Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 404 e-113
Alignment gi|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bo... 403 e-112
Alignment gi|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 368 e-102
Alignment gi|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus]. 255 5e-68
Alignment gi|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 161 1e-39
>ref|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 389
Score = 404 bits (1037), Expect = e-113
Identities = 201/284 (70%), Positives = 228/284 (80%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
+TP LDKFIEDHLLP+ FRMQVKEAIDI+C FLKERCF+ H VR
Sbjct: 5 NTPAGSLDKFIEDHLLPDEEFRMQVKEAIDIICTFLKERCFRCAPHRVRVSKVVKGGSSG 64
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFLT LTSF++QL+ R EFI+EIRRQLEACQRE+ F+V FEVQ +
Sbjct: 65 KGTTLRGRSDADLVVFLTNLTSFQEQLERRGEFIEEIRRQLEACQREETFEVKFEVQKRQ 124
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
ENPRALSFVL SP+L Q VEFDVLPAFDALGQ T GY+P+ +YV+LIQECK +EGE
Sbjct: 125 WENPRALSFVLRSPKLNQAVEFDVLPAFDALGQLTKGYRPDSRVYVRLIQECKYLKREGE 184
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FS CFTELQRDFL+NRPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG
Sbjct: 185 FSPCFTELQRDFLKNRPTKLKSLIRLVKHWYQLCKEQLGKPLPPQYALELLTVYAWEQGC 244
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYLT 1013
KT F TAQGFQTVL+LVLK++KLCI+W+ Y+ +NP+I YLT
Sbjct: 245 NKTGFITAQGFQTVLKLVLKYQKLCIYWEKNYNSENPIIEEYLT 288
>ref|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus].
Length = 352
Score = 403 bits (1035), Expect = e-112
Identities = 200/283 (70%), Positives = 227/283 (80%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
DTP LDKFIEDHLL N FR QVK+AIDI+C FLKERCF+ H R
Sbjct: 6 DTPAESLDKFIEDHLLSNEEFRTQVKQAIDIICTFLKERCFRCAPH--RVSKVVKGGSSG 63
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFLT LTSF +QL+ R EFI+EIRRQLEACQRE+ F+V EVQ +
Sbjct: 64 KGTTLRGRSDADLVVFLTNLTSFREQLERRGEFIEEIRRQLEACQREKTFEVKSEVQKRQ 123
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
ENPRALSFVL SP+L QEVEFDVLPAFDALGQ T GY+P+P+IYV+LIQEC+++ +EGE
Sbjct: 124 WENPRALSFVLRSPKLDQEVEFDVLPAFDALGQLTKGYRPDPQIYVKLIQECENQRREGE 183
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FS CFTELQRDFL+ RP KLKSLIRLVKHWYQ CK H N LPPQYALELLTVYAWEQGS
Sbjct: 184 FSPCFTELQRDFLKERPAKLKSLIRLVKHWYQLCKMKHKNNLPPQYALELLTVYAWEQGS 243
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
K +FSTAQGF+TVLEL+LKH+ LCI+WK YYD +N +I +YL
Sbjct: 244 AKPEFSTAQGFRTVLELILKHQDLCIYWKKYYDTENSIIRQYL 286
>ref|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 362
Score = 368 bits (945), Expect = e-102
Identities = 184/282 (65%), Positives = 212/282 (75%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
T LDKFI+DHLLP+ F+ QV EAIDI+C FLKE CFQ + HPVR
Sbjct: 7 TQANKLDKFIKDHLLPHEEFQRQVNEAIDIICTFLKETCFQESTHPVRVSKVVKGGSSGK 66
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
TTL+ SDADLVVFLT LTSF++ + R FI+EIRRQLEA QR++ F+V FEV R+
Sbjct: 67 GTTLKDLSDADLVVFLTNLTSFQENFEHRVRFIKEIRRQLEAYQRQKTFEVEFEVLKQRK 126
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEF 704
RALSFVL SP Q V+FDVLPAFDAL Q T YKPNP+IYVQLIQEC++ +EGEF
Sbjct: 127 RKRRALSFVLRSPWFCQGVKFDVLPAFDALAQVTEDYKPNPQIYVQLIQECENLRREGEF 186
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSG 884
S CFTELQR FL+ RP KLKSLIRLVKHWYQ CKK HG KLP QYALELLT+YAWEQ
Sbjct: 187 SPCFTELQRAFLKERPAKLKSLIRLVKHWYQQCKKRHGKKLPSQYALELLTIYAWEQEGS 246
Query: 885 KTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
KT F TA+GF+TVLELVLKH+ LCI+WK YYDF+NP+I + L
Sbjct: 247 KTKFRTAEGFRTVLELVLKHQDLCIYWKKYYDFENPIITQCL 288
>ref|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus].
