Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035601.2| sulfide dehydrogenase like [Bos taurus]. 520 e-148
>ref|NP_001035601.2| sulfide dehydrogenase like [Bos taurus].
Length = 450
Score = 520 bits (1340), Expect = e-148
Identities = 259/293 (88%), Positives = 276/293 (94%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LA+V S R RLFACFLRLG+QQ SPLQLHTG +LAAK++YEVLVLGGGSGGI+MAA
Sbjct: 1 MTLLASVVSCSRVRLFACFLRLGSQQASPLQLHTGASLAAKSYYEVLVLGGGSGGISMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKR+VGAENVAIVEPSE HFYQPIWTLVGAG K LSSSGRPTA+VIPSGVEWIKARVVD
Sbjct: 61 RMKRKVGAENVAIVEPSETHFYQPIWTLVGAGAKPLSSSGRPTANVIPSGVEWIKARVVD 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD+ K+ISY+YLIIALGIQLDYEKIK LPEGF HPKIGSNYS RTVEKTWK
Sbjct: 121 LNPDKNCIHTDDDKKISYKYLIIALGIQLDYEKIKSLPEGFAHPKIGSNYSVRTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTG+R KANIIFNTSLGAIFGVK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRPKANIIFNTSLGAIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYADALQ+II+ER LT+N +QNLIEVRADKQEAVFENLDKPGETQ+ISYEMLH
Sbjct: 241 KYADALQKIIQERALTVNYKQNLIEVRADKQEAVFENLDKPGETQVISYEMLH 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,377,723
Number of extensions: 1438597
Number of successful extensions: 4688
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4684
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535464.1| PREDICTED: similar to sulfide dehydrogenase lik... 549 e-156
Alignment gi|XP_861110.1| PREDICTED: similar to sulfide dehydrogenase lik... 549 e-156
Alignment gi|XP_850272.1| PREDICTED: similar to sulfide dehydrogenase lik... 549 e-156
Alignment gi|XP_861057.1| PREDICTED: similar to sulfide dehydrogenase lik... 526 e-149
Alignment gi|XP_861030.1| PREDICTED: similar to sulfide dehydrogenase lik... 253 2e-67
Alignment gi|XP_861142.1| PREDICTED: similar to sulfide dehydrogenase lik... 154 1e-37
>ref|XP_535464.1| PREDICTED: similar to sulfide dehydrogenase like isoform 1 [Canis
familiaris].
Length = 450
Score = 549 bits (1414), Expect = e-156
Identities = 270/293 (92%), Positives = 281/293 (95%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LAT SGPR RLFACFLRLGTQQ SPLQLHTG +LAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTPLATAVSGPRARLFACFLRLGTQQASPLQLHTGASLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGA+NVA+VEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARVV+
Sbjct: 61 RMKRRVGADNVAVVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD GKEISY+YLIIALGIQLDYEKIKGLPEGFDHPKIGSNYS +TVEKTWK
Sbjct: 121 LNPDKNCIHTDTGKEISYKYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTG+RSKANIIFNTSLG IFGVK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGTIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYA ALQEIIRERNLT+N +QNLIEVRAD+QEAVFENLDKPGETQ+ISYEMLH
Sbjct: 241 KYAAALQEIIRERNLTVNYKQNLIEVRADRQEAVFENLDKPGETQVISYEMLH 293
>ref|XP_861110.1| PREDICTED: similar to sulfide dehydrogenase like isoform 5 [Canis
familiaris].
Length = 450
Score = 549 bits (1414), Expect = e-156
Identities = 270/293 (92%), Positives = 281/293 (95%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LAT SGPR RLFACFLRLGTQQ SPLQLHTG +LAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTPLATAVSGPRARLFACFLRLGTQQASPLQLHTGASLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGA+NVA+VEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARVV+
Sbjct: 61 RMKRRVGADNVAVVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD GKEISY+YLIIALGIQLDYEKIKGLPEGFDHPKIGSNYS +TVEKTWK
Sbjct: 121 LNPDKNCIHTDTGKEISYKYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTG+RSKANIIFNTSLG IFGVK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGTIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYA ALQEIIRERNLT+N +QNLIEVRAD+QEAVFENLDKPGETQ+ISYEMLH
Sbjct: 241 KYAAALQEIIRERNLTVNYKQNLIEVRADRQEAVFENLDKPGETQVISYEMLH 293
>ref|XP_850272.1| PREDICTED: similar to sulfide dehydrogenase like isoform 2 [Canis
familiaris].
