Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bo... 366 e-109
Alignment gi|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos tauru... 224 1e-58
>ref|NP_001029495.1| ribosyldihydronicotinamide dehydrogenase [Bos taurus].
Length = 231
Score = 366 bits (939), Expect(2) = e-109
Identities = 172/199 (86%), Positives = 186/199 (93%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEPRS NGSLKDVAVAELS+QGC V VSDLYAM FEP AT KD+TG L
Sbjct: 1 MAGKKVLIVYAHQEPRSLNGSLKDVAVAELSQQGCSVIVSDLYAMNFEPRATGKDITGTL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP FFNYGVE+H+AY++++LSSDI+EEQKKLQEA+LVIFQFPLYWFSVPA+LKGWMDRV
Sbjct: 61 SNPGFFNYGVEAHKAYKKQSLSSDIIEEQKKLQEANLVIFQFPLYWFSVPAVLKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LCQGFAFDFPG YDDGFLKGKLA+LS TTGGTA M+SKTGV GDFRYFLWPLQHGTLHFC
Sbjct: 121 LCQGFAFDFPGSYDDGFLKGKLAILSLTTGGTASMFSKTGVNGDFRYFLWPLQHGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SFGPE ASEE
Sbjct: 181 GFKVLAPQISFGPEMASEE 199
Score = 50.4 bits (119), Expect(2) = e-109
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3
Query: 1032 MHQRKERRGMVAAWAQRLKTIWEEEPIDCS 1121
M +ER+ MVA+WAQRLKT+WEEEPI CS
Sbjct: 195 MASEEERKRMVASWAQRLKTLWEEEPIQCS 224
>ref|NP_001029707.1| NAD(P)H dehydrogenase [quinone] 1 [Bos taurus].
Length = 274
Score = 224 bits (571), Expect = 1e-58
Identities = 116/212 (54%), Positives = 140/212 (66%), Gaps = 4/212 (1%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MA +K LIV AH E SFN ++K+ A+ L R+G VTVSDLYAM F P +RKD+TG L
Sbjct: 1 MAVRKALIVLAHSERTSFNYAMKEAAIEALKRKGWEVTVSDLYAMNFNPVISRKDITGKL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+P F Y E+ AY+ LS DIV EQKKL+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 KDPGNFQYPAETVLAYKEGRLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
L FA+ + YD G + K AVLS TTGG+ MYS G+ GD LWP+Q GTLHFC
Sbjct: 121 LIGEFAYKYAAMYDKGPFRNKKAVLSITTGGSGSMYSLHGIHGDMNIILWPIQSGTLHFC 180
Query: 989 GFKVLAPQVSFG----PEYASEERAEGDGGRL 1072
GF+VL PQ+++ PE A + EG RL
Sbjct: 181 GFQVLEPQLTYSIGHTPEDARVQILEGWKKRL 212
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,904,959
Number of extensions: 1308004
Number of successful extensions: 5621
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5594
Number of HSP's successfully gapped: 3
Length of query: 459
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,174,046
Effective search space: 5003438238
Effective search space used: 5003438238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 348 e-104
Alignment gi|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 250 8e-75
Alignment gi|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, qu... 243 2e-64
Alignment gi|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [qu... 218 8e-57
>ref|XP_848388.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 2
[Canis familiaris].
Length = 231
Score = 348 bits (893), Expect(2) = e-104
Identities = 163/199 (81%), Positives = 182/199 (91%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELSRQGC +TVSDLYAM FEP ATRKDV GAL
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP FNYG+E++EA+++++L+SDI +EQKK+QEADLVIFQFPLYWFS+PAILKGWMDRV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LCQGFAFD PGFYD GFLKGKLA++S TTGGTAEMYS++GV GDFRYFLW LQHG LHFC
Sbjct: 121 LCQGFAFDIPGFYDSGFLKGKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SF PE ASEE
Sbjct: 181 GFKVLAPQISFAPEIASEE 199
Score = 50.4 bits (119), Expect(2) = e-104
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 1044 KERRGMVAAWAQRLKTIWEEEPIDCS 1121
+ER+ MV +WAQRL+TIWEEEPIDCS
Sbjct: 199 EERKAMVTSWAQRLRTIWEEEPIDCS 224
>ref|XP_856036.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 3
[Canis familiaris].
