Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039670.1| hypothetical protein LOC515589 [Bos taurus]. 315 5e-86
>ref|NP_001039670.1| hypothetical protein LOC515589 [Bos taurus].
Length = 174
Score = 315 bits (806), Expect = 5e-86
Identities = 153/174 (87%), Positives = 156/174 (89%)
Frame = +1
Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
MAAANKGNK RVRSIRFAT HDAE SQSHVHFDEKLHD FLVKVGFLKI
Sbjct: 1 MAAANKGNKSRVRSIRFATSHDAESSQSHVHFDEKLHDSVVMVTQESDSSFLVKVGFLKI 60
Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
LHRYEITFTLPPVHRLSKDVRE PVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61 LHRYEITFTLPPVHRLSKDVRETPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120
Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
LLACEGG+ TCVRV+VQARVMDRHHGTPMLLDGV+CVGAELEYDSEHSDW GFD
Sbjct: 121 LLACEGGSDTCVRVIVQARVMDRHHGTPMLLDGVRCVGAELEYDSEHSDWRGFD 174
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,707,888
Number of extensions: 924549
Number of successful extensions: 4387
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4380
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534359.1| PREDICTED: similar to Protein C20orf27 [Canis f... 326 2e-89
>ref|XP_534359.1| PREDICTED: similar to Protein C20orf27 [Canis familiaris].
Length = 174
Score = 326 bits (836), Expect = 2e-89
Identities = 156/174 (89%), Positives = 159/174 (91%)
Frame = +1
Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
MAAANKGNKPRVRSIRFA GHDAEGSQSHVHFDEKLHD FLVKVGFLKI
Sbjct: 1 MAAANKGNKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDSSFLVKVGFLKI 60
Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
LHRYEITFTLPPVHRLSKD+REAPVPSLHLKLLS+MP+PEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61 LHRYEITFTLPPVHRLSKDIREAPVPSLHLKLLSIMPVPEGYSVKCEYSAHKEGVLKEEM 120
Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
LLACEGG GTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGAGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,032,268
Number of extensions: 948164
Number of successful extensions: 4473
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4468
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034229.1| hypothetical protein LOC54976 [Homo sapiens]. 315 3e-86
>ref|NP_001034229.1| hypothetical protein LOC54976 [Homo sapiens].
Length = 199
Score = 315 bits (808), Expect = 3e-86
Identities = 154/178 (86%), Positives = 159/178 (89%)
Frame = +1
Query: 232 GRASMAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVG 411
GR ++AA GNKPRVRSIRFA GHDAEGS SHVHFDEKLHD FLVKVG
Sbjct: 25 GRRAIAA---GNKPRVRSIRFAAGHDAEGSHSHVHFDEKLHDSVVMVTQESDSSFLVKVG 81
Query: 412 FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVL 591
FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSV+P+PEGYSVKCEYSAHKEGVL
Sbjct: 82 FLKILHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVVPVPEGYSVKCEYSAHKEGVL 141
Query: 592 KEEMLLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
KEE+LLACEGGTGTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 142 KEEILLACEGGTGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 199
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,381,624
Number of extensions: 929740
Number of successful extensions: 4479
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4472
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080367.1| hypothetical protein LOC67326 [Mus musculus]. 298 6e-81
>ref|NP_080367.1| hypothetical protein LOC67326 [Mus musculus].
Length = 174
Score = 298 bits (762), Expect = 6e-81
Identities = 146/174 (83%), Positives = 150/174 (86%)
Frame = +1
Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
MAAAN+G+KPRVRSIRFA GHDAEGSQSHVHFDEKLHD FLVKVGFLKI
Sbjct: 1 MAAANRGSKPRVRSIRFAAGHDAEGSQSHVHFDEKLHDSVVMVTQESDNSFLVKVGFLKI 60
Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
LHRYEITFTLPPV RLSKD+RE PV SLHLKLLSV P EGYS+KCEYSAHKEGVLKEEM
Sbjct: 61 LHRYEITFTLPPVRRLSKDIRETPVHSLHLKLLSVTPTSEGYSIKCEYSAHKEGVLKEEM 120
Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
LLACEG GTCVRV VQARVMDRHHGTPMLLDGVKCVGAELEYDSE SDW GFD
Sbjct: 121 LLACEGDIGTCVRVTVQARVMDRHHGTPMLLDGVKCVGAELEYDSEQSDWLGFD 174
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,977,174
Number of extensions: 768955
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3492
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359970.1| PREDICTED: UPF0687 protein C20orf27-like iso... 333 1e-91
Alignment gi|XP_003134375.2| PREDICTED: UPF0687 protein C20orf27-like iso... 333 1e-91
>ref|XP_003359970.1| PREDICTED: UPF0687 protein C20orf27-like isoform 2 [Sus scrofa].
Length = 174
Score = 333 bits (853), Expect = 1e-91
Identities = 162/174 (93%), Positives = 162/174 (93%)
Frame = +1
Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHD FLVKVGFLKI
Sbjct: 1 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDSVVMVSQESESSFLVKVGFLKI 60
Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120
Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174
>ref|XP_003134375.2| PREDICTED: UPF0687 protein C20orf27-like isoform 1 [Sus scrofa].
