Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698598.1| PREDICTED: deleted in malignant brain tumors... 409 e-114
Alignment gi|XP_588646.5| PREDICTED: deleted in malignant brain tumors 1 ... 409 e-114
Alignment gi|NP_001039529.1| oncoprotein-induced transcript 3 protein pre... 75 1e-13
Alignment gi|NP_776398.1| zona pellucida sperm-binding protein 2 precurso... 60 5e-09
Alignment gi|NP_776638.1| uromodulin precursor [Bos taurus]. 57 4e-08
Alignment gi|NP_776400.1| zona pellucida sperm-binding protein 4 precurso... 54 3e-07
Alignment gi|XP_002686279.1| PREDICTED: transforming growth factor, beta ... 51 2e-06
Alignment gi|XP_001253072.1| PREDICTED: transforming growth factor, beta ... 51 2e-06
>ref|XP_002698598.1| PREDICTED: deleted in malignant brain tumors 1, partial [Bos taurus].
Length = 1333
Score = 409 bits (1052), Expect = e-114
Identities = 205/294 (69%), Positives = 233/294 (79%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
ITS+ VTF IPYS CGTIQ+VDNDTITYSN L+A S II RK+DL ++VSC+MLQNTW
Sbjct: 1040 ITSSLVTFVIPYSGCGTIQQVDNDTITYSNFLKATASRSIINRKRDLQIHVSCKMLQNTW 1099
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
VNTVY+ NDT++++N QYGNFDVNISF+TSSSFLYPV SSPYYVDLNQNLYLQAEIL +N
Sbjct: 1100 VNTVYVTNDTIDIENTQYGNFDVNISFYTSSSFLYPVTSSPYYVDLNQNLYLQAEILRSN 1159
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
SLALFVDTCVASP PNDFT+LTYDLI+SGCVKDETY+SY QPS IVRFKFSSFHFL+R
Sbjct: 1160 PSLALFVDTCVASPNPNDFTSLTYDLIQSGCVKDETYRSYHQPSSNIVRFKFSSFHFLNR 1219
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQTLHAEKRSL 721
FPSVYL+CKMVVCRA+D KRDV SYQEKVDVVLGPIQLQ +KR+L
Sbjct: 1220 FPSVYLKCKMVVCRAYDPFSRCNRGCIVRAKRDVSSYQEKVDVVLGPIQLQA-SPQKRNL 1278
Query: 722 DQPAVDLEEKASAQGSYDGAAISAGIFXXXXXXXXXFTLGRRGRAADGQPLISK 883
D+ VD+EE+ S +GSY A I AG+ F LGRR RAA QP +K
Sbjct: 1279 DRQVVDIEEETSTRGSYHTATIFAGVLVVMVVAVAAFALGRRVRAACAQPPSTK 1332
>ref|XP_588646.5| PREDICTED: deleted in malignant brain tumors 1 [Bos taurus].
Length = 1719
Score = 409 bits (1052), Expect = e-114
Identities = 205/294 (69%), Positives = 233/294 (79%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
ITS+ VTF IPYS CGTIQ+VDNDTITYSN L+A S II RK+DL ++VSC+MLQNTW
Sbjct: 1426 ITSSLVTFVIPYSGCGTIQQVDNDTITYSNFLKATASRSIINRKRDLQIHVSCKMLQNTW 1485
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
VNTVY+ NDT++++N QYGNFDVNISF+TSSSFLYPV SSPYYVDLNQNLYLQAEIL +N
Sbjct: 1486 VNTVYVTNDTIDIENTQYGNFDVNISFYTSSSFLYPVTSSPYYVDLNQNLYLQAEILRSN 1545
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
SLALFVDTCVASP PNDFT+LTYDLI+SGCVKDETY+SY QPS IVRFKFSSFHFL+R
Sbjct: 1546 PSLALFVDTCVASPNPNDFTSLTYDLIQSGCVKDETYRSYHQPSSNIVRFKFSSFHFLNR 1605
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQTLHAEKRSL 721
FPSVYL+CKMVVCRA+D KRDV SYQEKVDVVLGPIQLQ +KR+L
Sbjct: 1606 FPSVYLKCKMVVCRAYDPFSRCNRGCIVRAKRDVSSYQEKVDVVLGPIQLQA-SPQKRNL 1664
Query: 722 DQPAVDLEEKASAQGSYDGAAISAGIFXXXXXXXXXFTLGRRGRAADGQPLISK 883
D+ VD+EE+ S +GSY A I AG+ F LGRR RAA QP +K
Sbjct: 1665 DRQVVDIEEETSTRGSYHTATIFAGVLVVMVVAVAAFALGRRVRAACAQPPSTK 1718
>ref|NP_001039529.1| oncoprotein-induced transcript 3 protein precursor [Bos taurus].
Length = 547
Score = 75.1 bits (183), Expect = 1e-13
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Frame = +2
Query: 11 TQVTFTIPYSSCGTIQRVDNDTITYSNSLRA------AVSSGIIKRKKDLNMYVSCRMLQ 172
T V +CGT+ V ND I SN + S II R L + V+C +
Sbjct: 301 THVNILFSLKTCGTVVDVVNDKIVASNLVTGLPKQTPGSSGDIIIRTSKLLIPVTCEFPR 360
Query: 173 NTWVNTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQA 343
++ Y+ N LE+ + +G F + F F P R + + L +LY
Sbjct: 361 LYTISEGYVPNLRNTPLEIMSRSHGIFPFTLEIFKDHEFEEPYREALPTLKLRDSLYFGI 420
Query: 344 E-ILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
E ++H N L V++C A+P + Y +I+ GCV D++ + Y+ F+
Sbjct: 421 EPLVHVNG-LESLVESCFATPTSKIDEIMKYYIIQDGCVSDDSVKQYTSRDHLAKHFQVP 479
Query: 521 SFHFLSR-FPSVYLQCKMVVCRAFD 592
F F+ + V+L C+++VC D
Sbjct: 480 VFKFVGKDHKEVFLHCRVLVCGMLD 504
>ref|NP_776398.1| zona pellucida sperm-binding protein 2 precursor [Bos taurus].
Length = 713
Score = 59.7 bits (143), Expect = 5e-09
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 18/206 (8%)
Frame = +2
Query: 17 VTFTIPYSSCGTIQRVDNDTITYSNSLRAA---VSSGIIKRKKDLNMYVSCRMLQNTWVN 187
V F IP + CGT + +N + Y N + A + I R + M V C + +
Sbjct: 410 VKFHIPLNGCGTRHKFENGKVIYENEIHALWADLPPSTISRDSEFRMTVRCYYSSSNMLI 469
Query: 188 TVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYV--DLNQNLYLQAEILH-A 358
+ + V +V+ G + + + +S+L P Y V L Q +YL+ +L+
Sbjct: 470 NTNVESLPPPVASVKPGPLALTLQTYPDNSYLQPYGDKDYPVVRYLRQPIYLEVRVLNRT 529
Query: 359 NASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKD-ETYQSYSQPSPRIV-------RFK 514
+ ++ L +D C A+ + + +++I GC + + +++ P V RF
Sbjct: 530 DPNIKLVLDDCWATSTMDPASLPQWNIIVDGCEYNLDNHRTTFHPVGSSVAYPNHYQRFA 589
Query: 515 FSSFHFLSRFPS----VYLQCKMVVC 580
+F F+S P+ VY C ++C
Sbjct: 590 VKTFAFVSEDPAFSHLVYFHCSALIC 615
>ref|NP_776638.1| uromodulin precursor [Bos taurus].
Length = 643
Score = 56.6 bits (135), Expect = 4e-08
Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 6/185 (3%)
Frame = +2
Query: 44 CGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDTLEVQ 223
CGT+ + TYSN+L A II R ++ + +C + V+ +
Sbjct: 391 CGTVMTRNETHATYSNTLYLA--DEIIIRDLNIRINFACSYPLDMKVSLKTSLQPMVSAL 448
Query: 224 NVQYGN---FDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LALFVDTC 391
N+ G F V ++ F S ++ P + S + LY+ + + S L + C
Sbjct: 449 NISMGGTGTFTVRMALFQSPAYTQPYQGSSVTLSTEAFLYVGTMLDGGDLSRFVLLMTNC 508
Query: 392 VASPYPNDFTTLTYDLIRSGCVK--DETYQSYSQPSPRIVRFKFSSFHFLSRFPSVYLQC 565
A+P N L Y +I+ C + D T Q RF F F + VYL C
Sbjct: 509 YATPSSNATDPLKYFIIQDRCPRAADSTIQVEENGESPQGRFSVQMFRFAGNYDLVYLHC 568
Query: 566 KMVVC 580
++ +C
Sbjct: 569 EVYLC 573
>ref|NP_776400.1| zona pellucida sperm-binding protein 4 precursor [Bos taurus].
