Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029520.1| synapse-associated protein 1 [Bos taurus]. 555 e-158
>ref|NP_001029520.1| synapse-associated protein 1 [Bos taurus].
Length = 358
Score = 555 bits (1430), Expect = e-158
Identities = 284/358 (79%), Positives = 299/358 (83%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
MFR LSSWFGLEQPA GGRQS+GDGQP+G APP+QRSEAVAE+ EGEPQ AG+QELLHQA
Sbjct: 1 MFRSLSSWFGLEQPAAGGRQSQGDGQPRGHAPPDQRSEAVAESVEGEPQLAGNQELLHQA 60
Query: 287 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
KGLGNYLFNFATAATKKITESVAETAQTIKKSVEE F KEQKKFVEE
Sbjct: 61 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTFIGDFHKEQKKFVEE 120
Query: 467 QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
Q+TKKSE AVPPWVDSNDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121 QNTKKSEVAVPPWVDSNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180
Query: 647 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
LQEDELLSRMRF LVPKLVKE+VFWRNYFYRVSLIK GKEEK+ GR
Sbjct: 181 LQEDELLSRMRFDLVPKLVKEDVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKNHGR 240
Query: 827 EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
++E PLTEAVRPKTPPVVIKSQLKTQEDEEEISTSP VSEFVSDAFD+CNLDQEDLRKEM
Sbjct: 241 QNELPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPCVSEFVSDAFDSCNLDQEDLRKEM 300
Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
EQLVLDKKE+ TV LEEDS DW SEKRDENWDKEIE+ML+EEN
Sbjct: 301 EQLVLDKKEEGTVALEEDSVDWEKELQQELQEYEVVAESEKRDENWDKEIEEMLKEEN 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,164,538
Number of extensions: 1099231
Number of successful extensions: 7147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7090
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,207,134
Effective search space: 4475247210
Effective search space used: 4475247210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537969.2| PREDICTED: similar to SYAP1 protein [Canis fami... 555 e-158
>ref|XP_537969.2| PREDICTED: similar to SYAP1 protein [Canis familiaris].
Length = 358
Score = 555 bits (1431), Expect = e-158
Identities = 286/358 (79%), Positives = 300/358 (83%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
MFRGLSSWFGLEQPA GGR +EG GQ G A PE+ EA+A A+GEP+QAGDQELLHQA
Sbjct: 1 MFRGLSSWFGLEQPATGGRPAEGAGQLDGAAAPEECCEALAGEADGEPRQAGDQELLHQA 60
Query: 287 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
+GLGNYLF+FATAATKKITESVAETAQTIKKSVEE FQKEQKKFVEE
Sbjct: 61 RGLGNYLFSFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTIIGDFQKEQKKFVEE 120
Query: 467 QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
QHTKKSEAAVPPWVDSNDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121 QHTKKSEAAVPPWVDSNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180
Query: 647 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK GKEEKSRGR
Sbjct: 181 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSRGR 240
Query: 827 EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
E++ PLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNL+QEDLRKEM
Sbjct: 241 EEDLPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEM 300
Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
EQLVLDKKE+ET +LEEDSADW SEKRDENWDKEIE+MLQEEN
Sbjct: 301 EQLVLDKKEEETAILEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEEMLQEEN 358
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,172,795
Number of extensions: 1148192
Number of successful extensions: 7492
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7406
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 315
Effective length of database: 15,374,224
Effective search space: 4842880560
Effective search space used: 4842880560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_116185.2| synapse-associated protein 1 [Homo sapiens]. 542 e-154
>ref|NP_116185.2| synapse-associated protein 1 [Homo sapiens].
