTMAV 363


>ref|NP_776686.1| calpain small subunit 1 [Bos taurus].
          Length = 263

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 40/123 (32%), Positives = 71/123 (57%)
 Frame = +2

Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
           T RS++++ D +    + F EF  +W  I  WQ V++ +D D SG I  +EL  A    G
Sbjct: 138 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAVYKQFDVDRSGTIGSSELPGAFEAAG 197

Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
           +RL++  ++++IR++  +G G + FD+FI   + L  +   F+  D D  G IQV+ +++
Sbjct: 198 FRLNEHLYNMIIRRYSDEG-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 256

Query: 623 LSM 631
           L +
Sbjct: 257 LQL 259


>ref|NP_776685.1| calpain-3 [Bos taurus].
          Length = 822

 Score = 80.1 bits (196), Expect = 3e-15
 Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
 Frame = +2

Query: 161  NVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDRENKAGVNF 319
            N+F+++  D   + +D EL+  L+             F   + RS+I++ D +    +N 
Sbjct: 657  NIFRQIAGDDMEICAD-ELKNVLNRVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLNL 715

Query: 320  SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
             EF  +WK I  WQ +F+ YD D SG I+  E++ A+   G+ L++Q +DI+  ++  + 
Sbjct: 716  QEFHHLWKKIKTWQKIFKHYDTDQSGTINSYEMRNAVKDAGFHLNNQLYDIITMRYADKY 775

Query: 500  RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
               I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 776  M-NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 818


>ref|NP_776684.1| calpain-1 catalytic subunit [Bos taurus].
          Length = 716

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 32/129 (24%), Positives = 71/129 (55%)
 Frame = +2

Query: 245 TPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQ 424
           T F+  + RS++++ DR+    +   EF  +W  I ++ ++FR +D D SG +   E++ 
Sbjct: 585 TGFSLESCRSMVNLMDRDGNGKLGLVEFNILWNRIRNYLSIFRKFDLDKSGSMSAYEMRM 644

Query: 425 ALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQ 604
           A+   G++L+ + ++++I ++       + FD+F+   + L+ +   F+  DTD DG + 
Sbjct: 645 AIEFAGFKLNKKLYELIITRYSEPDLA-VDFDNFVCCLVRLETMFRFFKTLDTDLDGVVT 703

Query: 605 VSYEQYLSM 631
               ++L +
Sbjct: 704 FDLFKWLQL 712


>ref|NP_001096556.1| calpain-2 catalytic subunit precursor [Bos taurus].
          Length = 700

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 38/132 (28%), Positives = 71/132 (53%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T + ++ M D +    +   EF  +W  I  +Q ++R  D D SG ++  E+++AL
Sbjct: 572 FSIETCKIMVDMLDSDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKAL 631

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G+++  Q H +++ +F       I FD+F++  I L+ L  IF++ D +  G IQ+ 
Sbjct: 632 EEAGFKMPCQLHQVIVARFADDDL-IIDFDNFVRCLIRLETLFRIFKQLDPENTGMIQLD 690

Query: 611 YEQYLSMVFSIV 646
              +LS  FS++
Sbjct: 691 LISWLS--FSVL 700


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,646,679
Number of extensions: 937755
Number of successful extensions: 2696
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 2660
Number of HSP's successfully gapped: 26
Length of query: 388
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,240,222
Effective search space: 4044223048
Effective search space used: 4044223048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_851917.1| PREDICTED: similar to Programmed cell death pro...   353   2e-97
Alignment   gi|XP_546249.2| PREDICTED: similar to Programmed cell death pro...   260   2e-69
Alignment   gi|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (...   112   9e-25
Alignment   gi|XP_854701.1| PREDICTED: similar to penta-EF hand domain cont...   109   4e-24
Alignment   gi|XP_850249.1| PREDICTED: similar to grancalcin [Canis familia...   107   2e-23
Alignment   gi|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [...    93   6e-19
Alignment   gi|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C...    80   5e-15
Alignment   gi|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isofo...    80   5e-15
Alignment   gi|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C...    80   5e-15
Alignment   gi|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (C...    80   5e-15

>ref|XP_851917.1| PREDICTED: similar to Programmed cell death protein 6 (Probable
           calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
           familiaris].
          Length = 189

 Score =  353 bits (906), Expect = 2e-97
 Identities = 173/189 (91%), Positives = 174/189 (92%)
 Frame = +2

Query: 80  MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
           MAAYS               PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP
Sbjct: 1   MAAYSYRPGPGAGPAGGAALPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 60

Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
           VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGF
Sbjct: 61  VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGF 120

Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
           GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ
Sbjct: 121 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 180

Query: 620 YLSMVFSIV 646
           YLSMVFSIV
Sbjct: 181 YLSMVFSIV 189


>ref|XP_546249.2| PREDICTED: similar to Programmed cell death protein 6 (Probable
           calcium-binding protein ALG-2) (PMP41) (ALG-257) [Canis
           familiaris].
          Length = 150