Length = 193
Score = 250 bits (638), Expect(2) = 8e-75
Identities = 128/199 (64%), Positives = 146/199 (73%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELSRQGC +TVSDLYAM FEP ATRKDV GAL
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP FNYG+E++EA+++++L+SDI +EQKK+QEADLVIFQ
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQ------------------- 101
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
GKLA++S TTGGTAEMYS++GV GDFRYFLW LQHG LHFC
Sbjct: 102 -------------------GKLALVSLTTGGTAEMYSRSGVSGDFRYFLWALQHGALHFC 142
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SF PE ASEE
Sbjct: 143 GFKVLAPQISFAPEIASEE 161
Score = 50.4 bits (119), Expect(2) = 8e-75
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +3
Query: 1044 KERRGMVAAWAQRLKTIWEEEPIDCS 1121
+ER+ MV +WAQRL+TIWEEEPIDCS
Sbjct: 161 EERKAMVTSWAQRLRTIWEEEPIDCS 186
>ref|XP_856074.1| PREDICTED: similar to NAD(P)H dehydrogenase, quinone 2 isoform 4
[Canis familiaris].
Length = 146
Score = 243 bits (621), Expect = 2e-64
Identities = 114/139 (82%), Positives = 128/139 (92%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELSRQGC +TVSDLYAM FEP ATRKDV GAL
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVDELSRQGCAITVSDLYAMDFEPRATRKDVIGAL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP FNYG+E++EA+++++L+SDI +EQKK+QEADLVIFQFPLYWFS+PAILKGWMDRV
Sbjct: 61 SNPELFNYGMEAYEAFKKRSLASDITDEQKKVQEADLVIFQFPLYWFSMPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLK 865
LCQGFAFD PGFYD GFLK
Sbjct: 121 LCQGFAFDIPGFYDSGFLK 139
>ref|XP_853617.1| PREDICTED: similar to NAD(P)H dehydrogenase [quinone] 1 (Quinone
reductase 1) (QR1) (DT-diaphorase) (DTD) (Azoreductase)
(Phylloquinone reductase) (Menadione reductase) [Canis
familiaris].
Length = 433
Score = 218 bits (556), Expect = 8e-57
Identities = 111/207 (53%), Positives = 132/207 (63%), Gaps = 7/207 (3%)
Frame = +2
Query: 422 REEHPS-------PRNMAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYA 580
R HP PR A +K LIV AH E SFN ++K+ AV L G VTVSDLYA
Sbjct: 144 RSAHPEVGAASLLPRVPAARKALIVLAHAEKASFNHAMKEAAVEALEATGWEVTVSDLYA 203
Query: 581 MGFEPSATRKDVTGALSNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPL 760
M F P +R+DVTG +P F Y E+ AY+ LS DIV EQKKL+ ADLVIFQFPL
Sbjct: 204 MNFNPVISRRDVTGTPKDPGNFQYPAEAALAYKEGRLSPDIVAEQKKLEAADLVIFQFPL 263
Query: 761 YWFSVPAILKGWMDRVLCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGD 940
WF VPAILKGW +RVL FA+ + YD G + K VLS TTGG+ MYS G+ GD
Sbjct: 264 QWFGVPAILKGWFERVLIGEFAYTYAAMYDKGPFRNKKTVLSITTGGSGSMYSLQGIHGD 323
Query: 941 FRYFLWPLQHGTLHFCGFKVLAPQVSF 1021
LWP+Q GTLHFCGF+VL PQ+++
Sbjct: 324 MNIILWPIQSGTLHFCGFQVLEPQLTY 350
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,158,089
Number of extensions: 1358463
Number of successful extensions: 6014
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5972
Number of HSP's successfully gapped: 7
Length of query: 459
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 353
Effective length of database: 15,340,888
Effective search space: 5415333464
Effective search space used: 5415333464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quino... 352 e-105
Alignment gi|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Ho... 216 4e-56
Alignment gi|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b ... 162 5e-40
Alignment gi|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c ... 153 3e-37
>ref|NP_000895.2| ribosyldihydronicotinamide dehydrogenase [quinone] [Homo sapiens].
