Animal-Genome cDNA 20110601C-002822


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029520.1| synapse-associated protein 1 [Bos taurus].        555   e-158

>ref|NP_001029520.1| synapse-associated protein 1 [Bos taurus].
          Length = 358

 Score =  555 bits (1430), Expect = e-158
 Identities = 284/358 (79%), Positives = 299/358 (83%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
            MFR LSSWFGLEQPA GGRQS+GDGQP+G APP+QRSEAVAE+ EGEPQ AG+QELLHQA
Sbjct: 1    MFRSLSSWFGLEQPAAGGRQSQGDGQPRGHAPPDQRSEAVAESVEGEPQLAGNQELLHQA 60

Query: 287  KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
            KGLGNYLFNFATAATKKITESVAETAQTIKKSVEE              F KEQKKFVEE
Sbjct: 61   KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTFIGDFHKEQKKFVEE 120

Query: 467  QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
            Q+TKKSE AVPPWVDSNDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121  QNTKKSEVAVPPWVDSNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180

Query: 647  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
            LQEDELLSRMRF LVPKLVKE+VFWRNYFYRVSLIK               GKEEK+ GR
Sbjct: 181  LQEDELLSRMRFDLVPKLVKEDVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKNHGR 240

Query: 827  EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
            ++E PLTEAVRPKTPPVVIKSQLKTQEDEEEISTSP VSEFVSDAFD+CNLDQEDLRKEM
Sbjct: 241  QNELPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPCVSEFVSDAFDSCNLDQEDLRKEM 300

Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
            EQLVLDKKE+ TV LEEDS DW                SEKRDENWDKEIE+ML+EEN
Sbjct: 301  EQLVLDKKEEGTVALEEDSVDWEKELQQELQEYEVVAESEKRDENWDKEIEEMLKEEN 358


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,164,538
Number of extensions: 1099231
Number of successful extensions: 7147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7090
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537969.2| PREDICTED: similar to SYAP1 protein [Canis fami...   555   e-158

>ref|XP_537969.2| PREDICTED: similar to SYAP1 protein [Canis familiaris].
          Length = 358

 Score =  555 bits (1431), Expect = e-158
 Identities = 286/358 (79%), Positives = 300/358 (83%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
            MFRGLSSWFGLEQPA GGR +EG GQ  G A PE+  EA+A  A+GEP+QAGDQELLHQA
Sbjct: 1    MFRGLSSWFGLEQPATGGRPAEGAGQLDGAAAPEECCEALAGEADGEPRQAGDQELLHQA 60

Query: 287  KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
            +GLGNYLF+FATAATKKITESVAETAQTIKKSVEE              FQKEQKKFVEE
Sbjct: 61   RGLGNYLFSFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTIIGDFQKEQKKFVEE 120

Query: 467  QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
            QHTKKSEAAVPPWVDSNDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121  QHTKKSEAAVPPWVDSNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180

Query: 647  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
            LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK               GKEEKSRGR
Sbjct: 181  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSRGR 240

Query: 827  EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
            E++ PLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNL+QEDLRKEM
Sbjct: 241  EEDLPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEM 300

Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
            EQLVLDKKE+ET +LEEDSADW                SEKRDENWDKEIE+MLQEEN
Sbjct: 301  EQLVLDKKEEETAILEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEEMLQEEN 358


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,172,795
Number of extensions: 1148192
Number of successful extensions: 7492
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7406
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_116185.2| synapse-associated protein 1 [Homo sapiens].         542   e-154

>ref|NP_116185.2| synapse-associated protein 1 [Homo sapiens].
          Length = 352

 Score =  542 bits (1397), Expect = e-154
 Identities = 282/358 (78%), Positives = 292/358 (81%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
            MFRGLSSW GL+QP  GG      GQP GDAPPEQ SE VAE+AE E QQAGDQELLHQA
Sbjct: 1    MFRGLSSWLGLQQPVAGG------GQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQA 54

Query: 287  KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
            K  GNYLFNFA+AATKKITESVAETAQTIKKSVEE              FQKEQKKFVEE
Sbjct: 55   KDFGNYLFNFASAATKKITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEE 114

