Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685798.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 438 e-123
Alignment gi|XP_001788942.2| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 438 e-123
Alignment gi|NP_776699.1| dnaJ homolog subfamily C member 14 [Bos taurus]. 59 5e-09
Alignment gi|NP_001179744.1| translocation protein SEC63 homolog [Bos tau... 58 2e-08
Alignment gi|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member... 58 2e-08
Alignment gi|XP_002690170.1| PREDICTED: SEC63 homolog (S. cerevisiae) [Bo... 58 2e-08
Alignment gi|XP_596872.2| PREDICTED: DnaJ homolog, subfamily B, member 8-... 58 2e-08
Alignment gi|NP_001039741.1| dnaJ homolog subfamily C member 17 [Bos taur... 52 8e-07
Alignment gi|NP_001179147.1| dnaJ homolog subfamily C member 21 [Bos taur... 52 1e-06
Alignment gi|XP_002696428.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C... 52 1e-06
>ref|XP_002685798.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 8-like [Bos
taurus].
Length = 286
Score = 438 bits (1127), Expect = e-123
Identities = 222/234 (94%), Positives = 222/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 53 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 112
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 113 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 172
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 173 QLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 232
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 233 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 286
>ref|XP_001788942.2| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 8-like [Bos
taurus].
Length = 286
Score = 438 bits (1127), Expect = e-123
Identities = 222/234 (94%), Positives = 222/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 53 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 112
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 113 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 172
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 173 QLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 232
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 233 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 286
>ref|NP_776699.1| dnaJ homolog subfamily C member 14 [Bos taurus].
Length = 699
Score = 59.3 bits (142), Expect = 5e-09
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 180 LTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDK 359
LT G LNPF VL ++ +D E+KK +RQL+++VHPDKN RA++AF+ +
Sbjct: 433 LTMAGVPEDELNPFHVLGVEATASDVELKKAYRQLAVMVHPDKNHH--PRAEEAFKVLRA 490
Query: 360 AYKLLLDQEQKK 395
A+ ++ + E++K
Sbjct: 491 AWDIVSNPERRK 502
>ref|NP_001179744.1| translocation protein SEC63 homolog [Bos taurus].
Length = 760
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 92 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 146
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 147 KAYAALTDEESRK 159
>ref|XP_002697194.1| PREDICTED: DnaJ homolog, subfamily B, member 8-like [Bos taurus].
Length = 231
Score = 57.8 bits (138), Expect = 2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D K
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSD--SK 60
Query: 393 KRAL 404
KR+L
Sbjct: 61 KRSL 64
>ref|XP_002690170.1| PREDICTED: SEC63 homolog (S. cerevisiae) [Bos taurus].
Length = 760
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 92 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 146
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 147 KAYAALTDEESRK 159
>ref|XP_596872.2| PREDICTED: DnaJ homolog, subfamily B, member 8-like [Bos taurus].
Length = 231
Score = 57.8 bits (138), Expect = 2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D K
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSD--SK 60
Query: 393 KRAL 404
KR+L
Sbjct: 61 KRSL 64
>ref|NP_001039741.1| dnaJ homolog subfamily C member 17 [Bos taurus].
Length = 304
Score = 52.0 bits (123), Expect = 8e-07
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 1/182 (0%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+ +L I+ + D+E+KK +RQ ++ HPDKN D+ RA + F + +A ++L D +
Sbjct: 13 YALLGIEEKAEDKEVKKAYRQKALSCHPDKNPDN-PRAAELFHQLSQALEVLTDAAARAA 71
Query: 399 ALDVIQAGKEYVEHTVXXXXXXXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKR- 575
V +A K+ E T E L + + E EI+R
Sbjct: 72 YDKVRKAKKQAAERTQKLDERRKKVKLDLEARERQAQALGSEEEEESGSARTLEQEIERL 131
Query: 576 KEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKK 755
+E ++++ E++R E+I QE+ +R KN E ++ + K KKE +
Sbjct: 132 REEGSRQLEEQQRLIREQIR-QEQEQRLTGMAKNPENKETPKL------KLKWKSKKEAE 184
Query: 756 NR 761
++
Sbjct: 185 SQ 186
>ref|NP_001179147.1| dnaJ homolog subfamily C member 21 [Bos taurus].
Length = 533
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 52/242 (21%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLL-------- 374
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAW 64
Query: 375 ------------LDQEQKKRALDVIQ----------AGKEYVEHTVXXXXXXXXXXXXPT 488
LD E + +LD++ E +TV
Sbjct: 65 YDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELE 124
Query: 489 NVEEDDPELF-----KQAVYKQ-------------TMKLFAELEIKRKEREAKEMHERKR 614
+ E+D E F Q+ Y T K FA E + R+A E++
Sbjct: 125 SALEEDMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKE-EYDTRQASNRWEKRA 183
Query: 615 QREEEIEAQEKAKREREWQKN----FEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPK 782
+E + ++KA++E+ F RD RV + R +K +K R K
Sbjct: 184 MEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKARKAEAMRRQQK 243
Query: 783 VK 788
+K
Sbjct: 244 LK 245
>ref|XP_002696428.1| PREDICTED: DnaJ (Hsp40) homolog, subfamily C, member 21 [Bos
taurus].