Length = 450
Score = 549 bits (1414), Expect = e-156
Identities = 270/293 (92%), Positives = 281/293 (95%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LAT SGPR RLFACFLRLGTQQ SPLQLHTG +LAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTPLATAVSGPRARLFACFLRLGTQQASPLQLHTGASLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGA+NVA+VEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARVV+
Sbjct: 61 RMKRRVGADNVAVVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD GKEISY+YLIIALGIQLDYEKIKGLPEGFDHPKIGSNYS +TVEKTWK
Sbjct: 121 LNPDKNCIHTDTGKEISYKYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTG+RSKANIIFNTSLG IFGVK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGTIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYA ALQEIIRERNLT+N +QNLIEVRAD+QEAVFENLDKPGETQ+ISYEMLH
Sbjct: 241 KYAAALQEIIRERNLTVNYKQNLIEVRADRQEAVFENLDKPGETQVISYEMLH 293
>ref|XP_861057.1| PREDICTED: similar to sulfide dehydrogenase like isoform 4 [Canis
familiaris].
Length = 508
Score = 526 bits (1355), Expect = e-149
Identities = 270/330 (81%), Positives = 281/330 (85%), Gaps = 37/330 (11%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LAT SGPR RLFACFLRLGTQQ SPLQLHTG +LAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTPLATAVSGPRARLFACFLRLGTQQASPLQLHTGASLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGA+NVA+VEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARVV+
Sbjct: 61 RMKRRVGADNVAVVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD GKEISY+YLIIALGIQLDYEKIKGLPEGFDHPKIGSNYS +TVEKTWK
Sbjct: 121 LNPDKNCIHTDTGKEISYKYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRK---------------------- 809
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKLSKPMPPPVPTLWGIKEQFKSL 240
Query: 810 ------TGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNLTIN*QQNLIEVRADKQE 971
TG+RSKANIIFNTSLG IFGVKKYA ALQEIIRERNLT+N +QNLIEVRAD+QE
Sbjct: 241 FLFLRNTGKRSKANIIFNTSLGTIFGVKKYAAALQEIIRERNLTVNYKQNLIEVRADRQE 300
Query: 972 AVFENLDKPGETQLIS---------YEMLH 1034
AVFENLDKPGETQ+IS YEMLH
Sbjct: 301 AVFENLDKPGETQVISVSGEIGAQLYEMLH 330
>ref|XP_861030.1| PREDICTED: similar to sulfide dehydrogenase like isoform 3 [Canis
familiaris].
Length = 143
Score = 253 bits (647), Expect = 2e-67
Identities = 123/135 (91%), Positives = 127/135 (94%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MT LAT SGPR RLFACFLRLGTQQ SPLQLHTG +LAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTPLATAVSGPRARLFACFLRLGTQQASPLQLHTGASLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGA+NVA+VEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARVV+
Sbjct: 61 RMKRRVGADNVAVVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVE 120
Query: 516 LNPDKNCIHTDNGKE 560
LNPDKNCIHTD GKE
Sbjct: 121 LNPDKNCIHTDTGKE 135
>ref|XP_861142.1| PREDICTED: similar to sulfide dehydrogenase like isoform 6 [Canis
familiaris].
Length = 242
Score = 154 bits (390), Expect = 1e-37
Identities = 77/85 (90%), Positives = 82/85 (96%)
Frame = +3
Query: 780 MYLSEAYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNLTIN*QQNLIEVRA 959
MYLSEAYFRKTG+RSKANIIFNTSLG IFGVKKYA ALQEIIRERNLT+N +QNLIEVRA
Sbjct: 1 MYLSEAYFRKTGKRSKANIIFNTSLGTIFGVKKYAAALQEIIRERNLTVNYKQNLIEVRA 60
Query: 960 DKQEAVFENLDKPGETQLISYEMLH 1034
D+QEAVFENLDKPGETQ+ISYEMLH
Sbjct: 61 DRQEAVFENLDKPGETQVISYEMLH 85
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,353,505
Number of extensions: 1486087
Number of successful extensions: 4818
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4811
Number of HSP's successfully gapped: 6
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067022.1| sulfide:quinone oxidoreductase, mitochondrial p... 531 e-151
>ref|NP_067022.1| sulfide:quinone oxidoreductase, mitochondrial precursor [Homo
sapiens].
