Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094515.1| AN1-type zinc finger protein 5 [Bos taurus]. 360 2e-99
Alignment gi|NP_001029632.1| AN1-type zinc finger protein 6 [Bos taurus]. 200 4e-51
Alignment gi|XP_002696647.1| PREDICTED: zinc finger, AN1-type domain 6-li... 89 1e-17
>ref|NP_001094515.1| AN1-type zinc finger protein 5 [Bos taurus].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 177/213 (83%), Positives = 179/213 (84%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRADASLNNCEGAAGSTSEKSRN+PVAALPVTQQMTEMSISREDK+TTPKT
Sbjct: 61 SDSASVQRADASLNNCEGAAGSTSEKSRNMPVAALPVTQQMTEMSISREDKVTTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_001029632.1| AN1-type zinc finger protein 6 [Bos taurus].
Length = 208
Score = 200 bits (508), Expect = 4e-51
Identities = 108/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S +
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAPSVTS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A ST+ + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTASSVQPSPVSNQSL---LSESVASSQVDSTSVDKAI 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSETAQQASEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_002696647.1| PREDICTED: zinc finger, AN1-type domain 6-like [Bos taurus].
Length = 62
Score = 89.4 bits (220), Expect = 1e-17
Identities = 37/48 (77%), Positives = 44/48 (91%)
Frame = +2
Query: 1055 FDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
F+CRCGN++CG+HRYSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 15 FECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 62
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 59,453,304
Number of extensions: 1489037
Number of successful extensions: 4342
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4336
Number of HSP's successfully gapped: 4
Length of query: 596
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 488
Effective length of database: 14,107,870
Effective search space: 6884640560
Effective search space used: 6884640560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533526.1| PREDICTED: similar to Zinc finger A20 domain co... 360 2e-99
Alignment gi|XP_849428.1| PREDICTED: similar to Zinc finger A20 domain co... 360 2e-99
Alignment gi|XP_858773.1| PREDICTED: similar to Zinc finger A20 domain co... 346 4e-95
Alignment gi|XP_861084.1| PREDICTED: similar to zinc finger, A20 domain c... 201 2e-51
Alignment gi|XP_861229.1| PREDICTED: similar to zinc finger, A20 domain c... 199 5e-51
Alignment gi|XP_861200.1| PREDICTED: similar to zinc finger, A20 domain c... 199 5e-51
Alignment gi|XP_861168.1| PREDICTED: similar to zinc finger, A20 domain c... 199 5e-51
Alignment gi|XP_861141.1| PREDICTED: similar to zinc finger, A20 domain c... 199 5e-51
Alignment gi|XP_536211.1| PREDICTED: similar to zinc finger, A20 domain c... 199 5e-51
Alignment gi|XP_861002.1| PREDICTED: similar to zinc finger, A20 domain c... 199 9e-51
>ref|XP_533526.1| PREDICTED: similar to Zinc finger A20 domain containing protein 2
(Zinc finger protein 216) isoform 1 [Canis familiaris].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRAD SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|XP_849428.1| PREDICTED: similar to Zinc finger A20 domain containing protein 2
(Zinc finger protein 216) isoform 2 [Canis familiaris].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRAD SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|XP_858773.1| PREDICTED: similar to Zinc finger A20 domain containing protein 2
(Zinc finger protein 216) isoform 3 [Canis familiaris].
Length = 212
Score = 346 bits (888), Expect = 4e-95
Identities = 176/214 (82%), Positives = 176/214 (82%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPM ASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPM--ASGSNSPT 58
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSR-NVPVAALPVTQQMTEMSISREDKITTPKTXX 916
SDSASVQRAD SLNNCEGAAGSTSEKSR NVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 59 SDSASVQRADTSLNNCEGAAGSTSEKSRENVPVAALPVTQQMTEMSISREDKITTPKTEV 118
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGFDCRCGNLFCGLHR
Sbjct: 119 SEPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHR 178
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 179 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 212
>ref|XP_861084.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 7
[Canis familiaris].
Length = 209
Score = 201 bits (511), Expect = 2e-51
Identities = 110/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP S S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP--PVSASVST 58
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 59 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 115
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 116 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 175
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 176 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 209
>ref|XP_861229.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 11
[Canis familiaris].