 Score =  260 bits (664), Expect = 2e-69
 Identities = 128/150 (85%), Positives = 130/150 (86%)
 Frame = +2

Query: 80  MAAYSXXXXXXXXXXXXXXXPDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNP 259
           MAAYS               PDQSFLWNVFQRVDKDRSGVIS NELQQALSNGTWTPFNP
Sbjct: 1   MAAYSYLPGPGAGPAGGAALPDQSFLWNVFQRVDKDRSGVISGNELQQALSNGTWTPFNP 60

Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
           VTV SIISMFDRENKAGVNFSEFTGVWKYITDWQNVF TYDRDNSGMID+NELKQALSGF
Sbjct: 61  VTVCSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFHTYDRDNSGMIDKNELKQALSGF 120

Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFI 529
           GYRLSDQFHDILI KFDRQG G+IAFDDFI
Sbjct: 121 GYRLSDQFHDILIHKFDRQGWGKIAFDDFI 150


>ref|XP_532452.1| PREDICTED: similar to Sorcin (22 kDa protein) (CP-22) (V19) [Canis
           familiaris].
          Length = 198

 Score =  112 bits (279), Expect = 9e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 45  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 105 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 162

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 163 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198


>ref|XP_854701.1| PREDICTED: similar to penta-EF hand domain containing 1 [Canis
           familiaris].
          Length = 278

 Score =  109 bits (273), Expect = 4e-24
 Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 1/160 (0%)
 Frame = +2

Query: 164 VFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWK 343
           +F  V   RSG +S   + Q LS   +   +P  +R  I+MFD+     ++   F+ +WK
Sbjct: 119 MFLSVTSARSGKVSRKAVPQTLSCSPYAA-SPCLMR--INMFDKTKSGRIDVYGFSALWK 175

Query: 344 YITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGRGQIAFD 520
           +I  W+N+F+ YDRD SG I   EL+QALS  GY LS QF  +L+ ++  R     +  D
Sbjct: 176 FIQQWKNLFQQYDRDRSGSISHTELQQALSQMGYNLSPQFTQLLVSRYCPRSANPAMQLD 235

Query: 521 DFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
            FIQ C  LQ LT+ FR  DT   G I++S+E +++M  S
Sbjct: 236 RFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 275


>ref|XP_850249.1| PREDICTED: similar to grancalcin [Canis familiaris].
          Length = 294

 Score =  107 bits (268), Expect = 2e-23
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
 Frame = +2

Query: 155 LWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFS 322
           +W  F  V   + G +   ELQ+ L+    NG ++PF+  T R +I+M DR+    + F+
Sbjct: 54  MWTYFTAV-AGQDGEVDAEELQRCLTQSGINGIYSPFSLETCRIMIAMLDRDYTGKMGFN 112

Query: 323 EFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGR 502
           EF  +W  +  W+  F   D+D SG ++ +EL QA++  GYRLS Q    +++++ + GR
Sbjct: 113 EFKELWAALNAWKQHFIAIDQDQSGTVEHHELNQAIAAMGYRLSPQTLTAIVKRYSKNGR 172

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYE 616
             I FDD++  C+ L+ LTD FRR D  Q G +   Y+
Sbjct: 173 --IFFDDYVACCVKLRALTDFFRRRDHLQQGVVNFVYD 208


>ref|XP_544399.2| PREDICTED: similar to calpain small subunit 2 [Canis familiaris].
          Length = 251

 Score = 92.8 bits (229), Expect = 6e-19
 Identities = 44/127 (34%), Positives = 77/127 (60%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T RSI+S+ D +    + F EF  +W  I  WQ V++ YDRD SG +  ++L+ AL
Sbjct: 122 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDRSGSLGSSQLRAAL 181

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G++L++Q + ++IR+F  +  G + F++FI   + L  +  +F+  D D DG +QVS
Sbjct: 182 QAAGFQLNEQLYQMIIRRFADED-GSMDFNNFISCLVRLDAMFRVFKSLDRDADGLVQVS 240

Query: 611 YEQYLSM 631
            +++L +
Sbjct: 241 IQEWLQL 247


>ref|XP_859431.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
            (Calcium-activated neutral proteinase 3) (CANP 3)
            (Muscle-specific calcium-activated neutral protease 3)
            isoform 20 [Canis familiaris].
          Length = 778

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
 Frame = +2

Query: 161  NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
            N+F+++  D   V +D EL+  L+       +     F   + RS+I++ D +    +N 
Sbjct: 613  NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 671

Query: 320  SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
             EF  +WK I  WQ +F+ YD D SG I+  E++ A++  G+ L+ Q +DI+  ++    
Sbjct: 672  QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 730

Query: 500  RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
               I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 731  HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 774


>ref|XP_859394.1| PREDICTED: similar to calpain 3 isoform c isoform 19 [Canis
            familiaris].
          Length = 724