Length = 533
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 52/242 (21%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLL-------- 374
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAW 64
Query: 375 ------------LDQEQKKRALDVIQ----------AGKEYVEHTVXXXXXXXXXXXXPT 488
LD E + +LD++ E +TV
Sbjct: 65 YDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELE 124
Query: 489 NVEEDDPELF-----KQAVYKQ-------------TMKLFAELEIKRKEREAKEMHERKR 614
+ E+D E F Q+ Y T K FA E + R+A E++
Sbjct: 125 SALEEDMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKNFAWKE-EYDTRQASNRWEKRA 183
Query: 615 QREEEIEAQEKAKREREWQKN----FEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPK 782
+E + ++KA++E+ F RD RV + R +K +K R K
Sbjct: 184 MEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKARKAEAMRRQQK 243
Query: 783 VK 788
+K
Sbjct: 244 LK 245
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,935,668
Number of extensions: 822073
Number of successful extensions: 5914
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 4998
Number of HSP's successfully gapped: 23
Length of query: 341
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,273,310
Effective search space: 3397047780
Effective search space used: 3397047780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535340.2| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 438 e-123
Alignment gi|XP_531625.2| PREDICTED: similar to dopamine receptor interac... 59 6e-09
Alignment gi|XP_532252.2| PREDICTED: similar to Translocation protein SEC... 58 2e-08
Alignment gi|XP_851811.1| PREDICTED: similar to DnaJ homolog, subfamily B... 56 5e-08
Alignment gi|XP_545895.2| PREDICTED: similar to DnaJ homolog subfamily A ... 52 9e-07
Alignment gi|XP_536503.2| PREDICTED: similar to DnaJ homology subfamily A... 52 1e-06
Alignment gi|XP_868147.1| PREDICTED: similar to DnaJ homology subfamily A... 52 1e-06
Alignment gi|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 51 2e-06
Alignment gi|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 51 2e-06
Alignment gi|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, sub... 51 2e-06
>ref|XP_535340.2| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily C, member 8
[Canis familiaris].
Length = 273
Score = 438 bits (1127), Expect = e-123
Identities = 222/234 (94%), Positives = 222/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 40 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 99
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 100 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 159
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 160 QLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 219
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 220 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 273
>ref|XP_531625.2| PREDICTED: similar to dopamine receptor interacting protein [Canis
familiaris].
Length = 776
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 180 LTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDK 359
LT G LNPF VL ++ +D E+KK +RQL+++VHPDKN RA++AF+ +
Sbjct: 315 LTMAGVPEDELNPFHVLGVEATASDVELKKAYRQLAVMVHPDKNHH--PRAEEAFKVLRA 372
Query: 360 AYKLLLDQEQKK 395
A+ ++ + E++K
Sbjct: 373 AWDIVSNPERRK 384
>ref|XP_532252.2| PREDICTED: similar to Translocation protein SEC63 homolog [Canis
familiaris].
Length = 850
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 182 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 236
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 237 KAYAALTDEESRK 249
>ref|XP_851811.1| PREDICTED: similar to DnaJ homolog, subfamily B, member 8 [Canis
familiaris].
Length = 233
Score = 56.2 bits (134), Expect = 5e-08
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D +++
Sbjct: 3 NYYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKQFKQVSEAYEVLSDTKRR 62
>ref|XP_545895.2| PREDICTED: similar to DnaJ homolog subfamily A member 4 isoform 1
[Canis familiaris].
Length = 400
Score = 52.0 bits (123), Expect = 9e-07
Identities = 23/70 (32%), Positives = 46/70 (65%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+++L + P + EEIKK +R+L++ HPDKN D+ ++ ++ F+ + +AY++L D +++
Sbjct: 8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEK-REVFKLISQAYEVLSDPKKR-- 64
Query: 399 ALDVIQAGKE 428
D+ G E
Sbjct: 65 --DIYDQGGE 72
>ref|XP_536503.2| PREDICTED: similar to DnaJ homology subfamily A member 5 isoform 2
isoform 1 [Canis familiaris].
Length = 531
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 52/242 (21%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLL-------- 374
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAW 64
Query: 375 ------------LDQEQKKRALDVIQ----------AGKEYVEHTVXXXXXXXXXXXXPT 488
LD E + +LD++ E +TV
Sbjct: 65 YDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELE 124
Query: 489 NVEEDDPELF-----KQAVYKQ-------------TMKLFAELEIKRKEREAKEMHERKR 614
+V E++ E F Q+ Y T K FA E + R+A E++
Sbjct: 125 SVLEEEMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKSFAWKE-EYDTRQASNRWEKRA 183
Query: 615 QREEEIEAQEKAKREREWQKN----FEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPK 782
+E + ++KA++E+ F RD RV + R +K +K R K
Sbjct: 184 MEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKARKAEEMRRQQK 243
Query: 783 VK 788
+K
Sbjct: 244 LK 245
>ref|XP_868147.1| PREDICTED: similar to DnaJ homology subfamily A member 5 isoform 1
isoform 2 [Canis familiaris].