Length = 714
Score = 255 bits (651), Expect = 5e-68
Identities = 135/286 (47%), Positives = 181/286 (63%), Gaps = 4/286 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKF++D L PN F+ Q+K+A+ I+C FL+E CF+ H
Sbjct: 344 TPGHLLDKFVKDFLQPNQTFQDQIKKALKIICSFLEENCFR---HSTTKIQVIQGGSTVK 400
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ SDA LVVF L S+ R I+EI QLEAC++E+ F+V FE+ +
Sbjct: 401 GTALKTGSDASLVVFANSLKSYTSPKNERYNIIKEIHEQLEACRQEKDFEVKFEIS--KW 458
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGK--EG 698
+ P LSF L S L + V+FDVLPAF+ALG+ G P+P Y +LI K EG
Sbjct: 459 KPPWVLSFTLKSKVLNESVDFDVLPAFNALGELKSGSTPSPRTYTELIHLYKPSDVFLEG 518
Query: 699 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWE 872
EFS CFT+LQR+F+R+ P KLK LIRL+KHWY+ C+K K LPP+YALELLT+YAWE
Sbjct: 519 EFSVCFTKLQRNFVRSLPLKLKDLIRLLKHWYKGCEKKLKQKGSLPPKYALELLTIYAWE 578
Query: 873 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+GSG DF A+GF+TVLELV++++ LC+FW Y F + ++ +L
Sbjct: 579 KGSGAQDFDMAEGFRTVLELVIQYQHLCVFWTVNYSFDDEILRNFL 624
Score = 184 bits (468), Expect = 8e-47
Identities = 110/285 (38%), Positives = 159/285 (55%), Gaps = 2/285 (0%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
+ P L++FI++HL P+ + + +++D +C L+E C T V
Sbjct: 10 EKPSEKLEEFIQNHLRPSEDCQKDIDQSVDTICEVLQEPCPSLTVTGVAKGGSYGRR--- 66
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
T LRG SD LVVF L F+DQ + + E + +I Q++ C+ K E+Q+
Sbjct: 67 --TVLRGNSDGILVVFFGDLEQFQDQEKRQYELLSKIWAQMKHCESTWKLAAKMELQNTN 124
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKS-RGKEG 698
R + ++ LS+ Q Q + F+VLPAF+ALG K + Y +L + + + G
Sbjct: 125 RSS--RVTIQLSTKQ--QSITFNVLPAFNALGL---SEKSSLWTYRELKRSLDMVKARPG 177
Query: 699 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGN-KLPPQYALELLTVYAWEQ 875
EFS CFTELQ F N P+KLK LI LVKHW+Q C++ N L P YALELLTVYAWEQ
Sbjct: 178 EFSVCFTELQEKFFSNYPSKLKDLILLVKHWFQKCQEKLINPSLLPPYALELLTVYAWEQ 237
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G G DF A+G +TVL L+ K ++LC++W Y+F + + L
Sbjct: 238 GCGAEDFDMAEGVRTVLRLIEKQEQLCVYWTVNYNFGDETVRNIL 282
>ref|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus].