Length = 208
Score = 199 bits (507), Expect = 5e-51
Identities = 109/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVST 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861200.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 10
[Canis familiaris].
Length = 208
Score = 199 bits (507), Expect = 5e-51
Identities = 109/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVST 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861168.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 9
[Canis familiaris].
Length = 208
Score = 199 bits (507), Expect = 5e-51
Identities = 109/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVST 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861141.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 8
[Canis familiaris].
Length = 208
Score = 199 bits (507), Expect = 5e-51
Identities = 109/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVST 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_536211.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 1
[Canis familiaris].
Length = 208
Score = 199 bits (507), Expect = 5e-51
Identities = 109/214 (50%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVST 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_861002.1| PREDICTED: similar to zinc finger, A20 domain containing 3 isoform 5
[Canis familiaris].
Length = 207
Score = 199 bits (505), Expect = 9e-51
Identities = 109/214 (50%), Positives = 130/214 (60%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP----PASVST 56
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + + STS + PV+ + ++E S + T+
Sbjct: 57 LSESLPVQCTDGSVADAQLPLDSTSASVQPSPVSNQSL---LSESVASSQVDSTSVDKAV 113
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 114 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 173
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 174 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 207
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,411,719
Number of extensions: 1481319
Number of successful extensions: 4444
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4424
Number of HSP's successfully gapped: 26
Length of query: 596
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 487
Effective length of database: 15,240,880
Effective search space: 7422308560
Effective search space used: 7422308560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095890.1| AN1-type zinc finger protein 5 [Homo sapiens]. 360 2e-99
Alignment gi|NP_005998.1| AN1-type zinc finger protein 5 [Homo sapiens]. 360 2e-99
Alignment gi|NP_001095891.1| AN1-type zinc finger protein 5 [Homo sapiens]. 360 2e-99
Alignment gi|NP_001229845.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
Alignment gi|NP_001229843.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
Alignment gi|NP_001229842.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
Alignment gi|NP_001229841.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
Alignment gi|NP_001229844.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
Alignment gi|NP_061879.2| AN1-type zinc finger protein 6 isoform a [Homo ... 204 2e-52
Alignment gi|NP_001229840.1| AN1-type zinc finger protein 6 isoform a [Ho... 204 2e-52
>ref|NP_001095890.1| AN1-type zinc finger protein 5 [Homo sapiens].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRAD SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_005998.1| AN1-type zinc finger protein 5 [Homo sapiens].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRAD SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_001095891.1| AN1-type zinc finger protein 5 [Homo sapiens].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRAD SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_001229845.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229843.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229842.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229841.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229844.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_061879.2| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|NP_001229840.1| AN1-type zinc finger protein 6 isoform a [Homo sapiens].
Length = 208
Score = 204 bits (519), Expect = 2e-52
Identities = 111/214 (51%), Positives = 131/214 (61%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP T S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISPPAT---SVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + A STS + PV+ + ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSL---LSESVASSQLDSTSVDKAV 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDVQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,629,237
Number of extensions: 1479919
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4083
Number of HSP's successfully gapped: 25
Length of query: 596
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 488
Effective length of database: 14,737,052
Effective search space: 7191681376
Effective search space used: 7191681376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033577.1| AN1-type zinc finger protein 5 [Mus musculus]. 360 2e-99
Alignment gi|NP_075361.2| AN1-type zinc finger protein 6 [Mus musculus]. 204 1e-52
Alignment gi|NP_001074786.1| AN1-type zinc finger and ubiquitin domain-co... 75 1e-13
Alignment gi|NP_683728.1| AN1-type zinc finger protein 3 [Mus musculus]. 59 2e-08
>ref|NP_033577.1| AN1-type zinc finger protein 5 [Mus musculus].
Length = 213
Score = 360 bits (924), Expect = 2e-99
Identities = 178/213 (83%), Positives = 178/213 (83%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRADA LNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|NP_075361.2| AN1-type zinc finger protein 6 [Mus musculus].
