Animal-Genome cDNA 20110601C-002814


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039670.1| hypothetical protein LOC515589 [Bos taurus].      315   5e-86

>ref|NP_001039670.1| hypothetical protein LOC515589 [Bos taurus].
          Length = 174

 Score =  315 bits (806), Expect = 5e-86
 Identities = 153/174 (87%), Positives = 156/174 (89%)
 Frame = +1

Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
           MAAANKGNK RVRSIRFAT HDAE SQSHVHFDEKLHD            FLVKVGFLKI
Sbjct: 1   MAAANKGNKSRVRSIRFATSHDAESSQSHVHFDEKLHDSVVMVTQESDSSFLVKVGFLKI 60

Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
           LHRYEITFTLPPVHRLSKDVRE PVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61  LHRYEITFTLPPVHRLSKDVRETPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120

Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           LLACEGG+ TCVRV+VQARVMDRHHGTPMLLDGV+CVGAELEYDSEHSDW GFD
Sbjct: 121 LLACEGGSDTCVRVIVQARVMDRHHGTPMLLDGVRCVGAELEYDSEHSDWRGFD 174


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,707,888
Number of extensions: 924549
Number of successful extensions: 4387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4380
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534359.1| PREDICTED: similar to Protein C20orf27 [Canis f...   326   2e-89

>ref|XP_534359.1| PREDICTED: similar to Protein C20orf27 [Canis familiaris].
          Length = 174

 Score =  326 bits (836), Expect = 2e-89
 Identities = 156/174 (89%), Positives = 159/174 (91%)
 Frame = +1

Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
           MAAANKGNKPRVRSIRFA GHDAEGSQSHVHFDEKLHD            FLVKVGFLKI
Sbjct: 1   MAAANKGNKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDSSFLVKVGFLKI 60

Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
           LHRYEITFTLPPVHRLSKD+REAPVPSLHLKLLS+MP+PEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61  LHRYEITFTLPPVHRLSKDIREAPVPSLHLKLLSIMPVPEGYSVKCEYSAHKEGVLKEEM 120

Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           LLACEGG GTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGAGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,032,268
Number of extensions: 948164
Number of successful extensions: 4473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4468
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001034229.1| hypothetical protein LOC54976 [Homo sapiens].     315   3e-86

>ref|NP_001034229.1| hypothetical protein LOC54976 [Homo sapiens].
          Length = 199

 Score =  315 bits (808), Expect = 3e-86
 Identities = 154/178 (86%), Positives = 159/178 (89%)
 Frame = +1

Query: 232 GRASMAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVG 411
           GR ++AA   GNKPRVRSIRFA GHDAEGS SHVHFDEKLHD            FLVKVG
Sbjct: 25  GRRAIAA---GNKPRVRSIRFAAGHDAEGSHSHVHFDEKLHDSVVMVTQESDSSFLVKVG 81

Query: 412 FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVL 591
           FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV+P+PEGYSVKCEYSAHKEGVL
Sbjct: 82  FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVL 141

Query: 592 KEEMLLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           KEE+LLACEGGTGTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 142 KEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 199


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,381,624
Number of extensions: 929740
Number of successful extensions: 4479
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4472
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080367.1| hypothetical protein LOC67326 [Mus musculus].        298   6e-81

>ref|NP_080367.1| hypothetical protein LOC67326 [Mus musculus].
          Length = 174

 Score =  298 bits (762), Expect = 6e-81
 Identities = 146/174 (83%), Positives = 150/174 (86%)
 Frame = +1

Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
           MAAAN+G+KPRVRSIRFA GHDAEGSQSHVHFDEKLHD            FLVKVGFLKI
Sbjct: 1   MAAANRGSKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDNSFLVKVGFLKI 60

Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
           LHRYEITFTLPPV RLSKD+RE PV SLHLKLLSV P  EGYS+KCEYSAHKEGVLKEEM
Sbjct: 61  LHRYEITFTLPPVRRLSKDIRETPVHSLHLKLLSVTPTSEGYSIKCEYSAHKEGVLKEEM 120

Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           LLACEG  GTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSE SDW GFD
Sbjct: 121 LLACEGDIGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEQSDWLGFD 174


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,977,174
Number of extensions: 768955
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3492
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359970.1| PREDICTED: UPF0687 protein C20orf27-like iso...   333   1e-91
Alignment   gi|XP_003134375.2| PREDICTED: UPF0687 protein C20orf27-like iso...   333   1e-91

>ref|XP_003359970.1| PREDICTED: UPF0687 protein C20orf27-like isoform 2 [Sus scrofa].
          Length = 174

 Score =  333 bits (853), Expect = 1e-91
 Identities = 162/174 (93%), Positives = 162/174 (93%)
 Frame = +1

Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
           MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHD            FLVKVGFLKI
Sbjct: 1   MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDSVVMVSQESESSFLVKVGFLKI 60

Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
           LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61  LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120

Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174


>ref|XP_003134375.2| PREDICTED: UPF0687 protein C20orf27-like isoform 1 [Sus scrofa].
          Length = 174

 Score =  333 bits (853), Expect = 1e-91
 Identities = 162/174 (93%), Positives = 162/174 (93%)
 Frame = +1

Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
           MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHD            FLVKVGFLKI
Sbjct: 1   MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDSVVMVSQESESSFLVKVGFLKI 60

Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
           LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61  LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120

Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
           LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,802,847
Number of extensions: 600586
Number of successful extensions: 2834
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2834
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002814
         (977 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr17                                                         559   e-156
Sscrofa_Chr13                                                         289   1e-75

>Sscrofa_Chr17 
||          Length = 69701581

 Score =  559 bits (282), Expect = e-156
 Identities = 310/314 (98%), Gaps = 4/314 (1%)
 Strand = Plus / Plus

                                                                            
Query: 667      gaccgacaccacggcacacccatgctgctagatggtgtcaagtgcgtgggtgctgagctt 726
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283647 gaccgacaccacggcacacccatgctgctagatggtgtcaagtgcgtgggtgctgagctt 36283706

                                                                            
Query: 727      gaatacgactcggagcacagtgattggcacggcttcgactgaggcccgcgcccccgcctg 786
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283707 gaatacgactcggagcacagtgattggcacggcttcgactgaggcccgcgcccccgcctg 36283766

                                                                            
Query: 787      ccttggggcccctcagccttaaaccccacct-cctctccctgaatgctgcgtgacggtgt 845
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 36283767 ccttggggcccctcagccttaaaccccacctccctctccctgaatgctgcgtgacggtgt 36283826

                                                                            
Query: 846      agcttccgcacccctccccggggtgggcatggaggtggagggtccaagggcctcc-agcc 904
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36283827 agcttccgcacccctccccggggtgggcatggaggtggagggtccaagggcctccaagcc 36283886

                                                                            
Query: 905      agagccctgcccacacctctcacctcatatgtgtgccaccctccctg-ctccccagcgtc 963
                |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 36283887 agagccctgcccacacctctcacctcatatgtgtgcca-cctccctgcctccccagcgtc 36283945

                              
Query: 964      ctcctctcccactt 977
                ||||||||||||||
Sbjct: 36283946 ctcctctcccactt 36283959



 Score =  281 bits (142), Expect = 3e-73
 Identities = 145/146 (99%)
 Strand = Plus / Plus

                                                                            
Query: 1        gcggggctctctcttcgtgttaggcgttgagcccccgctgccgccgcgaccgccaccggt 60
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36275243 gcggggctctctcctcgtgttaggcgttgagcccccgctgccgccgcgaccgccaccggt 36275302

                                                                            
Query: 61       gccgcctttgccgttgcctctgctgcctctgcccccgcggtcgcccctgcccggcctggt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36275303 gccgcctttgccgttgcctctgctgcctctgcccccgcggtcgcccctgcccggcctggt 36275362

                                          
Query: 121      ccggcgtcggggtgatccctgcaggg 146
                ||||||||||||||||||||||||||
Sbjct: 36275363 ccggcgtcggggtgatccctgcaggg 36275388



 Score =  248 bits (125), Expect = 5e-63
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                            
Query: 543      aggttacagcgtcaagtgtgagtactcggcgcacaaggagggcgtcctcaaggaggagat 602
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283287 aggttacagcgtcaagtgtgagtactcggcgcacaaggagggcgtcctcaaggaggagat 36283346

                                                                            
Query: 603      gctgctggcctgtgaaggtggcaccggcacctgcgtgcgggtcgtggtacaggcacgcgt 662
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283347 gctgctggcctgtgaaggtggcaccggcacctgcgtgcgggtcgtggtacaggcacgcgt 36283406

                     
Query: 663      catgg 667
                |||||
Sbjct: 36283407 catgg 36283411



 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                            
Query: 145      ggcgcccgctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggc 204
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36282340 ggcgcccgctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggc 36282399

                                                                           
Query: 205      aggagctgcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaaggg 263
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36282400 aggagctgcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaaggg 36282458


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  289 bits (146), Expect = 1e-75
 Identities = 227/254 (89%)
 Strand = Plus / Plus

                                                                            
Query: 152      gctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggcaggagct 211
                |||||||||| | ||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 35671650 gctggtgtccttcgagcatgggaggctgctgaacttgaccagtggtgtctggcaggagct 35671709

                                                                            
Query: 212      gcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaagggcaacaagc 271
                |||||||||||||| | ||||||||||| | |||||||| || |||||| ||||||| ||
Sbjct: 35671710 gcgtgtctcaccccatagcagggagggcattcatggctgaagtcaacaaaggcaacaggc 35671769

                                                                            
Query: 272      ccagagtccggagtatccgctttgcaacaggccatgatgcagaaggctcccagagccatg 331
                |||||||| || ||||||  ||| |||||||| |||||||||||||||||||||||||  
Sbjct: 35671770 ccagagtctggtgtatccagtttacaacaggctatgatgcagaaggctcccagagccaca 35671829

                                                                            
Query: 332      tccactttgatgagaagctgcatgactccgtggtcatggtcagccaggagagtgagagca 391
                |||||||||||||||||||||||||||| |||||||||||||  ||||||||  | ||||
Sbjct: 35671830 tccactttgatgagaagctgcatgactctgtggtcatggtcacacaggagagcaacagca 35671889

                              
Query: 392      gctttctggtcaag 405
                ||||||||||||||
Sbjct: 35671890 gctttctggtcaag 35671903


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,641,778
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 5
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)