Length = 352
Score = 542 bits (1397), Expect = e-154
Identities = 282/358 (78%), Positives = 292/358 (81%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
MFRGLSSW GL+QP GG GQP GDAPPEQ SE VAE+AE E QQAGDQELLHQA
Sbjct: 1 MFRGLSSWLGLQQPVAGG------GQPNGDAPPEQPSETVAESAEEELQQAGDQELLHQA 54
Query: 287 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
K GNYLFNFA+AATKKITESVAETAQTIKKSVEE FQKEQKKFVEE
Sbjct: 55 KDFGNYLFNFASAATKKITESVAETAQTIKKSVEEGKIDGIIDKTIIGDFQKEQKKFVEE 114
Query: 467 QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
QHTKKSEAAVPPWVD+NDEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 115 QHTKKSEAAVPPWVDTNDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 174
Query: 647 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
LQEDELLS+MRFALVPKLVKEEVFWRNYFYRVSLIK GKEEKS GR
Sbjct: 175 LQEDELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSNGR 234
Query: 827 EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
E + PL EAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNL+QEDLRKEM
Sbjct: 235 EQDLPLAEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLNQEDLRKEM 294
Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
EQLVLDKK++ET VLEEDSADW SEKRDENWDKEIEKMLQEEN
Sbjct: 295 EQLVLDKKQEETAVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 352
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,119,140
Number of extensions: 1104608
Number of successful extensions: 6795
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6732
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 315
Effective length of database: 14,835,944
Effective search space: 4673322360
Effective search space used: 4673322360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080208.2| synapse-associated protein 1 [Mus musculus]. 480 e-136
>ref|NP_080208.2| synapse-associated protein 1 [Mus musculus].
Length = 365
Score = 480 bits (1236), Expect = e-136
Identities = 254/364 (69%), Positives = 273/364 (75%), Gaps = 8/364 (2%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSE------GDGQPKGDAPPEQRSEAVAETAEGEPQQ--AG 262
MF GLSSW GL+ P + E GD G AP E+ E E E + QQ
Sbjct: 1 MFGGLSSWLGLKPPEGAAAEGEEPPSRDGDKLSAGAAPSEESPERPVEPTEEQQQQPPTE 60
Query: 263 DQELLHQAKGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQK 442
D + LHQAKGLGNYL+NFA+AATKKITESV ETAQTIKKSVEE FQK
Sbjct: 61 DPQFLHQAKGLGNYLYNFASAATKKITESVTETAQTIKKSVEEGKIDDILDKTILGDFQK 120
Query: 443 EQKKFVEEQHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQ 622
EQKKFVEEQ+TKKSEAAVPPWV+S+DEETIQQQ+LALSADKRNFLRDPPAGVQFNFDFDQ
Sbjct: 121 EQKKFVEEQNTKKSEAAVPPWVESHDEETIQQQILALSADKRNFLRDPPAGVQFNFDFDQ 180
Query: 623 MYPVALVMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXG 802
MYPVALVMLQEDELLS+MRFALVPKLVKEEVFWRNYFYR+SLIK G
Sbjct: 181 MYPVALVMLQEDELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQASG 240
Query: 803 KEEKSRGREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLD 982
KEEKS R+D PLTEAVRPKTPPVVIKSQLK+QEDEEEISTSPGVSEFVSDAFD C+L+
Sbjct: 241 KEEKSSNRDDNLPLTEAVRPKTPPVVIKSQLKSQEDEEEISTSPGVSEFVSDAFDTCSLN 300
Query: 983 QEDLRKEMEQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEK 1162
QEDLRKEMEQLVLDKK++E LEEDS DW SEKRDENWDKEIEK
Sbjct: 301 QEDLRKEMEQLVLDKKQEEATALEEDSTDWEKELQQELQEYEVVAESEKRDENWDKEIEK 360
Query: 1163 MLQE 1174
MLQE
Sbjct: 361 MLQE 364
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,619,358
Number of extensions: 911949
Number of successful extensions: 5297
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5230
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 316
Effective length of database: 12,493,815
Effective search space: 3948045540
Effective search space used: 3948045540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924226.1| PREDICTED: synapse-associated protein 1 isof... 607 e-174
Alignment gi|XP_003135002.1| PREDICTED: synapse-associated protein 1 isof... 444 e-125
>ref|XP_001924226.1| PREDICTED: synapse-associated protein 1 isoform 1 [Sus scrofa].
Length = 358
Score = 607 bits (1566), Expect = e-174
Identities = 313/358 (87%), Positives = 313/358 (87%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA
Sbjct: 1 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 60
Query: 287 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
KGLGNYLFNFATAATKKITESVAETAQTIKKSVEE FQKEQKKFVEE
Sbjct: 61 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEGKIDDIIDKTIIGDFQKEQKKFVEE 120
Query: 467 QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 646
QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM
Sbjct: 121 QHTKKSEAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVALVM 180
Query: 647 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSRGR 826
LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK GKEEKSRGR
Sbjct: 181 LQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSRGR 240
Query: 827 EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 1006
EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM
Sbjct: 241 EDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRKEM 300
Query: 1007 EQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
EQLVLDKKEQETVVLEEDSADW SEKRDENWDKEIEKMLQEEN
Sbjct: 301 EQLVLDKKEQETVVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 358
>ref|XP_003135002.1| PREDICTED: synapse-associated protein 1 isoform 2 [Sus scrofa].