Length = 352
Score = 161 bits (407), Expect = 1e-39
Identities = 101/291 (34%), Positives = 164/291 (56%), Gaps = 12/291 (4%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPV--RXXXXXXXXX 335
DTP L+ F+ ++ V +A+ V +FLK++ F+G H + +
Sbjct: 9 DTPASRLNSFVAQCQHNIKEWKEDVVKAVQSVEKFLKKQRFRGD-HGLDQKVLKVIRVGS 67
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LR ++ +LV+FL+ +SF+++ + + L C++ F +Q
Sbjct: 68 FGNGTVLRNHAEVELVMFLSGFSSFQEEASNHNHH-EHVLSML--CEKLTDFPDLLHLQP 124
Query: 516 PRRENPR-------ALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQE 674
+N R A++F + + +++++V ++PA+ L P ++P+PE+YV+LI+
Sbjct: 125 ---QNLRLVHGVTSAVAFTIQTWEMEEQVSVTIVPAYGVLRPSVPNFQPSPEVYVRLIKA 181
Query: 675 CKSRGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY--QTCKKTHGNKLPPQYALE 848
C++ G FS F+ELQR+F++ +PTKLKSL+RLVKHWY K +LPP YALE
Sbjct: 182 CRTLGY---FSPSFSELQRNFVKYKPTKLKSLLRLVKHWYLEYVKAKCPRAELPPMYALE 238
Query: 849 LLTVYAWEQGS-GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVI 998
LLT+YAWE G+ K F +G TVL L+ K+++LCI+W YY +NPVI
Sbjct: 239 LLTIYAWETGTEEKERFRLDKGLVTVLLLLTKYQRLCIYWTKYYTLQNPVI 289
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,122,546
Number of extensions: 1008069
Number of successful extensions: 3717
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3699
Number of HSP's successfully gapped: 6
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus... 403 e-112
Alignment gi|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus... 281 7e-76
Alignment gi|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus... 267 1e-71
Alignment gi|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 207 1e-53
>ref|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus familiaris].
Length = 355
Score = 403 bits (1035), Expect = e-112
Identities = 195/283 (68%), Positives = 231/283 (81%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
DTP +DLD+FIE++LLP+T FR QVKEAI I+ FLKERCFQG AHPVR
Sbjct: 6 DTPAKDLDRFIENYLLPDTQFRRQVKEAIHIISTFLKERCFQGAAHPVRVSKVVKGGSSG 65
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFL L SF++QL+ R +FI EI+RQLEACQRE+ F+V FEVQS +
Sbjct: 66 KGTTLRGRSDADLVVFLNNLKSFQEQLEKRGQFIWEIKRQLEACQREETFEVYFEVQSLQ 125
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
E PRALSFVL SPQL + VEFDVLPAFD LGQWT ++PNPE+Y++LIQEC++RG EGE
Sbjct: 126 WEKPRALSFVLKSPQLGEGVEFDVLPAFDVLGQWTNNHRPNPEVYIKLIQECENRGTEGE 185
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FSTCFTELQRDFLR RPTK+KSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWE+G+
Sbjct: 186 FSTCFTELQRDFLRQRPTKVKSLIRLVKHWYQKCKQKLGKPLPPQYALELLTVYAWERGN 245
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+T+F TAQGFQTVL+LVL +++LCI W YY+F+ P+I +YL
Sbjct: 246 HQTEFITAQGFQTVLKLVLNYQQLCIHWTKYYNFETPIIKQYL 288
>ref|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus familiaris].
Length = 1087
Score = 281 bits (719), Expect = 7e-76
Identities = 151/286 (52%), Positives = 190/286 (66%), Gaps = 3/286 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP DLDKFI D L PN F QV +A+D +C FLKE CFQ +A ++
Sbjct: 750 TPAGDLDKFISDFLQPNRQFLAQVNKAVDTICSFLKENCFQNSA--IKVLKVVKGGSLAK 807
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ++ + +V FE+ P+R
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFAEQGNRRAEIISEIRAQLEACQQKMQLEVKFEI--PKR 865
Query: 525 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
EN R LSF L S L Q V+FDVLPAF+ALGQ Y+P ++YV LI S GE
Sbjct: 866 ENSRVLSFSLKSQTMLDQSVDFDVLPAFNALGQVVSSYRPPSQVYVDLIY---SYNNAGE 922
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
+STCFTELQRDF+ +RPTKLKSLIRLVKHWY+ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYRQCNKMPRGRGSLPPQHGLELLTVYAWEQ 982
