Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029899.1| X-box-binding protein 1 [Bos taurus]. 379 e-105
>ref|NP_001029899.1| X-box-binding protein 1 [Bos taurus].
Length = 261
Score = 379 bits (974), Expect = e-105
Identities = 198/247 (80%), Positives = 202/247 (81%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG GAPAGRALP+MVPGQ+GASPE ASG PPQ RKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGQPAATG--GAPAGRALPVMVPGQQGASPEGASGVPPQARKRQRLTHLSPEEKA 73
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 74 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQEL 133
Query: 453 RQRLGMDALVTEEEAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILTV 632
RQRLGMDALVTEEEAETKGNGAG VAGSAESAALRLRAPLQQVQAQLSPLQNISPW L
Sbjct: 134 RQRLGMDALVTEEEAETKGNGAGLVAGSAESAALRLRAPLQQVQAQLSPLQNISPWTLMA 193
Query: 633 LTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGRHQ 812
LTLQTLSL S WAFCSTWTQSCSSDVLPQ+LPAWSSSQK TQKDPVPY+PPLLH WGRHQ
Sbjct: 194 LTLQTLSLTSCWAFCSTWTQSCSSDVLPQSLPAWSSSQKWTQKDPVPYRPPLLHPWGRHQ 253
Query: 813 PSWKPLM 833
PSWKPLM
Sbjct: 254 PSWKPLM 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,411,612
Number of extensions: 1550932
Number of successful extensions: 6831
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6810
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 410
Effective length of database: 14,140,958
Effective search space: 5797792780
Effective search space used: 5797792780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854633.1| PREDICTED: similar to X-box binding protein 1 [... 326 e-135
>ref|XP_854633.1| PREDICTED: similar to X-box binding protein 1 [Canis familiaris].
Length = 385
Score = 326 bits (836), Expect(2) = e-135
Identities = 168/222 (75%), Positives = 172/222 (77%)
Frame = +2
Query: 542 VRSTQTTCTSAAGAGPVVTPPEHLPMXXXXXXXXXXXXXILLGILFNLDPVMFFRCPSPD 721
VRSTQTTCTSAAGAGPVVTPPEHLPM ILLGILFNLDPVMFFRCPSP+
Sbjct: 164 VRSTQTTCTSAAGAGPVVTPPEHLPMDSDSVDSSDSESDILLGILFNLDPVMFFRCPSPE 223
Query: 722 SASLEQLPEVDPEXXXXXXXXXXXXXXXXXXKLEAINEVIRFDHVYTKPLVLEIPSETES 901
S SLEQLPEV PE KLEAINE+IRFDHVYTKPLVLEIPSETES
Sbjct: 224 STSLEQLPEVHPEGPSSLPASPSPSLGTSSAKLEAINELIRFDHVYTKPLVLEIPSETES 283
Query: 902 QANVVVKIEEAPSSPSEKDRPEFTVSVKEELTEDDFIPELGISDLLSTSHCLKPSSCLLD 1081
QANVVVKIEEAP SPSEKD PEFTVSVKEEL EDDFIPELG SDLLS+SHCLKPSSCLLD
Sbjct: 284 QANVVVKIEEAPFSPSEKDHPEFTVSVKEELVEDDFIPELGTSDLLSSSHCLKPSSCLLD 343
Query: 1082 AYSDCSYEGXXXXXXXXXXXXGVDHSWEDTFASELFPQLISV 1207
AYSDC YEG GVDHSWEDTFA+ELFPQLISV
Sbjct: 344 AYSDCGYEGSPSPFSDMSSLLGVDHSWEDTFANELFPQLISV 385
Score = 176 bits (447), Expect(2) = e-135
Identities = 96/138 (69%), Positives = 98/138 (71%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG GAPAGRALP+MVPG RGASPEA GGPPQ RKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGKPAAAAAAGAPAGRALPLMVPGPRGASPEAPCGGPPQARKRQRLTHLSPEEKA 75
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 76 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQEL 135
Query: 453 RQRLGMDALVTEEEAETK 506
RQRLGMD L TEEEAET+
Sbjct: 136 RQRLGMDTLATEEEAETQ 153
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 59,829,390
Number of extensions: 1585650
Number of successful extensions: 6977
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6962
Number of HSP's successfully gapped: 2
Length of query: 517
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 410
Effective length of database: 15,307,552
Effective search space: 6276096320
Effective search space used: 6276096320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005071.2| X-box-binding protein 1 isoform XBP1(U) [Homo s... 358 6e-99
Alignment gi|NP_001073007.1| X-box-binding protein 1 isoform XBP1(S) [Hom... 286 5e-77
>ref|NP_005071.2| X-box-binding protein 1 isoform XBP1(U) [Homo sapiens].
