Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039947.1| sialic acid synthase [Bos taurus]. 560 e-160
>ref|NP_001039947.1| sialic acid synthase [Bos taurus].
Length = 359
Score = 560 bits (1443), Expect = e-160
Identities = 272/282 (96%), Positives = 275/282 (97%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGG HPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY
Sbjct: 1 MPLELELCPGRWVGGHHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQY+ELQK+AEEVGIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYKELQKYAEEVGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVK LNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKALNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPPSSCCP 957
LDKTWKGSDHSASLEPGELAELVRSVRLVE+ALGSP P
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLP 282
Score = 101 bits (251), Expect = 1e-21
Identities = 50/66 (75%), Positives = 52/66 (78%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKV+IPEG GEPKGYPP DIFSLVGK
Sbjct: 274 GSPTKQLLPCEMACNEKLGKSVVAKVRIPEGSILTLDMLTVKVGEPKGYPPEDIFSLVGK 333
Query: 1110 KVLVTI 1127
KVLVT+
Sbjct: 334 KVLVTV 339
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,619,618
Number of extensions: 1378141
Number of successful extensions: 4804
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4804
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867154.1| PREDICTED: similar to N-acetylneuraminic acid p... 546 e-162
Alignment gi|XP_538746.2| PREDICTED: similar to N-acetylneuraminic acid p... 553 e-158
Alignment gi|XP_867170.1| PREDICTED: similar to N-acetylneuraminic acid p... 149 4e-36
>ref|XP_867154.1| PREDICTED: similar to N-acetylneuraminic acid phosphate synthase
isoform 2 [Canis familiaris].
Length = 312
Score = 546 bits (1406), Expect(2) = e-162
Identities = 264/277 (95%), Positives = 270/277 (97%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDL+VAKRMIR AKECGADCAKFQKSELEY
Sbjct: 1 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLEVAKRMIRTAKECGADCAKFQKSELEY 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSH QYRELQ++A+EVGIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHEQYRELQRYAQEVGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPL PEDVNLRVI+EYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLLPEDVNLRVITEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPP 942
LDKTWKGSDHSASLEPGELAELVRSVRLV + G PP
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVGEPKGYPP 277
Score = 45.4 bits (106), Expect(2) = e-162
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +3
Query: 1059 GEPKGYPP*DIFSLVGKKVLVTI 1127
GEPKGYPP DIF LVGKKVLVT+
Sbjct: 270 GEPKGYPPEDIFGLVGKKVLVTV 292
>ref|XP_538746.2| PREDICTED: similar to N-acetylneuraminic acid phosphate synthase
isoform 1 [Canis familiaris].
Length = 359
Score = 553 bits (1426), Expect = e-158
Identities = 267/282 (94%), Positives = 274/282 (97%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDL+VAKRMIR AKECGADCAKFQKSELEY
Sbjct: 1 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLEVAKRMIRTAKECGADCAKFQKSELEY 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSH QYRELQ++A+EVGIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHEQYRELQRYAQEVGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPL PEDVNLRVI+EYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLLPEDVNLRVITEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPPSSCCP 957
LDKTWKGSDHSASLEPGELAELVRSVRLVE+A+GSP P
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVERAMGSPTKQLLP 282
Score = 99.8 bits (247), Expect = 4e-21
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKV+IPEG GEPKGYPP DIF LVGK
Sbjct: 274 GSPTKQLLPCEMACNEKLGKSVVAKVRIPEGTVLTLDMLTVKVGEPKGYPPEDIFGLVGK 333
Query: 1110 KVLVTI 1127
KVLVT+
Sbjct: 334 KVLVTV 339
>ref|XP_867170.1| PREDICTED: similar to N-acetylneuraminic acid phosphate synthase
isoform 3 [Canis familiaris].
Length = 182
Score = 149 bits (377), Expect = 4e-36
Identities = 74/81 (91%), Positives = 76/81 (93%)
Frame = +1
Query: 715 EYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAE 894
EYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAE
Sbjct: 25 EYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAE 84
Query: 895 LVRSVRLVEKALGSPPSSCCP 957
LVRSVRLVE+A+GSP P
Sbjct: 85 LVRSVRLVERAMGSPTKQLLP 105
Score = 99.8 bits (247), Expect = 4e-21
Identities = 49/66 (74%), Positives = 51/66 (77%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKV+IPEG GEPKGYPP DIF LVGK
Sbjct: 97 GSPTKQLLPCEMACNEKLGKSVVAKVRIPEGTVLTLDMLTVKVGEPKGYPPEDIFGLVGK 156
Query: 1110 KVLVTI 1127
KVLVT+
Sbjct: 157 KVLVTV 162
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,636,353
Number of extensions: 1422169
Number of successful extensions: 4842
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4839
Number of HSP's successfully gapped: 6
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061819.2| sialic acid synthase [Homo sapiens]. 561 e-160
>ref|NP_061819.2| sialic acid synthase [Homo sapiens].