Length = 574
Score = 51.6 bits (122), Expect = 1e-06
Identities = 57/242 (23%), Positives = 96/242 (39%), Gaps = 52/242 (21%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLL-------- 374
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAW 64
Query: 375 ------------LDQEQKKRALDVIQ----------AGKEYVEHTVXXXXXXXXXXXXPT 488
LD E + +LD++ E +TV
Sbjct: 65 YDNHREALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDEKGFYTVYRNVFEMIAKEELE 124
Query: 489 NVEEDDPELF-----KQAVYKQ-------------TMKLFAELEIKRKEREAKEMHERKR 614
+V E++ E F Q+ Y T K FA E + R+A E++
Sbjct: 125 SVLEEEMEDFPTFGDSQSDYDTVVHPFYAYWQSFCTQKSFAWKE-EYDTRQASNRWEKRA 183
Query: 615 QREEEIEAQEKAKREREWQKN----FEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPK 782
+E + ++KA++E+ F RD RV + R +K +K R K
Sbjct: 184 MEKENKKIRDKARKEKNELVRQLVAFIRKRDRRVQAHRKLVEEQNAEKARKAEEMRRQQK 243
Query: 783 VK 788
+K
Sbjct: 244 LK 245
>ref|XP_861662.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform b isoform 3 [Canis familiaris].
Length = 241
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
>ref|XP_861635.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 2 [Canis familiaris].
Length = 328
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
>ref|XP_850522.1| PREDICTED: similar to DnaJ (Hsp40) homolog, subfamily B, member 6
isoform a isoform 1 [Canis familiaris].
Length = 336
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,486,902
Number of extensions: 857612
Number of successful extensions: 7622
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 6308
Number of HSP's successfully gapped: 35
Length of query: 341
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 238
Effective length of database: 15,440,896
Effective search space: 3674933248
Effective search space used: 3674933248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055095.2| dnaJ homolog subfamily C member 8 [Homo sapiens]. 435 e-122
Alignment gi|NP_115740.5| dnaJ homolog subfamily C member 14 [Homo sapien... 59 6e-09
Alignment gi|NP_060633.1| dnaJ homolog subfamily C member 17 [Homo sapien... 58 1e-08
Alignment gi|NP_009145.1| translocation protein SEC63 homolog [Homo sapie... 58 2e-08
Alignment gi|NP_699161.1| dnaJ homolog subfamily B member 8 [Homo sapiens]. 58 2e-08
Alignment gi|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapi... 52 1e-06
Alignment gi|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Ho... 51 2e-06
Alignment gi|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Ho... 51 2e-06
Alignment gi|NP_919259.3| dnaJ homolog subfamily C member 21 isoform 1 [H... 51 2e-06
Alignment gi|NP_001012339.2| dnaJ homolog subfamily C member 21 isoform 2... 51 2e-06
>ref|NP_055095.2| dnaJ homolog subfamily C member 8 [Homo sapiens].
Length = 253
Score = 435 bits (1118), Expect = e-122
Identities = 221/234 (94%), Positives = 221/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 20 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 79
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 80 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 139
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PT VEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 140 QLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 199
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 200 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 253
>ref|NP_115740.5| dnaJ homolog subfamily C member 14 [Homo sapiens].
Length = 702
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 180 LTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDK 359
LT G LNPF VL ++ +D E+KK +RQL+++VHPDKN RA++AF+ +
Sbjct: 432 LTMAGVPEDELNPFHVLGVEATASDVELKKAYRQLAVMVHPDKNHH--PRAEEAFKVLRA 489
Query: 360 AYKLLLDQEQKK 395
A+ ++ + E++K
Sbjct: 490 AWDIVSNAEKRK 501
>ref|NP_060633.1| dnaJ homolog subfamily C member 17 [Homo sapiens].
Length = 304
Score = 58.2 bits (139), Expect = 1e-08
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+ +L I+ + D+E+KK +RQ ++ HPDKN D+ RA + F + +A ++L D +
Sbjct: 13 YALLGIEEKAADKEVKKAYRQKALSCHPDKNPDN-PRAAELFHQLSQALEVLTDAAARAA 71
Query: 399 ALDVIQAGKEYVEHTVXXXXXXXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRK 578
V +A K+ E T Q + ++ K+ +LE + +
Sbjct: 72 YDKVRKAKKQAAERT--------------------------QKLDEKRKKVKLDLEARER 105
Query: 579 EREAKEMHERKRQR-----EEEIE-AQEKAKREREWQKNF--EESRDGRVDSWRNFQANT 734
+ +A+E E + R E+EIE +E+ R+ E Q+ E+ R R R NT
Sbjct: 106 QAQAQESEEEEESRSTRTLEQEIERLREEGSRQLEEQQRLIREQIRQERDQRLRGKAENT 165
Query: 735 KGKKEKK 755
+G+ K
Sbjct: 166 EGQGTPK 172
>ref|NP_009145.1| translocation protein SEC63 homolog [Homo sapiens].