Length = 534
Score = 53.9 bits (128), Expect = 3e-07
Identities = 55/219 (25%), Positives = 84/219 (38%), Gaps = 26/219 (11%)
Frame = +2
Query: 5 TSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAA-----VSSGIIKRKKDLNMYVSCRML 169
T T V F P+++CGT +++ Y N L AA S G I R + VSC
Sbjct: 229 THTFVLFRFPFTTCGTTKQITGKQAVYENELVAARDVRTWSRGSITRDSTFRLQVSCSYS 288
Query: 170 QNTWVNTVYIANDTL--EVQNVQYGNFDVNISFFTSSSF--LYPVRSSPYYVDLNQNLYL 337
++ V + TL + Q GN + + + Y P L +Y+
Sbjct: 289 ASSSALPVNVQVLTLPPPLPETQPGNLTLELKIAKDKRYRSYYTASDYPVVKLLRDPIYV 348
Query: 338 QAEI-LHANASLALFVDTCVASPYPNDFTTLTYDLIRSGC-VKDETYQSYSQP------- 490
+ I + SL L +D C A+P + + L+ +GC + YQ+ P
Sbjct: 349 EVSIHQRTDPSLELRLDQCWATPGADALLQPQWPLLVNGCPYTGDNYQTKLIPVWEASDL 408
Query: 491 --SPRIVRFKFSSFHFLSRFPS------VYLQCKMVVCR 583
RF S+F F+ VYL C VC+
Sbjct: 409 PFPSHYQRFSISTFSFVDSVAKRALKGPVYLHCSASVCQ 447
>ref|XP_002686279.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Frame = +2
Query: 239 NFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANASLALFVDTCVASPYPNDF 418
N N+ + + FL P + + V N ++Y++ + A+ L + TC SPY N
Sbjct: 597 NVTFNMELYNTDLFLVPSQGV-FSVAENGHVYVEVSVTKADQELGFAIQTCFISPYSNPD 655
Query: 419 TTLTYDLIRSGCVKDETYQSYSQ-------PSPRIVRFKFSSFHFLSRFPS--VYLQCKM 571
Y +I + C KDE+ + Y+ P I + +F SF F F + ++LQC++
Sbjct: 656 RMSDYTIIENICPKDESVKFYNPKRVHFPIPQAEIDKKRF-SFVFKPVFNTSLLFLQCEL 714
Query: 572 VVC 580
+C
Sbjct: 715 TLC 717
>ref|XP_001253072.1| PREDICTED: transforming growth factor, beta receptor III [Bos
taurus].
Length = 858
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Frame = +2
Query: 239 NFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANASLALFVDTCVASPYPNDF 418
N N+ + + FL P + + V N ++Y++ + A+ L + TC SPY N
Sbjct: 597 NVTFNMELYNTDLFLVPSQGV-FSVAENGHVYVEVSVTKADQELGFAIQTCFISPYSNPD 655
Query: 419 TTLTYDLIRSGCVKDETYQSYSQ-------PSPRIVRFKFSSFHFLSRFPS--VYLQCKM 571
Y +I + C KDE+ + Y+ P I + +F SF F F + ++LQC++
Sbjct: 656 RMSDYTIIENICPKDESVKFYNPKRVHFPIPQAEIDKKRF-SFVFKPVFNTSLLFLQCEL 714
Query: 572 VVC 580
+C
Sbjct: 715 TLC 717
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,678,860
Number of extensions: 1424549
Number of successful extensions: 6772
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6690
Number of HSP's successfully gapped: 8
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544052.2| PREDICTED: similar to deleted in malignant brai... 372 e-103
Alignment gi|XP_866008.1| PREDICTED: similar to CUB and zona pellucida-li... 186 5e-47
Alignment gi|XP_544054.2| PREDICTED: similar to CUB and zona pellucida-li... 186 5e-47
Alignment gi|XP_544053.2| PREDICTED: similar to deleted in malignant brai... 99 6e-21
Alignment gi|XP_546162.2| PREDICTED: similar to oncoprotein-induced trans... 77 4e-14
Alignment gi|XP_546475.2| PREDICTED: similar to Alpha-tectorin precursor ... 65 2e-10
Alignment gi|NP_001003304.1| zona pellucida sperm-binding protein 2 precu... 62 1e-09
Alignment gi|NP_001003003.1| uromodulin precursor [Canis lupus familiaris]. 56 7e-08
Alignment gi|XP_547284.2| PREDICTED: similar to TGF-beta receptor type II... 55 2e-07
Alignment gi|XP_544021.2| PREDICTED: similar to tectorin beta [Canis fami... 54 3e-07
>ref|XP_544052.2| PREDICTED: similar to deleted in malignant brain tumors 1 isoform a
precursor [Canis familiaris].
Length = 771
Score = 372 bits (954), Expect = e-103
Identities = 178/231 (77%), Positives = 204/231 (88%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT++QVTF IPYS CGTI++VDNDTITYSN L+ AV S IIKRKKDL++++SC+MLQNTW
Sbjct: 537 ITASQVTFKIPYSGCGTIEQVDNDTITYSNFLKVAVPSAIIKRKKDLHIHISCKMLQNTW 596
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
V+T+YI ND +EV+ VQYGNFDVNISF+TSSSFLYPV S+PYYVDLNQNLYLQA+I+H++
Sbjct: 597 VDTMYITNDNIEVKEVQYGNFDVNISFYTSSSFLYPVTSTPYYVDLNQNLYLQAKIIHSD 656
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
ASLALFVDTCVASPY NDFT+LTYDLIRSGCVKD+TYQSYSQPSPRI RFKFSSF+FL R
Sbjct: 657 ASLALFVDTCVASPYSNDFTSLTYDLIRSGCVKDQTYQSYSQPSPRIARFKFSSFYFLKR 716
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQ 694
FPSVYLQCKMVVCRA D KRDVGSYQEKVDV++GPIQL+
Sbjct: 717 FPSVYLQCKMVVCRANDSFSRCRRGCIMRSKRDVGSYQEKVDVIVGPIQLR 767
>ref|XP_866008.1| PREDICTED: similar to CUB and zona pellucida-like domains 1 isoform
2 [Canis familiaris].
Length = 384
Score = 186 bits (471), Expect = 5e-47
Identities = 96/231 (41%), Positives = 146/231 (63%), Gaps = 2/231 (0%)
Frame = +2
Query: 8 STQVTFTIPYSSCGTIQRVDNDTITYSN--SLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
S + F+IP CGTI++V++ ++TY+N +L + +S +I R+K L + + C M QN+
Sbjct: 89 SNVIDFSIPLDGCGTIKKVEDHSVTYTNIITLNPSPTSEVITRQKHLQIILKCEMEQNST 148
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
V +YI D + G ++ +++ F SSSF P+ SPYYVDLNQ L++Q + ++
Sbjct: 149 VEMMYITEDDIIQNESALGKYNTSMALFESSSFAKPILESPYYVDLNQTLFVQVSLYTSD 208
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
+L +F+DTC ASP P DFT+ TYDLI+SGC +DET + Y S RF+F++F FL+
Sbjct: 209 PNLVVFLDTCRASPTP-DFTSPTYDLIKSGCNQDETCKVYPL-SKHYGRFQFNAFKFLNS 266
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQ 694
SVYLQCK+++C + D KRD+ SY+ K D V+GPI+L+
Sbjct: 267 LGSVYLQCKILICDSGDHQSRCSQGCVSRTKRDLSSYKWKTDAVIGPIRLK 317
>ref|XP_544054.2| PREDICTED: similar to CUB and zona pellucida-like domains 1 isoform
1 [Canis familiaris].
Length = 608
Score = 186 bits (471), Expect = 5e-47
Identities = 96/231 (41%), Positives = 146/231 (63%), Gaps = 2/231 (0%)
Frame = +2
Query: 8 STQVTFTIPYSSCGTIQRVDNDTITYSN--SLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
S + F+IP CGTI++V++ ++TY+N +L + +S +I R+K L + + C M QN+
Sbjct: 313 SNVIDFSIPLDGCGTIKKVEDHSVTYTNIITLNPSPTSEVITRQKHLQIILKCEMEQNST 372
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
V +YI D + G ++ +++ F SSSF P+ SPYYVDLNQ L++Q + ++
Sbjct: 373 VEMMYITEDDIIQNESALGKYNTSMALFESSSFAKPILESPYYVDLNQTLFVQVSLYTSD 432
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
+L +F+DTC ASP P DFT+ TYDLI+SGC +DET + Y S RF+F++F FL+
Sbjct: 433 PNLVVFLDTCRASPTP-DFTSPTYDLIKSGCNQDETCKVYPL-SKHYGRFQFNAFKFLNS 490
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQ 694
SVYLQCK+++C + D KRD+ SY+ K D V+GPI+L+
Sbjct: 491 LGSVYLQCKILICDSGDHQSRCSQGCVSRTKRDLSSYKWKTDAVIGPIRLK 541
>ref|XP_544053.2| PREDICTED: similar to deleted in malignant brain tumors 1 isoform a
precursor [Canis familiaris].