Length = 359
Score = 561 bits (1446), Expect = e-160
Identities = 272/282 (96%), Positives = 276/282 (97%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELE+
Sbjct: 1 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEF 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSH QYRELQ++AEEVGIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPPSSCCP 957
LDKTWKGSDHSASLEPGELAELVRSVRLVE+ALGSP P
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLP 282
Score = 101 bits (251), Expect = 1e-21
Identities = 50/66 (75%), Positives = 52/66 (78%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKVKIPEG GEPKGYPP DIF+LVGK
Sbjct: 274 GSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGK 333
Query: 1110 KVLVTI 1127
KVLVT+
Sbjct: 334 KVLVTV 339
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,796,757
Number of extensions: 1394051
Number of successful extensions: 4703
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4702
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444409.1| sialic acid synthase [Mus musculus]. 551 e-157
>ref|NP_444409.1| sialic acid synthase [Mus musculus].
Length = 359
Score = 551 bits (1421), Expect = e-157
Identities = 265/282 (93%), Positives = 273/282 (96%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGG+HPCFIIAEIGQNHQGD+DVAKRMIR AKECGADCAKFQKSELE+
Sbjct: 1 MPLELELCPGRWVGGKHPCFIIAEIGQNHQGDIDVAKRMIRTAKECGADCAKFQKSELEF 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSH QY+ELQ +A+E+GIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYKELQSYAQEIGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPLQPED NLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLQPEDANLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPPSSCCP 957
LDKTWKGSDHSASLEPGELAELVRSVRLVE+ALGSP P
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLP 282
Score = 97.8 bits (242), Expect = 1e-20
Identities = 49/66 (74%), Positives = 50/66 (75%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKVKIP G GEPKGYPP DIF+L GK
Sbjct: 274 GSPTKQLLPCEMACNEKLGKSVVAKVKIPAGTTLTLDMLTVKVGEPKGYPPEDIFNLAGK 333
Query: 1110 KVLVTI 1127
KVLVTI
Sbjct: 334 KVLVTI 339
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,177,367
Number of extensions: 1156656
Number of successful extensions: 3665
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3664
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172068.1| sialic acid synthase [Sus scrofa]. 568 e-162
>ref|NP_001172068.1| sialic acid synthase [Sus scrofa].
Length = 359
Score = 568 bits (1465), Expect = e-162
Identities = 277/282 (98%), Positives = 277/282 (98%)
Frame = +1
Query: 112 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 291
MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY
Sbjct: 1 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEY 60
Query: 292 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 471
KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE
Sbjct: 61 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHAQYRELQKFAEEVGIFFTASGMDEMAVE 120
Query: 472 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 651
FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC
Sbjct: 121 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 180
Query: 652 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 831
FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT
Sbjct: 181 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 240
Query: 832 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPPSSCCP 957
LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSP P
Sbjct: 241 LDKTWKGSDHSASLEPGELAELVRSVRLVEKALGSPTKQLLP 282
Score = 102 bits (255), Expect = 3e-22
Identities = 52/66 (78%), Positives = 52/66 (78%)
Frame = +3
Query: 930 GLPTKQLLPCEMACNEKLGKSVVAKVKIPEGXXXXXXXXXXXXGEPKGYPP*DIFSLVGK 1109
G PTKQLLPCEMACNEKLGKSVVAKVKIPEG GEPKGYPP DIFSLVGK
Sbjct: 274 GSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTVLTLDMLTVKVGEPKGYPPEDIFSLVGK 333
Query: 1110 KVLVTI 1127
KVLVTI
Sbjct: 334 KVLVTI 339
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,742,130
Number of extensions: 889482
Number of successful extensions: 3059
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3057
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002844
(1127 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 509 e-141
>Sscrofa_Chr01
|| Length = 315321322
Score = 509 bits (257), Expect = e-141
Identities = 270/273 (98%), Gaps = 1/273 (0%)
Strand = Plus / Plus
Query: 714 ggaatatcagaagctctttcctgacattcccatagggtattctgggcatgaaacaggcat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268079615 ggaatatcagaagctctttcctgacattcccatagggtattctgggcatgaaacaggcat 268079674