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
 Frame = +2

Query: 161  NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
            N+F+++  D   V +D EL+  L+       +     F   + RS+I++ D +    +N 
Sbjct: 559  NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 617

Query: 320  SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
             EF  +WK I  WQ +F+ YD D SG I+  E++ A++  G+ L+ Q +DI+  ++    
Sbjct: 618  QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 676

Query: 500  RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
               I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 677  HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 720


>ref|XP_859356.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
            (Calcium-activated neutral proteinase 3) (CANP 3)
            (Muscle-specific calcium-activated neutral protease 3)
            isoform 18 [Canis familiaris].
          Length = 815

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
 Frame = +2

Query: 161  NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
            N+F+++  D   V +D EL+  L+       +     F   + RS+I++ D +    +N 
Sbjct: 650  NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 708

Query: 320  SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
             EF  +WK I  WQ +F+ YD D SG I+  E++ A++  G+ L+ Q +DI+  ++    
Sbjct: 709  QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 767

Query: 500  RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
               I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 768  HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 811


>ref|XP_859325.1| PREDICTED: similar to Calpain-3 (Calpain L3) (Calpain p94)
            (Calcium-activated neutral proteinase 3) (CANP 3)
            (Muscle-specific calcium-activated neutral protease 3)
            isoform 17 [Canis familiaris].
          Length = 817

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 7/164 (4%)
 Frame = +2

Query: 161  NVFQRVDKDRSGVISDNELQQALS-------NGTWTPFNPVTVRSIISMFDRENKAGVNF 319
            N+F+++  D   V +D EL+  L+       +     F   + RS+I++ D +    +N 
Sbjct: 652  NIFRQIAGDDMEVCAD-ELKNILNMVVNKNKDLKTQGFTLESCRSMIALLDTDGSGRLNL 710

Query: 320  SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
             EF  +WK I  WQ +F+ YD D SG I+  E++ A++  G+ L+ Q +DI+  ++    
Sbjct: 711  QEFHHLWKKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNSQLYDIITMRY-ADK 769

Query: 500  RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
               I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 770  HMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 813


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,016,675
Number of extensions: 911954
Number of successful extensions: 2769
Number of sequences better than 1.0e-05: 51
Number of HSP's gapped: 2713
Number of HSP's successfully gapped: 51
Length of query: 388
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 283
Effective length of database: 15,374,224
Effective search space: 4350905392
Effective search space used: 4350905392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_037364.1| programmed cell death protein 6 [Homo sapiens].      347   9e-96
Alignment   gi|NP_036524.1| peflin [Homo sapiens].                               135   7e-32
Alignment   gi|NP_944490.1| sorcin isoform b [Homo sapiens].                     112   9e-25
Alignment   gi|NP_003121.1| sorcin isoform a [Homo sapiens].                     112   9e-25
Alignment   gi|NP_036330.1| grancalcin [Homo sapiens].                           108   7e-24
Alignment   gi|NP_115706.1| calpain small subunit 2 [Homo sapiens].               91   2e-18
Alignment   gi|NP_000061.1| calpain-3 isoform a [Homo sapiens].                   79   8e-15
Alignment   gi|NP_077320.1| calpain-3 isoform b [Homo sapiens].                   79   8e-15
Alignment   gi|NP_775111.1| calpain-3 isoform d [Homo sapiens].                   79   8e-15
Alignment   gi|NP_775110.1| calpain-3 isoform c [Homo sapiens].                   79   8e-15

>ref|NP_037364.1| programmed cell death protein 6 [Homo sapiens].
          Length = 191

 Score =  347 bits (891), Expect = 9e-96
 Identities = 167/169 (98%), Positives = 168/169 (99%)
 Frame = +2

Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 319
           PDQSFLWNVFQRVDKDRSGVISD ELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF
Sbjct: 23  PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 82

Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
           SEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGFGYRLSDQFHDILIRKFDRQG
Sbjct: 83  SEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG 142

Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 646
           RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
Sbjct: 143 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 191


>ref|NP_036524.1| peflin [Homo sapiens].
          Length = 284

 Score =  135 bits (340), Expect = 7e-32
 Identities = 71/166 (42%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
 Frame = +2

Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
           +++ W  FQ VD D SG IS  EL+QAL N  W+ FN  T   +I+MFD+     ++   
Sbjct: 118 EAYSW--FQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYG 175

Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
           F+ +WK+I  W+N+F+ YDRD SG I   EL+QALS  GY LS QF  +L+ ++  R   
Sbjct: 176 FSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 235

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
             +  D FIQ C  LQ LT+ FR  DT   G I++S+E +++M  S
Sbjct: 236 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 281


>ref|NP_944490.1| sorcin isoform b [Homo sapiens].
          Length = 183

 Score =  112 bits (279), Expect = 9e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 30  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 90  WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183