Length = 231
Score = 352 bits (903), Expect(2) = e-105
Identities = 166/203 (81%), Positives = 183/203 (90%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK+VAV ELSRQGC VTVSDLYAM EP AT KD+TG L
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP FNYGVE+HEAY++++L+SDI +EQKK++EADLVIFQFPLYWFSVPAILKGWMDRV
Sbjct: 61 SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LCQGFAFD PGFYD G L+GKLA+LS TTGGTAEMY+KTGV GD RYFLWPLQHGTLHFC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEERAEG 1057
GFKVLAPQ+SF PE ASEE +G
Sbjct: 181 GFKVLAPQISFAPEIASEEERKG 203
Score = 48.5 bits (114), Expect(2) = e-105
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +3
Query: 1044 KERRGMVAAWAQRLKTIWEEEPIDCS 1121
+ER+GMVAAW+QRL+TIW+EEPI C+
Sbjct: 199 EERKGMVAAWSQRLQTIWKEEPIPCT 224
>ref|NP_000894.1| NAD(P)H dehydrogenase [quinone] 1 isoform a [Homo sapiens].
Length = 274
Score = 216 bits (550), Expect = 4e-56
Identities = 105/191 (54%), Positives = 129/191 (67%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
M G++ LIV AH E SFN ++K+ A A L ++G V SDLYAM F P +RKD+TG L
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+P+ F Y ES AY+ LS DIV EQKKL+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
FA+ + YD G + K AVLS TTGG+ MYS G+ GD LWP+Q G LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 180
Query: 989 GFKVLAPQVSF 1021
GF+VL PQ+++
Sbjct: 181 GFQVLEPQLTY 191
>ref|NP_001020604.1| NAD(P)H dehydrogenase [quinone] 1 isoform b [Homo sapiens].
Length = 240
Score = 162 bits (411), Expect = 5e-40
Identities = 87/191 (45%), Positives = 108/191 (56%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
M G++ LIV AH E SFN ++K+ A A L ++G V SDLYAM F P +RKD+TG L
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+P+ F Y ES AY+ LS DIV EQKKL+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
FA+ + YD G P + G LHFC
Sbjct: 121 FIGEFAYTYAAMYDKG----------------------------------PFRSGILHFC 146
Query: 989 GFKVLAPQVSF 1021
GF+VL PQ+++
Sbjct: 147 GFQVLEPQLTY 157
>ref|NP_001020605.1| NAD(P)H dehydrogenase [quinone] 1 isoform c [Homo sapiens].