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYLT 1013
G F+ AQGF+TVLELV ++++L ++W YD ++ + +L+
Sbjct: 983 GGQSAQFNMAQGFRTVLELVSQYRQLRVYWTVNYDNEDQTVRDFLS 1028
Score = 214 bits (545), Expect = 1e-55
Identities = 120/285 (42%), Positives = 172/285 (60%), Gaps = 6/285 (2%)
Frame = +3
Query: 174 RDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXXTT 353
+DLD+FI+DHL PN F+ QV +AI+++ L+E+C + + T
Sbjct: 414 KDLDRFIQDHLKPNPQFQKQVGKAINVILGCLREKCVYKASRVSKGGSFGRG------TD 467
Query: 354 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRENP 533
LRG DA+LV+FL + DQ R E +QE++ QLE+ ++ ++ E P + P
Sbjct: 468 LRGGCDAELVIFLNCFEDYRDQRARRPEILQEMQAQLESWWQDPVPGLSLEF--PEQTVP 525
Query: 534 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEFSTC 713
AL F L S L+ ++ ++PAFDA+GQ G KP P++Y L+Q S + GE + C
Sbjct: 526 EALQFRLVSTALESWMDVCLVPAFDAVGQLCAGAKPAPQVYSTLLQ---SGCQGGEHAAC 582
Query: 714 FTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKTHGNK-----LPPQYALELLTVYAWEQ 875
F EL+R+F+ RP KLKSLI LVKHWY Q + G + LPP YALELLT++AWEQ
Sbjct: 583 FAELRRNFVNVRPAKLKSLILLVKHWYRQVAAQNKGQQPACASLPPVYALELLTIFAWEQ 642
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G G+ F AQG +TVLELV +H++LC++W Y F++P I +L
Sbjct: 643 GCGEDSFKMAQGLKTVLELVQQHQQLCVYWTVNYSFEDPAIRTHL 687
Score = 188 bits (477), Expect = 8e-48
Identities = 108/285 (37%), Positives = 162/285 (56%), Gaps = 2/285 (0%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP L + L P+ F+ A+ + L+ER + A P R
Sbjct: 6 TPAAALASLVARRLQPSAEFQRAAWRALGALATTLRERGDRAAAQPWRVLKTAKGGSAGR 65
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T LRG D+++V+FL S++D R E ++++ L++ ++ + FE +
Sbjct: 66 GTALRGGCDSEIVIFLDCFKSYKDHSVDRAEILKDLWDLLQSWWQKPIPGLNFETLW--Q 123
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEF 704
+ P L F L+S L+ ++ ++PAFDALGQ G KP P++Y L+ S + GE
Sbjct: 124 DRPGVLQFRLASTDLENWMDVSLVPAFDALGQLCAGAKPAPQVYSTLLH---SGCQGGEH 180
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKTHGNK-LPPQYALELLTVYAWEQG 878
+ CF EL+R+F+ RP KLKSLI LVKHWY Q C++ + LPP YALELLT++AWEQG
Sbjct: 181 AACFAELRRNFVNVRPAKLKSLILLVKHWYRQVCQEEAKREMLPPAYALELLTIFAWEQG 240
Query: 879 SGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYLT 1013
GK FS AQG +TVL L+ ++++LC+FW Y F+NP + +L+
Sbjct: 241 CGKDAFSLAQGLRTVLGLIQEYRQLCVFWTLNYGFENPTVRSFLS 285
>ref|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus familiaris].
Length = 685
Score = 267 bits (682), Expect = 1e-71
Identities = 144/285 (50%), Positives = 187/285 (65%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKFI+D L PN F Q+ A+D +C+FL++ CFQ +A V+
Sbjct: 342 TPGHLLDKFIKDFLQPNKNFLGQIAVAVDFICKFLQKNCFQHSATKVQKTVKGGSTGKG- 400
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ SDADLVVF L S+ Q R I+EI +QL ACQ+E++F V FE+ +
Sbjct: 401 -TALKTGSDADLVVFPDSLKSYTSQKNERCRIIKEIHKQLVACQQEKEFAVKFEIS--KW 457
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEG-E 701
+ PR LSF L S L + V FDVLPAF+ LGQ G P+P+IY +LI KS EG E
Sbjct: 458 KAPRVLSFSLKSKVLNESVNFDVLPAFNVLGQVNSGSPPSPKIYTELINLYKSSNAEGGE 517
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FSTCFTELQ F+ +RPTK+K LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 518 FSTCFTELQCSFVASRPTKVKDLIRLVKHWYKQCERKLKKKGSLPPKYALELLTIYAWEQ 577
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GSG +F TA+GF+TVLELV K+++LC+FW Y+F + + +L
Sbjct: 578 GSGAENFDTAEGFRTVLELVTKYQQLCVFWTVNYNFDDETVRNFL 622
Score = 177 bits (449), Expect = 1e-44
Identities = 108/279 (38%), Positives = 156/279 (55%), Gaps = 2/279 (0%)
Frame = +3
Query: 180 LDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXXTTLR 359