>ref|NP_003121.1| sorcin isoform a [Homo sapiens].
          Length = 198

 Score =  112 bits (279), Expect = 9e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 45  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 162

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 163 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 198


>ref|NP_036330.1| grancalcin [Homo sapiens].
          Length = 217

 Score =  108 bits (271), Expect = 7e-24
 Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G +   ELQ+ L+    NGT++PF+  T R +I+M DR++   + F+ F  +W  +  
Sbjct: 64  QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKELWAALNA 123

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F T D+D SG ++ +EL+QA+   GYRLS Q    +++++ + GR  I FDD++  
Sbjct: 124 WKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGR--IFFDDYVAC 181

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FR+ D  Q G     Y+ +L    +I
Sbjct: 182 CVKLRALTDFFRKRDHLQQGSANFIYDDFLQGTMAI 217


>ref|NP_115706.1| calpain small subunit 2 [Homo sapiens].
          Length = 248

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 43/127 (33%), Positives = 78/127 (61%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T RSI+S+ D +    + F EF  +W  I  WQ V++ YDRD+SG +  ++L+ AL
Sbjct: 119 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVYKQYDRDHSGSLGSSQLRGAL 178

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G++L++Q + +++R++  +  G + F++FI   + L  +   F+  D D+DG IQVS
Sbjct: 179 QAAGFQLNEQLYQMIVRRYANED-GDMDFNNFISCLVRLDAMFRAFKSLDRDRDGLIQVS 237

Query: 611 YEQYLSM 631
            +++L +
Sbjct: 238 IKEWLQL 244


>ref|NP_000061.1| calpain-3 isoform a [Homo sapiens].
          Length = 821

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL++ L+             F   + RS+I++ D + 
Sbjct: 650  EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 708

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +W  I  WQ +F+ YD D SG I+  E++ A++  G+ L++Q +DI+  
Sbjct: 709  SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 768

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 769  RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 817


>ref|NP_077320.1| calpain-3 isoform b [Homo sapiens].
          Length = 815

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL++ L+             F   + RS+I++ D + 
Sbjct: 644  EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 702

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +W  I  WQ +F+ YD D SG I+  E++ A++  G+ L++Q +DI+  
Sbjct: 703  SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 762

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 763  RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 811


>ref|NP_775111.1| calpain-3 isoform d [Homo sapiens].
          Length = 309

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143 DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
           +Q    N+F+++  D   + +D EL++ L+             F   + RS+I++ D + 
Sbjct: 138 EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 196

Query: 302 KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
              +N  EF  +W  I  WQ +F+ YD D SG I+  E++ A++  G+ L++Q +DI+  
Sbjct: 197 SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 256

Query: 482 KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
           ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 257 RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 305


>ref|NP_775110.1| calpain-3 isoform c [Homo sapiens].
          Length = 729

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 47/170 (27%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL++ L+             F   + RS+I++ D + 
Sbjct: 558  EQQQFRNIFKQIAGDDMEICAD-ELKKVLNTVVNKHKDLKTHGFTLESCRSMIALMDTDG 616

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +W  I  WQ +F+ YD D SG I+  E++ A++  G+ L++Q +DI+  
Sbjct: 617  SGKLNLQEFHHLWNKIKAWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 676

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 677  RY-ADKHMNIDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 725


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,315,687
Number of extensions: 898842
Number of successful extensions: 2829
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 2766
Number of HSP's successfully gapped: 35
Length of query: 388
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 284
Effective length of database: 14,868,908
Effective search space: 4222769872
Effective search space used: 4222769872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035181.1| programmed cell death protein 6 [Mus musculus].      350   2e-96
Alignment   gi|NP_080717.2| peflin [Mus musculus].                               133   3e-31
Alignment   gi|NP_663498.1| grancalcin [Mus musculus].                           115   5e-26
Alignment   gi|NP_079894.2| sorcin isoform 2 [Mus musculus].                     111   1e-24
Alignment   gi|NP_001074443.1| sorcin isoform 1 [Mus musculus].                  111   1e-24
Alignment   gi|NP_081388.1| calpain small subunit 2 [Mus musculus].               85   1e-16
Alignment   gi|NP_001103231.1| calpain-3 isoform b [Mus musculus].                81   2e-15
Alignment   gi|NP_001171270.1| calpain-3 isoform c [Mus musculus].                81   2e-15
Alignment   gi|NP_031627.2| calpain-3 isoform a [Mus musculus].                   81   2e-15
Alignment   gi|NP_033925.2| calpain small subunit 1 [Mus musculus].               77   3e-14

>ref|NP_035181.1| programmed cell death protein 6 [Mus musculus].
          Length = 191

 Score =  350 bits (897), Expect = 2e-96
 Identities = 168/169 (99%), Positives = 169/169 (100%)
 Frame = +2

Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 319
           PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF
Sbjct: 23  PDQSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 82

