Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos tauru... 453 e-127
Alignment gi|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bo... 239 3e-63
Alignment gi|XP_002687965.1| PREDICTED: microtubule associated monoxygena... 50 2e-06
Alignment gi|XP_002704520.1| PREDICTED: microtubule associated monoxygena... 50 2e-06
>ref|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos taurus].
Length = 274
Score = 453 bits (1166), Expect = e-127
Identities = 218/234 (93%), Positives = 226/234 (96%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MAVRKALI+LAHSE+TSFNYAMKEAA+EALKR+GWEV VSDLYAMNFNPVISRKDITGKL
Sbjct: 1 MAVRKALIVLAHSERTSFNYAMKEAAIEALKRKGWEVTVSDLYAMNFNPVISRKDITGKL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KDPGNFQYPAET LAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPGNFQYPAETVLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
LIGEFAY YAAMYDKGPFRNKKAVLSITTGGSGSMYSL GIHGDMNI+LWPIQSGTLHFC
Sbjct: 121 LIGEFAYKYAAMYDKGPFRNKKAVLSITTGGSGSMYSLHGIHGDMNIILWPIQSGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQLTYSIGHTPEDAR+QILE WKKRLE IWDE PLYFAPSSLFDL F+
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARVQILEGWKKRLENIWDEMPLYFAPSSLFDLNFQ 234
>ref|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bos taurus].
Length = 231
Score = 239 bits (610), Expect = 3e-63
Identities = 114/229 (49%), Positives = 154/229 (67%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E S N ++K+ AV L ++G V VSDLYAMNF P + KDITG L
Sbjct: 1 MAGKKVLIVYAHQEPRSLNGSLKDVAVAELSQQGCSVIVSDLYAMNFEPRATGKDITGTL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+PG F Y E AYK+ LS DI+ EQKK++ A+LVIFQFPL WF VPA+LKGW +RV
Sbjct: 61 SNPGFFNYGVEAHKAYKKQSLSSDIIEEQKKLQEANLVIFQFPLYWFSVPAVLKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ + YD G + K A+LS+TTGG+ SM+S G++GD LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDFPGSYDDGFLKGKLAILSLTTGGTASMFSKTGVNGDFRYFLWPLQHGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ+++ E+ R +++ W +RL+ +W+E P+ +P F
Sbjct: 181 GFKVLAPQISFGPEMASEEERKRMVASWAQRLKTLWEEEPIQCSPPWYF 229
>ref|XP_002687965.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1781
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 61 PAAEVSPALHPRAHGAAPPLLVPQSVGR--ARSCIK*PGAPPAARVTPP--RSQPEDLQP 228
P SPA P A A PPL + R A S + P PPA P RSQPE P
Sbjct: 1129 PTGLSSPARSPGAQSAHPPLAAVATGVRSPAESPLPEPSTPPAEPEAHPPIRSQPEARTP 1188
Query: 229 PAPSQLESARQPAARPICAPPEP 297
P+P+ + P PIC+ P+P
Sbjct: 1189 PSPASPQRPSPPTQLPICSQPQP 1211
>ref|XP_002704520.1| PREDICTED: microtubule associated monoxygenase, calponin and LIM
domain containing 3 [Bos taurus].
Length = 1960
Score = 50.4 bits (119), Expect = 2e-06
Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +1
Query: 61 PAAEVSPALHPRAHGAAPPLLVPQSVGR--ARSCIK*PGAPPAARVTPP--RSQPEDLQP 228
P SPA P A A PPL + R A S + P PPA P RSQPE P
Sbjct: 1160 PTGLSSPARSPGAQSAHPPLAAVATGVRSPAESPLPEPSTPPAEPEAHPPIRSQPEARTP 1219
Query: 229 PAPSQLESARQPAARPICAPPEP 297
P+P+ + P PIC+ P+P
Sbjct: 1220 PSPASPQRPSPPTQLPICSQPQP 1242
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,214,934
Number of extensions: 1395865
Number of successful extensions: 9841
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9277
Number of HSP's successfully gapped: 4
Length of query: 338
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,273,310
Effective search space: 3354227850
Effective search space used: 3354227850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [qu... 434 e-122
Alignment gi|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 226 2e-59
Alignment gi|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 164 1e-40
Alignment gi|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 144 1e-34
>ref|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [quinone] 1 (Quinone
reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase)
(Phylloquinone reductase) (Menadione reductase) [Canis
familiaris].
