Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068631.1| transmembrane protein 50A [Bos taurus]. 320 1e-87
Alignment gi|NP_001029958.1| transmembrane protein 50B [Bos taurus]. 245 6e-65
>ref|NP_001068631.1| transmembrane protein 50A [Bos taurus].
Length = 157
Score = 320 bits (820), Expect = 1e-87
Identities = 152/157 (96%), Positives = 154/157 (98%)
Frame = +3
Query: 165 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 344
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYP M+EFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPRMDEFNHSYHACG 60
Query: 345 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 524
VIAT+AFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATVAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 525 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 635
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_001029958.1| transmembrane protein 50B [Bos taurus].
Length = 158
Score = 245 bits (625), Expect = 6e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 165 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 338
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 339 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 518
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 519 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 632
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,301,306
Number of extensions: 1112782
Number of successful extensions: 3992
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3988
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 257
Effective length of database: 14,273,310
Effective search space: 3668240670
Effective search space used: 3668240670
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A... 322 4e-88
Alignment gi|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B... 245 6e-65
>ref|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A (Small membrane
protein 1) [Canis familiaris].
Length = 157
Score = 322 bits (825), Expect = 4e-88
Identities = 153/157 (97%), Positives = 155/157 (98%)
Frame = +3
Query: 165 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 344
MSGFLEGLRCSECIDWGEKRNTIAS+AAGVLFFTGWWIIIDAAVIYP+MEEFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASVAAGVLFFTGWWIIIDAAVIYPTMEEFNHSYHACG 60
Query: 345 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 524
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 525 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 635
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B (HCV
p7-transregulated protein 3) [Canis familiaris].
Length = 158
Score = 245 bits (625), Expect = 6e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 165 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 338
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 339 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 518
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 519 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 632
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,989,086
Number of extensions: 1146349
Number of successful extensions: 3936
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3926
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 256
Effective length of database: 15,407,560
Effective search space: 3944335360
Effective search space used: 3944335360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055128.1| transmembrane protein 50A [Homo sapiens]. 319 3e-87
Alignment gi|NP_006125.2| transmembrane protein 50B [Homo sapiens]. 245 6e-65
>ref|NP_055128.1| transmembrane protein 50A [Homo sapiens].
Length = 157
Score = 319 bits (817), Expect = 3e-87
Identities = 151/157 (96%), Positives = 155/157 (98%)
Frame = +3
Query: 165 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 344
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYP+M++FNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG 60
Query: 345 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 524
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLF+GFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV 120
Query: 525 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 635
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_006125.2| transmembrane protein 50B [Homo sapiens].
Length = 158
Score = 245 bits (625), Expect = 6e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 165 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 338
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 339 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 518
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 519 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 632
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,220,946
Number of extensions: 1129756
Number of successful extensions: 3908
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3902
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 256
Effective length of database: 14,868,908
Effective search space: 3806440448
Effective search space used: 3806440448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082211.1| transmembrane protein 50A [Mus musculus]. 313 1e-85
Alignment gi|NP_084294.1| transmembrane protein 50B [Mus musculus]. 244 6e-65
>ref|NP_082211.1| transmembrane protein 50A [Mus musculus].
Length = 157
Score = 313 bits (802), Expect = 1e-85
Identities = 148/157 (94%), Positives = 152/157 (96%)
Frame = +3
Query: 165 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 344
MSGFLEG RCSEC+DWGEKRNTIASIAAGVLFFTGWWIIIDAAV+YP M++FNHSYH CG
Sbjct: 1 MSGFLEGSRCSECMDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCG 60
Query: 345 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 524
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 525 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 635
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKDVVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_084294.1| transmembrane protein 50B [Mus musculus].