Length = 223
Score = 204 bits (520), Expect = 1e-52
Identities = 112/226 (49%), Positives = 134/226 (59%), Gaps = 13/226 (5%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQAPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAASVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPV----------AALPVTQQMTEMSISRE 886
S+S VQ AD S+ + + A STS + PV A V + ++S
Sbjct: 58 LSESLPVQCADGSVPDAQSALDSTSSSMQPGPVSNQSLLSESVAPSQVDSTSVDKAVSET 117
Query: 887 DKITTPKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--NRCFMCRKKVGLTGFD 1060
+ + P+ NRCFMCRKKVGLTGF+
Sbjct: 118 EDLQGPRAEGLVPLECDPPSSVSDTTQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFE 177
Query: 1061 CRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
CRCGN++CG+HRYSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 178 CRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 223
>ref|NP_001074786.1| AN1-type zinc finger and ubiquitin domain-containing protein 1 [Mus
musculus].
Length = 758
Score = 75.5 bits (184), Expect = 1e-13
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Frame = +2
Query: 1019 CFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQR 1195
CF+C KK GL T F+CRCGN FC HRY++ H C YDYK+ + + NPVV A K+ +
Sbjct: 698 CFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCTYDYKSAGRRYLEEANPVVNAPKLPK 757
Query: 1196 I 1198
I
Sbjct: 758 I 758
>ref|NP_683728.1| AN1-type zinc finger protein 3 [Mus musculus].
Length = 205
Score = 58.5 bits (140), Expect = 2e-08
Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 7/190 (3%)
Frame = +2
Query: 611 CGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADASLNNCE 790
CGF+G+ +T +CS C+ + ++Q + T S SNS SD S + + NN
Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDDD-----STPSTSNSQ-SDLFS-EETTSDNNNTS 72
Query: 791 GAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXXXXXXXXXXXXXXXXXXX 970
+ S +++P L VT TE E++ + K
Sbjct: 73 VTTPTLSPSQQSLPTE-LNVTSPSTEEYSQSENEASPVKRPRLVENPERPEESGRSKQKS 131
Query: 971 XXXXXXXXXXXXXXNRCFMCRKKVGLTGFD---CRCGNLFCGLHRYSDKHNCPYDY---- 1129
RCF C+ K+ L + CRCG +FC LHR ++H+C +D+
Sbjct: 132 R-------------RRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRG 178
Query: 1130 KAEAAAKIRK 1159
+ EA K+ K
Sbjct: 179 REEAIMKMVK 188
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 51,918,684
Number of extensions: 1269937
Number of successful extensions: 3499
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3495
Number of HSP's successfully gapped: 6
Length of query: 596
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 489
Effective length of database: 12,403,707
Effective search space: 6065412723
Effective search space used: 6065412723
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090975.1| AN1-type zinc finger protein 5 [Sus scrofa]. 362 e-100
Alignment gi|XP_001928215.1| PREDICTED: AN1-type zinc finger protein 6 [S... 202 5e-52
Alignment gi|XP_003353593.1| PREDICTED: hypothetical protein LOC100621161... 142 6e-34
Alignment gi|XP_003133160.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zin... 75 1e-13
>ref|NP_001090975.1| AN1-type zinc finger protein 5 [Sus scrofa].
Length = 213
Score = 362 bits (928), Expect = e-100
Identities = 179/213 (84%), Positives = 179/213 (84%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 739
MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT
Sbjct: 1 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 60
Query: 740 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXXX 919
SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKT
Sbjct: 61 SDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVS 120
Query: 920 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 1099
NRCFMCRKKVGLTGFDCRCGNLFCGLHRY
Sbjct: 121 EPVVTQPSPSVSQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRY 180
Query: 1100 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI
Sbjct: 181 SDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ref|XP_001928215.1| PREDICTED: AN1-type zinc finger protein 6 [Sus scrofa].