Length = 236
Score = 153 bits (387), Expect = 3e-37
Identities = 85/191 (44%), Positives = 105/191 (54%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
M G++ LIV AH E SFN ++K+ A A L ++G V SDLYAM F P +RKD+TG L
Sbjct: 1 MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+P+ F Y ES AY+ LS DIV EQKKL+ ADLVIFQ
Sbjct: 61 KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQ------------------- 101
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
K AVLS TTGG+ MYS G+ GD LWP+Q G LHFC
Sbjct: 102 -------------------SKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 142
Query: 989 GFKVLAPQVSF 1021
GF+VL PQ+++
Sbjct: 143 GFQVLEPQLTY 153
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,782,534
Number of extensions: 1300546
Number of successful extensions: 5230
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5205
Number of HSP's successfully gapped: 6
Length of query: 459
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 353
Effective length of database: 14,802,980
Effective search space: 5225451940
Effective search space used: 5225451940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [qu... 350 e-103
Alignment gi|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [qu... 350 e-103
Alignment gi|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quino... 350 e-103
Alignment gi|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [qu... 275 4e-81
Alignment gi|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus]. 207 2e-53
>ref|NP_001156714.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 350 bits (897), Expect(2) = e-103
Identities = 164/199 (82%), Positives = 182/199 (91%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELS+QGC VTVSDLY+M FEP ATR D+TGA
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP F+YG+E+HEAY++KAL+SDI EEQ+K+QEADLVIFQFPLYWFSVPAILKGWMDRV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LC+GFAFD PGFYD GFLKGKLA+LS TTGGTAEMY+K GV GDFRYFLWPLQHGTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SFG + +SEE
Sbjct: 181 GFKVLAPQISFGLDVSSEE 199
Score = 45.8 bits (107), Expect(2) = e-103
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +3
Query: 1026 LNMHQRKERRGMVAAWAQRLKTIWEEEPIDCS 1121
L++ +ER+ M+A+WAQRLK+IW+EEPI C+
Sbjct: 193 LDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 224
>ref|NP_001156713.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 350 bits (897), Expect(2) = e-103
Identities = 164/199 (82%), Positives = 182/199 (91%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELS+QGC VTVSDLY+M FEP ATR D+TGA
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP F+YG+E+HEAY++KAL+SDI EEQ+K+QEADLVIFQFPLYWFSVPAILKGWMDRV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LC+GFAFD PGFYD GFLKGKLA+LS TTGGTAEMY+K GV GDFRYFLWPLQHGTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SFG + +SEE
Sbjct: 181 GFKVLAPQISFGLDVSSEE 199
Score = 45.8 bits (107), Expect(2) = e-103
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +3
Query: 1026 LNMHQRKERRGMVAAWAQRLKTIWEEEPIDCS 1121
L++ +ER+ M+A+WAQRLK+IW+EEPI C+
Sbjct: 193 LDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 224
>ref|NP_064678.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 1 [Mus
musculus].
Length = 231
Score = 350 bits (897), Expect(2) = e-103
Identities = 164/199 (82%), Positives = 182/199 (91%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MAGKKVLIVYAHQEP+SFNGSLK VAV ELS+QGC VTVSDLY+M FEP ATR D+TGA
Sbjct: 1 MAGKKVLIVYAHQEPKSFNGSLKKVAVEELSKQGCTVTVSDLYSMNFEPRATRNDITGAP 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
SNP F+YG+E+HEAY++KAL+SDI EEQ+K+QEADLVIFQFPLYWFSVPAILKGWMDRV
Sbjct: 61 SNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPLYWFSVPAILKGWMDRV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
LC+GFAFD PGFYD GFLKGKLA+LS TTGGTAEMY+K GV GDFRYFLWPLQHGTLHFC
Sbjct: 121 LCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGDFRYFLWPLQHGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GFKVLAPQ+SFG + +SEE
Sbjct: 181 GFKVLAPQISFGLDVSSEE 199
Score = 45.8 bits (107), Expect(2) = e-103
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +3
Query: 1026 LNMHQRKERRGMVAAWAQRLKTIWEEEPIDCS 1121
L++ +ER+ M+A+WAQRLK+IW+EEPI C+
Sbjct: 193 LDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 224
>ref|NP_001156711.1| ribosyldihydronicotinamide dehydrogenase [quinone] isoform 2 [Mus
musculus].