LD+ I++ L P + Q+ +A+D +C L+E T T LR
Sbjct: 16 LDELIQNSLRPYGECQKQIDDAVDTICAALQE-----TEQIPTVLSVVQGGSYGRKTVLR 70
Query: 360 GRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRA 539
G SD +V+F++ L F+DQ + +++ + +I + L+ACQ K EVQ R
Sbjct: 71 GNSDGMIVIFVSDLEQFQDQKRSQDKILNKIWQLLKACQLAMKLPAKMEVQRFRD----G 126
Query: 540 LSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECK-SRGKEGEFSTCF 716
L F LS+ Q + F VLPA++ALG KP+ +IY +L + ++ GEFS CF
Sbjct: 127 LIFQLSTKW--QSITFKVLPAYNALGL---SEKPSSQIYRELKRALDMTKAHPGEFSICF 181
Query: 717 TELQRDFLRNRPTKLKSLIRLVKHWYQTCK-KTHGNKLPPQYALELLTVYAWEQGSGKTD 893
TELQ+ F P KLK LI LVK+WYQ C+ K G+ L YALELLTVYAWEQG G +
Sbjct: 182 TELQQKFFHKYPRKLKDLILLVKYWYQQCQEKLKGSPLLTMYALELLTVYAWEQGCGAEN 241
Query: 894 FSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
F A+G +TVL L+ + ++LC++W Y+F+N + L
Sbjct: 242 FDIAEGIRTVLGLIRQQEQLCVYWIVNYNFENETVRNIL 280
>ref|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus
familiaris].
Length = 519
Score = 207 bits (528), Expect = 1e-53
Identities = 114/285 (40%), Positives = 167/285 (58%), Gaps = 6/285 (2%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTA---HPVRXXXXXXXX 332
+TP L F+E L P ++ +VK+A + RF +++CF+ VR
Sbjct: 9 ETPAERLLAFVERSLQPEGDWKEEVKDAWQRIERFFRDQCFRDELVLDQEVRVLKVVKGG 68
Query: 333 XXXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQ 512
TTL SD DLV+FL+ +SF+DQ R I I+++L + + +T Q
Sbjct: 69 SSGKGTTLNYSSDVDLVLFLSCFSSFQDQAAHRRSIISFIKKRLIQHSKNLAYSITIVPQ 128
Query: 513 SPRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGK 692
PR+LSF + + + + + DVLPA+DALG ++ +KP+PEIY LI S G
Sbjct: 129 KETTRVPRSLSFQVQARKTSEVIGVDVLPAYDALGHFSSDFKPSPEIYEDLI---TSGGP 185
Query: 693 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTC--KKTHGNKLPPQYALELLTVYA 866
GEFS FTELQR F+++ P KLK+L+R+VKHWY C K LPP+YA ELLT+YA
Sbjct: 186 PGEFSPSFTELQRHFVKSCPVKLKNLLRMVKHWYLQCLKPKYRNAALPPKYAFELLTIYA 245
Query: 867 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVI 998
WE G+ K+D F+ +GF+ V+EL+L ++ +C +W YYDF+N +
Sbjct: 246 WEIGTDKSDNFNLDEGFRAVMELLLDYEDICRYWTKYYDFQNETV 290
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,823,171
Number of extensions: 1042343
Number of successful extensions: 3686
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3648
Number of HSP's successfully gapped: 7
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo... 416 e-116
Alignment gi|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo... 416 e-116
Alignment gi|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [H... 416 e-116
Alignment gi|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens]. 292 3e-79
Alignment gi|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo... 266 2e-71
Alignment gi|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo... 266 2e-71
Alignment gi|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 176 3e-44
Alignment gi|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 119 4e-27
Alignment gi|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [H... 56 6e-08
>ref|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens].
Length = 400
Score = 416 bits (1068), Expect = e-116
Identities = 205/283 (72%), Positives = 235/283 (83%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
+TP + LDKFIED+LLP+TCFRMQ+ AIDI+C FLKERCF+G+++PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQRE+ F V FEVQ+PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
KT F+TAQGF+TVLELV+ +++LCI+W YYDFKNP+I +YL
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYL 287
>ref|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo sapiens].