Length = 208
Score = 202 bits (514), Expect = 5e-52
Identities = 110/214 (51%), Positives = 129/214 (60%), Gaps = 1/214 (0%)
Frame = +2
Query: 560 MAQETNQTPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNS-GRMSPMGTASGSNSP 736
MAQETN + PMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQ +S GR+SP + S S
Sbjct: 1 MAQETNHSQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNSSNGRISP---PAPSVSS 57
Query: 737 TSDSASVQRADASLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTXX 916
S+S VQ D S+ + STS + PV P ++E S + T+
Sbjct: 58 LSESLPVQCTDGSVPEAQSTLDSTSSSLQPSPV---PNQSLLSESVASSQVDSTSVDKAI 114
Query: 917 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRCFMCRKKVGLTGFDCRCGNLFCGLHR 1096
NRCFMCRKKVGLTGF+CRCGN++CG+HR
Sbjct: 115 PETEDLQASVSDTAQQPSEEQSKSLEKPKQKKNRCFMCRKKVGLTGFECRCGNVYCGVHR 174
Query: 1097 YSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 1198
YSD HNC Y+YKA+AA KIRKENPVVV EKIQ+I
Sbjct: 175 YSDVHNCSYNYKADAAEKIRKENPVVVGEKIQKI 208
>ref|XP_003353593.1| PREDICTED: hypothetical protein LOC100621161 [Sus scrofa].
Length = 196
Score = 142 bits (358), Expect = 6e-34
Identities = 89/189 (47%), Positives = 91/189 (48%)
Frame = +3
Query: 132 PRAPSAGPCGAQA*LRAPRSPSESAQPAAXXXXXXXXXSAEXXXXXXXXXXXXXXXXXXX 311
P P + G + LRAP SPSESAQPAA SAE
Sbjct: 10 PSFPQSRSAGRRERLRAPGSPSESAQPAAGGGVRRRRVSAESCLSRRGLRSSLRLLCPPA 69
Query: 312 XXXXXXXXXXXXXXXXXXXXXXXNKEGPXXXXXXXXXXTSCGSDXXXXXXXXHPTRLSLR 491
NKEGP TSCGSD HPTRLSLR
Sbjct: 70 PRRFPPPTSRAPACPGHAHCCCGNKEGPRGGGGGGA--TSCGSDRPAAAAPRHPTRLSLR 127
Query: 492 ARXXXXXXXXXXXXXXXXXXXKIWLRRLTRPQGPCCVVQDVAFMGILGQMECVLFATKNI 671
AR KIWLRRLTRPQGPCCVVQDVAFMGILGQMECVLFATKNI
Sbjct: 128 ARTGPTAPVSRASPAPGPAGRKIWLRRLTRPQGPCCVVQDVAFMGILGQMECVLFATKNI 187
Query: 672 FRDSRIVAE 698
FRDSRIVAE
Sbjct: 188 FRDSRIVAE 196
>ref|XP_003133160.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and ubiquitin
domain-containing protein 1-like [Sus scrofa].
Length = 759
Score = 75.1 bits (183), Expect = 1e-13
Identities = 31/61 (50%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Frame = +2
Query: 1019 CFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQR 1195
CF+C KK GL T ++CRCGN FC HRY++ H+C YDYK+ +++ NPVV A K+ +
Sbjct: 699 CFLCGKKTGLATSYECRCGNNFCASHRYAETHSCTYDYKSAGRRYLQEANPVVNAPKLPK 758
Query: 1196 I 1198
I
Sbjct: 759 I 759
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,347,926
Number of extensions: 970993
Number of successful extensions: 2794
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2789
Number of HSP's successfully gapped: 5
Length of query: 596
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 491
Effective length of database: 8,729,747
Effective search space: 4286305777
Effective search space used: 4286305777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002827
(1790 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118705.1| Sus scrofa unplaced genomic scaffold ChrUScaf1911 1380 0.0
Sscrofa_Chr01 1380 0.0
>gb|JH118705.1| Sus scrofa unplaced genomic scaffold ChrUScaf1911
Length = 50984
Score = 1380 bits (696), Expect = 0.0
Identities = 730/743 (98%), Gaps = 1/743 (0%)
Strand = Plus / Plus
Query: 1048 tacagggtttgactgccgatgtggaaatttgttttgtggacttcaccgttactctgacaa 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8574 tacagggtttgactgccgatgtggaaatttgttttgtggacttcaccgttactctgacaa 8633
Query: 1108 gcacaactgtccgtatgattacaaagcagaagctgcagcaaaaatcaggaaagagaatcc 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8634 gcacaactgtccgtatgattacaaagcagaagctgcagcaaaaatcaggaaagagaatcc 8693
Query: 1168 agttgttgtggctgaaaaaatccagagaatataaattactacttgtgaagagactgatac 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8694 agttgttgtggctgaaaaaatccagagaatataaattactacttgtgaagagactgatac 8753