Length = 296
Score = 444 bits (1143), Expect = e-125
Identities = 247/360 (68%), Positives = 252/360 (70%), Gaps = 2/360 (0%)
Frame = +2
Query: 107 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRSEAVAETAEGEPQQAGDQELLHQA 286
MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRS
Sbjct: 1 MFRGLSSWFGLEQPAPGGRQSEGDGQPKGDAPPEQRS----------------------- 37
Query: 287 KGLGNYLFNFATAATKKITESVAETAQTIKKSVEEXXXXXXXXXXXXXXFQKEQKKFVEE 466
E+VAETA+ + +Q E
Sbjct: 38 -------------------EAVAETAEG----------------------EPQQAGDQEL 56
Query: 467 QHTKKS--EAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL 640
H K +AAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL
Sbjct: 57 LHQAKGLGKAAVPPWVDSNDEETIQQQVLALSADKRNFLRDPPAGVQFNFDFDQMYPVAL 116
Query: 641 VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKXXXXXXXXXXXXXXXGKEEKSR 820
VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIK GKEEKSR
Sbjct: 117 VMLQEDELLSRMRFALVPKLVKEEVFWRNYFYRVSLIKQSAQLTALAAQQQAAGKEEKSR 176
Query: 821 GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK 1000
GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK
Sbjct: 177 GREDESPLTEAVRPKTPPVVIKSQLKTQEDEEEISTSPGVSEFVSDAFDACNLDQEDLRK 236
Query: 1001 EMEQLVLDKKEQETVVLEEDSADWXXXXXXXXXXXXXXXXSEKRDENWDKEIEKMLQEEN 1180
EMEQLVLDKKEQETVVLEEDSADW SEKRDENWDKEIEKMLQEEN
Sbjct: 237 EMEQLVLDKKEQETVVLEEDSADWEKELQQELQEYEVVTESEKRDENWDKEIEKMLQEEN 296
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,947,288
Number of extensions: 710781
Number of successful extensions: 4659
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4617
Number of HSP's successfully gapped: 3
Length of query: 420
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 318
Effective length of database: 8,804,438
Effective search space: 2799811284
Effective search space used: 2799811284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002822
(1262 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 593 e-167
>Sscrofa_ChrX
|| Length = 144288218
Score = 593 bits (299), Expect = e-167
Identities = 299/299 (100%)
Strand = Plus / Minus
Query: 1 cacttccggctatcgcccagggagacgcgccctgtgaagtcccgaccaggctccgcccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185764 cacttccggctatcgcccagggagacgcgccctgtgaagtcccgaccaggctccgcccgc 14185705
Query: 61 tagggtctcctgtgacccggaccgcattggcggccctgcgggcgggatgttccggggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185704 tagggtctcctgtgacccggaccgcattggcggccctgcgggcgggatgttccggggttt 14185645
Query: 121 gagcagttggtttggcttggagcagccggcgccgggtggccggcagtccgagggagatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185644 gagcagttggtttggcttggagcagccggcgccgggtggccggcagtccgagggagatgg 14185585
Query: 181 gcagcctaagggagacgctccacccgagcagcgctccgaggcggtggcagagacagcgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185584 gcagcctaagggagacgctccacccgagcagcgctccgaggcggtggcagagacagcgga 14185525
Query: 241 gggggaacctcagcaagccggggaccaggagctccttcatcaggccaaaggcctcggca 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14185524 gggggaacctcagcaagccggggaccaggagctccttcatcaggccaaaggcctcggca 14185466
Score = 406 bits (205), Expect = e-110
Identities = 208/209 (99%)
Strand = Plus / Minus
Query: 1054 agaggattctgcagattgggaaaaagaactacaacaggaacttcaggagtacgaggtggt 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14161740 agaggattctgcagattgggaaaaagaactacaacaggaacttcaggagtacgaggtggt 14161681
Query: 1114 gacagaatcggagaaacgagatgaaaactgggataaggaaatagagaaaatgctgcagga 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14161680 gacagaatcggagaaacgagatgaaaactgggataaggaaatagagaaaatgctgcagga 14161621
Query: 1174 ggaaaactagctgtctcctgaaattaaggaaaaatccttaatgctctgtaactgacatta 1233
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 14161620 ggaaaactagctgtctcctgaaataaaggaaaaatccttaatgctctgtaactgacatta 14161561
