Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068631.1| transmembrane protein 50A [Bos taurus]. 320 1e-87
Alignment gi|NP_001029958.1| transmembrane protein 50B [Bos taurus]. 245 4e-65
>ref|NP_001068631.1| transmembrane protein 50A [Bos taurus].
Length = 157
Score = 320 bits (820), Expect = 1e-87
Identities = 152/157 (96%), Positives = 154/157 (98%)
Frame = +3
Query: 138 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 317
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYP M+EFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPRMDEFNHSYHACG 60
Query: 318 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 497
VIAT+AFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATVAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 498 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 608
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_001029958.1| transmembrane protein 50B [Bos taurus].
Length = 158
Score = 245 bits (625), Expect = 4e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 138 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 311
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 312 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 491
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 492 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 605
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,061,033
Number of extensions: 898605
Number of successful extensions: 3529
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3526
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,306,398
Effective search space: 2789747610
Effective search space used: 2789747610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A... 322 3e-88
Alignment gi|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B... 245 5e-65
>ref|XP_535354.1| PREDICTED: similar to Transmembrane protein 50A (Small membrane
protein 1) [Canis familiaris].
Length = 157
Score = 322 bits (825), Expect = 3e-88
Identities = 153/157 (97%), Positives = 155/157 (98%)
Frame = +3
Query: 138 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 317
MSGFLEGLRCSECIDWGEKRNTIAS+AAGVLFFTGWWIIIDAAVIYP+MEEFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASVAAGVLFFTGWWIIIDAAVIYPTMEEFNHSYHACG 60
Query: 318 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 497
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 498 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 608
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKAIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|XP_535582.1| PREDICTED: similar to Transmembrane protein 50B (HCV
p7-transregulated protein 3) [Canis familiaris].
Length = 158
Score = 245 bits (625), Expect = 5e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 138 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 311
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 312 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 491
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 492 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 605
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,506,064
Number of extensions: 924670
Number of successful extensions: 3429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3425
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 195
Effective length of database: 15,474,232
Effective search space: 3017475240
Effective search space used: 3017475240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055128.1| transmembrane protein 50A [Homo sapiens]. 319 2e-87
Alignment gi|NP_006125.2| transmembrane protein 50B [Homo sapiens]. 245 4e-65
>ref|NP_055128.1| transmembrane protein 50A [Homo sapiens].
Length = 157
Score = 319 bits (817), Expect = 2e-87
Identities = 151/157 (96%), Positives = 155/157 (98%)
Frame = +3
Query: 138 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 317
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYP+M++FNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACG 60
Query: 318 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 497
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLF+GFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGGYV 120
Query: 498 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 608
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_006125.2| transmembrane protein 50B [Homo sapiens].
Length = 158
Score = 245 bits (625), Expect = 4e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 138 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 311
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 312 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 491
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 492 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 605
YV + T VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,913,230
Number of extensions: 915570
Number of successful extensions: 3444
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3435
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 195
Effective length of database: 14,934,836
Effective search space: 2912293020
Effective search space used: 2912293020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082211.1| transmembrane protein 50A [Mus musculus]. 313 1e-85
Alignment gi|NP_084294.1| transmembrane protein 50B [Mus musculus]. 244 5e-65
>ref|NP_082211.1| transmembrane protein 50A [Mus musculus].
Length = 157
Score = 313 bits (802), Expect = 1e-85
Identities = 148/157 (94%), Positives = 152/157 (96%)
Frame = +3
Query: 138 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 317
MSGFLEG RCSEC+DWGEKRNTIASIAAGVLFFTGWWIIIDAAV+YP M++FNHSYH CG
Sbjct: 1 MSGFLEGSRCSECMDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCG 60
Query: 318 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 497
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 498 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 608
AKEK VYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKDVVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
>ref|NP_084294.1| transmembrane protein 50B [Mus musculus].