Length = 760
Score = 57.8 bits (138), Expect = 2e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 92 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 146
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 147 KAYAALTDEESRK 159
>ref|NP_699161.1| dnaJ homolog subfamily B member 8 [Homo sapiens].
Length = 232
Score = 57.8 bits (138), Expect = 2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D K
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD--SK 60
Query: 393 KRAL 404
KR+L
Sbjct: 61 KRSL 64
>ref|NP_001001394.1| dnaJ homolog subfamily B member 3 [Homo sapiens].
Length = 145
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + + E IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKR 62
>ref|NP_490647.1| dnaJ homolog subfamily B member 6 isoform a [Homo sapiens].
Length = 326
Score = 51.2 bits (121), Expect = 2e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
>ref|NP_005485.1| dnaJ homolog subfamily B member 6 isoform b [Homo sapiens].
Length = 241
Score = 51.2 bits (121), Expect = 2e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
>ref|NP_919259.3| dnaJ homolog subfamily C member 21 isoform 1 [Homo sapiens].
Length = 576
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L D +++
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQER 62
>ref|NP_001012339.2| dnaJ homolog subfamily C member 21 isoform 2 [Homo sapiens].
Length = 531
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L D +++
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQER 62
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,837,896
Number of extensions: 840152
Number of successful extensions: 6509
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5571
Number of HSP's successfully gapped: 20
Length of query: 341
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 238
Effective length of database: 14,901,872
Effective search space: 3546645536
Effective search space used: 3546645536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_765988.2| dnaJ homolog subfamily C member 8 [Mus musculus]. 438 e-123
Alignment gi|NP_083149.3| dnaJ homolog subfamily C member 14 [Mus musculu... 59 5e-09
Alignment gi|NP_694695.3| translocation protein SEC63 homolog [Mus muscul... 58 1e-08
Alignment gi|NP_064348.1| dnaJ homolog subfamily B member 8 [Mus musculus]. 57 3e-08
Alignment gi|NP_631878.2| dnaJ homolog subfamily C member 17 [Mus musculu... 55 9e-08
Alignment gi|NP_083420.2| hypothetical protein LOC75015 [Mus musculus]. 53 3e-07
Alignment gi|NP_001177746.1| dnaJ homolog subfamily C member 1 precursor ... 51 1e-06
Alignment gi|NP_031895.1| dnaJ homolog subfamily C member 1 precursor [Mu... 51 1e-06
Alignment gi|NP_084322.2| DnaJ (Hsp40) homolog, subfamily C, member 21 [M... 51 2e-06
Alignment gi|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus muscu... 50 2e-06
>ref|NP_765988.2| dnaJ homolog subfamily C member 8 [Mus musculus].
Length = 253
Score = 438 bits (1127), Expect = e-123
Identities = 222/234 (94%), Positives = 222/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 20 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 79
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 80 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 139
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 140 QLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 199
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 200 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 253
>ref|NP_083149.3| dnaJ homolog subfamily C member 14 [Mus musculus].
Length = 703
Score = 59.3 bits (142), Expect = 5e-09
Identities = 29/72 (40%), Positives = 47/72 (65%)
Frame = +3
Query: 180 LTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDK 359
LT G LNPF VL ++ +D E+KK +RQL+++VHPDKN RA++AF+ +
Sbjct: 433 LTMAGVPEDELNPFHVLGVEATASDTELKKAYRQLAVMVHPDKNHH--PRAEEAFKILRA 490
Query: 360 AYKLLLDQEQKK 395
A+ ++ + E++K
Sbjct: 491 AWDIVSNPERRK 502
>ref|NP_694695.3| translocation protein SEC63 homolog [Mus musculus].
Length = 760
Score = 57.8 bits (138), Expect = 1e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 92 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 146
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 147 KAYAALTDEESRK 159
>ref|NP_064348.1| dnaJ homolog subfamily B member 8 [Mus musculus].
Length = 227
Score = 56.6 bits (135), Expect = 3e-08
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D +++
Sbjct: 3 NYYEVLGVQSSASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKR 62
>ref|NP_631878.2| dnaJ homolog subfamily C member 17 [Mus musculus].