Query: 1234 aattctaggtgtcgaccttggctgaatca 1262
|||||||||||||||||||||||||||||
Sbjct: 14161560 aattctaggtgtcgaccttggctgaatca 14161532
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 906 aggatgaagaggagatttctaccagcccgggtgtttctgagtttgtcagtgacgccttcg 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14164040 aggatgaagaggagatttctaccagcccgggtgtttctgagtttgtcagtgacgccttcg 14163981
Query: 966 atgcctgtaacttagatcaggaggatctgaggaaggaaatggagcagctggtgctggaca 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14163980 atgcctgtaacttagatcaggaggatctgaggaaggaaatggagcagctggtgctggaca 14163921
Query: 1026 aaaaagagcaggagacggtcgtgctagaag 1055
||||||||||||||||||||||||||||||
Sbjct: 14163920 aaaaagagcaggagacggtcgtgctagaag 14163891
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 700 tgtgaaagaagaagtgttctggaggaactacttttaccgcgtctccctgattaagcagtc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166481 tgtgaaagaagaagtgttctggaggaactacttttaccgcgtctccctgattaagcagtc 14166422
Query: 760 ggcccagctcacggccctggcagcccagcagcaggccgccggcaaggaggagaagagccg 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14166421 ggcccagctcacggccctggcagcccagcagcaggccgccggcaaggaggagaagagccg 14166362
Query: 820 cggcagagaggatgagtcgccgctgacag 848
|||||||||||||||||||||||||||||
Sbjct: 14166361 cggcagagaggatgagtcgccgctgacag 14166333
Score = 278 bits (140), Expect = 7e-72
Identities = 140/140 (100%)
Strand = Plus / Minus
Query: 560 gacaagaggaacttccttcgtgaccctccagctggcgtgcagtttaactttgactttgat 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14171665 gacaagaggaacttccttcgtgaccctccagctggcgtgcagtttaactttgactttgat 14171606
Query: 620 cagatgtatcccgttgccctggtcatgctccaagaggacgagctcctgagcaggatgaga 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14171605 cagatgtatcccgttgccctggtcatgctccaagaggacgagctcctgagcaggatgaga 14171546
Query: 680 tttgccctcgtcccgaaact 699
||||||||||||||||||||
Sbjct: 14171545 tttgccctcgtcccgaaact 14171526
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 300 actatctatttaactttgcaactgctgctacaaaaaagataactgaatcagttgctgaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180333 actatctatttaactttgcaactgctgctacaaaaaagataactgaatcagttgctgaaa 14180274
Query: 360 cagcacaaacaataaagaaatcagtagaagaaggaaagatagatgacatcattgataag 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14180273 cagcacaaacaataaagaaatcagtagaagaaggaaagatagatgacatcattgataag 14180215
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 482 tcagaagcagcagtgcccccatgggttgatagtaatgatgaagaaaccattcaacaacaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14174956 tcagaagcagcagtgcccccatgggttgatagtaatgatgaagaaaccattcaacaacaa 14174897
Query: 542 gtcttggccctgtcagctg 560
|||||||||||||||||||
Sbjct: 14174896 gtcttggccctgtcagctg 14174878
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 846 cagaggcagtacggcccaaaacaccacctgtcgtaatcaaatctcagcttaaaacccaag 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14164474 cagaggcagtacggcccaaaacaccacctgtcgtaatcaaatctcagcttaaaacccaag 14164415
Query: 906 agg 908
|||
Sbjct: 14164414 agg 14164412
Score = 115 bits (58), Expect = 6e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 417 agacaattataggagattttcagaaggaacagaaaaaatttgttgaggagcagcatac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14179052 agacaattataggagattttcagaaggaacagaaaaaatttgttgaggagcagcatac 14178995
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,766,695
Number of extensions: 283
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 9
Length of query: 1262
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1241
Effective length of database: 2,808,413,156
Effective search space: 3485240726596
Effective search space used: 3485240726596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)