Query: 1228 ttttgtttttattttaatatatcgtaggaaaacattaaagagcagatgcatggccatttt 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8754 ttttgtttttattttaatatatcgtaggaaaacattaaagagcagatgcatggccatttt 8813
Query: 1288 cctttgatgttctccagagttttactttacacttgtctgtcttacaattgatattttagg 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8814 cctttgatgttctccagagttttactttacacttgtctgtcttacaattgatattttagg 8873
Query: 1348 atgtttgggtgtttgttacaggcagaattggatagatacagccctacaaaatgtatatgc 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8874 atgtttgggtgtttgttacaggcagaattggatagatacagccctacaaaatgtatatgc 8933
Query: 1408 cctcccctgaataaaattggatgaaaatctgcacagcaaattgaaatacacagataatag 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8934 cctcccctgaataaaattggatgaaaatctgcacagcaaattgaaatacacagataatag 8993
Query: 1468 ggactacatttagttcccttgtgccaaacaatacatgaaatatctgcatgtttgcagcat 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8994 ggactacatttagttcccttgtgccaaacaatacatgaaatatctgcatgtttgcagcat 9053
Query: 1528 atctgcctttgggaatgtaatcaaggtataacctttggctagtgttatgtgcctgtannn 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9054 atctgcctttgggaatgtaatcaaggtataacctttggctagtgttatgtgcctgtattt 9113
Query: 1588 nnnnnaaaaatggtacaccagaaaaggactggcagtctacttctaccatagttaaacttc 1647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9114 tttttaaaaatggtacaccagaaaaggactggcagtctacttctaccatagttaaacttc 9173
Query: 1648 accctgttaatttccacatgtcctttggaagcgggaagaaagctataaagaggatcagac 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9174 accctgttaatttccacatgtcctttggaagcgggaagaaagctataaagaggatcagac 9233
Query: 1708 ctttcatgnaaccatgcggtgccatatgtaagcctgggtaaatggttcttctaaaaagct 1767
|||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 9234 ctttcatgaaaccatgcggtgccatatgtaagcctggttaattgg-tcttctaaaaagct 9292
Query: 1768 gtcaaatgaaacattgtgaaagg 1790
||||||||| |||||||||||||
Sbjct: 9293 gtcaaatgagacattgtgaaagg 9315
Score = 321 bits (162), Expect = 7e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 550 gcagaaaaatatggctcaggagactaaccagaccccagggcccatgctgtgtagtacagg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4147 gcagaaaaatatggctcaggagactaaccagaccccagggcccatgctgtgtagtacagg 4206
Query: 610 atgtggcttttatgggaatcctaggacaaatggaatgtgttctgtttgctacaaagaaca 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4207 atgtggcttttatgggaatcctaggacaaatggaatgtgttctgtttgctacaaagaaca 4266
Query: 670 tcttcagagacagcagaatagtggcagaatgagtccaatggg 711
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4267 tcttcagagacagcagaatagtggcagaatgagtccaatggg 4308
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 925 agttgtcactcaacccagtccatcagtttctcagcccagtacttctcaaagtgaagaaaa 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7751 agttgtcactcaacccagtccatcagtttctcagcccagtacttctcaaagtgaagaaaa 7810
Query: 985 agctcctgagttgcccaaaccaaagaagaacagatgtttcatgtgcagaaagaaagttgg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7811 agctcctgagttgcccaaaccaaagaagaacagatgtttcatgtgcagaaagaaagttgg 7870
Query: 1045 ccttacagg 1053
|||||||||
Sbjct: 7871 ccttacagg 7879
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 821 agaaatgtgcctgtggctgccttgcctgtaactcagcaaatgaccgaaatgagcatttca 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5568 agaaatgtgcctgtggctgccttgcctgtaactcagcaaatgaccgaaatgagcatttca 5627
Query: 881 agagaggacaaaataactaccccgaaaacagaggtgtcagagccag 926
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5628 agagaggacaaaataactaccccgaaaacagaggtgtcagagccag 5673
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 757 acaaagagcagatgctagtttaaacaactgtgaaggtgctgctggcagcacatctgaaaa 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4881 acaaagagcagatgctagtttaaacaactgtgaaggtgctgctggcagcacatctgaaaa 4940
