Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178298.1| uroporphyrinogen-III synthase [Bos taurus]. 390 e-109
Alignment gi|XP_002698611.1| PREDICTED: uroporphyrinogen III synthase [Bo... 390 e-109
>ref|NP_001178298.1| uroporphyrinogen-III synthase [Bos taurus].
Length = 264
Score = 390 bits (1003), Expect = e-109
Identities = 194/242 (80%), Positives = 210/242 (86%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDD GQDPY+RELGLYGLEATLIPV HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDC-GQDPYVRELGLYGLEATLIPVLSFEFLSLPSLSEKLSHPEGYGGL 59
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAV+ CL+K K E W+ SLKEKWN+KSVYVVGNATASLV++IGL EGE C
Sbjct: 60 IFTSPRAVEAVERCLQKDTKAEVWKKSLKEKWNAKSVYVVGNATASLVNRIGLHTEGETC 119
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRE SALPLLFPCG LKRE LP+MLKDKG+P+ES+TVYQTIPHPGIQGN
Sbjct: 120 GNAEKLAEYICSREPSALPLLFPCGTLKREILPKMLKDKGIPLESVTVYQTIPHPGIQGN 179
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
L SYY+QQG+PASITFFSPSGL++SLKHIQELSGDSI QIKFVAIGPTTA+ALAAQGLPV
Sbjct: 180 LTSYYTQQGVPASITFFSPSGLTHSLKHIQELSGDSIGQIKFVAIGPTTAQALAAQGLPV 239
Query: 972 SC 977
SC
Sbjct: 240 SC 241
>ref|XP_002698611.1| PREDICTED: uroporphyrinogen III synthase [Bos taurus].
Length = 264
Score = 390 bits (1003), Expect = e-109
Identities = 194/242 (80%), Positives = 210/242 (86%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDD GQDPY+RELGLYGLEATLIPV HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDC-GQDPYVRELGLYGLEATLIPVLSFEFLSLPSLSEKLSHPEGYGGL 59
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAV+ CL+K K E W+ SLKEKWN+KSVYVVGNATASLV++IGL EGE C
Sbjct: 60 IFTSPRAVEAVERCLQKDTKAEVWKKSLKEKWNAKSVYVVGNATASLVNRIGLHTEGETC 119
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRE SALPLLFPCG LKRE LP+MLKDKG+P+ES+TVYQTIPHPGIQGN
Sbjct: 120 GNAEKLAEYICSREPSALPLLFPCGTLKREILPKMLKDKGIPLESVTVYQTIPHPGIQGN 179
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
L SYY+QQG+PASITFFSPSGL++SLKHIQELSGDSI QIKFVAIGPTTA+ALAAQGLPV
Sbjct: 180 LTSYYTQQGVPASITFFSPSGLTHSLKHIQELSGDSIGQIKFVAIGPTTAQALAAQGLPV 239
Query: 972 SC 977
SC
Sbjct: 240 SC 241
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,875,961
Number of extensions: 1066768
Number of successful extensions: 5249
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5222
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854192.1| PREDICTED: similar to Uroporphyrinogen-III synt... 391 e-109
Alignment gi|XP_854146.1| PREDICTED: similar to Uroporphyrinogen-III synt... 283 2e-76
>ref|XP_854192.1| PREDICTED: similar to Uroporphyrinogen-III synthase (UROS)
(Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane
hydrolyase [cyclizing]) (UROIIIS) [Canis familiaris].
Length = 264
Score = 391 bits (1004), Expect = e-109
Identities = 195/242 (80%), Positives = 211/242 (87%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDD GQDPYIRELGLYG EATLIPV HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDC-GQDPYIRELGLYGFEATLIPVLSFEFLSLPSFSEKLSHPEGYGGL 59
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAV+LCLEK NKTE W+ SLKEKWN+K+VYVVGNATASLV+KIGLD EG NC
Sbjct: 60 IFTSPRAVEAVELCLEKDNKTEVWKHSLKEKWNAKTVYVVGNATASLVNKIGLDAEGANC 119
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRES ALPLLFPCG +K E LP+MLKD+G+PMESITVYQ +PHPGIQ N
Sbjct: 120 GNAEKLAEYICSRESPALPLLFPCGTVKGEILPQMLKDRGIPMESITVYQKVPHPGIQVN 179
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
LNSYY++QGIPASITFFSPSGL+YSLKHIQELSGD+ID+IKF AIGP+TARALAAQGLPV
Sbjct: 180 LNSYYAKQGIPASITFFSPSGLAYSLKHIQELSGDNIDRIKFAAIGPSTARALAAQGLPV 239
Query: 972 SC 977
SC
Sbjct: 240 SC 241
>ref|XP_854146.1| PREDICTED: similar to Uroporphyrinogen-III synthase (UROS)
(Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane
hydrolyase [cyclizing]) (UROIIIS) [Canis familiaris].