Query: 320 SEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQG 499
           SEFTGVWKYITDWQNVFRTYDRDNSGMID+NELKQALSGFGYRLSDQFHDILIRKFDRQG
Sbjct: 83  SEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG 142

Query: 500 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 646
           RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV
Sbjct: 143 RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSIV 191


>ref|NP_080717.2| peflin [Mus musculus].
          Length = 275

 Score =  133 bits (334), Expect = 3e-31
 Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
 Frame = +2

Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
           +++ W  FQ VD D SG IS  EL+QAL N  W+ FN  T   +I+MFD+     ++ + 
Sbjct: 109 EAYSW--FQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAG 166

Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
           F+ +WK++  W+N+F+ YDRD SG I   EL+QALS  GY LS QF  +L+ ++  R   
Sbjct: 167 FSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARSAI 226

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
             +  D FI+ C  LQ LT+ FR  DT   G I++S+E +++M  S
Sbjct: 227 PAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 272


>ref|NP_663498.1| grancalcin [Mus musculus].
          Length = 220

 Score =  115 bits (289), Expect = 5e-26
 Identities = 62/172 (36%), Positives = 96/172 (55%), Gaps = 4/172 (2%)
 Frame = +2

Query: 140 PDQSFLWNVFQRVDKDRSGVISDNELQQALS----NGTWTPFNPVTVRSIISMFDRENKA 307
           P    +W  F  V   + G +   ELQ+ L+    +GT+ PF+  T R +I+M DR+   
Sbjct: 52  PADDSMWTYFTAV-AGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTG 110

Query: 308 GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF 487
            + F+EF  +W  +  W+  F T D+D SG ++ +EL QA++  GYRLS Q    ++R++
Sbjct: 111 KMGFNEFKELWAALNAWKQNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRY 170

Query: 488 DRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
            + GR  I FDD++  C+ L+ LTD FRR D  Q G +   YE +L    +I
Sbjct: 171 SKNGR--IFFDDYVACCVKLRALTDFFRRRDHLQQGIVNFMYEDFLQGTMTI 220


>ref|NP_079894.2| sorcin isoform 2 [Mus musculus].
          Length = 183

 Score =  111 bits (277), Expect = 1e-24
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 30  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 90  WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSGK--ITFDDYIAC 147

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR D+ Q G +  SY+ ++  V ++
Sbjct: 148 CVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 183


>ref|NP_001074443.1| sorcin isoform 1 [Mus musculus].
          Length = 198

 Score =  111 bits (277), Expect = 1e-24
 Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 45  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 105 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQTVNSVAKRYSTSGK--ITFDDYIAC 162

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR D+ Q G +  SY+ ++  V ++
Sbjct: 163 CVKLRALTDSFRRRDSGQQGVVNFSYDDFIQCVMTV 198


>ref|NP_081388.1| calpain small subunit 2 [Mus musculus].
          Length = 247

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 42/127 (33%), Positives = 75/127 (59%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T RSI+S+ D +    + F EF  +W  I  WQ VF+ YD D+SG +  ++L  A+
Sbjct: 118 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCVFKQYDSDHSGSLGSSQLHGAM 177

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G++L++Q + +++R++  +  G + F++FI   + L  +   F+  D D+DG IQVS
Sbjct: 178 QAAGFQLNEQLYLMIVRRYADED-GGMDFNNFISCLVRLDAMFRAFKALDRDRDGLIQVS 236

Query: 611 YEQYLSM 631
             ++L +
Sbjct: 237 IREWLQL 243


>ref|NP_001103231.1| calpain-3 isoform b [Mus musculus].
          Length = 709

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL+  L+             F   + RS+I++ D + 
Sbjct: 538  EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 596

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +WK I  WQ +F+ YD D+SG I+  E++ A++  G+ L+ Q +DI+  
Sbjct: 597  SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 656

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 657  RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 705


>ref|NP_001171270.1| calpain-3 isoform c [Mus musculus].
          Length = 729

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL+  L+             F   + RS+I++ D + 
Sbjct: 558  EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 616

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +WK I  WQ +F+ YD D+SG I+  E++ A++  G+ L+ Q +DI+  
Sbjct: 617  SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 676

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 677  RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 725


>ref|NP_031627.2| calpain-3 isoform a [Mus musculus].
          Length = 821

 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 48/170 (28%), Positives = 88/170 (51%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL+  L+             F   + RS+I++ D + 
Sbjct: 650  EQQQFRNIFRQIAGDDMEICAD-ELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDG 708

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +WK I  WQ +F+ YD D+SG I+  E++ A++  G+ L+ Q +DI+  
Sbjct: 709  SGRLNLQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITM 768

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++       I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 769  RY-ADKHMNIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 817


>ref|NP_033925.2| calpain small subunit 1 [Mus musculus].
          Length = 268

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 36/123 (29%), Positives = 68/123 (55%)
 Frame = +2

Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
           T RS++++ D +    + F EF  +W  I  WQ +++ +D D SG I  +EL  A    G
Sbjct: 143 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKRFDTDRSGTIGSHELPGAFEAAG 202

Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
           + L++  + ++IR++  +  G + FD+FI   + L  +   F+  D +  G IQV+ +++
Sbjct: 203 FHLNEHLYSMIIRRYADES-GNMDFDNFISCLVRLDAMFRAFKSLDKNGTGQIQVNIQEW 261

Query: 623 LSM 631
           L +
Sbjct: 262 LQL 264


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,637,808
Number of extensions: 765920
Number of successful extensions: 2499
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 2447
Number of HSP's successfully gapped: 30
Length of query: 388
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 285
Effective length of database: 12,523,851
Effective search space: 3569297535
Effective search space used: 3569297535
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003362187.1| PREDICTED: programmed cell death protein 6-l...   253   1e-67
Alignment   gi|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa].    135   4e-32
Alignment   gi|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa].    135   4e-32
Alignment   gi|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa].    112   5e-25
Alignment   gi|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa].    112   5e-25
Alignment   gi|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus...    87   1e-17
Alignment   gi|NP_999336.1| calpain-3 [Sus scrofa].                               81   1e-15
Alignment   gi|NP_999483.1| calpain small subunit 1 [Sus scrofa].                 81   1e-15
Alignment   gi|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa].       68   9e-12
Alignment   gi|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa].       68   9e-12

>ref|XP_003362187.1| PREDICTED: programmed cell death protein 6-like [Sus scrofa].
          Length = 121

 Score =  253 bits (647), Expect = 1e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)
 Frame = +2

Query: 284 MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 463
           MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF
Sbjct: 1   MFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQF 60

Query: 464 HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI
Sbjct: 61  HDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 120

Query: 644 V 646
           V
Sbjct: 121 V 121



 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +2

Query: 161 NVFQRVDKDRSGVISDNELQQALSNGTW---TPFNPVTVRSIISMFDRENKAGVNFSEFT 331
           NVF+  D+D SG+I  NEL+QALS   +     F+ + +R     FDR+ +  + F +F 
Sbjct: 27  NVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRK----FDRQGRGQIAFDDFI 82

Query: 332 GVWKYITDWQNVFRTYDRDNSGMI 403
                +    ++FR YD D  G I
Sbjct: 83  QGCIVLQRLTDIFRRYDTDQDGWI 106


>ref|XP_003356316.1| PREDICTED: peflin-like isoform 2 [Sus scrofa].
          Length = 198

 Score =  135 bits (340), Expect = 4e-32
 Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
 Frame = +2

Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
           +++ W  FQ VD D SG IS  EL+QAL N  W+ FN  T   +I++FD+     ++   
Sbjct: 32  EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 89

Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
           F+ +WK+I  W+N+F+ YDRD+SG I   EL+QALS  GY LS QF  +L+ ++  R   
Sbjct: 90  FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 149

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
             +  D FIQ C  LQ LT+ FR  DT   G I++S+E +++M  S
Sbjct: 150 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 195


>ref|XP_003127816.2| PREDICTED: peflin-like isoform 1 [Sus scrofa].
          Length = 289

 Score =  135 bits (340), Expect = 4e-32
 Identities = 70/166 (42%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
 Frame = +2

Query: 146 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSE 325
           +++ W  FQ VD D SG IS  EL+QAL N  W+ FN  T   +I++FD+     ++   
Sbjct: 123 EAYSW--FQSVDSDHSGYISIKELKQALVNSNWSSFNDETCLMMINLFDKTKTGRIDVYG 180

Query: 326 FTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKF-DRQGR 502
           F+ +WK+I  W+N+F+ YDRD+SG I   EL+QALS  GY LS QF  +L+ ++  R   
Sbjct: 181 FSALWKFIQQWKNLFQQYDRDHSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSAN 240

Query: 503 GQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFS 640
             +  D FIQ C  LQ LT+ FR  DT   G I++S+E +++M  S
Sbjct: 241 PAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFVTMTAS 286


>ref|XP_003130171.1| PREDICTED: sorcin-like isoform 2 [Sus scrofa].
          Length = 183

 Score =  112 bits (279), Expect = 5e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 30  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 89

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 90  WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 147

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 148 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 183


>ref|XP_003130170.1| PREDICTED: sorcin-like isoform 1 [Sus scrofa].
          Length = 199

 Score =  112 bits (279), Expect = 5e-25
 Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
 Frame = +2

Query: 188 RSGVISDNELQQALSN----GTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITD 355
           + G I  +ELQ+ L+     G + PFN  T R ++SM DR+    + F+EF  +W  +  
Sbjct: 46  QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 105

Query: 356 WQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQG 535
           W+  F ++D D SG +D  EL++AL+  G+RLS Q  + + +++   G+  I FDD+I  
Sbjct: 106 WRQHFISFDSDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGK--ITFDDYIAC 163