Length = 433
Score = 434 bits (1115), Expect = e-122
Identities = 209/233 (89%), Positives = 219/233 (93%)
Frame = +3
Query: 300 AVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKLK 479
A RKALI+LAH+EK SFN+AMKEAAVEAL+ GWEV VSDLYAMNFNPVISR+D+TG K
Sbjct: 161 AARKALIVLAHAEKASFNHAMKEAAVEALEATGWEVTVSDLYAMNFNPVISRRDVTGTPK 220
Query: 480 DPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERVL 659
DPGNFQYPAE ALAYKEGRLSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERVL
Sbjct: 221 DPGNFQYPAEAALAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERVL 280
Query: 660 IGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFCG 839
IGEFAYTYAAMYDKGPFRNKK VLSITTGGSGSMYSLQGIHGDMNI+LWPIQSGTLHFCG
Sbjct: 281 IGEFAYTYAAMYDKGPFRNKKTVLSITTGGSGSMYSLQGIHGDMNIILWPIQSGTLHFCG 340
Query: 840 FQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
FQVLEPQLTYSIGHTP D RIQILE WKKRLE IW+ETPLYFAPSSLFDL F+
Sbjct: 341 FQVLEPQLTYSIGHTPMDVRIQILEGWKKRLENIWNETPLYFAPSSLFDLNFQ 393
>ref|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 2
[Canis familiaris].
Length = 231
Score = 226 bits (577), Expect = 2e-59
Identities = 110/229 (48%), Positives = 148/229 (64%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ YD G + K A++S+TTGG+ MYS G+ GD LW +Q G LHFC
Sbjct: 121 LCQGFAFDIPGFYDSGFLKGKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ++++ E+ R ++ W +RL IW+E P+ +P F
Sbjct: 181 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 229
>ref|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 3
[Canis familiaris].
Length = 193
Score = 164 bits (416), Expect = 1e-40
Identities = 90/229 (39%), Positives = 124/229 (54%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQ
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQ------------------- 101
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
K A++S+TTGG+ MYS G+ GD LW +Q G LHFC
Sbjct: 102 -------------------GKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 142
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ++++ E+ R ++ W +RL IW+E P+ +P F
Sbjct: 143 GFKVLAPQISFAPEIASEEERKAMVTSWAQRLRTIWEEEPIDCSPPWYF 191
>ref|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 4
[Canis familiaris].
Length = 146
Score = 144 bits (364), Expect = 1e-34
Identities = 72/136 (52%), Positives = 91/136 (66%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AV+ L R+G + VSDLYAM+F P +RKD+ G L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y E A+K+ L+ DI EQKKV+ ADLVIFQFPL WF +PAILKGW +RV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKG 704
L FA+ YD G
Sbjct: 121 LCQGFAFDIPGFYDSG 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,123,854
Number of extensions: 1438166
Number of successful extensions: 9943
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 9503
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 235
Effective length of database: 15,440,896
Effective search space: 3628610560
Effective search space used: 3628610560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Ho... 433 e-121
Alignment gi|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b ... 351 7e-97
Alignment gi|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c ... 334 9e-92
Alignment gi|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quino... 234 1e-61
>ref|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Homo sapiens].
Length = 274
Score = 433 bits (1114), Expect = e-121
Identities = 207/234 (88%), Positives = 219/234 (93%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
IGEFAYTYAAMYDKGPFR+KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQLTYSIGHTP DARIQILE WKKRLE IWDETPLYFAPSSLFDL F+
Sbjct: 181 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQ 234
>ref|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b [Homo sapiens].
Length = 240
Score = 351 bits (900), Expect = 7e-97
Identities = 176/234 (75%), Positives = 185/234 (79%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
IGEFAYTYAAMYDKGPFR SG LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFR----------------------------------SGILHFC 146
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQLTYSIGHTP DARIQILE WKKRLE IWDETPLYFAPSSLFDL F+
Sbjct: 147 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQ 200
>ref|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c [Homo sapiens].
Length = 236
Score = 334 bits (856), Expect = 9e-92
Identities = 170/234 (72%), Positives = 182/234 (77%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
M R+ALI+LAHSE+TSFNYAMKEAA ALK++GWEV SDLYAMNFNP+ISRKDITGKL
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KDP NFQYPAE+ LAYKEG LSPDIVAEQKK+EAADLVIFQ
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ------------------- 101
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
+KKAVLSITTGGSGSMYSLQGIHGDMN++LWPIQSG LHFC
Sbjct: 102 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 142
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQLTYSIGHTP DARIQILE WKKRLE IWDETPLYFAPSSLFDL F+
Sbjct: 143 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPLYFAPSSLFDLNFQ 196
>ref|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quinone] [Homo sapiens].