Length = 1169
Score = 99.4 bits (246), Expect = 6e-21
Identities = 62/173 (35%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Frame = +2
Query: 74 TITYSNSLRAAVSSG---IIKRKKDLNMYVSCRMLQNTWVNTVYIANDTLEVQNVQYGNF 244
++ YSNS+R ++ R + + +CR + V + A +V + G +
Sbjct: 943 SLGYSNSIRGRTRGPPGRVVVRHRVPQLKFTCRAEGPSAVEVLPGA----DVPRERVG-Y 997
Query: 245 DVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANASLALFVDTCVASPYPNDFTT 424
DV+ISF P++ Y + ++LQA + + L L VDTCVASP P+DFTT
Sbjct: 998 DVSISFL-EWPLSPPMKHMGPYPASQRAVFLQATLHSPDPRLRLSVDTCVASPDPHDFTT 1056
Query: 425 LTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSRFPSVYLQCKMVVCR 583
+ YDLIR GC+KD TY +FKF++F+FLS + VYLQC++ VC+
Sbjct: 1057 VKYDLIRQGCIKDNTYVDLHSHQKNTAQFKFNAFNFLSNYDVVYLQCEVAVCK 1109
>ref|XP_546162.2| PREDICTED: similar to oncoprotein-induced transcript 3 [Canis
familiaris].
Length = 665
Score = 76.6 bits (187), Expect = 4e-14
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Frame = +2
Query: 11 TQVTFTIPYSSCGTIQRVDNDTITYSNSLRA------AVSSGIIKRKKDLNMYVSCRMLQ 172
T V +CGT+ V ND I SN + S II R L + V+C +
Sbjct: 420 THVNILFSLKTCGTVVDVVNDKIVASNLVTGLPKQTPGSSGDIIIRTSKLLIPVTCEFPR 479
Query: 173 NTWVNTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQA 343
++ Y+ N LE+ +G F + F + F P R + + L +LY
Sbjct: 480 LYTISEGYVPNLRNAPLEIMGRSHGIFPFTLEIFKDNEFEEPYREALPTLKLRDSLYFGI 539
Query: 344 E-ILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
E ++H N L V++C A+P L Y LI+ GCV D++ + Y+ F+
Sbjct: 540 EPVVHVNG-LESLVESCFATPTSKIDEILKYYLIQDGCVSDDSVKQYTSRDHLAKHFQVP 598
Query: 521 SFHFLSR-FPSVYLQCKMVVCRAFD 592
F F+ + V+L C+++VC D
Sbjct: 599 VFKFVGKDHKEVFLHCQVLVCGRLD 623
>ref|XP_546475.2| PREDICTED: similar to Alpha-tectorin precursor [Canis familiaris].
Length = 2155
Score = 64.7 bits (156), Expect = 2e-10
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Frame = +2
Query: 41 SCGTIQRVDNDTITYSNSL---RAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDT 211
+CG I + + I Y N++ A + II R + +N+ SC + ++ +
Sbjct: 1856 NCGNIVQSNGTHIMYKNTIWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPM 1915
Query: 212 LEVQNV----QYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LAL 376
L V N+ Q G+F ++ + ++S+ +P R + LY+ ++ A+++ L L
Sbjct: 1916 LSVINLTVPTQEGSFTTKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADSTHLIL 1975
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGC--VKDETYQSYSQPSPRIVRFKFSSFHFLSRFPS 550
++ C A+P + L Y +I GC +KD T RF + F F+ +
Sbjct: 1976 TLNKCYATPSRDSNDKLRYFIIEGGCQNIKDNTIGIEENGVSLTCRFHVTVFKFIGDYDE 2035
Query: 551 VYLQCKMVVC 580
V+L C + +C
Sbjct: 2036 VHLHCAVSLC 2045
>ref|NP_001003304.1| zona pellucida sperm-binding protein 2 precursor [Canis lupus
familiaris].
Length = 715
Score = 61.6 bits (148), Expect = 1e-09
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 18/204 (8%)
Frame = +2
Query: 23 FTIPYSSCGTIQRVDNDTITYSNSLRAA---VSSGIIKRKKDLNMYVSCRMLQNTWVNTV 193
F IP + CGT + DT+ Y N + A + I R + M V C ++ +
Sbjct: 414 FHIPLNGCGTRLKFKGDTVIYENEIHALWTDLPPSTISRDSEFRMTVKCHYSRDDLLINT 473
Query: 194 YIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYV--DLNQNLYLQAEILH-ANA 364
+ + V +V+ G + + + S+L P Y V L Q +YL+ ++L+ A+
Sbjct: 474 NVQSLPPPVASVRPGPLALILQTYPDKSYLRPYGDKEYPVVRYLRQPIYLEVKVLNRADP 533
Query: 365 SLALFVDTCVASPYPNDFTTLTYDLIRSGCVKD-ETYQSYSQPSPRIV-------RFKFS 520
++ L +D C A+P + + ++++ GC + + Y++ P V RF
Sbjct: 534 NIKLVLDDCWATPTMDPASLPQWNIVMDGCEYNLDNYRTTFHPVGSSVTYPTHYQRFDVK 593
Query: 521 SFHFLSR----FPSVYLQCKMVVC 580
+F F+S VY C ++C
Sbjct: 594 TFAFISEAQVLSSLVYFHCTALIC 617
>ref|NP_001003003.1| uromodulin precursor [Canis lupus familiaris].
Length = 642
Score = 55.8 bits (133), Expect = 7e-08
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 6/185 (3%)
Frame = +2
Query: 44 CGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDTLEVQ 223
CGT+ + TYSN+L A I+ R +++ + C + V+ +
Sbjct: 390 CGTVMVRNETHATYSNTLYLA--DEIVIRDRNIKINFECSYPLDMKVSLETSLQPIVSSL 447
Query: 224 NVQYGN---FDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LALFVDTC 391
N+ G F V ++ F + + P + S + LY+ + + S AL + C
Sbjct: 448 NISVGGTGMFTVRMALFQTPDYTQPYQGSSVTLTTEAFLYVGTMLDGGDLSRFALLMTNC 507
Query: 392 VASPYPNDFTTLTYDLIRSGCVK--DETYQSYSQPSPRIVRFKFSSFHFLSRFPSVYLQC 565
A+P N L Y +I+ C + D T Q RF F F + VYL C
Sbjct: 508 YATPSSNATDPLKYFIIQDRCPRTTDSTIQVVENGESPQGRFSVQMFRFAGNYDLVYLHC 567
Query: 566 KMVVC 580
++ +C
Sbjct: 568 EVYLC 572
>ref|XP_547284.2| PREDICTED: similar to TGF-beta receptor type III precursor (TGFR-3)
(Transforming growth factor beta receptor III)
(Betaglycan) [Canis familiaris].
Length = 928
Score = 54.7 bits (130), Expect = 2e-07
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Frame = +2
Query: 239 NFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANASLALFVDTCVASPYPNDF 418
N N+ + + FL P + + V N ++Y++ + A+ L + TC SPY N
Sbjct: 669 NITFNMELYNTDLFLVPSQGV-FSVAENGHIYVEVSVTKADQELGFAIQTCFISPYSNPD 727
Query: 419 TTLTYDLIRSGCVKDETYQSYSQPSPRIVRF---------KFSSFHFLSRFPS--VYLQC 565
Y +I + C KDE+ + Y SP+ V F K SF F S F + ++LQC
Sbjct: 728 RMSDYTIIENICPKDESVKFY---SPKRVHFPIPQAEMDKKRFSFVFKSIFNTSLLFLQC 784
Query: 566 KMVVC 580
++ +C
Sbjct: 785 ELTLC 789
>ref|XP_544021.2| PREDICTED: similar to tectorin beta [Canis familiaris].