Length = 158
Score = 244 bits (624), Expect = 5e-65
Identities = 111/158 (70%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Frame = +3
Query: 138 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHA 311
M+GFL+ R EC IDW E+RNT+AS+ AG+LFFTGWWI+IDAAV+YP E+ NH++H
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 312 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGG 491
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLFIGFML FGSLIASMWILFG
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 492 YVAKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 605
YV + VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 121 YVT-QNIDVYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,872,755
Number of extensions: 785674
Number of successful extensions: 2862
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2860
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 196
Effective length of database: 12,583,923
Effective search space: 2466448908
Effective search space used: 2466448908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230555.1| transmembrane protein 50A [Sus scrofa]. 328 3e-90
>ref|NP_001230555.1| transmembrane protein 50A [Sus scrofa].
Length = 157
Score = 328 bits (840), Expect = 3e-90
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = +3
Query: 138 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 317
MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG
Sbjct: 1 MSGFLEGLRCSECIDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPSMEEFNHSYHACG 60
Query: 318 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 497
VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV
Sbjct: 61 VIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYV 120
Query: 498 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 608
AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ
Sbjct: 121 AKEKTTVYPGIAVFFQNAFIFFGGLVFKFGRTEDLWQ 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,864,004
Number of extensions: 573934
Number of successful extensions: 2279
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2273
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,904,026
Effective search space: 1771901174
Effective search space used: 1771901174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002856
(891 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 618 e-174
gb|GL893200.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 182 2e-43
Sscrofa_Chr01 96 4e-17
Sscrofa_Chr15 92 6e-16
>gb|GL894621.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3268
Length = 101843
Score = 618 bits (312), Expect = e-174
Identities = 325/328 (99%), Gaps = 1/328 (0%)
Strand = Plus / Plus
Query: 565 gaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaacagctgattg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53138 gaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaacagctgattg 53197
Query: 625 attactgcacagcagccctgcatgggtattttttactactcactcccagtcttttgtaat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53198 attactgcacagcagccctgcatgggtattttttactactcactcccagtcttttgtaat 53257
Query: 685 gccattttctaaacttatttctgagtgtagtctcaacttaaatttgtataatacaaaatc 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53258 gccattttctaaacttatttctgagtgtagtctcaacttaaatttgtataatacaaaatc 53317
Query: 745 atgagaacttcctatttaaacaacaaattctattgtatgcatttgatgaacttgtaaaaa 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53318 atgagaacttcctatttaaacaacaaattctattgtatgcatttgatgaacttgtaaaaa 53377
Query: 805 tgctaaagaaaaatacttcacatgagaaa-ttttattacgttttatcatggtataatttg 863
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 53378 tgctaaagaaaaatacttcacatgagaaatttttattacgttttatcatggtataatttg 53437
Query: 864 tcaaaataaaaaataatcacgaaagaaa 891
|||||||||||| ||||||||||||||
Sbjct: 53438 tcaaaataaaaataaatcacgaaagaaa 53465
Score = 188 bits (95), Expect = 4e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 410 aggcgctcgcatttggctgttcattggcttcatgttggcctttggctctctgattgcatc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45205 aggcgctcgcatttggctgttcattggcttcatgttggcctttggctctctgattgcatc 45264
Query: 470 aatgtggattctctttggagggtacgttgctaaag 504
|||||||||||||||||||||||||||||||||||