Query: 467  QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
            QHTKKSEAAVPPWVD+NDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 115  QHTKKSEAAVPPWVDTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 174

Query: 647  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
            LQEDELLS+MRFALVPKLVKEEVFWRNYFYRVSLIK               GKEEKS GR
Sbjct: 175  LQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSNGR 234

Query: 827  EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
            E + PL EAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNL+QEDLRKEM
Sbjct: 235  EQDLPLAEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEM 294

Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
            EQLVLDKK++ET VLEEDSADW                SEKRDENWDKEIEKMLQEEN
Sbjct: 295  EQLVLDKKQEETAVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 352


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,119,140
Number of extensions: 1104608
Number of successful extensions: 6795
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6732
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080208.2| synapse-associated protein 1 [Mus musculus].         480   e-136

>ref|NP_080208.2| synapse-associated protein 1 [Mus musculus].
          Length = 365

 Score =  480 bits (1236), Expect = e-136
 Identities = 254/364 (69%), Positives = 273/364 (75%), Gaps = 8/364 (2%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSE------GDGQPKGDAPPEQRSEAVAETAEGEPQQ--AG 262
            MF GLSSW GL+ P     + E      GD    G AP E+  E   E  E + QQ    
Sbjct: 1    MFGGLSSWLGLKPPEGAAAEGEEPPSRDGDKLSAGAAPSEESPERPVEPTEEQQQQPPTE 60

Query: 263  DQELLHQAKGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQK 442
            D + LHQAKGLGNYL+NFA+AATKKITESV ETAQTIKKSVEE              FQK
Sbjct: 61   DPQFLHQAKGLGNYLYNFASAATKKITESVTETAQTIKKSVEEGKIDDILDKTILGDFQK 120

Query: 443  EQKKFVEEQHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQ 622
            EQKKFVEEQ+TKKSEAAVPPWV+S+DEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQ
Sbjct: 121  EQKKFVEEQNTKKSEAAVPPWVESHDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQ 180

Query: 623  MYPVALVMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXG 802
            MYPVALVMLQEDELLS+MRFALVPKLVKEEVFWRNYFYR+SLIK               G
Sbjct: 181  MYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQASG 240

Query: 803  KEEKSRGREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLD 982
            KEEKS  R+D  PLTEAVRPKTPPVVIKSQLK+QEDEEEISTSPGVSEFVSDAFD C+L+
Sbjct: 241  KEEKSSNRDDNLPLTEAVRPKTPPVVIKSQLKSQEDEEEISTSPGVSEFVSDAFDTCSLN 300

Query: 983  QEDLRKEMEQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEK 1162
            QEDLRKEMEQLVLDKK++E   LEEDS DW                SEKRDENWDKEIEK
Sbjct: 301  QEDLRKEMEQLVLDKKQEEATALEEDSTDWEKELQQELQEYEVVAESEKRDENWDKEIEK 360

Query: 1163 MLQE 1174
            MLQE
Sbjct: 361  MLQE 364


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,619,358
Number of extensions: 911949
Number of successful extensions: 5297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5230
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001924226.1| PREDICTED: synapse-associated protein 1 isof...   607   e-174
Alignment   gi|XP_003135002.1| PREDICTED: synapse-associated protein 1 isof...   444   e-125

>ref|XP_001924226.1| PREDICTED: synapse-associated protein 1 isoform 1 [Sus scrofa].
          Length = 358

 Score =  607 bits (1566), Expect = e-174
 Identities = 313/358 (87%), Positives = 313/358 (87%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
            MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA
Sbjct: 1    MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 60

Query: 287  KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
            KGLGNYLFNFATAATKKITESVAETAQTIKKSVEE              FQKEQKKFVEE
Sbjct: 61   KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTIIGDFQKEQKKFVEE 120

Query: 467  QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
            QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121  QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180

Query: 647  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
            LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK               GKEEKSRGR
Sbjct: 181  LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSRGR 240

Query: 827  EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
            EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM
Sbjct: 241  EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 300

Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
            EQLVLDKKEQETVVLEEDSADW                SEKRDENWDKEIEKMLQEEN
Sbjct: 301  EQLVLDKKEQETVVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 358


>ref|XP_003135002.1| PREDICTED: synapse-associated protein 1 isoform 2 [Sus scrofa].
          Length = 296