Length = 329
Score = 53.9 bits (128), Expect = 3e-07
Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Frame = +2
Query: 38 SSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIAND--T 211
S CGT Q I + S + S +I + + +N SC VN T
Sbjct: 82 SYCGT-QSEYKPPIYHFYSHIVSNDSTVIVKNQPVNYSFSCTYHSTYLVNQAAFDQRVAT 140
Query: 212 LEVQNVQYGNFD--VNISFFTSSSFLYPVRSSPYYVDLNQ---NLYLQAEILHANASLAL 376
+ V+N G F+ ++++F+T++ F + +P+ ++ ++ +L+ E + +
Sbjct: 141 VHVKNGSMGTFESQLSLNFYTNAKFSTK-KEAPFVLETSEIGSDLFAGVEAKGLSIRFKV 199
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHF--LSRFPS 550
+++C A+P + L + LI GC DET + F+F++F F + +
Sbjct: 200 VLNSCWATPSADFMYPLQWQLINKGCPTDETVLVHENGKDHRATFQFNAFRFQNIPKLSK 259
Query: 551 VYLQCKMVVC 580
V+L C+ +C
Sbjct: 260 VWLHCETFIC 269
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,658,904
Number of extensions: 1474071
Number of successful extensions: 6804
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6729
Number of HSP's successfully gapped: 11
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403682.1| PREDICTED: deleted in malignant brain tumors... 346 2e-95
Alignment gi|XP_003403681.1| PREDICTED: deleted in malignant brain tumors... 346 2e-95
Alignment gi|XP_003403680.1| PREDICTED: deleted in malignant brain tumors... 346 2e-95
Alignment gi|NP_060049.2| deleted in malignant brain tumors 1 protein iso... 346 2e-95
Alignment gi|NP_015568.2| deleted in malignant brain tumors 1 protein iso... 346 2e-95
Alignment gi|NP_004397.2| deleted in malignant brain tumors 1 protein iso... 346 2e-95
Alignment gi|NP_071317.2| CUB and zona pellucida-like domain-containing p... 174 1e-43
Alignment gi|NP_689848.1| oncoprotein-induced transcript 3 protein precur... 78 2e-14
Alignment gi|NP_005413.2| alpha-tectorin precursor [Homo sapiens]. 65 9e-11
Alignment gi|NP_003451.1| zona pellucida sperm-binding protein 2 prepropr... 65 1e-10
>ref|XP_003403682.1| PREDICTED: deleted in malignant brain tumors 1 protein isoform 3
[Homo sapiens].
Length = 1133
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 886 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 945
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 946 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 1005
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 1006 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 1065
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 1066 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 1124
>ref|XP_003403681.1| PREDICTED: deleted in malignant brain tumors 1 protein isoform 2
[Homo sapiens].
Length = 1662
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 1415 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 1474
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 1475 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 1534
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 1535 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 1594
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 1595 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 1653
>ref|XP_003403680.1| PREDICTED: deleted in malignant brain tumors 1 protein isoform 1
[Homo sapiens].
Length = 1788
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 1541 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 1600
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 1601 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 1660
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 1661 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 1720
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 1721 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 1779
>ref|NP_060049.2| deleted in malignant brain tumors 1 protein isoform c precursor [Homo
sapiens].
Length = 2403
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 2156 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 2215
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 2216 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 2275
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 2276 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 2335
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 2336 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 2394
>ref|NP_015568.2| deleted in malignant brain tumors 1 protein isoform b precursor [Homo
sapiens].
Length = 2413
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 2166 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 2225
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 2226 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 2285
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 2286 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 2345
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 2346 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 2404
>ref|NP_004397.2| deleted in malignant brain tumors 1 protein isoform a precursor [Homo
sapiens].
Length = 1785
Score = 346 bits (888), Expect = 2e-95
Identities = 172/239 (71%), Positives = 193/239 (80%), Gaps = 7/239 (2%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT V FTIPYS CGT ++ DNDTI YSN L AAVS GIIKR+ DL ++VSCRMLQNTW
Sbjct: 1538 ITPNLVIFTIPYSGCGTFKQADNDTIDYSNFLTAAVSGGIIKRRTDLRIHVSCRMLQNTW 1597
Query: 182 VNTVYIANDTLEVQN-------VQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQ 340
V+T+YIANDT+ V N VQYGNFDVNISF+TSSSFLYPV S PYYVDLNQ+LY+Q
Sbjct: 1598 VDTMYIANDTIHVANNTIQVEEVQYGNFDVNISFYTSSSFLYPVTSRPYYVDLNQDLYVQ 1657
Query: 341 AEILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
AEILH++A L LFVDTCVASPY NDFT+LTYDLIRSGCV+D+TY YS PS RI RF+F
Sbjct: 1658 AEILHSDAVLTLFVDTCVASPYSNDFTSLTYDLIRSGCVRDDTYGPYSSPSLRIARFRFR 1717
Query: 521 SFHFLSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
+FHFL+RFPSVYL+CKMVVCRA+D KRDVGSYQEKVDVVLGPIQLQT
Sbjct: 1718 AFHFLNRFPSVYLRCKMVVCRAYDPSSRCYRGCVLRSKRDVGSYQEKVDVVLGPIQLQT 1776
>ref|NP_071317.2| CUB and zona pellucida-like domain-containing protein 1 precursor
[Homo sapiens].
Length = 607
Score = 174 bits (441), Expect = 1e-43
Identities = 91/231 (39%), Positives = 142/231 (61%), Gaps = 2/231 (0%)
Frame = +2
Query: 8 STQVTFTIPYSSCGTIQRVDNDTITYSN--SLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
S V F++P + CGTI++V++ +ITY+N + A+ +S +I R+K L + V C M N+
Sbjct: 313 SNVVEFSVPLNGCGTIRKVEDQSITYTNIITFSASSTSEVITRQKQLQIIVKCEMGHNST 372
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
V +YI D + G ++ +++ F S+SF + SPYYVDLNQ L++Q + ++
Sbjct: 373 VEIIYITEDDVIQSQNALGKYNTSMALFESNSFEKTILESPYYVDLNQTLFVQVSLHTSD 432
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
+L +F+DTC ASP +DF + TYDLI+SGC +DET + Y RF+F++F FL
Sbjct: 433 PNLVVFLDTCRASP-TSDFASPTYDLIKSGCSRDETCKVYPL-FGHYGRFQFNAFKFLRS 490
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQ 694
SVYLQCK+++C + D KRD+ SY+ K D ++GPI+L+
Sbjct: 491 MSSVYLQCKVLICDSSDHQSRCNQGCVSRSKRDISSYKWKTDSIIGPIRLK 541
>ref|NP_689848.1| oncoprotein-induced transcript 3 protein precursor [Homo sapiens].
Length = 545
Score = 77.8 bits (190), Expect = 2e-14
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 10/204 (4%)
Frame = +2
Query: 11 TQVTFTIPYSSCGTIQRVDNDTITYSNSLRA------AVSSGIIKRKKDLNMYVSCRMLQ 172
T V +CGT+ V ND I SN + S I R L + V+C +
Sbjct: 301 THVNILFSLKTCGTVVDVVNDKIVASNLVTGLPKQTPGSSGDFIIRTSKLLIPVTCEFPR 360
Query: 173 NTWVNTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQA 343
++ Y+ N LE+ + +G F + F + F P R + + L +LY
Sbjct: 361 LYTISEGYVPNLRNSPLEIMSRNHGIFPFTLEIFKDNEFEEPYREALPTLKLRDSLYFGI 420
Query: 344 EILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSS 523
E + + L V++C A+P L Y LIR GCV D++ + Y+ F+
Sbjct: 421 EPVVHVSGLESLVESCFATPTSKIDEVLKYYLIRDGCVSDDSVKQYTSRDHLAKHFQVPV 480
Query: 524 FHFLSR-FPSVYLQCKMVVCRAFD 592
F F+ + V+L C+++VC D
Sbjct: 481 FKFVGKDHKEVFLHCRVLVCGVLD 504
>ref|NP_005413.2| alpha-tectorin precursor [Homo sapiens].
Length = 2155
Score = 65.5 bits (158), Expect = 9e-11
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Frame = +2
Query: 41 SCGTIQRVDNDTITYSNSL---RAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDT 211
+CG I + + I Y N+L A + II R + +N+ SC + ++ +
Sbjct: 1856 NCGNIVQSNGTHIMYKNTLWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPM 1915
Query: 212 LEVQNV----QYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LAL 376
L V N+ Q G+F ++ + ++S+ +P R + LY+ ++ A+A+ L L
Sbjct: 1916 LSVINLTVPTQEGSFITKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADATHLIL 1975
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGC--VKDETYQSYSQPSPRIVRFKFSSFHFLSRFPS 550
++ C A+P + L Y +I GC +KD T RF + F F+ +
Sbjct: 1976 TLNKCYATPTRDSNDKLRYFIIEGGCQNLKDNTIGIEENAVSLTCRFHVTVFKFIGDYDE 2035
Query: 551 VYLQCKMVVC 580
V+L C + +C
Sbjct: 2036 VHLHCAVSLC 2045
>ref|NP_003451.1| zona pellucida sperm-binding protein 2 preproprotein [Homo sapiens].