Length = 303
Score = 55.1 bits (131), Expect = 9e-08
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 8/187 (4%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+ +L I+ + D+E+KK +RQ ++ HPDKN D+ RA + F + +A ++L D +
Sbjct: 13 YALLGIEEKAADKEVKKAYRQKALSCHPDKNPDN-PRAAELFHQLSQALEVLTDAAARAA 71
Query: 399 ALDVIQAGKEYVEHTVXXXXXXXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRK 578
V +A K+ E T Q + + K+ +LE + +
Sbjct: 72 YDKVRKAKKQAAERT--------------------------QRLDENRKKVKLDLEARER 105
Query: 579 EREAKEMHERKRQREEEIEAQEKAKREREWQKNFEES--------RDGRVDSWRNFQANT 734
+ +A E + R QE A+ E + EE R R R NT
Sbjct: 106 QAQAHGSEEEEESRSATTLEQEIARLREEGSRQLEEQQRLIQEQIRQDREQRLRGRTENT 165
Query: 735 KGKKEKK 755
+GK K
Sbjct: 166 EGKGTPK 172
>ref|NP_083420.2| hypothetical protein LOC75015 [Mus musculus].
Length = 234
Score = 53.1 bits (126), Expect = 3e-07
Identities = 23/62 (37%), Positives = 41/62 (66%)
Frame = +3
Query: 210 LNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQ 389
+N ++VL + + +IK+ F QL++ VHPDKN D + A++ F+ V +AY +L D ++
Sbjct: 2 VNYYKVLGVPRNASSSDIKRAFHQLALQVHPDKNPGDKEAAEEKFKQVAEAYHILSDAKK 61
Query: 390 KK 395
+K
Sbjct: 62 RK 63
>ref|NP_001177746.1| dnaJ homolog subfamily C member 1 precursor [Mus musculus].
Length = 552
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/71 (35%), Positives = 45/71 (63%)
Frame = +3
Query: 210 LNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQ 389
LN +E L + + + +I+K +R+LS+ +HPDKN+D + A+ F + Y++L D E+
Sbjct: 60 LNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD--ENAETQFRQLVAIYEVLKDDER 117
Query: 390 KKRALDVIQAG 422
++R DV+ G
Sbjct: 118 RQRYDDVLING 128
>ref|NP_031895.1| dnaJ homolog subfamily C member 1 precursor [Mus musculus].
Length = 552
Score = 51.2 bits (121), Expect = 1e-06
Identities = 25/71 (35%), Positives = 45/71 (63%)
Frame = +3
Query: 210 LNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQ 389
LN +E L + + + +I+K +R+LS+ +HPDKN+D + A+ F + Y++L D E+
Sbjct: 60 LNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD--ENAETQFRQLVAIYEVLKDDER 117
Query: 390 KKRALDVIQAG 422
++R DV+ G
Sbjct: 118 RQRYDDVLING 128
>ref|NP_084322.2| DnaJ (Hsp40) homolog, subfamily C, member 21 [Mus musculus].
Length = 531
Score = 50.8 bits (120), Expect = 2e-06
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L D +++
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALRWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQER 62
>ref|NP_001158144.1| dnaJ homolog subfamily A member 1 [Mus musculus].
Length = 397
Score = 50.4 bits (119), Expect = 2e-06
Identities = 20/59 (33%), Positives = 41/59 (69%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKK 395
++VL + P T EE+KK +R+L++ HPDKN ++ ++ F+ + +AY++L D ++++
Sbjct: 8 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEK----FKQISQAYEVLADSKKRE 62
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,697,667
Number of extensions: 719328
Number of successful extensions: 5807
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 5026
Number of HSP's successfully gapped: 27
Length of query: 341
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 239
Effective length of database: 12,553,887
Effective search space: 3000378993
Effective search space used: 3000378993
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356287.1| PREDICTED: dnaJ homolog subfamily C member 8... 438 e-123
Alignment gi|XP_003127830.2| PREDICTED: hypothetical protein LOC100523796... 357 5e-99
Alignment gi|NP_001171995.1| dnaJ homolog subfamily C member 14 [Sus scro... 60 3e-09
Alignment gi|XP_001925514.3| PREDICTED: translocation protein SEC63 homol... 58 1e-08
Alignment gi|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8... 57 2e-08
Alignment gi|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2... 51 9e-07
Alignment gi|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6... 51 1e-06
Alignment gi|XP_003133928.1| PREDICTED: dnaJ homolog subfamily C member 2... 51 1e-06
Alignment gi|XP_001926476.1| PREDICTED: dnaJ homolog subfamily B member 1... 50 2e-06
Alignment gi|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa]. 50 2e-06
>ref|XP_003356287.1| PREDICTED: dnaJ homolog subfamily C member 8-like [Sus scrofa].
Length = 253
Score = 438 bits (1127), Expect = e-123
Identities = 222/234 (94%), Positives = 222/234 (94%)
Frame = +3
Query: 102 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 281
FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ
Sbjct: 20 FMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQ 79
Query: 282 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVXXXXX 461
LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTV
Sbjct: 80 LSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKK 139
Query: 462 XXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 641
PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ
Sbjct: 140 QLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQ 199
Query: 642 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 803
EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
Sbjct: 200 EKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE 253
>ref|XP_003127830.2| PREDICTED: hypothetical protein LOC100523796 [Sus scrofa].