Length = 261
Score = 358 bits (920), Expect = 6e-99
Identities = 189/247 (76%), Positives = 195/247 (78%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG GAPAG+ALP+MVP QRGASPEAASGG PQ RKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGQPASAA--GAPAGQALPLMVPAQRGASPEAASGGLPQARKRQRLTHLSPEEKA 73
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 74 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQEL 133
Query: 453 RQRLGMDALVTEEEAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILTV 632
RQRLGMDALV EEEAE KGN PVAGSAESAALRLRAPLQQVQAQLSPLQNISPWIL V
Sbjct: 134 RQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILAV 193
Query: 633 LTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGRHQ 812
LTLQ SLIS WAF +TWTQSCSS+ LPQ+LPAW SSQ+STQKDPVPYQPP L WGRHQ
Sbjct: 194 LTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVPYQPPFLCQWGRHQ 253
Query: 813 PSWKPLM 833
PSWKPLM
Sbjct: 254 PSWKPLM 260
>ref|NP_001073007.1| X-box-binding protein 1 isoform XBP1(S) [Homo sapiens].
Length = 376
Score = 286 bits (731), Expect = 5e-77
Identities = 149/222 (67%), Positives = 160/222 (72%)
Frame = +2
Query: 542 VRSTQTTCTSAAGAGPVVTPPEHLPMXXXXXXXXXXXXXILLGILFNLDPVMFFRCPSPD 721
VR + SAAGAGPVVTPPEHLPM ILLGIL NLDPVMFF+CPSP+
Sbjct: 155 VRPVAGSAESAAGAGPVVTPPEHLPMDSGGIDSSDSESDILLGILDNLDPVMFFKCPSPE 214
Query: 722 SASLEQLPEVDPEXXXXXXXXXXXXXXXXXXKLEAINEVIRFDHVYTKPLVLEIPSETES 901
ASLE+LPEV PE KLEAINE+IRFDH+YTKPLVLEIPSETES
Sbjct: 215 PASLEELPEVYPEGPSSLPASLSLSVGTSSAKLEAINELIRFDHIYTKPLVLEIPSETES 274
Query: 902 QANVVVKIEEAPSSPSEKDRPEFTVSVKEELTEDDFIPELGISDLLSTSHCLKPSSCLLD 1081
QANVVVKIEEAP SPSE D PEF VSVKEE EDD +PELGIS+LLS+SHC KPSSCLLD
Sbjct: 275 QANVVVKIEEAPLSPSENDHPEFIVSVKEEPVEDDLVPELGISNLLSSSHCPKPSSCLLD 334
Query: 1082 AYSDCSYEGXXXXXXXXXXXXGVDHSWEDTFASELFPQLISV 1207
AYSDC Y G GV+HSWEDTFA+ELFPQLISV
Sbjct: 335 AYSDCGYGGSLSPFSDMSSLLGVNHSWEDTFANELFPQLISV 376
Score = 192 bits (488), Expect = 7e-49
Identities = 109/153 (71%), Positives = 111/153 (72%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG GAPAG+ALP+MVP QRGASPEAASGG PQ RKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGQPASAA--GAPAGQALPLMVPAQRGASPEAASGGLPQARKRQRLTHLSPEEKA 73
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 74 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQEL 133
Query: 453 RQRLGMDALVTEEEAETKGNGAGPVAGSAESAA 551
RQRLGMDALV EEEAE KGN PVAGSAESAA
Sbjct: 134 RQRLGMDALVAEEEAEAKGNEVRPVAGSAESAA 166
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,513,799
Number of extensions: 1546459
Number of successful extensions: 6933
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6912
Number of HSP's successfully gapped: 3
Length of query: 517
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 410
Effective length of database: 14,770,016
Effective search space: 6055706560
Effective search space used: 6055706560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038870.2| X-box-binding protein 1 [Mus musculus]. 300 2e-81
>ref|NP_038870.2| X-box-binding protein 1 [Mus musculus].
Length = 267
Score = 300 bits (769), Expect = 2e-81
Identities = 170/260 (65%), Positives = 181/260 (69%), Gaps = 2/260 (0%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG A GRALP+MVPG R A EA+ G PQ RKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGQP-------ASGGRALPLMVPGPRAAGSEAS--GTPQARKRQRLTHLSPEEKA 66
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 67 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENHKLQLENQLLREKTHGLVVENQEL 126
Query: 453 RQRLGMDALVTEE--EAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWIL 626
R RLGMD L +E E E KG+G VAGSAESAALRL APLQQVQAQLSP QNI PW L
Sbjct: 127 RTRLGMDTLDPDEVPEVEAKGSGVRLVAGSAESAALRLCAPLQQVQAQLSPPQNIFPWTL 186
Query: 627 TVLTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGR 806
T+L LQ LSLIS WAF ++WT SC S+VLPQ+L W +SQ+STQKD VPYQPP L WG
Sbjct: 187 TLLPLQILSLISFWAFWTSWTLSCFSNVLPQSLLVWRNSQRSTQKDLVPYQPPFLCQWGP 246
Query: 807 HQPSWKPLMK*FVLTTYIQS 866
HQPSWKPLM FVLT Y S
Sbjct: 247 HQPSWKPLMNSFVLTMYTPS 266
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,401,732
Number of extensions: 1284961
Number of successful extensions: 5271
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5238
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 411
Effective length of database: 12,433,743
Effective search space: 5110268373
Effective search space used: 5110268373
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136308.1| X-box binding protein 1 pseudogene 1 [Sus sc... 417 e-117
>ref|NP_001136308.1| X-box binding protein 1 pseudogene 1 [Sus scrofa].