Length = 745
Score = 64.7 bits (156), Expect = 1e-10
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Frame = +2
Query: 17 VTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSS---GIIKRKKDLNMYVSCRMLQNTWVN 187
V F IP + CGT + ++D + Y N + A + I R + M V C +N +
Sbjct: 415 VRFHIPLNGCGTRYKFEDDKVVYENEIHALWTDFPPSKISRDSEFRMTVKCSYSRNDMLL 474
Query: 188 TVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYV--DLNQNLYLQAEILHA- 358
+ + + T V +V+ G F + + + +S+ P + Y + L Q +Y++ +L+
Sbjct: 475 NINVESLTPPVASVKLGPFTLILQSYPDNSYQQPYGENEYPLVRFLRQPIYMEVRVLNRD 534
Query: 359 NASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKD-ETYQSYSQPSPRIV-------RFK 514
+ ++ L +D C A+ + + ++++ GC D + YQ+ P V RF
Sbjct: 535 DPNIKLVLDDCWATSTMDPDSFPQWNVVVDGCAYDLDNYQTTFHPVGSSVTHPDHYQRFD 594
Query: 515 FSSFHFLSR----FPSVYLQCKMVVC 580
+F F+S VY C ++C
Sbjct: 595 MKAFAFVSEAHVLSSLVYFHCSALIC 620
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,635,363
Number of extensions: 1432868
Number of successful extensions: 6838
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 6724
Number of HSP's successfully gapped: 19
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031795.2| deleted in malignant brain tumors 1 protein [Mu... 413 e-115
Alignment gi|NP_032437.3| CUB and zona pellucida-like domain-containing p... 165 5e-41
Alignment gi|NP_035089.1| oncoprotein-induced transcript 3 protein precur... 82 8e-16
Alignment gi|NP_033373.2| alpha-tectorin precursor [Mus musculus]. 65 7e-11
Alignment gi|NP_035905.1| zona pellucida sperm-binding protein 2 precurso... 61 2e-09
Alignment gi|NP_033496.1| uromodulin precursor [Mus musculus]. 59 9e-09
Alignment gi|NP_033374.2| beta-tectorin precursor [Mus musculus]. 54 2e-07
Alignment gi|NP_035708.2| transforming growth factor beta receptor type 3... 54 2e-07
Alignment gi|NP_803416.2| uromodulin-like 1 [Mus musculus]. 50 4e-06
>ref|NP_031795.2| deleted in malignant brain tumors 1 protein [Mus musculus].
Length = 1946
Score = 413 bits (1061), Expect = e-115
Identities = 203/294 (69%), Positives = 238/294 (80%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
IT +V FTIPY+ CGTI++ DN+TI YSN LRA VS+GIIKR+KDLN++VSC+MLQNTW
Sbjct: 1652 ITQREVIFTIPYTGCGTIKQADNETINYSNFLRAVVSNGIIKRRKDLNIHVSCKMLQNTW 1711
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
VNT+YI N+T+E+Q VQYGNFDVNISF+TSSSFL+PV SSPYYVDL+QNLYLQAEILH++
Sbjct: 1712 VNTMYITNNTVEIQEVQYGNFDVNISFYTSSSFLFPVTSSPYYVDLDQNLYLQAEILHSD 1771
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
ASLALFVDTCVASP+PNDF++LTYDLIRSGCV+D+TYQSYS PSPR+ RFKFSSFHFL+R
Sbjct: 1772 ASLALFVDTCVASPHPNDFSSLTYDLIRSGCVRDDTYQSYSSPSPRVSRFKFSSFHFLNR 1831
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQTLHAEKRSL 721
FPSVYLQCK+VVCRA+D KRDVGSYQEKVDVVLGPIQLQ+ EKRSL
Sbjct: 1832 FPSVYLQCKLVVCRAYDTSSRCYRGCVVRSKRDVGSYQEKVDVVLGPIQLQSPSKEKRSL 1891
Query: 722 DQPAVDLEEKASAQGSYDGAAISAGIFXXXXXXXXXFTLGRRGRAADGQPLISK 883
D D+++ AS+Q Y AAI G+F FTLGRR GQP +K
Sbjct: 1892 DLAVEDVKKPASSQAVYPTAAIFGGVFLAMVLAVAAFTLGRRTHIDRGQPPSTK 1945
>ref|NP_032437.3| CUB and zona pellucida-like domain-containing protein 1 [Mus
musculus].
Length = 607
Score = 165 bits (418), Expect = 5e-41
Identities = 90/231 (38%), Positives = 138/231 (59%), Gaps = 2/231 (0%)
Frame = +2
Query: 8 STQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVS--SGIIKRKKDLNMYVSCRMLQNTW 181
S + F+IP CGT++++++ I+Y+N + S S +I R+K L + V+C M N+
Sbjct: 313 SNVIEFSIPLHECGTVKKIEDHAISYTNRITFIESPVSAVITRQKLLQIVVTCEMEYNST 372
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
V +YI D + G ++ +++ + S SF V+ SPYYVDLNQ L++QA + ++
Sbjct: 373 VEIMYITEDDIIQNQSVLGKYNTSLALYESDSFENLVQESPYYVDLNQTLFVQATLHTSD 432
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
SL +F+DTC ASP +DF + TYDLI SGC +DET + Y RF+F++F FL
Sbjct: 433 PSLVVFLDTCRASP-TSDFASPTYDLISSGCCQDETCKVYPL-FGHYGRFQFNAFKFLKH 490
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQ 694
SVYL+CK+++C D KRD+ SY+ K D V+GPI+L+
Sbjct: 491 LNSVYLKCKILICDNNDQTSRCNQGCVPRRKRDIPSYKWKTDSVIGPIRLK 541
>ref|NP_035089.1| oncoprotein-induced transcript 3 protein precursor [Mus musculus].
Length = 546
Score = 82.0 bits (201), Expect = 8e-16
Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 11/249 (4%)
Frame = +2
Query: 11 TQVTFTIPYSSCGTIQRVDNDTITYSNSLRA------AVSSGIIKRKKDLNMYVSCRMLQ 172
T V +CGT+ V ND I SN + S II R L + V+C +
Sbjct: 301 THVNIVFSLKTCGTVVDVVNDKIVASNIVTGLPKETPGSSGDIIIRTSKLLIPVTCEFPR 360
Query: 173 NTWVNTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQA 343
++ Y+ N LE+++ +G F + F F P R + + L +LY
Sbjct: 361 LYTISEGYVPNLRNAPLEIRSRNHGIFPFTLEIFKDHEFEEPYRETLPTLKLRDSLYFGI 420
Query: 344 E-ILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
E ++H N L V++C A+P L Y LI+ GCV D++ + YS F+
Sbjct: 421 EPLVHVNG-LESLVESCFATPTAKMDEILKYYLIQDGCVSDDSVKQYSSRDHLAKHFQAP 479
Query: 521 SFHFLSR-FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQT 697
F F+ + V+L C+++VC D +R+VG ++ +Q QT
Sbjct: 480 VFKFVGKDHKEVFLHCRVLVCGVLDERSRCAQGCHRRVRREVGEDEDSAG-----LQSQT 534
Query: 698 LHAEKRSLD 724
L ++D
Sbjct: 535 LTGGPIAID 543
>ref|NP_033373.2| alpha-tectorin precursor [Mus musculus].
Length = 2155
Score = 65.5 bits (158), Expect = 7e-11
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 10/230 (4%)
Frame = +2
Query: 41 SCGTIQRVDNDTITYSNSL---RAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDT 211
+CG I + + I Y N++ A + II R + +N+ SC + ++ +
Sbjct: 1856 NCGNIVQSNGTHIMYKNTIWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPM 1915
Query: 212 LEVQNV----QYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LAL 376
L V N+ Q G+F ++ + ++S+ +P R + LY+ ++ A+++ L L
Sbjct: 1916 LSVINLTVPTQEGSFTTKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADSTHLIL 1975
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGC--VKDETYQSYSQPSPRIVRFKFSSFHFLSRFPS 550
++ C A+P + L Y +I GC +KD T RF + F F+ +
Sbjct: 1976 TLNKCYATPSRDSNDKLRYFIIEGGCQNIKDNTIGIEENGVSLTCRFHVTVFKFIGDYDE 2035
Query: 551 VYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQTL 700
V+L C + +C + D ++ + +GPI+ + L
Sbjct: 2036 VHLHCAVSLCDSEKYSCKINCPQNSRIATDYSKEHKEQIISVGPIRRKRL 2085
>ref|NP_035905.1| zona pellucida sperm-binding protein 2 precursor [Mus musculus].