Length = 364
Score = 416 bits (1068), Expect = e-116
Identities = 205/283 (72%), Positives = 235/283 (83%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
+TP + LDKFIED+LLP+TCFRMQ+ AIDI+C FLKERCF+G+++PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQRE+ F V FEVQ+PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
KT F+TAQGF+TVLELV+ +++LCI+W YYDFKNP+I +YL
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYL 287
>ref|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [Homo sapiens].
Length = 414
Score = 416 bits (1068), Expect = e-116
Identities = 205/283 (72%), Positives = 235/283 (83%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
+TP + LDKFIED+LLP+TCFRMQ+ AIDI+C FLKERCF+G+++PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQRE+ F V FEVQ+PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
KT F+TAQGF+TVLELV+ +++LCI+W YYDFKNP+I +YL
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYL 287
>ref|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens].
Length = 1087
Score = 292 bits (748), Expect = 3e-79
Identities = 155/285 (54%), Positives = 195/285 (68%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP DLDKFI + L PN F QV +A+D +C FLKE CF+ + P++
Sbjct: 750 TPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNS--PIKVIKVVKGGSSAK 807
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ+E++F+V FEV +
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVS--KW 865
Query: 525 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
ENPR LSF L+S L Q V+FDVLPAFDALGQ G +P+ ++YV LI S GE
Sbjct: 866 ENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIH---SYSNAGE 922
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
+STCFTELQRDF+ +RPTKLKSLIRLVKHWYQ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQ 982
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G + F+ A+GF+TVLELV ++++LCI+W Y+ K+ +G +L
Sbjct: 983 GGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFL 1027
Score = 218 bits (554), Expect = 9e-57
Identities = 119/287 (41%), Positives = 172/287 (59%), Gaps = 6/287 (2%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P ++LD+FI+DHL P+ F+ QVK+AIDI+ R L E C + +
Sbjct: 412 PTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVHKASRVSKGGSFGRG------ 465
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRE 527
T LR D +L++FL T ++DQ R E + E+R QLE+ ++Q + +Q P +
Sbjct: 466 TDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQV--PSLSLQFPEQN 523
Query: 528 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEFS 707
P AL F L S L+ + +LPAFDA+GQ + G KPNP++Y +L+ S +EGE
Sbjct: 524 VPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLT---SGCQEGEHK 580
Query: 708 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK------LPPQYALELLTVYAW 869
CF EL+R+F+ RP KLK+LI LVKHWY+ + K LPP YALELLT++AW
Sbjct: 581 ACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAW 640
Query: 870 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
EQG + F+ AQGF+TVL LV +H++LC++W Y ++P + +L
Sbjct: 641 EQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHL 687
Score = 191 bits (485), Expect = 9e-49
Identities = 112/286 (39%), Positives = 163/286 (56%), Gaps = 4/286 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LD+F+ L P F + + A+ + L+ER + A R
Sbjct: 6 TPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGR 65
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQK--FKVTFEVQSP 518
T L+G D++LV+FL S+ DQ R E + E+R LE+ + ++TF P
Sbjct: 66 GTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTF----P 121
Query: 519 RRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEG 698
+ P AL F L+S L+ ++ ++PAF+ LGQ G KP P++Y L+ S + G
Sbjct: 122 EQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLN---SGCQGG 178
Query: 699 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKTHGNK-LPPQYALELLTVYAWE 872
E + CFTEL+R+F+ RP KLK+LI LVKHWY Q C + + LPP YALELLT++AWE
Sbjct: 179 EHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAWE 238
Query: 873 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
QG K FS A+G +TVL L+ +H+ LC+FW Y F++P +G++L
Sbjct: 239 QGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFL 284
>ref|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens].
Length = 719
Score = 266 bits (681), Expect = 2e-71
Identities = 141/285 (49%), Positives = 189/285 (66%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ SDADLVVF L S+ Q R + ++EI QL+A RE++ ++ + P+
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKW 459
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRG-KEGE 701
+ PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS GE
Sbjct: 460 KAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGE 519
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 520 FSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGSLPPKYALELLTIYAWEQ 579
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GSG DF TA+GF+TVLELV ++++LCIFWK Y+F++ + ++L
Sbjct: 580 GSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFL 624
Score = 164 bits (415), Expect = 1e-40
Identities = 106/288 (36%), Positives = 151/288 (52%), Gaps = 7/288 (2%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKER----CFQGTAHPVRXXXXXXXXX 335
P + L FI+++L P + + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 516 PRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQEC-KSRGK 692
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 693 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGN--KLPPQYALELLTVYA 866
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 867 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
WEQG K +F A+G +TVLEL+ +KLCI+W Y+F++ I L
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNIL 280
>ref|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo sapiens].