Length = 450
Score = 531 bits (1369), Expect = e-151
Identities = 262/293 (89%), Positives = 277/293 (94%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
M L V SGPR +LFAC LRLGTQQV PLQLHTG + AA+NHYEVLVLGGGSGGITMAA
Sbjct: 1 MVPLVAVVSGPRAQLFACLLRLGTQQVGPLQLHTGASHAARNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKR+VGAENVAIVEPSERHFYQPIWTLVGAG KQLSSSGRPTASVIPSGVEWIKARV +
Sbjct: 61 RMKRKVGAENVAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVTE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPDKNCIHTD+ ++ISYRYLIIALGIQLDYEKIKGLPEGF HPKIGSNYS +TVEKTWK
Sbjct: 121 LNPDKNCIHTDDDEKISYRYLIIALGIQLDYEKIKGLPEGFAHPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTG+RSKANIIFNTSLGAIFGVK
Sbjct: 181 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRSKANIIFNTSLGAIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYADALQEII+ERNLT+N ++NLIEVRADKQEAVFENLDKPGETQ+ISYEMLH
Sbjct: 241 KYADALQEIIQERNLTVNYKKNLIEVRADKQEAVFENLDKPGETQVISYEMLH 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,462,116
Number of extensions: 1462033
Number of successful extensions: 4785
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4778
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067482.4| sulfide:quinone oxidoreductase, mitochondrial p... 492 e-139
Alignment gi|NP_001155975.1| sulfide:quinone oxidoreductase, mitochondria... 492 e-139
>ref|NP_067482.4| sulfide:quinone oxidoreductase, mitochondrial precursor [Mus
musculus].
Length = 450
Score = 492 bits (1266), Expect = e-139
Identities = 243/293 (82%), Positives = 261/293 (89%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
M L TV S PR RLFACFLRLGTQQ PLQLHTG AKNHYEVLVLGGG+GGITMA
Sbjct: 1 MAPLVTVVSSPRARLFACFLRLGTQQAGPLQLHTGACCTAKNHYEVLVLGGGAGGITMAT 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGAENVAIVEPSERHFYQPIWTLVGAG K+LS S R T SVIPSGV+WI+ RV +
Sbjct: 61 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGAKELSLSVRSTLSVIPSGVQWIQDRVAE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPD+NCI TD+GKEISYRYLIIALGIQLDYEKIKGLPEGF +PKIGSNYS +TVEKTWK
Sbjct: 121 LNPDENCIRTDSGKEISYRYLIIALGIQLDYEKIKGLPEGFAYPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQ FKEGNA+FTFPNTPVKCAGAPQKIMYLSEAYFRKTG+R KANIIFNT+LG IFGVK
Sbjct: 181 ALQGFKEGNALFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRPKANIIFNTALGTIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYADALQEIIRER++++N + NLIEVR DKQEAVFE LDKPGET +I YEMLH
Sbjct: 241 KYADALQEIIRERDVSVNYKHNLIEVRPDKQEAVFEILDKPGETHVIPYEMLH 293
>ref|NP_001155975.1| sulfide:quinone oxidoreductase, mitochondrial precursor [Mus
musculus].
Length = 450
Score = 492 bits (1266), Expect = e-139
Identities = 243/293 (82%), Positives = 261/293 (89%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
M L TV S PR RLFACFLRLGTQQ PLQLHTG AKNHYEVLVLGGG+GGITMA
Sbjct: 1 MAPLVTVVSSPRARLFACFLRLGTQQAGPLQLHTGACCTAKNHYEVLVLGGGAGGITMAT 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGAENVAIVEPSERHFYQPIWTLVGAG K+LS S R T SVIPSGV+WI+ RV +
Sbjct: 61 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGAKELSLSVRSTLSVIPSGVQWIQDRVAE 120
Query: 516 LNPDKNCIHTDNGKEISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWK 695
LNPD+NCI TD+GKEISYRYLIIALGIQLDYEKIKGLPEGF +PKIGSNYS +TVEKTWK
Sbjct: 121 LNPDENCIRTDSGKEISYRYLIIALGIQLDYEKIKGLPEGFAYPKIGSNYSVKTVEKTWK 180
Query: 696 ALQDFKEGNAIFTFPNTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVK 875
ALQ FKEGNA+FTFPNTPVKCAGAPQKIMYLSEAYFRKTG+R KANIIFNT+LG IFGVK
Sbjct: 181 ALQGFKEGNALFTFPNTPVKCAGAPQKIMYLSEAYFRKTGKRPKANIIFNTALGTIFGVK 240
Query: 876 KYADALQEIIRERNLTIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
KYADALQEIIRER++++N + NLIEVR DKQEAVFE LDKPGET +I YEMLH
Sbjct: 241 KYADALQEIIRERDVSVNYKHNLIEVRPDKQEAVFEILDKPGETHVIPYEMLH 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,239,175
Number of extensions: 1208201
Number of successful extensions: 3736
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3728
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001924385.3| PREDICTED: sulfide:quinone oxidoreductase, m... 312 2e-85
Alignment gi|XP_001924712.2| PREDICTED: sulfide:quinone oxidoreductase, m... 273 1e-73
Alignment gi|XP_003121599.1| PREDICTED: hypothetical protein LOC100521536... 102 3e-22
>ref|XP_001924385.3| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial [Sus
scrofa].