Length = 713
Score = 60.8 bits (146), Expect = 2e-09
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Frame = +2
Query: 23 FTIPYSSCGTIQRVDNDTITYSNSLRAA---VSSGIIKRKKDLNMYVSCRMLQNTWVNTV 193
F IP + CGT Q+ + D + Y N + A S I+ R + M V C ++++ +
Sbjct: 410 FHIPLNGCGTRQKFEGDKVIYENEIHALWENPPSNIVFRNSEFRMTVRCYYIRDSMLLNA 469
Query: 194 YIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYV--DLNQNLYLQAEILHAN-A 364
++ V+ G + + + S+ P R Y + L Q +Y++ ++L N
Sbjct: 470 HVKGHPSPEAFVKPGPLVLVLQTYPDQSYQRPYRKDEYPLVRYLRQPIYMEVKVLSRNDP 529
Query: 365 SLALFVDTCVASPYPNDFTTLTYDLIRSGCVKD-ETYQSYSQP-------SPRIVRFKFS 520
++ L +D C A+ + + + ++ GC + + Y++ P S RF
Sbjct: 530 NIKLVLDDCWATSSEDPASAPQWQIVMDGCEYELDNYRTTFHPAGSSAAHSGHYQRFDVK 589
Query: 521 SFHFLSRFPS----VYLQCKMVVC 580
+F F+S +Y C ++C
Sbjct: 590 TFAFVSEARGLSSLIYFHCSALIC 613
>ref|NP_033496.1| uromodulin precursor [Mus musculus].
Length = 642
Score = 58.5 bits (140), Expect = 9e-09
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 7/228 (3%)
Frame = +2
Query: 44 CGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDTLEVQ 223
CGT+ R + TYSN+L A + II R + M C + V+ +
Sbjct: 390 CGTVLRRNETHATYSNTLYLA--NAIIIRDIIIRMNFECSYPLDMKVSLKTSLQPMVSAL 447
Query: 224 NVQYGN---FDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LALFVDTC 391
N+ G F V ++ F S ++ P + + LY+ + + S L + C
Sbjct: 448 NISLGGTGKFTVRMALFQSPTYTQPHQGPSVMLSTEAFLYVGTMLDGGDLSRFVLLMTNC 507
Query: 392 VASPYPNDFTTLTYDLIRSGC--VKDETYQSYSQPSPRIVRFKFSSFHFLSRFPSVYLQC 565
A+P N + Y +I+ C +D T Q RF F F + VYL C
Sbjct: 508 YATPSSNSTDPVKYFIIQDSCPRTEDTTIQVTENGESSQARFSVQMFRFAGNYDLVYLHC 567
Query: 566 KMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVV-LGPIQLQTLHA 706
++ +C D + G++ ++ V+ LGPI Q + A
Sbjct: 568 EVYLC---DSTSEQCKPTCSGTRFRSGNFIDQTRVLNLGPITRQGVQA 612
>ref|NP_033374.2| beta-tectorin precursor [Mus musculus].
Length = 329
Score = 54.3 bits (129), Expect = 2e-07
Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Frame = +2
Query: 38 SSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIAND--T 211
S CGT Q I + S + S +I + + +N SC VN T
Sbjct: 82 SYCGT-QSEYKPPIYHFYSHIVSNDSTVIVKNQPVNYSFSCTYHSTYLVNQAAFDQRVAT 140
Query: 212 LEVQNVQYGNFD--VNISFFTSSSFLYPVRSSPYYVDLNQ---NLYLQAEILHANASLAL 376
+ V+N G F+ ++++F+T++ F + +P+ ++ ++ +L+ E + +
Sbjct: 141 VHVKNGSMGTFESQLSLNFYTNAKFSTK-KEAPFVLETSEIGSDLFAGVEAKGLSVRFKV 199
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHF--LSRFPS 550
+++C A+P + L + LI GC DET + F+F++F F + +
Sbjct: 200 VLNSCWATPSADFMYPLQWQLINKGCPTDETVLVHENGKDHRATFQFNAFRFQNIPKLSK 259
Query: 551 VYLQCKMVVC 580
V+L C+ +C
Sbjct: 260 VWLHCETFIC 269
>ref|NP_035708.2| transforming growth factor beta receptor type 3 precursor [Mus
musculus].
Length = 850
Score = 53.9 bits (128), Expect = 2e-07
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Frame = +2
Query: 236 GNFDVNISFFTSSSFLYPVRSSP--YYVDLNQNLYLQAEILHANASLALFVDTCVASPYP 409
GN N+ + + FL P SP + V N+++Y++ + A+ L + TC SPY
Sbjct: 588 GNATFNMELYNTDLFLVP---SPGVFSVAENEHVYVEVSVTKADQDLGFAIQTCFISPYS 644
Query: 410 NDFTTLTYDLIRSGCVKDETYQSYSQ-----PSPRI-VRFKFSSFHFLSRFPS--VYLQC 565
N Y +I + C KD++ + YS P P V K SF F S F + ++L C
Sbjct: 645 NPDRMSDYTIIENICPKDDSVKFYSSKRVHFPIPHAEVDKKRFSFVFKSVFNTSLLFLHC 704
Query: 566 KMVVC 580
++ +C
Sbjct: 705 ELTLC 709
>ref|NP_803416.2| uromodulin-like 1 [Mus musculus].
Length = 1348
Score = 49.7 bits (117), Expect = 4e-06
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 5/196 (2%)
Frame = +2
Query: 8 STQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVS-SGIIKRKKDLNMYVSCRMLQNTWV 184
ST V + CGTI + + T + +LR +S G+I + L+ + C +
Sbjct: 1063 STHVFLVAGWGECGTILQSNMTTTVVTTTLRNNLSPEGVIHHPQFLSP-IHCAFQNDVLT 1121
Query: 185 NTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILH 355
++ Y T+ GNF + + S P+ + Y V + + ++ +
Sbjct: 1122 SSGYTPQWGVYTVIEDLHGTGNFVTEMQLYIGDS---PIPQN-YSVSASDEIKIEVGLHR 1177
Query: 356 ANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPS-PRIVRFKFSSFHF 532
+SL + + C A+P N +T+ I + C TY S Q +FK F F
Sbjct: 1178 QKSSLKVVLTECWATPSSNAKDPVTFSFINNSCPVPNTYTSVIQNGHSSKAQFKLRIFSF 1237
Query: 533 LSRFPSVYLQCKMVVC 580
++ VYL CK+ VC
Sbjct: 1238 INN-SIVYLHCKLRVC 1252
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,477,223
Number of extensions: 1184326
Number of successful extensions: 5197
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5101
Number of HSP's successfully gapped: 9
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041653.1| deleted in malignant brain tumors 1 protein ... 537 e-153
Alignment gi|XP_003133265.2| PREDICTED: hypothetical protein LOC100519221... 125 6e-29
Alignment gi|XP_003133118.2| PREDICTED: oncoprotein-induced transcript 3 ... 79 5e-15
Alignment gi|XP_003130006.2| PREDICTED: alpha-tectorin-like [Sus scrofa]. 65 9e-11
Alignment gi|NP_999013.1| zona pellucida sperm-binding protein 2 precurso... 57 2e-08
Alignment gi|XP_001927947.1| PREDICTED: beta-tectorin [Sus scrofa]. 54 2e-07
Alignment gi|NP_999210.1| zona pellucida sperm-binding protein 4 [Sus scr... 54 2e-07
Alignment gi|NP_999437.1| transforming growth factor beta receptor type 3... 51 1e-06
>ref|NP_001041653.1| deleted in malignant brain tumors 1 protein [Sus scrofa].
Length = 1349
Score = 537 bits (1383), Expect = e-153
Identities = 272/295 (92%), Positives = 273/295 (92%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 181
ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW
Sbjct: 1055 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTW 1114
Query: 182 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHAN 361
VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAE+LHAN
Sbjct: 1115 VNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAELLHAN 1174
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 541
ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR
Sbjct: 1175 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHFLSR 1234
Query: 542 FPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQLQTLHAEKRSL 721
FPSVYLQCKMVVCRAFD KRDVGSYQEKVDVVLGPIQLQTLHAEKRSL
Sbjct: 1235 FPSVYLQCKMVVCRAFDSSSRCRRGCVVRSKRDVGSYQEKVDVVLGPIQLQTLHAEKRSL 1294
Query: 722 DQPAVDLEEKASAQGSYDGAAISAGIFXXXXXXXXXFTLGRRGRAADGQPLISKT 886
DQPAVDLEEKASAQGSYDGAAISAGIF FTLGRRGRAADGQPLISKT
Sbjct: 1295 DQPAVDLEEKASAQGSYDGAAISAGIFLVVVLAVAAFTLGRRGRAADGQPLISKT 1349
>ref|XP_003133265.2| PREDICTED: hypothetical protein LOC100519221 [Sus scrofa].