Query: 817 atcaag 822
||||||
Sbjct: 4941 atcaag 4946
>Sscrofa_Chr01
|| Length = 315321322
Score = 1380 bits (696), Expect = 0.0
Identities = 730/743 (98%), Gaps = 1/743 (0%)
Strand = Plus / Minus
Query: 1048 tacagggtttgactgccgatgtggaaatttgttttgtggacttcaccgttactctgacaa 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231430 tacagggtttgactgccgatgtggaaatttgttttgtggacttcaccgttactctgacaa 252231371
Query: 1108 gcacaactgtccgtatgattacaaagcagaagctgcagcaaaaatcaggaaagagaatcc 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231370 gcacaactgtccgtatgattacaaagcagaagctgcagcaaaaatcaggaaagagaatcc 252231311
Query: 1168 agttgttgtggctgaaaaaatccagagaatataaattactacttgtgaagagactgatac 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231310 agttgttgtggctgaaaaaatccagagaatataaattactacttgtgaagagactgatac 252231251
Query: 1228 ttttgtttttattttaatatatcgtaggaaaacattaaagagcagatgcatggccatttt 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231250 ttttgtttttattttaatatatcgtaggaaaacattaaagagcagatgcatggccatttt 252231191
Query: 1288 cctttgatgttctccagagttttactttacacttgtctgtcttacaattgatattttagg 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231190 cctttgatgttctccagagttttactttacacttgtctgtcttacaattgatattttagg 252231131
Query: 1348 atgtttgggtgtttgttacaggcagaattggatagatacagccctacaaaatgtatatgc 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231130 atgtttgggtgtttgttacaggcagaattggatagatacagccctacaaaatgtatatgc 252231071
Query: 1408 cctcccctgaataaaattggatgaaaatctgcacagcaaattgaaatacacagataatag 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231070 cctcccctgaataaaattggatgaaaatctgcacagcaaattgaaatacacagataatag 252231011
Query: 1468 ggactacatttagttcccttgtgccaaacaatacatgaaatatctgcatgtttgcagcat 1527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252231010 ggactacatttagttcccttgtgccaaacaatacatgaaatatctgcatgtttgcagcat 252230951
Query: 1528 atctgcctttgggaatgtaatcaaggtataacctttggctagtgttatgtgcctgtannn 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252230950 atctgcctttgggaatgtaatcaaggtataacctttggctagtgttatgtgcctgtattt 252230891
Query: 1588 nnnnnaaaaatggtacaccagaaaaggactggcagtctacttctaccatagttaaacttc 1647
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252230890 tttttaaaaatggtacaccagaaaaggactggcagtctacttctaccatagttaaacttc 252230831
Query: 1648 accctgttaatttccacatgtcctttggaagcgggaagaaagctataaagaggatcagac 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252230830 accctgttaatttccacatgtcctttggaagcgggaagaaagctataaagaggatcagac 252230771
Query: 1708 ctttcatgnaaccatgcggtgccatatgtaagcctgggtaaatggttcttctaaaaagct 1767
|||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 252230770 ctttcatgaaaccatgcggtgccatatgtaagcctggttaattgg-tcttctaaaaagct 252230712
Query: 1768 gtcaaatgaaacattgtgaaagg 1790
||||||||| |||||||||||||
Sbjct: 252230711 gtcaaatgagacattgtgaaagg 252230689
Score = 515 bits (260), Expect = e-143
Identities = 263/264 (99%)
Strand = Plus / Minus
Query: 1 ctttccctcagagccggagcgccggcaggagagaacgcgtcagtgagctggagcgcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240463 ctttccctcagagccggagcgccggcaggagagaacgcgtcagtgagctggagcgcagat 252240404
Query: 61 ctgtctgcatctcagttttgggcttgtagctcccgggaacagcgcagcttcctcggtggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240403 ctgtctgcatctcagttttgggcttgtagctcccgggaacagcgcagcttcctcggtggt 252240344
Query: 121 agaagaagcatccgagagcgccatccgcgggcccttgcggcgcccaggcctagctgcgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240343 agaagaagcatccgagagcgccatccgcgggcccttgcggcgcccaggcctagctgcgcg 252240284