Length = 187
Score = 275 bits (704), Expect(2) = 4e-81
Identities = 126/155 (81%), Positives = 141/155 (90%)
Frame = +2
Query: 581 MGFEPSATRKDVTGALSNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPL 760
M FEP ATR D+TGA SNP F+YG+E+HEAY++KAL+SDI EEQ+K+QEADLVIFQFPL
Sbjct: 1 MNFEPRATRNDITGAPSNPDVFSYGIETHEAYKKKALTSDIFEEQRKVQEADLVIFQFPL 60
Query: 761 YWFSVPAILKGWMDRVLCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGD 940
YWFSVPAILKGWMDRVLC+GFAFD PGFYD GFLKGKLA+LS TTGGTAEMY+K GV GD
Sbjct: 61 YWFSVPAILKGWMDRVLCRGFAFDIPGFYDSGFLKGKLALLSLTTGGTAEMYTKDGVSGD 120
Query: 941 FRYFLWPLQHGTLHFCGFKVLAPQVSFGPEYASEE 1045
FRYFLWPLQHGTLHFCGFKVLAPQ+SFG + +SEE
Sbjct: 121 FRYFLWPLQHGTLHFCGFKVLAPQISFGLDVSSEE 155
Score = 45.8 bits (107), Expect(2) = 4e-81
Identities = 18/32 (56%), Positives = 27/32 (84%)
Frame = +3
Query: 1026 LNMHQRKERRGMVAAWAQRLKTIWEEEPIDCS 1121
L++ +ER+ M+A+WAQRLK+IW+EEPI C+
Sbjct: 149 LDVSSEEERKVMLASWAQRLKSIWKEEPIHCT 180
>ref|NP_032732.3| NAD(P)H dehydrogenase [quinone] 1 [Mus musculus].
Length = 274
Score = 207 bits (526), Expect = 2e-53
Identities = 102/191 (53%), Positives = 125/191 (65%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MA ++ LIV AH E SFN ++K+ AV L ++G V SDLYAM F P +R D+TG L
Sbjct: 1 MAARRALIVLAHSEKTSFNYAMKEAAVEALKKRGWEVLESDLYAMNFNPIISRNDITGEL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+ F Y ES AY+ LS DIV E KKL+ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 KDSKNFQYPSESSLAYKEGRLSPDIVAEHKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
L GFA+ + YD+G + K +LS TTGG+ MYS GV GD LWP+Q G L FC
Sbjct: 121 LVAGFAYTYAAMYDNGPFQNKKTLLSITTGGSGSMYSLQGVHGDMNVILWPIQSGILRFC 180
Query: 989 GFKVLAPQVSF 1021
GF+VL PQ+ +
Sbjct: 181 GFQVLEPQLVY 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,681,119
Number of extensions: 1065849
Number of successful extensions: 4196
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4175
Number of HSP's successfully gapped: 9
Length of query: 459
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 354
Effective length of database: 12,463,779
Effective search space: 4412177766
Effective search space used: 4412177766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrof... 221 6e-58
>ref|NP_001153085.1| NAD(P)H dehydrogenase [quinone] 1 [Sus scrofa].
Length = 274
Score = 221 bits (564), Expect = 6e-58
Identities = 108/199 (54%), Positives = 134/199 (67%)
Frame = +2
Query: 449 MAGKKVLIVYAHQEPRSFNGSLKDVAVAELSRQGCRVTVSDLYAMGFEPSATRKDVTGAL 628
MA +K LI+ AH E SFN ++K+ AV L R+G V VSDLYAM F P +RKD+TG L
Sbjct: 1 MAVRKALIILAHSEKTSFNYAMKEAAVEALKRRGWEVAVSDLYAMNFNPVISRKDITGKL 60
Query: 629 SNPSFFNYGVESHEAYRRKALSSDIVEEQKKLQEADLVIFQFPLYWFSVPAILKGWMDRV 808
+P F Y E+ AY+ LS DIV EQKK++ ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61 KDPGNFQYPAETALAYKEGRLSPDIVAEQKKVEAADLVIFQFPLQWFGVPAILKGWFERV 120
Query: 809 LCQGFAFDFPGFYDDGFLKGKLAVLSFTTGGTAEMYSKTGVRGDFRYFLWPLQHGTLHFC 988
L FA+ + YD G + K AVLS TTGG+ MYS G+ GD LWP+Q GTLHFC
Sbjct: 121 LIGEFAYTYAAMYDKGPFRNKKAVLSITTGGSGSMYSLQGIHGDMNILLWPIQSGTLHFC 180
Query: 989 GFKVLAPQVSFGPEYASEE 1045
GF+VL PQ+++ + E+
Sbjct: 181 GFQVLEPQLTYSIGHTPED 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,703,037
Number of extensions: 850376
Number of successful extensions: 3733
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3723
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 357
Effective length of database: 8,804,438
Effective search space: 3143184366
Effective search space used: 3143184366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002833