Query: 536 CIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMVFSI 643
           C+ L+ LTD FRR DT Q G +   Y+ ++  V S+
Sbjct: 164 CVKLRALTDSFRRRDTAQQGVVNFPYDDFIQCVMSV 199


>ref|XP_003127026.1| PREDICTED: calpain small subunit 2-like [Sus scrofa].
          Length = 246

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 42/127 (33%), Positives = 74/127 (58%)
 Frame = +2

Query: 251 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQAL 430
           F+  T RSI+S+ D +    + F EF  +W  I  WQ +++ YDRD SG +  ++++ AL
Sbjct: 117 FSLDTCRSIVSVMDSDTTGKLGFEEFKYLWNNIKKWQCIYKQYDRDQSGSLGSSQVRGAL 176

Query: 431 SGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVS 610
              G++L++Q +  +IR++  +  G++ F+ FI   + L  +   FR  D D DG IQV 
Sbjct: 177 QAAGFQLNEQLYQTIIRRYAEED-GRMDFNSFISCLVRLDAMFRAFRSLDRDADGLIQVY 235

Query: 611 YEQYLSM 631
            +++L +
Sbjct: 236 IQEWLQL 242


>ref|NP_999336.1| calpain-3 [Sus scrofa].
          Length = 821

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 7/170 (4%)
 Frame = +2

Query: 143  DQSFLWNVFQRVDKDRSGVISDNELQQALSNGT-------WTPFNPVTVRSIISMFDREN 301
            +Q    N+F+++  D   + +D EL+  L+             F   + RS+I++ D + 
Sbjct: 650  EQQQFRNIFRQIAGDDMEICAD-ELKNVLNRVVNKHKDLKTEGFTLESCRSMIALMDTDG 708

Query: 302  KAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFGYRLSDQFHDILIR 481
               +N  EF  +WK I  WQ +F+ YD D SG I+  E++ A++  G+ L++Q +DI+  
Sbjct: 709  SGRLNLQEFHHLWKKIKSWQKIFKHYDTDQSGTINSYEMRNAVNDAGFHLNNQLYDIITM 768

Query: 482  KFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 631
            ++  +    I FD FI   + L+ +   F  +D D DG I+++  ++L +
Sbjct: 769  RYADKYM-NIDFDSFICCFVRLEGMFRAFNAFDKDGDGIIKLNVLEWLQL 817


>ref|NP_999483.1| calpain small subunit 1 [Sus scrofa].
          Length = 266

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 38/123 (30%), Positives = 69/123 (56%)
 Frame = +2

Query: 263 TVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGFG 442
           T RS++++ D +    + F EF  +W  I  WQ +++ +D D SG I  +EL  A    G
Sbjct: 141 TCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG 200

Query: 443 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQY 622
           + L++  + ++IR++  +G G + FD+FI   + L  +   F+  D D  G IQV+ +++
Sbjct: 201 FHLNEHLYSMIIRRYSDEG-GNMDFDNFISCLVRLDAMFRAFKSLDKDGTGQIQVNIQEW 259

Query: 623 LSM 631
           L +
Sbjct: 260 LQL 262


>ref|XP_001927273.1| PREDICTED: calpain-9 isoform 2 [Sus scrofa].
          Length = 664

 Score = 68.2 bits (165), Expect = 9e-12
 Identities = 32/128 (25%), Positives = 66/128 (51%)
 Frame = +2

Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
           ++ ++IIS+ D      + FSEF   W  +  W ++F  +D D SG +   EL+ AL   
Sbjct: 538 ISCKNIISLMDTSGNGKLEFSEFKVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAA 597

Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
           G++LS     +++ ++      Q+ FDDF+   + L+  + +F+   T    +I ++  +
Sbjct: 598 GFQLSSPLLQLIVLRY-ADPELQLGFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINE 656

Query: 620 YLSMVFSI 643
           ++ +  +I
Sbjct: 657 FIVLTMNI 664


>ref|XP_001927250.1| PREDICTED: calpain-9 isoform 1 [Sus scrofa].
          Length = 690

 Score = 68.2 bits (165), Expect = 9e-12
 Identities = 32/128 (25%), Positives = 66/128 (51%)
 Frame = +2

Query: 260 VTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDRNELKQALSGF 439
           ++ ++IIS+ D      + FSEF   W  +  W ++F  +D D SG +   EL+ AL   
Sbjct: 564 ISCKNIISLMDTSGNGKLEFSEFKVFWDKLKKWMSLFLQFDADKSGTMSSYELRSALKAA 623

Query: 440 GYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQ 619
           G++LS     +++ ++      Q+ FDDF+   + L+  + +F+   T    +I ++  +
Sbjct: 624 GFQLSSPLLQLIVLRY-ADPELQLGFDDFLNCLVRLENASRMFQALSTKNKEFIHLNINE 682