Length = 400
Score = 357 bits (917), Expect = 5e-99
Identities = 181/193 (93%), Positives = 181/193 (93%)
Frame = +3
Query: 225 VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRAL 404
VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRAL
Sbjct: 208 VLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRAL 267
Query: 405 DVIQAGKEYVEHTVXXXXXXXXXXXXPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKER 584
DVIQAGKEYVEHTV PTNVEEDDPELFKQAVYKQTMKLFAELEIKRKER
Sbjct: 268 DVIQAGKEYVEHTVKERKKQLKKEGKPTNVEEDDPELFKQAVYKQTMKLFAELEIKRKER 327
Query: 585 EAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRT 764
EAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRT
Sbjct: 328 EAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRT 387
Query: 765 FLRPPKVKMEQRE 803
FLRPPKVKMEQRE
Sbjct: 388 FLRPPKVKMEQRE 400
>ref|NP_001171995.1| dnaJ homolog subfamily C member 14 [Sus scrofa].
Length = 704
Score = 59.7 bits (143), Expect = 3e-09
Identities = 29/72 (40%), Positives = 48/72 (66%)
Frame = +3
Query: 180 LTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDK 359
LT G LNPF VL ++ +D E+KK +RQL+++VHPDKN+ RA++AF+ +
Sbjct: 434 LTMAGVPEDELNPFHVLGVEATASDVELKKAYRQLAVMVHPDKNRH--PRAEEAFKVLRA 491
Query: 360 AYKLLLDQEQKK 395
A+ ++ + E++K
Sbjct: 492 AWDIVSNPERRK 503
>ref|XP_001925514.3| PREDICTED: translocation protein SEC63 homolog, partial [Sus
scrofa].
Length = 681
Score = 57.8 bits (138), Expect = 1e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +3
Query: 177 RLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVD 356
++++ Y NP+EVL +DP T EIKK++R LS+ HPDK D+ F +
Sbjct: 92 KVSKTDREYQEYNPYEVLNLDPGATVAEIKKQYRLLSLKYHPDKGGDEV-----MFMRIA 146
Query: 357 KAYKLLLDQEQKK 395
KAY L D+E +K
Sbjct: 147 KAYAALTDEESRK 159
>ref|XP_003132456.1| PREDICTED: dnaJ homolog subfamily B member 8-like [Sus scrofa].
Length = 231
Score = 56.6 bits (135), Expect = 2e-08
Identities = 24/60 (40%), Positives = 42/60 (70%)
Frame = +3
Query: 213 NPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
N +EVL + + E+IKK +R+L++ HPDKN D+ + A+K F+ V +AY++L D +++
Sbjct: 3 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKQVSEAYEVLSDSKKR 62
>ref|XP_003133716.2| PREDICTED: dnaJ homolog subfamily B member 2-like [Sus scrofa].
Length = 278
Score = 51.2 bits (121), Expect = 9e-07
Identities = 21/59 (35%), Positives = 41/59 (69%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKK 395
+E+L + T ++IKK +R+ ++ HPDKN D+ + A+K F+ V +AY++L D+ +++
Sbjct: 5 YEILDVPRSATADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63
>ref|XP_003134565.2| PREDICTED: dnaJ homolog subfamily B member 6-like [Sus scrofa].
Length = 104
Score = 50.8 bits (120), Expect = 1e-06
Identities = 21/58 (36%), Positives = 41/58 (70%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+EVL + + E+IKK +R+L++ HPDKN ++ + A++ F+ V +AY++L D +++
Sbjct: 5 YEVLGVQRHASAEDIKKAYRKLALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKR 62
>ref|XP_003133928.1| PREDICTED: dnaJ homolog subfamily C member 21 [Sus scrofa].
Length = 532
Score = 50.8 bits (120), Expect = 1e-06
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQK 392
+E L + + ++EE+KK +R+L++ HPDKN D+A A + F+ + AY +L D +++
Sbjct: 5 YEALGVRRDASEEELKKAYRKLALKWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQER 62
>ref|XP_001926476.1| PREDICTED: dnaJ homolog subfamily B member 11 [Sus scrofa].
Length = 358
Score = 50.4 bits (119), Expect = 2e-06
Identities = 22/60 (36%), Positives = 43/60 (71%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+++L + + ++IKK +R+L++ +HPD+N DD RAQ+ F+ + AY++L D E++K+
Sbjct: 27 YKILGVPRSASIKDIKKAYRKLALQLHPDRNPDD-PRAQEKFQDLGAAYEVLSDSEKRKQ 85
>ref|NP_999504.1| dnaJ homolog subfamily A member 4 [Sus scrofa].