Length = 231
Score = 234 bits (596), Expect = 1e-61
Identities = 115/221 (52%), Positives = 146/221 (66%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K AV+ L R+G V VSDLYAMN P + KDITG L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y ET AYK+ L+ DI EQKKV ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ YD G + K A+LS+TTGG+ MY+ G++GD LWP+Q GTLHFC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPL 959
GF+VL PQ++++ E+ R ++ W +RL+ IW E P+
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,136,664
Number of extensions: 1394135
Number of successful extensions: 8943
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8476
Number of HSP's successfully gapped: 6
Length of query: 338
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 235
Effective length of database: 14,901,872
Effective search space: 3501939920
Effective search space used: 3501939920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus]. 417 e-117
Alignment gi|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [qu... 239 3e-63
Alignment gi|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [qu... 239 3e-63
Alignment gi|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quino... 239 3e-63
Alignment gi|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [qu... 196 3e-50
>ref|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus].
Length = 274
Score = 417 bits (1071), Expect = e-117
Identities = 197/234 (84%), Positives = 216/234 (92%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA R+ALI+LAHSEKTSFNYAMKEAAVEALK+RGWEV SDLYAMNFNP+ISR DITG+L
Sbjct: 1 MAARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGEL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KD NFQYP+E++LAYKEGRLSPDIVAE KK+EAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L+ FAYTYAAMYD GPF+NKK +LSITTGGSGSMYSLQG+HGDMN++LWPIQSG L FC
Sbjct: 121 LVAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQL YSIGHTP DAR+QILE WKKRLE +W+ETPLYFAPSSLFDL F+
Sbjct: 181 GFQVLEPQLVYSIGHTPPDARMQILEGWKKRLETVWEETPLYFAPSSLFDLNFQ 234
>ref|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (609), Expect = 3e-63
Identities = 116/229 (50%), Positives = 151/229 (65%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ+++ + + E+ R +L W +RL+ IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (609), Expect = 3e-63
Identities = 116/229 (50%), Positives = 151/229 (65%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ+++ + + E+ R +L W +RL+ IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 239 bits (609), Expect = 3e-63
Identities = 116/229 (50%), Positives = 151/229 (65%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MA +K LI+ AH E SFN ++K+ AVE L ++G V VSDLY+MNF P +R DITG
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
+P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
L FA+ YD G + K A+LS+TTGG+ MY+ G+ GD LWP+Q GTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLF 983
GF+VL PQ+++ + + E+ R +L W +RL+ IW E P++ P F
Sbjct: 181 GFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCTPPWYF 229
>ref|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 2 [Mus
musculus].
Length = 187
Score = 196 bits (497), Expect = 3e-50
Identities = 93/185 (50%), Positives = 120/185 (64%)
Frame = +3
Query: 429 MNFNPVISRKDITGKLKDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPL 608
MNF P +R DITG +P F Y ET AYK+ L+ DI EQ+KV+ ADLVIFQFPL
Sbjct: 1 MNFEPRATRNDITGAPSNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPL 60
Query: 609 QWFGVPAILKGWFERVLIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGD 788
WF VPAILKGW +RVL FA+ YD G + K A+LS+TTGG+ MY+ G+ GD
Sbjct: 61 YWFSVPAILKGWMDRVLCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGD 120
Query: 789 MNILLWPIQSGTLHFCGFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFA 968
LWP+Q GTLHFCGF+VL PQ+++ + + E+ R +L W +RL+ IW E P++
Sbjct: 121 FRYFLWPLQHGTLHFCGFKVLAPQISFGLDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 180
Query: 969 PSSLF 983
P F
Sbjct: 181 PPWYF 185
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,064,488
Number of extensions: 1156701
Number of successful extensions: 7025
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6660
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 236
Effective length of database: 12,553,887
Effective search space: 2962717332
Effective search space used: 2962717332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrof... 471 e-133
>ref|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrofa].