 Score =  444 bits (1143), Expect = e-125
 Identities = 247/360 (68%), Positives = 252/360 (70%), Gaps = 2/360 (0%)
 Frame = +2

Query: 107  MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
            MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRS                       
Sbjct: 1    MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRS----------------------- 37

Query: 287  KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
                               E+VAETA+                       + +Q    E 
Sbjct: 38   -------------------EAVAETAEG----------------------EPQQAGDQEL 56

Query: 467  QHTKKS--EAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL 640
             H  K   +AAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL
Sbjct: 57   LHQAKGLGKAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL 116

Query: 641  VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSR 820
            VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK               GKEEKSR
Sbjct: 117  VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSR 176

Query: 821  GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK 1000
            GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK
Sbjct: 177  GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK 236

Query: 1001 EMEQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
            EMEQLVLDKKEQETVVLEEDSADW                SEKRDENWDKEIEKMLQEEN
Sbjct: 237  EMEQLVLDKKEQETVVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 296


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,947,288
Number of extensions: 710781
Number of successful extensions: 4659
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4617
Number of HSP's successfully gapped: 3
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-002822
         (1262 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_ChrX                                                          593   e-167

>Sscrofa_ChrX 
||          Length = 144288218

 Score =  593 bits (299), Expect = e-167
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                            
Query: 1        cacttccggctatcgcccagggagacgcgccctgtgaagtcccgaccaggctccgcccgc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185764 cacttccggctatcgcccagggagacgcgccctgtgaagtcccgaccaggctccgcccgc 14185705

                                                                            
Query: 61       tagggtctcctgtgacccggaccgcattggcggccctgcgggcgggatgttccggggttt 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185704 tagggtctcctgtgacccggaccgcattggcggccctgcgggcgggatgttccggggttt 14185645

                                                                            
Query: 121      gagcagttggtttggcttggagcagccggcgccgggtggccggcagtccgagggagatgg 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185644 gagcagttggtttggcttggagcagccggcgccgggtggccggcagtccgagggagatgg 14185585

                                                                            
Query: 181      gcagcctaagggagacgctccacccgagcagcgctccgaggcggtggcagagacagcgga 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185584 gcagcctaagggagacgctccacccgagcagcgctccgaggcggtggcagagacagcgga 14185525

                                                                           
Query: 241      gggggaacctcagcaagccggggaccaggagctccttcatcaggccaaaggcctcggca 299
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185524 gggggaacctcagcaagccggggaccaggagctccttcatcaggccaaaggcctcggca 14185466



 Score =  406 bits (205), Expect = e-110
 Identities = 208/209 (99%)
 Strand = Plus / Minus

                                                                            
Query: 1054     agaggattctgcagattgggaaaaagaactacaacaggaacttcaggagtacgaggtggt 1113
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14161740 agaggattctgcagattgggaaaaagaactacaacaggaacttcaggagtacgaggtggt 14161681

                                                                            
Query: 1114     gacagaatcggagaaacgagatgaaaactgggataaggaaatagagaaaatgctgcagga 1173
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14161680 gacagaatcggagaaacgagatgaaaactgggataaggaaatagagaaaatgctgcagga 14161621

                                                                            
Query: 1174     ggaaaactagctgtctcctgaaattaaggaaaaatccttaatgctctgtaactgacatta 1233
                |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14161620 ggaaaactagctgtctcctgaaataaaggaaaaatccttaatgctctgtaactgacatta 14161561

                                             
Query: 1234     aattctaggtgtcgaccttggctgaatca 1262
                |||||||||||||||||||||||||||||
Sbjct: 14161560 aattctaggtgtcgaccttggctgaatca 14161532



 Score =  297 bits (150), Expect = 8e-78
 Identities = 150/150 (100%)
 Strand = Plus / Minus

                                                                            
Query: 906      aggatgaagaggagatttctaccagcccgggtgtttctgagtttgtcagtgacgccttcg 965
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14164040 aggatgaagaggagatttctaccagcccgggtgtttctgagtttgtcagtgacgccttcg 14163981