Query: 620 YLSMVFSI 643
           ++ +  +I
Sbjct: 683 FIVLTMNI 690


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,749,751
Number of extensions: 682461
Number of successful extensions: 1749
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 1713
Number of HSP's successfully gapped: 21
Length of query: 388
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 287
Effective length of database: 8,829,335
Effective search space: 2534019145
Effective search space used: 2534019145
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002802
         (1165 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...   977   0.0  

>gb|GL896405.1| Sus scrofa unplaced genomic scaffold chrU_scaffold749
          Length = 51762

 Score =  977 bits (493), Expect = 0.0
 Identities = 499/501 (99%)
 Strand = Plus / Minus

                                                                        
Query: 548  cagaggttgacagatatattccgacgctacgatacggatcaggacggctggattcaggtg 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8895 cagaggttgacagatatattccgacgctacgatacggatcaggacggctggattcaggtg 8836

                                                                        
Query: 608  tcatatgaacagtacctttccatggtcttcagcatcgtatagtgccggtctcctgcagac 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8835 tcatatgaacagtacctttccatggtcttcagcatcgtatagtgccggtctcctgcagac 8776

                                                                        
Query: 668  acctttgtgacttggggaagaaaagactggaaatgccaaatctcttacctttaaccaagg 727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8775 acctttgtgacttggggaagaaaagactggaaatgccaaatctcttacctttaaccaagg 8716

                                                                        
Query: 728  gagcacggatgcggttagacaactgtccttcctttagattttgtataattaatacctggg 787
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8715 gagcacggatgcggttagacaactgtccttcctttagattttgtataattaatacctggg 8656

                                                                        
Query: 788  gacccaactgtacatatgcggagaagctggttaatgtttcacagtgctcgcagcaattag 847
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8655 gacccaactgtacatatgcggagaagctggttaatgtttcacagtgctcgcagcaattag 8596

                                                                        
Query: 848  gtcattgctcggatacacacattagacttgagactgtttaactgtgccacgagtgcggcg 907
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8595 gtcattgctcggatacacacattagacttgagactgtttaactgtgccacgagtgcggcg 8536

                                                                        
Query: 908  agatacagtaacgtatcaggtattgtgcatgcaaaaactcatcatgtgcatttctagaaa 967
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8535 agatacagtaacgtatcaggtattgtgcatgcaaaaactcatcatgtgcatttctagaaa 8476

                                                                        
Query: 968  gctgccgttctagagtggaaatcagcagtagggatttttaataatgtggaacttgcacag 1027
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8475 gctgccgttctagagtggaaatcagcagtagggattttaaataatgtggaacttgcacag 8416

                                 
Query: 1028 gaaactgctcatgtgccttac 1048
            ||| |||||||||||||||||
Sbjct: 8415 gaagctgctcatgtgccttac 8395



 Score =  317 bits (160), Expect = 8e-84
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                         
Query: 282   ccatgtttgaccgcgagaacaaggccggcgtgaatttcagcgagttcactggcgtctgga 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14184 ccatgtttgaccgcgagaacaaggccggcgtgaatttcagcgagttcactggcgtctgga 14125

                                                                         
Query: 342   agtacatcaccgactggcagaacgtcttccgaacctacgacagggacaactcaggcatga 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14124 agtacatcaccgactggcagaacgtcttccgaacctacgacagggacaactcaggcatga 14065

                                                     
Query: 402   tcgacaggaacgagctcaagcaggccctctcaggtttcgg 441
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 14064 tcgacaggaacgagctcaagcaggccctctcaggtttcgg 14025



 Score =  220 bits (111), Expect = 1e-54
 Identities = 111/111 (100%)
 Strand = Plus / Minus

                                                                         
Query: 440   gggtaccggctctccgaccagtttcacgacatcctcattcggaagttcgatagacaagga 499
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11019 gggtaccggctctccgaccagtttcacgacatcctcattcggaagttcgatagacaagga 10960

                                                                
Query: 500   cggggacagatcgccttcgacgacttcatccagggctgcatcgtcctgcag 550
             |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10959 cggggacagatcgccttcgacgacttcatccagggctgcatcgtcctgcag 10909



 Score =  129 bits (65), Expect = 4e-27
 Identities = 65/65 (100%)
 Strand = Plus / Minus

                                                                         
Query: 173   agggttgacaaagacaggagcggcgtgatatcggacaacgagcttcaacaagcactatcc 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19538 agggttgacaaagacaggagcggcgtgatatcggacaacgagcttcaacaagcactatcc 19479

                  
Query: 233   aacgg 237
             |||||
Sbjct: 19478 aacgg 19474



 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                           
Query: 236   ggcacctggactccattcaatccagtgaccgtccggtcgatcatat 281
             ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15258 ggcacctggactccattcaatccagtgaccgtccggtcgatcatat 15213


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,529,701
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 5
Length of query: 1165
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1144
Effective length of database: 2,808,413,156
Effective search space: 3212824650464
Effective search space used: 3212824650464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)