Length = 217
Score = 283 bits (724), Expect = 2e-76
Identities = 137/174 (78%), Positives = 156/174 (89%)
Frame = +3
Query: 456 EAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENCGNAEKLAE 635
+ +KL L ++ W+ SLKEKWN+K+VYVVGNATASLV+KIGLD EG NCGNAEKLAE
Sbjct: 21 KTIKLKLTCNSRFTVWKHSLKEKWNAKTVYVVGNATASLVNKIGLDAEGANCGNAEKLAE 80
Query: 636 YICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGNLNSYYSQQ 815
YICSRES ALPLLFPCG +K E LP+MLKD+G+PMESITVYQ +PHPGIQ NLNSYY++Q
Sbjct: 81 YICSRESPALPLLFPCGTVKGEILPQMLKDRGIPMESITVYQKVPHPGIQVNLNSYYAKQ 140
Query: 816 GIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPVSC 977
GIPASITFFSPSGL+YSLKHIQELSGD+ID+IKF AIGP+TARALAAQGLPVSC
Sbjct: 141 GIPASITFFSPSGLAYSLKHIQELSGDNIDRIKFAAIGPSTARALAAQGLPVSC 194
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,524,399
Number of extensions: 1104596
Number of successful extensions: 5618
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5576
Number of HSP's successfully gapped: 2
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000366.1| uroporphyrinogen-III synthase [Homo sapiens]. 400 e-112
>ref|NP_000366.1| uroporphyrinogen-III synthase [Homo sapiens].
Length = 265
Score = 400 bits (1028), Expect = e-112
Identities = 202/242 (83%), Positives = 211/242 (87%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKD KEDD GQDPYIRELGLYGLEATLIPV HPE YGGL
Sbjct: 1 MKVLLLKDAKEDDC-GQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGL 59
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEA +LCLE+ NKTE WE SLKEKWN+KSVYVVGNATASLVSKIGLD EGE C
Sbjct: 60 IFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETC 119
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRESSALPLLFPCGNLKRE LP+ LKDKG+ MESITVYQT+ HPGIQGN
Sbjct: 120 GNAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGN 179
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
LNSYYSQQG+PASITFFSPSGL+YSLKHIQELSGD+IDQIKF AIGPTTARALAAQGLPV
Sbjct: 180 LNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPV 239
Query: 972 SC 977
SC
Sbjct: 240 SC 241
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,620,224
Number of extensions: 1070999
Number of successful extensions: 5211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5168
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033505.1| uroporphyrinogen-III synthase [Mus musculus]. 360 e-100
>ref|NP_033505.1| uroporphyrinogen-III synthase [Mus musculus].
Length = 265
Score = 360 bits (924), Expect = e-100
Identities = 180/242 (74%), Positives = 201/242 (83%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKD KEDD G DPYI+EL L GLEATLIPV HPEG+GGL
Sbjct: 1 MKVLLLKDAKEDDS-GLDPYIQELRLCGLEATLIPVLSFEFMSLPSLSEKLSHPEGFGGL 59
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAVKLCLEK NKTEAWE SLK++WN+KSVYVVG+ATASLV+KIGLD EG
Sbjct: 60 IFTSPRAVEAVKLCLEKDNKTEAWEKSLKDRWNAKSVYVVGSATASLVNKIGLDAEGAGS 119
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICS+ SS LPLLFPCG +K +TLP+MLKDKG+PMES+ VYQT+PHPGIQG+
Sbjct: 120 GNAEKLAEYICSKPSSELPLLFPCGTIKGDTLPKMLKDKGIPMESMHVYQTVPHPGIQGS 179
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
L SYY QGIPASITFFSPSGL YSL++IQ LSG S DQIKF+AIGP+T RA+AA+GLPV
Sbjct: 180 LKSYYEDQGIPASITFFSPSGLKYSLEYIQALSGSSFDQIKFIAIGPSTTRAMAAKGLPV 239
Query: 972 SC 977
SC
Sbjct: 240 SC 241
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,755,966
Number of extensions: 879029
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3812
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001925339.1| PREDICTED: uroporphyrinogen-III synthase iso... 450 e-127
Alignment gi|XP_001925313.1| PREDICTED: uroporphyrinogen-III synthase iso... 450 e-127
Alignment gi|XP_003133271.1| PREDICTED: uroporphyrinogen-III synthase [Su... 436 e-124
Alignment gi|XP_003133272.1| PREDICTED: uroporphyrinogen-III synthase [Su... 414 e-116
>ref|XP_001925339.1| PREDICTED: uroporphyrinogen-III synthase isoform 2 [Sus scrofa].