                                                                            
Query: 966      atgcctgtaacttagatcaggaggatctgaggaaggaaatggagcagctggtgctggaca 1025
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14163980 atgcctgtaacttagatcaggaggatctgaggaaggaaatggagcagctggtgctggaca 14163921

                                              
Query: 1026     aaaaagagcaggagacggtcgtgctagaag 1055
                ||||||||||||||||||||||||||||||
Sbjct: 14163920 aaaaagagcaggagacggtcgtgctagaag 14163891



 Score =  295 bits (149), Expect = 3e-77
 Identities = 149/149 (100%)
 Strand = Plus / Minus

                                                                            
Query: 700      tgtgaaagaagaagtgttctggaggaactacttttaccgcgtctccctgattaagcagtc 759
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166481 tgtgaaagaagaagtgttctggaggaactacttttaccgcgtctccctgattaagcagtc 14166422

                                                                            
Query: 760      ggcccagctcacggccctggcagcccagcagcaggccgccggcaaggaggagaagagccg 819
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166421 ggcccagctcacggccctggcagcccagcagcaggccgccggcaaggaggagaagagccg 14166362

                                             
Query: 820      cggcagagaggatgagtcgccgctgacag 848
                |||||||||||||||||||||||||||||
Sbjct: 14166361 cggcagagaggatgagtcgccgctgacag 14166333



 Score =  278 bits (140), Expect = 7e-72
 Identities = 140/140 (100%)
 Strand = Plus / Minus

                                                                            
Query: 560      gacaagaggaacttccttcgtgaccctccagctggcgtgcagtttaactttgactttgat 619
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14171665 gacaagaggaacttccttcgtgaccctccagctggcgtgcagtttaactttgactttgat 14171606

                                                                            
Query: 620      cagatgtatcccgttgccctggtcatgctccaagaggacgagctcctgagcaggatgaga 679
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14171605 cagatgtatcccgttgccctggtcatgctccaagaggacgagctcctgagcaggatgaga 14171546

                                    
Query: 680      tttgccctcgtcccgaaact 699
                ||||||||||||||||||||
Sbjct: 14171545 tttgccctcgtcccgaaact 14171526



 Score =  236 bits (119), Expect = 2e-59
 Identities = 119/119 (100%)
 Strand = Plus / Minus

                                                                            
Query: 300      actatctatttaactttgcaactgctgctacaaaaaagataactgaatcagttgctgaaa 359
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180333 actatctatttaactttgcaactgctgctacaaaaaagataactgaatcagttgctgaaa 14180274

                                                                           
Query: 360      cagcacaaacaataaagaaatcagtagaagaaggaaagatagatgacatcattgataag 418
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180273 cagcacaaacaataaagaaatcagtagaagaaggaaagatagatgacatcattgataag 14180215



 Score =  157 bits (79), Expect = 2e-35
 Identities = 79/79 (100%)
 Strand = Plus / Minus

                                                                            
Query: 482      tcagaagcagcagtgcccccatgggttgatagtaatgatgaagaaaccattcaacaacaa 541
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14174956 tcagaagcagcagtgcccccatgggttgatagtaatgatgaagaaaccattcaacaacaa 14174897

                                   
Query: 542      gtcttggccctgtcagctg 560
                |||||||||||||||||||
Sbjct: 14174896 gtcttggccctgtcagctg 14174878



 Score =  125 bits (63), Expect = 6e-26
 Identities = 63/63 (100%)
 Strand = Plus / Minus

                                                                            
Query: 846      cagaggcagtacggcccaaaacaccacctgtcgtaatcaaatctcagcttaaaacccaag 905
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14164474 cagaggcagtacggcccaaaacaccacctgtcgtaatcaaatctcagcttaaaacccaag 14164415

                   
Query: 906      agg 908
                |||
Sbjct: 14164414 agg 14164412



 Score =  115 bits (58), Expect = 6e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                          
Query: 417      agacaattataggagattttcagaaggaacagaaaaaatttgttgaggagcagcatac 474
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14179052 agacaattataggagattttcagaaggaacagaaaaaatttgttgaggagcagcatac 14178995


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,766,695
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 9
Length of query: 1262
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1241
Effective length of database: 2,808,413,156
Effective search space: 3485240726596
Effective search space used: 3485240726596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)