Sbjct: 45265 aatgtggattctctttggagggtacgttgctaaag 45299
Score = 172 bits (87), Expect = 2e-40
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 gttttgctttcttggctggaactggggaagtggggcaaccccgcgcggggcgacaccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 37983 gttttgctttcttggctggaactggggaagtggggcaaccccgcgcggggcaacaccggg 38042
Query: 61 ttccggaccgactgcacgggcggggctggac 91
|||||||||||||||||||||||||||||||
Sbjct: 38043 ttccggaccgactgcacgggcggggctggac 38073
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 344 gattaatgcagtatcgaatggacaagtccgaggtgatagctacagtgaaggttgcctggg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43906 gattaatgcagtatcgaatggacaagtccgaggtgatagctacagtgaaggttgcctggg 43965
Query: 404 tcaaacagg 412
|||||||||
Sbjct: 43966 tcaaacagg 43974
Score = 125 bits (63), Expect = 4e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 503 agaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttcatcttttt 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48143 agaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttcatcttttt 48202
Query: 563 tgg 565
|||
Sbjct: 48203 tgg 48205
Score = 111 bits (56), Expect = 7e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 289 agttcaaccactcctaccacgcctgtggtgttatagcaaccatagccttcctaatg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41715 agttcaaccactcctaccacgcctgtggtgttatagcaaccatagccttcctaatg 41770
Score = 91.7 bits (46), Expect = 6e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 231 ttttttaccggctggtggattatcatagatgccgctgtcatttatc 276
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41569 ttttttaccggctggtggattatcatagatgccgctgtcatttatc 41614
>gb|GL893200.1| Sus scrofa unplaced genomic scaffold chrU_scaffold199
Length = 247
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 139 tgtctggatttctagaaggcttgagatgctcagaatgcattgattggggagaaaagcgaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtctggatttctagaaggcttgagatgctcagaatgcattgattggggagaaaagcgaa 166
Query: 199 atactatcgcttccattgccgccggtgttcta 230
||||||||||||||||||||||||||||||||
Sbjct: 165 atactatcgcttccattgccgccggtgttcta 134
>Sscrofa_Chr01
|| Length = 315321322
Score = 95.6 bits (48), Expect = 4e-17
Identities = 129/156 (82%)
Strand = Plus / Plus
Query: 496 ttgctaaagaaaaaaccacagtataccctggaattgctgtatttttccaaaatgccttca 555
|||||||||||||| ||| |||| ||||||||||||| |||||||||| |||| |||
Sbjct: 226993786 ttgctaaagaaaaagccatagtacgccctggaattgctatatttttccagaatgtcttac 226993845
Query: 556 tcttttttggaggactggtttttaagtttggccgcaccgaagacttatggcaatgaaaac 615
||||||| ||||| |||||||||||||||||| || || | |||||||| ||| |||
Sbjct: 226993846 ccttttttagaggattggtttttaagtttggccacagtgacaatttatggcagtgagaac 226993905
Query: 616 agctgattgattactgcacagcagccctgcatgggt 651
| |||||| || ||||||||||||||| |||||
Sbjct: 226993906 acctgatttcctatagcacagcagccctgcctgggt 226993941
Score = 79.8 bits (40), Expect = 2e-12
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 647 tgggtattttttactactcactcccagtcttttgtaatgccattttctaaacttatttct 706
||||| ||||| ||| ||||||| || |||| ||||||| |||||||||||| ||||| |
Sbjct: 226993960 tgggtttttttaactgctcactctcaatcttctgtaatgtcattttctaaacgtattttt 226994019
Query: 707 gagtgtagtctcaacttaaatttgtataatac 738
||||| ||||||| |||||| |||| ||||||
Sbjct: 226994020 gagtgcagtctcatcttaaaattgtgtaatac 226994051
>Sscrofa_Chr15
|| Length = 157681621
Score = 91.7 bits (46), Expect = 6e-16
Identities = 95/109 (87%), Gaps = 3/109 (2%)
Strand = Plus / Minus
Query: 663 ctcactcccagtcttttgtaatgccattttctaaacttatttctgagtgtagtctcaact 722
|||||| ||| ||||||||||||| ||||||||||| | |||||||||||||||| ||
Sbjct: 39481467 ctcactaccaatcttttgtaatgctattttctaaac--acgtctgagtgtagtctcagct 39481410
Query: 723 taaatttgtataatac-aaaatcatgagaacttcctatttaaacaacaa 770
||||||||||| |||| |||||| |||| |||||||| ||||||||||
Sbjct: 39481409 taaatttgtatgatactcaaatcaggagaccttcctatgtaaacaacaa 39481361
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,028,456
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 11
Length of query: 891
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 870
Effective length of database: 2,808,413,156
Effective search space: 2443319445720
Effective search space used: 2443319445720
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)