Length = 3078
Score = 125 bits (313), Expect = 6e-29
Identities = 77/233 (33%), Positives = 114/233 (48%), Gaps = 3/233 (1%)
Frame = +2
Query: 2 ITSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRA---AVSSGIIKRKKDLNMYVSCRMLQ 172
+T + F+IPY CGT+Q+ +++YSNS+R +I R K + +CR
Sbjct: 2809 VTGRYLVFSIPYGRCGTVQQESLGSLSYSNSIRGRRRGHPGRVIMRHKVPQLKFTCREDG 2868
Query: 173 NTWVNTVYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEIL 352
V+ + AN E +DV+ISF + P++ + + LQA +
Sbjct: 2869 PAVVDVIPGANVLREG-----AGYDVSISFLELPVAQHVGSMGPHHASRRKEVVLQATLH 2923
Query: 353 HANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHF 532
+ L LFVDTCVASP P DFTT+ +DLIR GC+KD Y + FK + F F
Sbjct: 2924 SPDPRLRLFVDTCVASPDPRDFTTVKHDLIRQGCIKDNAYVNLHSHQKNTALFKVNVFGF 2983
Query: 533 LSRFPSVYLQCKMVVCRAFDXXXXXXXXXXXXXKRDVGSYQEKVDVVLGPIQL 691
L+ + +YLQCK+ VC+A D KR+ G E + +G Q+
Sbjct: 2984 LTSYDVIYLQCKVAVCKAEDRSSRCPQGCAGRSKREAGP-TEATEEQMGHFQM 3035
>ref|XP_003133118.2| PREDICTED: oncoprotein-induced transcript 3 protein-like [Sus
scrofa].
Length = 546
Score = 79.0 bits (193), Expect = 5e-15
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 11/205 (5%)
Frame = +2
Query: 11 TQVTFTIPYSSCGTIQRVDNDTITYSNSLRA------AVSSGIIKRKKDLNMYVSCRMLQ 172
T V +CGT+ V ND I SN + S II R L + V+C +
Sbjct: 301 THVNIIFSLKTCGTVVDVVNDKIVASNLVTGLPKQTPGSSGDIIIRTSKLLIPVTCEFPR 360
Query: 173 NTWVNTVYIAN---DTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQA 343
++ Y+ N LE+ + +G F + F + F P R + + L +LY
Sbjct: 361 LYTISEGYVPNLRNTPLEIMSRSHGIFPFTLEIFKDNEFEEPYREALPTLKLRDSLYFGI 420
Query: 344 E-ILHANASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFS 520
E ++H N L V++C A+P L Y LIR GCV D++ + Y+ F+
Sbjct: 421 EPLVHVNG-LESLVESCFATPTSKIDEILKYYLIRDGCVSDDSVKQYTSRDHLAKHFQVP 479
Query: 521 SFHFLSR-FPSVYLQCKMVVCRAFD 592
F F+ + V+L C+++VC D
Sbjct: 480 VFKFVGKDHKEVFLHCRVLVCGMLD 504
>ref|XP_003130006.2| PREDICTED: alpha-tectorin-like [Sus scrofa].
Length = 2160
Score = 64.7 bits (156), Expect = 9e-11
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Frame = +2
Query: 41 SCGTIQRVDNDTITYSNSL---RAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIANDT 211
+CG I + + I Y N++ A + II R + +N+ SC + ++ +
Sbjct: 1861 NCGNIVQSNGTHIMYKNTIWIESANNTGNIITRDRTINVEFSCAYELDIKISLDSVVKPM 1920
Query: 212 LEVQNV----QYGNFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANAS-LAL 376
L V N+ Q G+F ++ + ++S+ +P R + LY+ ++ A+++ L L
Sbjct: 1921 LSVINLTVPTQEGSFTTKMALYKNASYKHPYRQGEVVLTTRDVLYVGVFVVGADSTHLIL 1980
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGC--VKDETYQSYSQPSPRIVRFKFSSFHFLSRFPS 550
++ C A+P + L Y +I GC +KD T RF + F F+ +
Sbjct: 1981 TLNKCYATPSRDSNDKLRYFIIEGGCQNIKDNTIGIEENGVSLTCRFHVTVFKFIGDYDE 2040
Query: 551 VYLQCKMVVC 580
V+L C + +C
Sbjct: 2041 VHLHCAVSLC 2050
>ref|NP_999013.1| zona pellucida sperm-binding protein 2 precursor [Sus scrofa].
Length = 716
Score = 56.6 bits (135), Expect = 2e-08
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 17/205 (8%)
Frame = +2
Query: 17 VTFTIPYSSCGTIQRVDNDTITYSNSLRA--AVSSGIIKRKKDLNMYVSCRMLQNTWVNT 190
V F IP + CGT + ND + Y N + A A + R + M V C + +
Sbjct: 414 VQFRIPLNGCGTRHKFKNDKVIYENEIHALWADPPSAVSRDSEFRMTVRCSYSSSNMLIN 473
Query: 191 VYIANDTLEVQNVQYGNFDVNISFFTSSSFLYPVRSSPYYV--DLNQNLYLQAEILH-AN 361
+ + +V+ G + + + +++L P Y V L Q +YL+ IL+ +
Sbjct: 474 TNVESLPSPEASVKPGPLTLTLQTYPDNAYLQPYGDKEYPVVKYLRQPIYLEVRILNRTD 533
Query: 362 ASLALFVDTCVASPYPNDFTTLTYDLIRSGCVKD-ETYQSYSQPSPRIV-------RFKF 517
++ L +D C A+ + + ++++ GC + + +++ P V RF
Sbjct: 534 PNIKLVLDDCWATSTEDPASLPQWNVVMDGCEYNLDNHRTTFHPVGSSVTYPNHHQRFDV 593
Query: 518 SSFHFLSRFPS----VYLQCKMVVC 580
+F F+S VY C + +C
Sbjct: 594 KTFAFVSGAQGVSQLVYFHCSVFIC 618
>ref|XP_001927947.1| PREDICTED: beta-tectorin [Sus scrofa].
Length = 329
Score = 53.9 bits (128), Expect = 2e-07
Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 9/190 (4%)
Frame = +2
Query: 38 SSCGTIQRVDNDTITYSNSLRAAVSSGIIKRKKDLNMYVSCRMLQNTWVNTVYIAND--T 211
S CGT Q I + S + S +I + + +N SC VN T
Sbjct: 82 SYCGT-QSEYKPPIYHFYSHIVSNDSTVIVKNQPVNYSFSCTYHSTYLVNQAAFDQRVAT 140
Query: 212 LEVQNVQYGNFD--VNISFFTSSSFLYPVRSSPYYVDLNQ---NLYLQAEILHANASLAL 376
+ V+N G F+ ++++F+T++ F + +P+ ++ ++ +L+ E + +
Sbjct: 141 VHVKNGSMGTFESQLSLNFYTNAKFSTK-KEAPFVLETSEIGSDLFAGVEAKGLSIRFKV 199
Query: 377 FVDTCVASPYPNDFTTLTYDLIRSGCVKDETYQSYSQPSPRIVRFKFSSFHF--LSRFPS 550
+++C A+P + L + LI GC DET + F+F++F F + +
Sbjct: 200 VLNSCWATPSADFMYPLQWQLINKGCPTDETVLVHENGKDHRATFQFNAFRFQNIPKLSK 259
Query: 551 VYLQCKMVVC 580
V+L C+ +C
Sbjct: 260 VWLHCETFIC 269
>ref|NP_999210.1| zona pellucida sperm-binding protein 4 [Sus scrofa].
Length = 536
Score = 53.5 bits (127), Expect = 2e-07
Identities = 57/219 (26%), Positives = 85/219 (38%), Gaps = 26/219 (11%)
Frame = +2
Query: 5 TSTQVTFTIPYSSCGTIQRVDNDTITYSNSLRAA-----VSSGIIKRKKDLNMYVSCRML 169
T T V F P+SSCGT +RV + Y N L AA S G I R + VSC
Sbjct: 230 THTFVLFRFPFSSCGTAKRVTGNQAVYENELVAARDVRTWSHGSITRDSIFRLRVSCIYS 289
Query: 170 QNTWVNTVYIANDTL--EVQNVQYGNFDVNISFFTSSSF--LYPVRSSPYYVDLNQNLYL 337
++ V I TL + G + + + Y P L + +Y+
Sbjct: 290 VSSSALPVNIQVFTLPPPLPETHPGPLTLELQIAKDERYGSYYNASDYPVVKLLREPIYV 349
Query: 338 QAEILH-ANASLALFVDTCVASPYPNDFTTLTYDLIRSGC-VKDETYQSYSQPSPR---- 499
+ I H + SL L + C A+P + + ++ +GC + YQ+ P +
Sbjct: 350 EVSIRHRTDPSLGLHLHQCWATPGMSPLLQPQWPMLVNGCPYTGDNYQTKLIPVQKASNL 409
Query: 500 -----IVRFKFSSFHFLSRFPS------VYLQCKMVVCR 583
RF S+F F+ VYL C VC+
Sbjct: 410 LFPSHYQRFSVSTFSFVDSVAKQALKGPVYLHCTASVCK 448
>ref|NP_999437.1| transforming growth factor beta receptor type 3 precursor [Sus
scrofa].