Length = 332
Score = 312 bits (799), Expect = 2e-85
Identities = 155/158 (98%), Positives = 157/158 (99%)
Frame = +3
Query: 561 ISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWKALQDFKEGNAIFTFP 740
ISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWKALQDFKEGNAIFTFP
Sbjct: 18 ISYRYLIIALGIQLDYEKIKGLPEGFDHPKIGSNYSFRTVEKTWKALQDFKEGNAIFTFP 77
Query: 741 NTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNL 920
NTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNL
Sbjct: 78 NTPVKCAGAPQKIMYLSEAYFRKTGRRSKANIIFNTSLGAIFGVKKYADALQEIIRERNL 137
Query: 921 TIN*QQNLIEVRADKQEAVFENLDKPGETQLISYEMLH 1034
TIN +QNLIEVRADKQEAVFENLDKPGETQ+ISYEMLH
Sbjct: 138 TINYKQNLIEVRADKQEAVFENLDKPGETQVISYEMLH 175
>ref|XP_001924712.2| PREDICTED: sulfide:quinone oxidoreductase, mitochondrial-like [Sus
scrofa].
Length = 173
Score = 273 bits (698), Expect = 1e-73
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = +3
Query: 156 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 335
MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA
Sbjct: 1 MTSLATVASGPRTRLFACFLRLGTQQVSPLQLHTGTNLAAKNHYEVLVLGGGSGGITMAA 60
Query: 336 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 515
RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD
Sbjct: 61 RMKRRVGAENVAIVEPSERHFYQPIWTLVGAGIKQLSSSGRPTASVIPSGVEWIKARVVD 120
Query: 516 LNPDKNCIHTDNGKE 560
LNPDKNCIHTDNGKE
Sbjct: 121 LNPDKNCIHTDNGKE 135
>ref|XP_003121599.1| PREDICTED: hypothetical protein LOC100521536 [Sus scrofa].
Length = 235
Score = 102 bits (254), Expect = 3e-22
Identities = 51/66 (77%), Positives = 55/66 (83%), Gaps = 6/66 (9%)
Frame = -1
Query: 180 MPQWP-----VRSSLGWIR-PKARRASGHSVGAAKPAAPRWGLQPQLGHHPLPGRRLEAG 19
+P W +RS+ G+ PKARRASGHSVGAAKPAAPRWGLQPQLGHHPLPGRRLEAG
Sbjct: 79 VPAWSPSPTGLRSAEGYASYPKARRASGHSVGAAKPAAPRWGLQPQLGHHPLPGRRLEAG 138
Query: 18 RASPTP 1
RASPTP
Sbjct: 139 RASPTP 144
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,291,215
Number of extensions: 932696
Number of successful extensions: 3146
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3138
Number of HSP's successfully gapped: 3
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002843
(1035 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 500 e-139
>Sscrofa_Chr01
|| Length = 315321322
Score = 500 bits (252), Expect = e-139
Identities = 252/252 (100%)
Strand = Plus / Plus
Query: 138 gcctgatccaacccaaagatgacctcactggccactgtggcatctggcccccgcacccgg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140671382 gcctgatccaacccaaagatgacctcactggccactgtggcatctggcccccgcacccgg 140671441
Query: 198 ctctttgcctgcttcctcaggctgggcactcaacaggtcagtccactccagctgcacaca 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140671442 ctctttgcctgcttcctcaggctgggcactcaacaggtcagtccactccagctgcacaca 140671501
Query: 258 gggaccaacctcgcagccaagaaccactatgaagtgctagtgctgggcgggggcagtggt 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140671502 gggaccaacctcgcagccaagaaccactatgaagtgctagtgctgggcgggggcagtggt 140671561
Query: 318 gggatcaccatggccgcccgcatgaagaggagagtgggtgcagagaatgtggccatcgtt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140671562 gggatcaccatggccgcccgcatgaagaggagagtgggtgcagagaatgtggccatcgtt 140671621
Query: 378 gagcccagcgag 389
||||||||||||
Sbjct: 140671622 gagcccagcgag 140671633
Score = 396 bits (200), Expect = e-108
Identities = 209/212 (98%)
Strand = Plus / Plus
Query: 808 agacgggaaggagatccaaggccaatatcattttcaacacatcccttggagcaatttttg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140696905 agacgggaaggagatccaaggccaatatcattttcaacacatcccttggagcaatttttg 140696964
Query: 868 gggtcaagaagtatgcagatgccctgcaggagattatccgggagaggaacctcactatta 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140696965 gggtcaagaagtatgcagatgccctgcaggagattatccgggagaggaacctcactatta 140697024
Query: 928 actaacagcaaaacctcattgaagtccgagctgataaacaagaggctgtttttgagaatc 987
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140697025 actacaagcaaaacctcattgaagtccgagctgataaacaagaggctgtttttgagaatc 140697084