Length = 174
Score = 333 bits (853), Expect = 1e-91
Identities = 162/174 (93%), Positives = 162/174 (93%)
Frame = +1
Query: 244 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDXXXXXXXXXXXXFLVKVGFLKI 423
MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHD FLVKVGFLKI
Sbjct: 1 MAAANKGNKPRVRSIRFATGHDAEGSQSHVHFDEKLHDSVVMVSQESESSFLVKVGFLKI 60
Query: 424 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 603
LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM
Sbjct: 61 LHRYEITFTLPPVHRLSKDVREAPVPSLHLKLLSVMPIPEGYSVKCEYSAHKEGVLKEEM 120
Query: 604 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 765
LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD
Sbjct: 121 LLACEGGTGTCVRVVVQARVMDRHHGTPMLLDGVKCVGAELEYDSEHSDWHGFD 174
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,802,847
Number of extensions: 600586
Number of successful extensions: 2834
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2834
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002814
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 559 e-156
Sscrofa_Chr13 289 1e-75
>Sscrofa_Chr17
|| Length = 69701581
Score = 559 bits (282), Expect = e-156
Identities = 310/314 (98%), Gaps = 4/314 (1%)
Strand = Plus / Plus
Query: 667 gaccgacaccacggcacacccatgctgctagatggtgtcaagtgcgtgggtgctgagctt 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283647 gaccgacaccacggcacacccatgctgctagatggtgtcaagtgcgtgggtgctgagctt 36283706
Query: 727 gaatacgactcggagcacagtgattggcacggcttcgactgaggcccgcgcccccgcctg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283707 gaatacgactcggagcacagtgattggcacggcttcgactgaggcccgcgcccccgcctg 36283766
Query: 787 ccttggggcccctcagccttaaaccccacct-cctctccctgaatgctgcgtgacggtgt 845
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 36283767 ccttggggcccctcagccttaaaccccacctccctctccctgaatgctgcgtgacggtgt 36283826
Query: 846 agcttccgcacccctccccggggtgggcatggaggtggagggtccaagggcctcc-agcc 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 36283827 agcttccgcacccctccccggggtgggcatggaggtggagggtccaagggcctccaagcc 36283886
Query: 905 agagccctgcccacacctctcacctcatatgtgtgccaccctccctg-ctccccagcgtc 963
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 36283887 agagccctgcccacacctctcacctcatatgtgtgcca-cctccctgcctccccagcgtc 36283945
Query: 964 ctcctctcccactt 977
||||||||||||||
Sbjct: 36283946 ctcctctcccactt 36283959
Score = 281 bits (142), Expect = 3e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 1 gcggggctctctcttcgtgttaggcgttgagcccccgctgccgccgcgaccgccaccggt 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36275243 gcggggctctctcctcgtgttaggcgttgagcccccgctgccgccgcgaccgccaccggt 36275302
Query: 61 gccgcctttgccgttgcctctgctgcctctgcccccgcggtcgcccctgcccggcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36275303 gccgcctttgccgttgcctctgctgcctctgcccccgcggtcgcccctgcccggcctggt 36275362
Query: 121 ccggcgtcggggtgatccctgcaggg 146
||||||||||||||||||||||||||
Sbjct: 36275363 ccggcgtcggggtgatccctgcaggg 36275388
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 543 aggttacagcgtcaagtgtgagtactcggcgcacaaggagggcgtcctcaaggaggagat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283287 aggttacagcgtcaagtgtgagtactcggcgcacaaggagggcgtcctcaaggaggagat 36283346
Query: 603 gctgctggcctgtgaaggtggcaccggcacctgcgtgcgggtcgtggtacaggcacgcgt 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36283347 gctgctggcctgtgaaggtggcaccggcacctgcgtgcgggtcgtggtacaggcacgcgt 36283406
Query: 663 catgg 667
|||||
Sbjct: 36283407 catgg 36283411
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 145 ggcgcccgctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36282340 ggcgcccgctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggc 36282399
Query: 205 aggagctgcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaaggg 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36282400 aggagctgcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaaggg 36282458
>Sscrofa_Chr13
|| Length = 218635234
Score = 289 bits (146), Expect = 1e-75
Identities = 227/254 (89%)
Strand = Plus / Plus
Query: 152 gctggtgtccctggagcatgggaggctgctgagcttggccggtggtgtctggcaggagct 211
|||||||||| | ||||||||||||||||||| |||| || |||||||||||||||||||
Sbjct: 35671650 gctggtgtccttcgagcatgggaggctgctgaacttgaccagtggtgtctggcaggagct 35671709
Query: 212 gcgtgtctcaccccgtggcagggagggcgtccatggctgcagccaacaagggcaacaagc 271
|||||||||||||| | ||||||||||| | |||||||| || |||||| ||||||| ||
Sbjct: 35671710 gcgtgtctcaccccatagcagggagggcattcatggctgaagtcaacaaaggcaacaggc 35671769
Query: 272 ccagagtccggagtatccgctttgcaacaggccatgatgcagaaggctcccagagccatg 331
|||||||| || |||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct: 35671770 ccagagtctggtgtatccagtttacaacaggctatgatgcagaaggctcccagagccaca 35671829
Query: 332 tccactttgatgagaagctgcatgactccgtggtcatggtcagccaggagagtgagagca 391
|||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||
Sbjct: 35671830 tccactttgatgagaagctgcatgactctgtggtcatggtcacacaggagagcaacagca 35671889
Query: 392 gctttctggtcaag 405
||||||||||||||
Sbjct: 35671890 gctttctggtcaag 35671903
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,641,778
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 5
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)