Length = 158
Score = 244 bits (624), Expect = 6e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 165 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 338
M+GFL+ R EC IDW E+RNT+AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 339 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 518
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 519 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 632
YV + VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNIDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,095,452
Number of extensions: 964273
Number of successful extensions: 3152
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3146
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 257
Effective length of database: 12,523,851
Effective search space: 3218629707
Effective search space used: 3218629707
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230555.1| transmembrane protein 50A [Sus scrofa]. 328 4e-90
>ref|NP_001230555.1| transmembrane protein 50A [Sus scrofa].
Length = 157
Score = 328 bits (840), Expect = 4e-90
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = +3
Query: 165 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 344
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 60
Query: 345 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 524
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 525 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 635
AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,520,193
Number of extensions: 712033
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2582
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,854,232
Effective search space: 2302100320
Effective search space used: 2302100320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002854
(1081 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 827 0.0
gb|GL893200.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 182 3e-43
Sscrofa_Chr01 96 5e-17
Sscrofa_Chr15 92 7e-16
>gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3268
Length = 101843
Score = 827 bits (417), Expect = 0.0
Identities = 436/441 (98%), Gaps = 1/441 (0%)
Strand = Plus / Plus
Query: 592 gaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaacagctgattg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53138 gaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaacagctgattg 53197
Query: 652 attactgcacagcagccctgcatgggtattttttactactcactcccagtcttttgtaat 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53198 attactgcacagcagccctgcatgggtattttttactactcactcccagtcttttgtaat 53257
Query: 712 gccattttctaaacttatttctgagtgtagtctcaacttaaatttgtataatacaaaatc 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53258 gccattttctaaacttatttctgagtgtagtctcaacttaaatttgtataatacaaaatc 53317
Query: 772 atgagaacttcctatttaaacaacaaattctattgtatgcatttgatgaacttgtaaaaa 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53318 atgagaacttcctatttaaacaacaaattctattgtatgcatttgatgaacttgtaaaaa 53377
Query: 832 tgctaaagaaaaatacttcacatgagaaatttttattacgttttatcatggtataatttg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53378 tgctaaagaaaaatacttcacatgagaaatttttattacgttttatcatggtataatttg 53437
Query: 892 tcaaaataaaaataaatcacgaaagaaattatggaagcatcttatatgagtatttgtcat 951
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 53438 tcaaaataaaaataaatcacgaaagaaattatggaagaatcttatatgagtatttgtcat 53497
Query: 952 gtccaaggtccaaaatgcaattaaaactgctctgaaaattttatgtgtttattt-aatgt 1010
|||||||||||||||||||||||||| ||||||||| |||| |||||||||||| |||||
Sbjct: 53498 gtccaaggtccaaaatgcaattaaaagtgctctgaagatttaatgtgtttatttaaatgt 53557
Query: 1011 ggcctcttctgtgtcaagtgt 1031
|||||||||||||||||||||
Sbjct: 53558 ggcctcttctgtgtcaagtgt 53578
Score = 270 bits (136), Expect = 1e-69
Identities = 142/144 (98%)
Strand = Plus / Plus
Query: 1 ttcctgccccgggggcggtgctgttcgatccgggtatcccgcggcctgtggctgttttgc 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 37930 ttcctgccccgggggcggtgctgttcgatccgggtatccggcggcctgtggctgttttgc 37989
Query: 61 tttcttggctggaactggggaagtggggcaaccccgcgcggggcgacaccgggttccgga 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 37990 tttcttggctggaactggggaagtggggcaaccccgcgcggggcaacaccgggttccgga 38049
Query: 121 ccgactgcacgggcggggctggac 144