Length = 265
Score = 450 bits (1158), Expect = e-127
Identities = 226/242 (93%), Positives = 226/242 (93%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPV HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEGYGGL 60
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC
Sbjct: 61 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 120
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN
Sbjct: 121 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 180
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV
Sbjct: 181 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 240
Query: 972 SC 977
SC
Sbjct: 241 SC 242
>ref|XP_001925313.1| PREDICTED: uroporphyrinogen-III synthase isoform 1 [Sus scrofa].
Length = 265
Score = 450 bits (1158), Expect = e-127
Identities = 226/242 (93%), Positives = 226/242 (93%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPV HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEGYGGL 60
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC
Sbjct: 61 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 120
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN
Sbjct: 121 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 180
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV
Sbjct: 181 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 240
Query: 972 SC 977
SC
Sbjct: 241 SC 242
>ref|XP_003133271.1| PREDICTED: uroporphyrinogen-III synthase [Sus scrofa].
Length = 269
Score = 436 bits (1120), Expect(2) = e-124
Identities = 222/252 (88%), Positives = 222/252 (88%)
Frame = +3
Query: 222 RVPYKDGPATMKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXX 401
RVPYKDGPATMKVLLLKDPKEDDDRGQDPYIR
Sbjct: 23 RVPYKDGPATMKVLLLKDPKEDDDRGQDPYIR---------------------------- 54
Query: 402 XXHPEGYGGLIFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSK 581
HPEGYGGLIFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSK
Sbjct: 55 LSHPEGYGGLIFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSK 114
Query: 582 IGLDPEGENCGNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQ 761
IGLDPEGENCGNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQ
Sbjct: 115 IGLDPEGENCGNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQ 174
Query: 762 TIPHPGIQGNLNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTA 941
TIPHPGIQGNLNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTA
Sbjct: 175 TIPHPGIQGNLNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTA 234
Query: 942 RALAAQGLPVSC 977
RALAAQGLPVSC
Sbjct: 235 RALAAQGLPVSC 246
Score = 29.6 bits (65), Expect(2) = e-124
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +2
Query: 194 MPAECFTCPAS 226
MPAECFTCPAS
Sbjct: 1 MPAECFTCPAS 11
>ref|XP_003133272.1| PREDICTED: uroporphyrinogen-III synthase [Sus scrofa].
Length = 237
Score = 414 bits (1064), Expect = e-116
Identities = 212/242 (87%), Positives = 212/242 (87%)
Frame = +3
Query: 252 MKVLLLKDPKEDDDRGQDPYIRELGLYGLEATLIPVXXXXXXXXXXXXXXXXHPEGYGGL 431
MKVLLLKDPKEDDDRGQDPYIR HPEGYGGL
Sbjct: 1 MKVLLLKDPKEDDDRGQDPYIR----------------------------LSHPEGYGGL 32
Query: 432 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 611
IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC
Sbjct: 33 IFTSPRAVEAVKLCLEKANKTEAWETSLKEKWNSKSVYVVGNATASLVSKIGLDPEGENC 92
Query: 612 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 791
GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN
Sbjct: 93 GNAEKLAEYICSRESSALPLLFPCGNLKRETLPRMLKDKGVPMESITVYQTIPHPGIQGN 152
Query: 792 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 971
LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV
Sbjct: 153 LNSYYSQQGIPASITFFSPSGLSYSLKHIQELSGDSIDQIKFVAIGPTTARALAAQGLPV 212
Query: 972 SC 977
SC
Sbjct: 213 SC 214
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,183,946
Number of extensions: 691467
Number of successful extensions: 3801
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3676
Number of HSP's successfully gapped: 7
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002853
(977 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 446 e-122
>Sscrofa_Chr14
|| Length = 153851969
Score = 446 bits (225), Expect = e-122
Identities = 225/225 (100%)
Strand = Plus / Minus
Query: 1 gcgcgagcttcagctgagcggtgcgccggctccgcgacccctggagctggcgctggcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146760500 gcgcgagcttcagctgagcggtgcgccggctccgcgacccctggagctggcgctggcgct 146760441