(1379 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 392 e-106
>Sscrofa_Chr07
|| Length = 134764511
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 119 tgcgctggaaggagggcggagaagagggcgtagacgcgcggccgaatccctgcgccaaac 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825637 tgcgctggaaggagggcggagaagagggcgtagacgcgcggccgaatccctgcgccaaac 1825696
Query: 179 ctcgcgcagccttcccgctgcgcccctcaggcgtcggctcgtgcgcggcccgcgctgcga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825697 ctcgcgcagccttcccgctgcgcccctcaggcgtcggctcgtgcgcggcccgcgctgcga 1825756
Query: 239 gaacgtagtttgggtgccggccattttcccggagggcatccacgacctacccctcgtccc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825757 gaacgtagtttgggtgccggccattttcccggagggcatccacgacctacccctcgtccc 1825816
Query: 299 aggcgtgcgctggccgag 316
||||||||||||||||||
Sbjct: 1825817 aggcgtgcgctggccgag 1825834
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 454 aggtaagaaggtgctgatcgtctacgcgcaccaagagccccggtctttcaacgggtcctt 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829081 aggtaagaaggtgctgatcgtctacgcgcaccaagagccccggtctttcaacgggtcctt 1829140
Query: 514 gaaggacgtggccgtggccgagctgagccggcagggctgcagggtcaccgtttcggacct 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829141 gaaggacgtggccgtggccgagctgagccggcagggctgcagggtcaccgtttcggacct 1829200
Query: 574 ctatgccatgggctttgagccgagtgccacgaggaaggat 613
||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829201 ctatgccatgggctttgagccgagtgccacgaggaaggat 1829240
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 315 agatcttgggggtccctgaggaggtgagcgtgcctgacagcccagggcccagcccacggg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827168 agatcttgggggtccctgaggaggtgagcgtgcctgacagcccagggcccagcccacggg 1827227
Query: 375 atcttctgtgccaggactgacagcagaccctcctcccggcaggactcagagaagaacatc 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827228 atcttctgtgccaggactgacagcagaccctcctcccggcaggactcagagaagaacatc 1827287
Query: 435 catctcccaggaacatggcaggt 457
|||||||||||||||||||||||
Sbjct: 1827288 catctcccaggaacatggcaggt 1827310
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 749 cagttcccgctctactggttcagcgtgccggccatcctgaagggctggatggacagggtg 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814639 cagttcccgctctactggttcagcgtgccggccatcctgaagggctggatggacagggtg 1814698
Query: 809 ctgtgccagggcttcgccttcgacttcccgggcttctacgacgacggcttcctcaagg 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1814699 ctgtgccagggcttcgccttcgacttcccgggcttctacgacgacggcttcctcaagg 1814756
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 864 agggtaaactggccgtcctgtccttcaccacgggcggcactgccgagatgtactcgaaaa 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1815982 agggtaaactggccgtcctgtccttcaccacgggcggcactgccgagatgtactcgaaaa 1816041
Query: 924 ctggagtccgtggagattttcgctatttcctctggcccctccag 967
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816042 ctggagtccgtggagattttcgctatttcctctggcccctccag 1816085
Score = 73.8 bits (37), Expect = 2e-10
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 agggtggtccgaacagaaccaggatctggcgtagagcgcgt 48
||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1825526 agggtggtccgaacagaaccaggatctggcgaagagcgcgt 1825566
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,273,879
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 6
Length of query: 1379
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1358
Effective length of database: 2,808,413,156
Effective search space: 3813825065848
Effective search space used: 3813825065848
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)