Query: 181 cgccccgctcgccctcggagtctgcccaacccgccgctggtggaggcgtgaggcgacgac 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240283 cgcccggctcgccctcggagtctgcccaacccgccgctggtggaggcgtgaggcgacgac 252240224
Query: 241 gggtgagcgccgaaagctgcctta 264
||||||||||||||||||||||||
Sbjct: 252240223 gggtgagcgccgaaagctgcctta 252240200
Score = 321 bits (162), Expect = 7e-85
Identities = 162/162 (100%)
Strand = Plus / Minus
Query: 550 gcagaaaaatatggctcaggagactaaccagaccccagggcccatgctgtgtagtacagg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252235778 gcagaaaaatatggctcaggagactaaccagaccccagggcccatgctgtgtagtacagg 252235719
Query: 610 atgtggcttttatgggaatcctaggacaaatggaatgtgttctgtttgctacaaagaaca 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252235718 atgtggcttttatgggaatcctaggacaaatggaatgtgttctgtttgctacaaagaaca 252235659
Query: 670 tcttcagagacagcagaatagtggcagaatgagtccaatggg 711
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252235658 tcttcagagacagcagaatagtggcagaatgagtccaatggg 252235617
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Minus
Query: 925 agttgtcactcaacccagtccatcagtttctcagcccagtacttctcaaagtgaagaaaa 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252232253 agttgtcactcaacccagtccatcagtttctcagcccagtacttctcaaagtgaagaaaa 252232194
Query: 985 agctcctgagttgcccaaaccaaagaagaacagatgtttcatgtgcagaaagaaagttgg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252232193 agctcctgagttgcccaaaccaaagaagaacagatgtttcatgtgcagaaagaaagttgg 252232134
Query: 1045 ccttacagg 1053
|||||||||
Sbjct: 252232133 ccttacagg 252232125
Score = 244 bits (123), Expect = 1e-61
Identities = 126/127 (99%)
Strand = Plus / Minus
Query: 424 caacctcctgcggctccgaccggcccgcggctgcggctccaaggcacccgactcgcctat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240046 caacctcctgcggctccgaccggcccgcggctgcggctccaaggcacccgactcgcctat 252239987
Query: 484 ccctgagggctcggaccggccccaccgcgccggcgtcgcgcgcgagcccggctcctggcc 543
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 252239986 ccctgagggctcggaccggccccaccgcgccggtgtcgcgcgcgagcccggctcctggcc 252239927
Query: 544 ccgcagg 550
|||||||
Sbjct: 252239926 ccgcagg 252239920
Score = 216 bits (109), Expect = 3e-53
Identities = 112/113 (99%)
Strand = Plus / Minus
Query: 710 gggacagctagtggttccaacagtcctacctcagattctgcatctgtacaaagagcagat 769
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252235170 gggacagctagtggctccaacagtcctacctcagattctgcatctgtacaaagagcagat 252235111
Query: 770 gctagtttaaacaactgtgaaggtgctgctggcagcacatctgaaaaatcaag 822
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252235110 gctagtttaaacaactgtgaaggtgctgctggcagcacatctgaaaaatcaag 252235058
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 821 agaaatgtgcctgtggctgccttgcctgtaactcagcaaatgaccgaaatgagcatttca 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252234436 agaaatgtgcctgtggctgccttgcctgtaactcagcaaatgaccgaaatgagcatttca 252234377
Query: 881 agagaggacaaaataactaccccgaaaacagaggtgtcagagccag 926
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252234376 agagaggacaaaataactaccccgaaaacagaggtgtcagagccag 252234331
Score = 97.6 bits (49), Expect = 2e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 348 gcgtgtcccggccacgctcactgctgctgcgggaacaaagaaggacccc 396
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252240116 gcgtgtcccggccacgctcactgctgctgcgggaacaaagaaggacccc 252240068
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,305,902
Number of extensions: 571
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 15
Length of query: 1790
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1768
Effective length of database: 2,808,408,574
Effective search space: 4965266358832
Effective search space used: 4965266358832
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)