Length = 397
Score = 50.1 bits (118), Expect = 2e-06
Identities = 23/70 (32%), Positives = 44/70 (62%)
Frame = +3
Query: 219 FEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKR 398
+++L + P + EEIKK +R+L++ HPDKN D+ ++ F+ + +AY++L D +++
Sbjct: 8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEK----FKLISQAYEVLSDPKKR-- 61
Query: 399 ALDVIQAGKE 428
D+ G E
Sbjct: 62 --DIYDQGGE 69
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,813,791
Number of extensions: 528168
Number of successful extensions: 3663
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3201
Number of HSP's successfully gapped: 16
Length of query: 341
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 241
Effective length of database: 8,854,232
Effective search space: 2133869912
Effective search space used: 2133869912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002820
(1025 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 593 e-167
Sscrofa_Chr08 101 7e-19
Sscrofa_Chr05 98 1e-17
>Sscrofa_Chr06
|| Length = 157765593
Score = 593 bits (299), Expect = e-167
Identities = 305/307 (99%)
Strand = Plus / Minus
Query: 682 aggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagctaataccaagggga 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84812622 aggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagctaataccaagggga 84812563
Query: 742 agaaagagaagaagaaccggaccttcctgagaccaccaaaagtaaaaatggaacagcgtg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84812562 agaaagagaagaagaaccggaccttcctgagaccaccaaaagtaaaaatggaacagcgtg 84812503
Query: 802 agtgacctgaggtcactgccacagaaccttccttcggctctccccttcctgctctgaagg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84812502 agtgacctgaggtcactgccacagaaccttccttcggctctccccttcctgctctgaagg 84812443
Query: 862 actcattctttttcccattttcaccccaacatagagtagtctttgctttttagtccattt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84812442 actcattctttttcccattttcaccccaacatagagtagtctttgctttttagtccattt 84812383
Query: 922 tgtttttcatacaatttaatatcgatcagagtaattcttttgtacattgaaatgaggggc 981
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84812382 tgttttcaatacaatttaatatcgatcagagtaattcttttgtacattgaaatgaggggc 84812323
Query: 982 tcggttt 988
|||||||
Sbjct: 84812322 tcggttt 84812316
Score = 585 bits (295), Expect = e-164
Identities = 304/307 (99%)
Strand = Plus / Minus
Query: 682 aggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagctaataccaagggga 741
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 79017562 aggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagctaacaccaagggga 79017503
Query: 742 agaaagagaagaagaaccggaccttcctgagaccaccaaaagtaaaaatggaacagcgtg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79017502 agaaagagaagaagaaccggaccttcctgagaccaccaaaagtaaaaatggaacagcgtg 79017443
Query: 802 agtgacctgaggtcactgccacagaaccttccttcggctctccccttcctgctctgaagg 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79017442 agtgacctgaggtcactgccacagaaccttccttcggctctccccttcctgctctgaagg 79017383
Query: 862 actcattctttttcccattttcaccccaacatagagtagtctttgctttttagtccattt 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79017382 actcattctttttcccattttcaccccaacatagagtagtctttgctttttagtccattt 79017323
Query: 922 tgtttttcatacaatttaatatcgatcagagtaattcttttgtacattgaaatgaggggc 981
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79017322 tgttttcaatacaatttaatatcgatcagagtaattcttttgtacattgaaatgaggggc 79017263
Query: 982 tcggttt 988
|||||||
Sbjct: 79017262 tcggttt 79017256
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 5 gcctgcgcagaagagtcacgtggtggctgggccgggggaaatggcggctccaggggagag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79043788 gcctgcgcagaagagtcacgtggtggctgggccgggggaaatggcggctccaggggagag 79043729
Query: 65 tggggcttcgggtggcggaggcagcacagaggaagcttttatgaccttctacagcgaggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79043728 tggggcttcgggtggcggaggcagcacagaggaagcttttatgaccttctacagcgaggt 79043669
Query: 125 ga 126
||
Sbjct: 79043668 ga 79043667
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 121 aggtgaaacaaatagagaagagagattcggttctaacgtctaaaaatcagattgaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79041137 aggtgaaacaaatagagaagagagattcggttctaacgtctaaaaatcagattgaaagat 79041078
Query: 181 tgactcgtcctggttcctcctacttcaacttgaacccatttgaggt 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79041077 tgactcgtcctggttcctcctacttcaacttgaacccatttgaggt 79041032
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 347 agctgtggacaaagcttacaagttgctactggatcaggaacaaaagaagagggccctgga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79026290 agctgtggacaaagcttacaagttgctactggatcaggaacaaaagaagagggccctgga 79026231
Query: 407 tgtaattcaggcaggaaaagaatacgtggaacacaccgt 445
|||||||||||||||||||||||||||||||||||||||
Sbjct: 79026230 tgtaattcaggcaggaaaagaatacgtggaacacaccgt 79026192