Query: 61 ggtgctgggggcccggcgtgggccgtcgccatggcagcggaagccacgtggtgaaggggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146760440 ggtgctgggggcccggcgtgggccgtcgccatggcagcggaagccacgtggtgaaggggc 146760381
Query: 121 cgacccccggactggtctgtccggcgggctcgctgcctgcgggcgggaaccctgagattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146760380 cgacccccggactggtctgtccggcgggctcgctgcctgcgggcgggaaccctgagattc 146760321
Query: 181 tgcccccgactggatgcctgccgagtgcttcacttgcccggcgag 225
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146760320 tgcccccgactggatgcctgccgagtgcttcacttgcccggcgag 146760276
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 812 gcagggcattccagccagcatcacgtttttcagcccctctggcctgtcgtacagtctcaa 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146734624 gcagggcattccagccagcatcacgtttttcagcccctctggcctgtcgtacagtctcaa 146734565
Query: 872 gcatattcaggaattatctggtgacagcattgaccagattaag 914
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146734564 gcatattcaggaattatctggtgacagcattgaccagattaag 146734522
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 400 agctgtctcatcctgaaggttacgggggcctcatttttaccagccccagagcagtggaag 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146746990 agctgtctcatcctgaaggttacgggggcctcatttttaccagccccagagcagtggaag 146746931
Query: 460 cggtgaagctatgtttggagaaggccaataaaactgaag 498
|||||||||||||||||||||||||||||||||||||||
Sbjct: 146746930 cggtgaagctatgtttggagaaggccaataaaactgaag 146746892
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 224 agtgccctataaggacggcccagcaacaatgaaggtccttttactgaaagaccctaagga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146748850 agtgccctataaggacggcccagcaacaatgaaggtccttttactgaaagaccctaagga 146748791
Query: 284 ggacgacgaccgcggccaggacccctacatcaggg 318
|||||||||||||||||||||||||||||||||||
Sbjct: 146748790 ggacgacgaccgcggccaggacccctacatcaggg 146748756
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 728 aggggtccccatggagagcataactgtctaccagacgattccgcaccccgggatccaggg 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146735590 aggggtccccatggagagcataactgtctaccagacgattccgcaccccgggatccaggg 146735531
Query: 788 gaacctcaacagctactattcccagcagg 816
|||||||||||||||||||||||||||||
Sbjct: 146735530 gaacctcaacagctactattcccagcagg 146735502
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 317 ggaattaggactgtatgggcttgaagccactttgatccctgttctgtcctttgagtttct 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146748584 ggaattaggactgtatgggcttgaagccactttgatccctgttctgtcctttgagtttct 146748525
Query: 377 gtctcttcccagtttctcggagaag 401
|||||||||||||||||||||||||
Sbjct: 146748524 gtctcttcccagtttctcggagaag 146748500
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 649 gggagtcgtcagctctgcctcttctctttccctgcggaaacctcaaacgagaaaccctgc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146736470 gggagtcgtcagctctgcctcttctctttccctgcggaaacctcaaacgagaaaccctgc 146736411
Query: 709 cacgtatgctcaaggacaaagg 730
||||||||||||||||||||||
Sbjct: 146736410 cacgtatgctcaaggacaaagg 146736389
Score = 155 bits (78), Expect = 5e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 572 agtgagtaaaattggcctggaccctgaaggagaaaactgtggaaacgcagaaaagcttgc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146739712 agtgagtaaaattggcctggaccctgaaggagaaaactgtggaaacgcagaaaagcttgc 146739653
Query: 632 agaatacatttgttcccg 649
||||||||||||||||||
Sbjct: 146739652 agaatacatttgttcccg 146739635
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 497 agcctgggaaacgtctctgaaagaaaaatggaattcgaagtcagtgtatgtggtgggaaa 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146744544 agcctgggaaacgtctctgaaagaaaaatggaattcgaagtcagtgtatgtggtgggaaa 146744485
Query: 557 tgctactgcttctctag 573
|||||||||||||||||
Sbjct: 146744484 tgctactgcttctctag 146744468
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 913 agttcgtggccatcggccccaccacggcccgcgccctggccgcgcagggcctgcccgtga 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146731428 agttcgtggccatcggccccaccacggcccgcgccctggccgcgcagggcctgcccgtga 146731369
Query: 973 gctgc 977
|||||
Sbjct: 146731368 gctgc 146731364
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 26,583,500
Number of extensions: 186
Number of successful extensions: 186
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 10
Length of query: 977
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 956
Effective length of database: 2,808,413,156
Effective search space: 2684842977136
Effective search space used: 2684842977136
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)