Length = 848
Score = 50.8 bits (120), Expect = 1e-06
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Frame = +2
Query: 239 NFDVNISFFTSSSFLYPVRSSPYYVDLNQNLYLQAEILHANASLALFVDTCVASPYPNDF 418
N ++ +T+ FL P + + V N ++Y++ + A+ L + TC SPY N
Sbjct: 589 NVTFSMDLYTTDLFLAPAQGV-FSVAENGHVYVEVSVTKADQELGFAIQTCFISPYSNPD 647
Query: 419 TTLTYDLIRSGCVKDETYQSYSQPSPRIVRF---------KFSSFHFLSRFPS--VYLQC 565
Y +I + C KDE+ + Y P+ V F K SF F F + ++LQC
Sbjct: 648 RMSDYTIIENICPKDESVKFY---DPKRVHFPIPQAETDKKRFSFVFKPVFNTSLLFLQC 704
Query: 566 KMVVC 580
++ +C
Sbjct: 705 ELTLC 709
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,862,167
Number of extensions: 922664
Number of successful extensions: 4356
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4316
Number of HSP's successfully gapped: 8
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002850
(1127 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 745 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 745 bits (376), Expect = 0.0
Identities = 388/392 (98%)
Strand = Plus / Minus
Query: 61 ggtggacaatgacaccatcacctattccaactccctcagagcggccgtctcaagtggcat 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 43733329 ggtggacaatgacaccatcacctattccaactccctcagagcggctgtctcaagtggcat 43733270
Query: 121 catcaagaggaagaaggacctcaacatgtacgtcagctgcagaatgctccagaacacctg 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 43733269 catcaagaggaagaaggacctccacatgtacgtcagctgcagaatgctccagaacacctg 43733210
Query: 181 ggttaacaccgtgtacattgctaacgacacccttgaggtccagaatgtgcagtatggcaa 240
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 43733209 ggttaacaccgtgtacattgctaacgacaccctcgaggtccagaacgtgcagtatggcaa 43733150
Query: 241 cttcgacgtcaacatttccttttttacctcctcttcgttcttatatcccgtgaggagcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43733149 cttcgacgtcaacatttccttttttacctcctcttcgttcttatatcccgtgaggagcag 43733090
Query: 301 cccatactacgtggacctgaaccagaatctgtaccttcaggctgagatcctccatgccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43733089 cccatactacgtggacctgaaccagaatctgtaccttcaggctgagatcctccatgccaa 43733030
Query: 361 cgcctccctggccttatttgtggacacctgtgtggcatcaccatatcccaatgactttac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43733029 cgcctccctggccttatttgtggacacctgtgtggcatcaccatatcccaatgactttac 43732970
Query: 421 aactttgacttacgacctcatccggagcgggt 452
||||||||||||||||||||||||||||||||
Sbjct: 43732969 aactttgacttacgacctcatccggagcgggt 43732938
Score = 706 bits (356), Expect = 0.0
Identities = 398/410 (97%), Gaps = 4/410 (0%)
Strand = Plus / Minus
Query: 722 gaccagccggcggttgacctggaggagaaggccagcgcccaggggagctacgacggtgct 781
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 43729470 gaccagccagcggttgacctggaggagaaggccagcacccaggggagctacgacggtgct 43729411
Query: 782 gctatctctgctgggatctttcttgtcgtggtcttggccgtggcagccttcaccctgggg 841
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 43729410 gctatctctgctgggatctttctcgtcgtggtcttggccgtggcagccttcaccctgggg 43729351
Query: 842 aggcgcggccgtgctgccgacggccagcctctgatctctaagacatgatgcagggaaggg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43729350 aggcgcggccgtgctgccgacggccagcctctgatctctaagacatgatgcagggaaggg 43729291
Query: 902 cgcacggtgctcagaggtccccgagctccggagcccccggaggaaggaagaaaccagggt 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43729290 cgcacggtgctcagaggtccccgagctccggagcccccggaggaaggaagaaaccagggt 43729231
Query: 962 ccagagctgggcacccagagcaccccactcgcttcctctggcccaggtgcatggtg---g 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 43729230 ccagagctgggcacccagagcaccccactcgcttcctctggcccaggtgcatggtggggg 43729171
Query: 1019 gggttgggtgagaaggacgggagtaggctttcccagaaacaccgccttggtgctgggaca 1078
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 43729170 ggggtgggtgagaaggacgggagtaggttttcccagaaacaccgccttggtgctgggaca 43729111
Query: 1079 aaacgccagggcagcaggtaccagaccctg-aatcctgcccgcagccatg 1127
|||||||||| |||||||||||||| |||| ||||||||| |||||||||
Sbjct: 43729110 aaacgccaggccagcaggtaccagaacctgaaatcctgcctgcagccatg 43729061
Score = 525 bits (265), Expect = e-146
Identities = 271/273 (99%)
Strand = Plus / Minus
Query: 450 ggtgtgtgaaggacgaaacctaccagtcctactctcagccgtcgccccgcatcgtccgct 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43732028 ggtgtgtgaaggacgaaacctaccagtcctactctcagccgtcgccccgcatcgtccgct 43731969
Query: 510 tcaagttcagttccttccacttcctgagccgcttcccctccgtgtacctgcagtgtaaga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43731968 tcaagttcagttccttccacttcctgagccgcttcccctccgtgtacctgcagtgtaaga 43731909
Query: 570 tggtcgtgtgcagagcgttcgactcctcctcccgctgccgcagaggctgcgtggtgaggt 629
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43731908 tggtcgtgtgcagggcgttcgactcctcctcccgctgccgcagaggctgcgtggtgaggt 43731849
Query: 630 ccaagagggacgtgggctcctaccaggagaaggtggatgttgtcctgggacccatccagc 689
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 43731848 ccaagagggacgtgggctcctaccaggagaaggtggatgtcgtcctgggacccatccagc 43731789
Query: 690 tgcagaccctgcacgctgagaagaggagcctgg 722
|||||||||||||||||||||||||||||||||
Sbjct: 43731788 tgcagaccctgcacgctgagaagaggagcctgg 43731756
Score = 196 bits (99), Expect = 2e-47
Identities = 203/235 (86%), Gaps = 2/235 (0%)
Strand = Plus / Minus
Query: 722 gaccagccggcggttgacctggaggagaaggccagcgcccaggggagctacgacggtgct 781
|||||||| ||||||||||||| |||| |||||||| |||| ||||| ||| || ||||
Sbjct: 43670911 gaccagccagcggttgacctggtggaggaggccagcacccatgggagataccacagtgcc 43670852
Query: 782 gctatctctgctgggatctttcttgtcgtggtcttggccgtggcagccttcaccctgggg 841
| ||||||||||| |||| || ||| ||||||||||||| ||||||||| | ||||||
Sbjct: 43670851 accatctctgctggcgtcttcctggtcatggtcttggccgtagcagccttcgcactgggg 43670792
Query: 842 aggcgcggccgtgctgccgacggccagcctctgatctctaagacatgatgcagggaaggg 901
|||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 43670791 aggcgcagctgtgctgccagcggccagcctctgatctctaagatgtgatgcagggaaggg 43670732
Query: 902 cgcacggtgctcagaggtccccgagctccggag-cccccggaggaaggaagaaac 955
|||| |||||||||||| |||| ||||| |||| |||| ||||||||||| ||||
Sbjct: 43670731 cgcatggtgctcagagg-cccccagctctggagtccccgggaggaaggaaaaaac 43670678
Score = 125 bits (63), Expect = 6e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1 gattacgtctacccaggtgacattcacgattccctactccagctgtggcaccatccagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43738410 gattacgtctacccaggtgacattcacgattccctactccagctgtggcaccatccagcg 43738351
Query: 61 ggt 63
|||
Sbjct: 43738350 ggt 43738348
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,898,075
Number of extensions: 150
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 5
Length of query: 1127
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1106
Effective length of database: 2,808,413,156
Effective search space: 3106104950536
Effective search space used: 3106104950536
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)