Query: 774 agcaatatctgtggctgccgtggctctgggagccaaggtcttggagcgtcacataacttt 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268079675 agcaatatctgtggctgccgtggctctgggagccaaggtcttggagcgtcacataacttt 268079734
Query: 834 ggacaagacttggaaggggagtgaccactcggcctcgctggagcctggagagctggccga 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268079735 ggacaagacttggaaggggagtgaccactcggcctcgctggagcctggagagctggccga 268079794
Query: 894 gctggtgcggtctgtgcgcctcgtggagaaggccctgggctcccc-accaagcagctgct 952
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 268079795 gctggtgcggtctgtgcgcctcgtggagagggccctgggctccccaaccaagcagctgct 268079854
Query: 953 gccctgtgagatggcctgcaacgagaagctggg 985
|||||||||||||||||||||||||||| ||||
Sbjct: 268079855 gccctgtgagatggcctgcaacgagaaggtggg 268079887
Score = 478 bits (241), Expect = e-132
Identities = 241/241 (100%)
Strand = Plus / Plus
Query: 4 gtggcggggcctccgagtgggcccagctaggctgcagactgaacagaagggaggtggcgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268051416 gtggcggggcctccgagtgggcccagctaggctgcagactgaacagaagggaggtggcgg 268051475
Query: 64 cggcggtaactaggcgggtggtgccgcacgagagcacaagccgctgccatgccgctggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268051476 cggcggtaactaggcgggtggtgccgcacgagagcacaagccgctgccatgccgctggag 268051535
Query: 124 ctggagctgtgtcccggacgctgggtgggcgggcagcacccatgcttcatcattgcggag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268051536 ctggagctgtgtcccggacgctgggtgggcgggcagcacccatgcttcatcattgcggag 268051595
Query: 184 ataggccagaaccaccagggcgacctggatgtggccaagcgcatgatccgtatggccaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268051596 ataggccagaaccaccagggcgacctggatgtggccaagcgcatgatccgtatggccaag 268051655
Query: 244 g 244
|
Sbjct: 268051656 g 268051656
Score = 432 bits (218), Expect = e-118
Identities = 218/218 (100%)
Strand = Plus / Plus
Query: 242 aggagtgtggggctgattgcgccaagttccagaagagtgagctggagtataagtttaatc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268060774 aggagtgtggggctgattgcgccaagttccagaagagtgagctggagtataagtttaatc 268060833
Query: 302 ggaaagccttggagaggccgtacacttcaaagcactcctgggggaagacctacggggagc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268060834 ggaaagccttggagaggccgtacacttcaaagcactcctgggggaagacctacggggagc 268060893
Query: 362 acaaacgccacctggaattcagccacgcccagtacagggagctgcagaaattcgctgagg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268060894 acaaacgccacctggaattcagccacgcccagtacagggagctgcagaaattcgctgagg 268060953
Query: 422 aggttggcatcttcttcactgcctctggcatggatgag 459
||||||||||||||||||||||||||||||||||||||
Sbjct: 268060954 aggttggcatcttcttcactgcctctggcatggatgag 268060991
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 558 aggccgcccaatggtcatctccagtgggatgcagtcaatggacaccatgaagcaagtcta 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268074578 aggccgcccaatggtcatctccagtgggatgcagtcaatggacaccatgaagcaagtcta 268074637
Query: 618 tcagattgtgaagcccctcaaccccaacttctgcttcctccagtgcaccagcgcgtaccc 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268074638 tcagattgtgaagcccctcaaccccaacttctgcttcctccagtgcaccagcgcgtaccc 268074697
Query: 678 actccaacctgaggacgtcaacctgcgtgtcatctcgg 715
||||||||||||||||||||||||||||||||||||||
Sbjct: 268074698 actccaacctgaggacgtcaacctgcgtgtcatctcgg 268074735
Score = 266 bits (134), Expect = 2e-68
Identities = 145/149 (97%)
Strand = Plus / Plus
Query: 979 agctgggcaagtctgtggtggccaaagtgaaaattccggaaggcactgttctaacactgg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268082054 agctgggcaagtctgtggtggccaaagtgaaaattccggaaggcactgttctaacactgg 268082113
Query: 1039 acatgctcactgtgaangtgggtgaacccaaaggctaccctccctgagacatctttagtc 1098
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 268082114 acatgctcactgtgaaggtgggtgaacccaaaggctaccctcctgaagacatctttagtc 268082173
Query: 1099 tggtgggcaagaaggtcctggtcactatt 1127
|||||||||||||||||||||||||||||
Sbjct: 268082174 tggtgggcaagaaggtcctggtcactatt 268082202
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 458 agatggcagttgagtttctgcatgaactgaatgttccatttttcaaagttggatctgggg 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268073267 agatggcagttgagtttctgcatgaactgaatgttccatttttcaaagttggatctgggg 268073326
Query: 518 acactaataatttcccttatctggaaaagacagccaaaaaagg 560
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268073327 acactaataatttcccttatctggaaaagacagccaaaaaagg 268073369
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,547,718
Number of extensions: 170
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 6
Length of query: 1127
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1106
Effective length of database: 2,808,413,156
Effective search space: 3106104950536
Effective search space used: 3106104950536
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)