||||||||||||||||||||||||
Sbjct: 38050 ccgactgcacgggcggggctggac 38073
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 437 aggcgctcgcatttggctgttcattggcttcatgttggcctttggctctctgattgcatc 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45205 aggcgctcgcatttggctgttcattggcttcatgttggcctttggctctctgattgcatc 45264
Query: 497 aatgtggattctctttggagggtacgttgctaaag 531
|||||||||||||||||||||||||||||||||||
Sbjct: 45265 aatgtggattctctttggagggtacgttgctaaag 45299
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 371 gattaatgcagtatcgaatggacaagtccgaggtgatagctacagtgaaggttgcctggg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906 gattaatgcagtatcgaatggacaagtccgaggtgatagctacagtgaaggttgcctggg 43965
Query: 431 tcaaacagg 439
|||||||||
Sbjct: 43966 tcaaacagg 43974
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 530 agaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttcatcttttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48143 agaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttcatcttttt 48202
Query: 590 tgg 592
|||
Sbjct: 48203 tgg 48205
Score = 111 bits (56), Expect = 8e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 316 agttcaaccactcctaccacgcctgtggtgttatagcaaccatagccttcctaatg 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41715 agttcaaccactcctaccacgcctgtggtgttatagcaaccatagccttcctaatg 41770
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 258 ttttttaccggctggtggattatcatagatgccgctgtcatttatc 303
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41569 ttttttaccggctggtggattatcatagatgccgctgtcatttatc 41614
>gb|GL893200.1| Sus scrofa unplaced genomic scaffold chrU_scaffold199
Length = 247
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 166 tgtctggatttctagaaggcttgagatgctcagaatgcattgattggggagaaaagcgaa 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtctggatttctagaaggcttgagatgctcagaatgcattgattggggagaaaagcgaa 166
Query: 226 atactatcgcttccattgccgccggtgttcta 257
||||||||||||||||||||||||||||||||
Sbjct: 165 atactatcgcttccattgccgccggtgttcta 134
>Sscrofa_Chr01
|| Length = 315321322
Score = 95.6 bits (48), Expect = 5e-17
Identities = 129/156 (82%)
Strand = Plus / Plus
Query: 523 ttgctaaagaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttca 582
|||||||||||||| ||| |||| ||||||||||||| |||||||||| |||| |||
Sbjct: 226993786 ttgctaaagaaaaagccatagtacgccctggaattgctatatttttccagaatgtcttac 226993845
Query: 583 tcttttttggaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaac 642
||||||| ||||| |||||||||||||||||| || || | |||||||| ||| |||
Sbjct: 226993846 ccttttttagaggattggtttttaagtttggccacagtgacaatttatggcagtgagaac 226993905
Query: 643 agctgattgattactgcacagcagccctgcatgggt 678
| |||||| || ||||||||||||||| |||||
Sbjct: 226993906 acctgatttcctatagcacagcagccctgcctgggt 226993941
Score = 79.8 bits (40), Expect = 3e-12
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 674 tgggtattttttactactcactcccagtcttttgtaatgccattttctaaacttatttct 733
||||| ||||| ||| ||||||| || |||| ||||||| |||||||||||| ||||| |
Sbjct: 226993960 tgggtttttttaactgctcactctcaatcttctgtaatgtcattttctaaacgtattttt 226994019
Query: 734 gagtgtagtctcaacttaaatttgtataatac 765
||||| ||||||| |||||| |||| ||||||
Sbjct: 226994020 gagtgcagtctcatcttaaaattgtgtaatac 226994051
>Sscrofa_Chr15
|| Length = 157681621
Score = 91.7 bits (46), Expect = 7e-16
Identities = 95/109 (87%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 690 ctcactcccagtcttttgtaatgccattttctaaacttatttctgagtgtagtctcaact 749
|||||| ||| ||||||||||||| ||||||||||| | |||||||||||||||| ||
Sbjct: 39481467 ctcactaccaatcttttgtaatgctattttctaaac--acgtctgagtgtagtctcagct 39481410
Query: 750 taaatttgtataatac-aaaatcatgagaacttcctatttaaacaacaa 797
||||||||||| |||| |||||| |||| |||||||| ||||||||||
Sbjct: 39481409 taaatttgtatgatactcaaatcaggagaccttcctatgtaaacaacaa 39481361
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,274,190
Number of extensions: 407
Number of successful extensions: 407
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 11
Length of query: 1081
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1060
Effective length of database: 2,808,413,156
Effective search space: 2976917945360
Effective search space used: 2976917945360
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)