Length = 274
Score = 471 bits (1212), Expect = e-133
Identities = 231/234 (98%), Positives = 232/234 (99%)
Frame = +3
Query: 297 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 476
MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL
Sbjct: 1 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 60
Query: 477 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 656
KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV
Sbjct: 61 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 657 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 836
LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC
Sbjct: 121 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 180
Query: 837 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLEKIWDETPLYFAPSSLFDLTFR 998
GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLE IWDETPLYFAPSSLFDL F+
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARIQILEEWKKRLENIWDETPLYFAPSSLFDLNFQ 234
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,588,287
Number of extensions: 902394
Number of successful extensions: 6563
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6034
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 238
Effective length of database: 8,854,232
Effective search space: 2107307216
Effective search space used: 2107307216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002818
(1016 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 593 e-167
>Sscrofa_Chr06
|| Length = 157765593
Score = 593 bits (299), Expect = e-167
Identities = 302/303 (99%)
Strand = Plus / Plus
Query: 1 gaggcccctctcattctctgccccctgggcacccttctcgcacgcgggtccctaaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16238809 gaggcccctctcattctctgccccctgggcacccttctcgcacgcgggtccctaaatttg 16238868
Query: 61 ccagctgccgaggtgagccccgccctgcaccccagggcccatggggcggctccgcctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16238869 ccagctgccgaggtgagccccgccctgcaccccagggcccatggggcggctccgcctttg 16238928
Query: 121 ctggtcccccagtctgtgggccgggccagatcgtgtataaagtagccgggcgctccgccg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16238929 ctggtcccccagtctgtgggccgggccagatcgtgtataaagtagccgggcgctccgcgg 16238988
Query: 181 gcagcacgagtgacacctcccaggtcgcagccagaggacctacagccccccgcgccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16238989 gcagcacgagtgacacctcccaggtcgcagccagaggacctacagccccccgcgccttcc 16239048
Query: 241 cagcttgagtcggcccggcaaccagcagcccggccaatctgcgcgccgccggagccatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16239049 cagcttgagtcggcccggcaaccagcagcccggccaatctgcgcgccgccggagccatgg 16239108
Query: 301 cgg 303
|||
Sbjct: 16239109 cgg 16239111
Score = 359 bits (181), Expect = 2e-96
Identities = 200/205 (97%), Gaps = 1/205 (0%)
Strand = Plus / Plus
Query: 813 cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16247886 cagagtggcactttgcatttctgtggcttccaagtcttggaacctcagctgacgtacagc 16247945
Query: 873 attgggcacactccagaggatgcccgaatccagatcctggaagagtggaaaaaacgcctg 932
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 16247946 attgggcacactccagaggatgcccgaatccagatcctggaagagtggaagaaacgcctg 16248005
Query: 933 gaaaaaatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaacc 992
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 16248006 gagaatatttgggatgagacgccactgtactttgcgccaagtagcctctttgacctaaac 16248065
Query: 993 tt-caggcaggattcttaatgaaaa 1016
|| ||||||||||||||||||||||
Sbjct: 16248066 ttccaggcaggattcttaatgaaaa 16248090
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 303 gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241854 gtcagaaaagcactgatcatactggcccactccgagaagacgtccttcaattatgccatg 16241913
Query: 363 aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241914 aaggaggccgccgtggaggctttgaagaggagaggatgggaggtcgccgtgtcggacctg 16241973
Query: 423 tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 470
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16241974 tatgccatgaacttcaatcccgtcatctccagaaaggacatcacaggt 16242021
Score = 258 bits (130), Expect = 5e-66
Identities = 133/134 (99%)
Strand = Plus / Plus
Query: 466 caggtaaactgaaggaccccgggaactttcagtatcctgccgagactgctctggcttata 525
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242107 caggtaaactgaaggatcccgggaactttcagtatcctgccgagactgctctggcttata 16242166
Query: 526 aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16242167 aagaaggccgtctgagcccagatattgtggccgaacaaaagaaggtggaagccgcagacc 16242226
Query: 586 ttgtgatttttcag 599
||||||||||||||
Sbjct: 16242227 ttgtgatttttcag 16242240
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 597 cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245236 cagttcccactgcagtggtttggagtccctgctattctgaaaggctggtttgaacgagtg 16245295
Query: 657 ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16245296 ctcataggggagtttgcttacacatacgctgccatgtatgacaagggacctttccgg 16245352
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 713 gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246421 gaataagaaagcagtgctttccatcaccactggcggcagtggctccatgtactctctgca 16246480
Query: 773 gggtatccacggggacatgaatatcctcctctggccaattcag 815
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16246481 gggtatccacggggacatgaatatcctcctctggccaattcag 16246523
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,932,430
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 6
Length of query: 1016
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 995
Effective length of database: 2,808,413,156
Effective search space: 2794371090220
Effective search space used: 2794371090220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)