Length = 263
Score = 417 bits (1073), Expect = e-117
Identities = 214/248 (86%), Positives = 214/248 (86%)
Frame = +3
Query: 93 KVLLLSGXXXXXXXXGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 272
KVLLLSG GAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA
Sbjct: 16 KVLLLSGKPAAAAAAGAPAGRALPIMVPGQRGASPEAASGGPPQTRKRQRLTHLSPEEKA 75
Query: 273 LRRKLKNRVAAQTARDRKKARMSXXXXXXXXXXXXXXXXXXXXXXXXXXTHGLVVENQEL 452
LRRKLKNRVAAQTARDRKKARMS THGLVVENQEL
Sbjct: 76 LRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKTHGLVVENQEL 135
Query: 453 RQRLGMDALVTEEEAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILTV 632
RQRLGMDALVTEEEAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILTV
Sbjct: 136 RQRLGMDALVTEEEAETKGNGAGPVAGSAESAALRLRAPLQQVQAQLSPLQNISPWILTV 195
Query: 633 LTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGRHQ 812
LTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGRHQ
Sbjct: 196 LTLQTLSLISSWAFCSTWTQSCSSDVLPQTLPAWSSSQKSTQKDPVPYQPPLLHHWGRHQ 255
Query: 813 PSWKPLMK 836
PSWKPLMK
Sbjct: 256 PSWKPLMK 263
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,222,403
Number of extensions: 1023285
Number of successful extensions: 4466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4459
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 414
Effective length of database: 8,779,541
Effective search space: 3634729974
Effective search space used: 3634729974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002817
(1551 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1063 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 1063 bits (536), Expect = 0.0
Identities = 558/565 (98%), Gaps = 1/565 (0%)
Strand = Plus / Minus
Query: 987 aagaacttacagaagatgacttcattccagagctgggtatctcagatctgctttcaacca 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 49016650 aagaacttacagaagatgacttcattccagagctgggtatctcagatctgcttcnaacca 49016591
Query: 1047 gccactgcctaaagccatcttcctgcctactggatgcttatagtgactgtagttatgagg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016590 gccactgcctaaagccatcttcctgcctactggatgcttatagtgactgtagttatgagg 49016531
Query: 1107 gttccccttctcccctaagtgacatgtcctctctgcttggtgtagaccattcgtgggagg 1166
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016530 gttcnccttctcccctaagtgacatgtcctctctgcttggtgtagaccattcgtgggagg 49016471
Query: 1167 acacttttgccagtgaactctttccccagctgattagtgtctaaggagtgatcagtactg 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016470 acacttttgccagtgaactctttccccagctgattagtgtctaaggagtgatcagtactg 49016411
Query: 1227 ttaaccctttttcttgactattacactgcctggaggatagcacagaagcctgtggttcat 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016410 ttaaccctttttcttgactattacactgcctggaggatagcacagaagcctgtggttcat 49016351
Query: 1287 tcagaaagctagagtagagggtgtacagtcctagagtattcctctaatatatttgttcaa 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016350 tcagaaagctagagtagagggtgtacagtcctagagtattcctctaatatatttgttcaa 49016291
Query: 1347 acctcataggtcaccccaggtattgtcttttgacattcagtggtctaggacatgcaggtt 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49016290 acctcataggtcaccccaggtattgtcttttgacattcagtggtctaggacatgcaggtt 49016231
Query: 1407 gttactataatccagaattatggcttctgaagtacctttatcttaanggcagtggtttgc 1466
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 49016230 gttactataatccagaattatggcttctgaggtacctttatcttaagggcagtggtttgc 49016171
Query: 1467 cctaaaatacttgggtaagggtcactggaacaagagtcctagacatggaaataatgaatg 1526
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 49016170 cctaaaatacttgggtaagggtcactgg-acaagagtcctagacatggaattaatgaatg 49016112
Query: 1527 gccctttatcatttctcttcacccc 1551
|||||||||||||||||||||||||
Sbjct: 49016111 gccctttatcatttctcttcacccc 49016087
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,966,897
Number of extensions: 286
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 1
Length of query: 1551
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1530
Effective length of database: 2,808,413,156
Effective search space: 4296872128680
Effective search space used: 4296872128680
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)