Query: 988 tggacaaacctggagagactcaattgatttcg 1019
||||||||||||||||||||||| ||||||||
Sbjct: 140697085 tggacaaacctggagagactcaagtgatttcg 140697116
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 613 agatcaaaggcctccctgagggttttgaccatcccaaaatagggtccaattactcattta 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140423112 agatcaaaggcctccctgagggttttgaccatcccaaaatagggtccaattactcattta 140423171
Query: 673 ggacagtagagaagacatggaaagcgctgcaggacttcaaggagggtaatgcaatcttta 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140423172 ggacagtagagaagacatggaaagcgctgcaggacttcaaggagggtaatgcaatcttta 140423231
Query: 733 ccttccccaatactccagtaaagtgtgccggagccccacagaagatcatgtatttatcag 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140423232 ccttccccaatactccagtaaagtgtgccggagccccacagaagatcatgtatttatcag 140423291
Query: 793 aagcctatttcaggaag 809
|||||||||||||||||
Sbjct: 140423292 aagcctatttcaggaag 140423308
Score = 391 bits (197), Expect = e-106
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 613 agatcaaaggcctccctgagggttttgaccatcccaaaatagggtccaattactcattta 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140694891 agatcaaaggcctccctgagggttttgaccatcccaaaatagggtccaattactcattta 140694950
Query: 673 ggacagtagagaagacatggaaagcgctgcaggacttcaaggagggtaatgcaatcttta 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140694951 ggacagtagagaagacatggaaagcgctgcaggacttcaaggagggtaatgcaatcttta 140695010
Query: 733 ccttccccaatactccagtaaagtgtgccggagccccacagaagatcatgtatttatcag 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140695011 ccttccccaatactccagtaaagtgtgccggagccccacagaagatcatgtatttatcag 140695070
Query: 793 aagcctatttcaggaag 809
|||||||||||||||||
Sbjct: 140695071 aagcctatttcaggaag 140695087
Score = 389 bits (196), Expect = e-105
Identities = 208/212 (98%)
Strand = Plus / Plus
Query: 808 agacgggaaggagatccaaggccaatatcattttcaacacatcccttggagcaatttttg 867
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140425124 agacggggaggagatccaaggccaatatcattttcaacacatcccttggagcaatttttg 140425183
Query: 868 gggtcaagaagtatgcagatgccctgcaggagattatccgggagaggaacctcactatta 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140425184 gggtcaagaagtatgcagatgccctgcaggagattatccgggagaggaacctcactatta 140425243
Query: 928 actaacagcaaaacctcattgaagtccgagctgataaacaagaggctgtttttgagaatc 987
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140425244 actacaagcaaaacctcattgaagtccgagctgataaacaagaggctgtttttgagaatc 140425303
Query: 988 tggacaaacctggagagactcaattgatttcg 1019
||||||||||||||||||||||| ||||||||
Sbjct: 140425304 tggacaaacctggagagactcaagtgatttcg 140425335
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 388 agagacatttctaccagcccatttggaccctggtgggtgctggtatcaagcagttgtcct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140674506 agagacatttctaccagcccatttggaccctggtgggtgctggtatcaagcagttgtcct 140674565
Query: 448 catctggccgacccacagcgagtgtgattccatctggtgtagaatggatcaaagctagag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140674566 catctggccgacccacagcgagtgtgattccatctggtgtagaatggatcaaagctagag 140674625
Query: 508 tggttgatctgaacccagacaagaactgcatccacacagacaatggcaaggag 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140674626 tggttgatctgaacccagacaagaactgcatccacacagacaatggcaaggag 140674678
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 559 agatctcctacagataccttatcattgcccttggaatccagctggactatgagaag 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140682975 agatctcctacagataccttatcattgcccttggaatccagctggactatgagaag 140683030
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,002,183
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 7
Length of query: 1035
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1014
Effective length of database: 2,808,413,156
Effective search space: 2847730940184
Effective search space used: 2847730940184
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)