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 347 agctgtggacaaagcttacaagttgctactggatcaggaacaaaagaagagggccctgga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84821346 agctgtggacaaagcttacaagttgctactggatcaggaacaaaagaagagggccctgga 84821287
Query: 407 tgtaattcaggcaggaaaagaatacgtggaacacaccgt 445
|||||||||||||||||||||||||||||||||||||||
Sbjct: 84821286 tgtaattcaggcaggaaaagaatacgtggaacacaccgt 84821248
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 444 gtgaaagagcgaaaaaagcaattaaagaaggaaggaaagcctacaaatgtggaggaagat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79024383 gtgaaagagcgaaaaaagcaattaaagaaggaaggaaagcctacaaatgtggaggaagat 79024324
Query: 504 gatcctgagctg 515
||||||||||||
Sbjct: 79024323 gatcctgagctg 79024312
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Minus
Query: 444 gtgaaagagcgaaaaaagcaattaaagaaggaaggaaagcctacaaatgtggaggaagat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84819439 gtgaaagagcgaaaaaagcaattaaagaaggaaggaaagcctacaaatgtggaggaagat 84819380
Query: 504 gatcctgagctg 515
||||||||||||
Sbjct: 84819379 gatcctgagctg 84819368
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 280 agctatccatactggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaagg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79026884 agctatccatactggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaagg 79026825
Query: 340 cttttgaag 348
|||||||||
Sbjct: 79026824 cttttgaag 79026816
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 280 agctatccatactggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaagg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84821940 agctatccatactggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaagg 84821881
Query: 340 cttttgaag 348
|||||||||
Sbjct: 84821880 cttttgaag 84821872
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 223 aggttcttcagatagatcctgaagtgacagatgaagaaataaaaaagaggtttcggcag 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79030580 aggttcttcagatagatcctgaagtgacagatgaagaaataaaaaagaggtttcggcag 79030522
Score = 117 bits (59), Expect = 1e-23
Identities = 59/59 (100%)
Strand = Plus / Minus
Query: 223 aggttcttcagatagatcctgaagtgacagatgaagaaataaaaaagaggtttcggcag 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84825635 aggttcttcagatagatcctgaagtgacagatgaagaaataaaaaagaggtttcggcag 84825577
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 515 gtttaaacaagcagtatacaaacagaccatgaaactctttgctgagctggaaatt 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79019906 gtttaaacaagcagtatacaaacagaccatgaaactctttgctgagctggaaatt 79019852
Score = 109 bits (55), Expect = 3e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 515 gtttaaacaagcagtatacaaacagaccatgaaactctttgctgagctggaaatt 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84814960 gtttaaacaagcagtatacaaacagaccatgaaactctttgctgagctggaaatt 84814906
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 631 ttgaagctcaagaaaaagccaaacgagaaagggagtggcagaaaaattttgagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79018660 ttgaagctcaagaaaaagccaaacgagaaagggagtggcagaaaaattttgagg 79018607
Score = 107 bits (54), Expect = 1e-20
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 631 ttgaagctcaagaaaaagccaaacgagaaagggagtggcagaaaaattttgagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84813716 ttgaagctcaagaaaaagccaaacgagaaagggagtggcagaaaaattttgagg 84813663
>Sscrofa_Chr08
|| Length = 148491826
Score = 101 bits (51), Expect = 7e-19
Identities = 96/110 (87%), Gaps = 2/110 (1%)
Strand = Plus / Minus
Query: 666 tggcagaaaaattttgaggaaagtcgagatggtcgtgtggacagctggcgaaacttccaa 725
|||||||||||||||||||| ||| |||||||| ||||||||||| || ||||| ||||
Sbjct: 78570868 tggcagaaaaattttgaggatagttgagatggttttgtggacagctagcaaaactgccaa 78570809
Query: 726 gctaataccaa--ggggaagaaagagaagaagaaccggaccttcctgaga 773
|| ||||| || ||||||||| |||||||| |||| |||||||||||||
Sbjct: 78570808 gcaaatactaaggggggaagaatgagaagaaaaaccagaccttcctgaga 78570759
>Sscrofa_Chr05
|| Length = 111506441
Score = 97.6 bits (49), Expect = 1e-17
Identities = 102/119 (85%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 308 aaatcaagatgatgctgacagagcacaaaaggcttttgaagctgtggacaaagcttacaa 367
|||| |||||||| |||||||| ||||||| |||||| |||| ||||||| ||||||
Sbjct: 67949393 aaataaagatgatactgacagaatgcaaaagggttttgagactgtagacaaagtttacaa 67949334
Query: 368 gttgct---actggatcaggaacaaaagaagagggccctggatgtaattcaggcaggaa 423
| |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 67949333 gctgctgctactggatcaggaacaaaagacaagggccctggatgtaatacaggcaggaa 67949275
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,867,418
Number of extensions: 377
Number of successful extensions: 377
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 18
Length of query: 1025
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1004
Effective length of database: 2,808,413,156
Effective search space: 2819646808624
Effective search space used: 2819646808624
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)