Length = 687
Score = 266 bits (681), Expect = 2e-71
Identities = 141/285 (49%), Positives = 189/285 (66%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ SDADLVVF L S+ Q R + ++EI QL+A RE++ ++ + P+
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFEPPKW 459
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRG-KEGE 701
+ PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS GE
Sbjct: 460 KAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPGGE 519
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 520 FSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGSLPPKYALELLTIYAWEQ 579
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GSG DF TA+GF+TVLELV ++++LCIFWK Y+F++ + ++L
Sbjct: 580 GSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFL 624
Score = 164 bits (415), Expect = 1e-40
Identities = 106/288 (36%), Positives = 151/288 (52%), Gaps = 7/288 (2%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKER----CFQGTAHPVRXXXXXXXXX 335
P + L FI+++L P + + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 516 PRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQEC-KSRGK 692
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 693 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGN--KLPPQYALELLTVYA 866
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 867 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
WEQG K +F A+G +TVLEL+ +KLCI+W Y+F++ I L
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNIL 280
>ref|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform a [Homo
sapiens].
Length = 514
Score = 176 bits (446), Expect = 3e-44
Identities = 102/284 (35%), Positives = 157/284 (55%), Gaps = 6/284 (2%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTA---HPVRXXXXXXXXX 335
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 516 PRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKE 695
+ P AL F + + + + ++PA+ ALG P +P PE+YV LI+ C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 696 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAW 869
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ K + LPP YALELLT+YAW
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRANLPPLYALELLTIYAW 244
Query: 870 EQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVI 998
E G+ + + F +GF TV++L+L+++ +CI+W YY N +I
Sbjct: 245 EMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAII 288
>ref|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform b [Homo
sapiens].
Length = 255
Score = 119 bits (298), Expect = 4e-27
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 3/227 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTA---HPVRXXXXXXXXX 335
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 516 PRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKE 695
+ P AL F + + + + ++PA+ ALG P +P PE+YV LI+ C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 696 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQ 836
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ + PQ
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQAHHPGSGRPHPQ 231
>ref|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [Homo sapiens].
Length = 172
Score = 55.8 bits (133), Expect = 6e-08
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKER----CFQGTAHPVRXXXXXXXXX 335
P + L FI+++L P + + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 336 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQS 515
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 516 PRRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ--WTPGYK 638
F + Q + F+VL AF+AL + W G K
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSKHCWVSGEK 159
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,043,351
Number of extensions: 1018892
Number of successful extensions: 3678
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3623
Number of HSP's successfully gapped: 13
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculu... 362 e-100
Alignment gi|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus]. 359 2e-99
Alignment gi|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus]. 311 5e-85
Alignment gi|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus]. 284 7e-77
Alignment gi|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus muscul... 282 3e-76
Alignment gi|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculu... 278 6e-75
Alignment gi|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculu... 274 9e-74
Alignment gi|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus]. 272 3e-73
Alignment gi|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculu... 272 3e-73
Alignment gi|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [M... 259 2e-69
>ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculus].
Length = 367
Score = 362 bits (928), Expect = e-100
Identities = 181/281 (64%), Positives = 212/281 (75%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG AHPVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRE 527
TTL+GRSDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQS
Sbjct: 69 TTLKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 528 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEFS 707
N R+LSF LS+P L QEVEFDVLPAFD LG + KPNP IY LI EC S GK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFS 188
Query: 708 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSGK 887
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGC 248
Query: 888 TDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+F+TAQGF+TVLELV+ ++ L I+W YYDF++ + +YL
Sbjct: 249 NEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHKEVSKYL 289
>ref|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus].
Length = 367
Score = 359 bits (921), Expect = 2e-99
Identities = 178/281 (63%), Positives = 212/281 (75%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG AHPVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRE 527
TTL+G+SDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQS
Sbjct: 69 TTLKGKSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 528 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEFS 707
N R+LSF LS+P L QEVEFDVLPAFD LG KP+P IY LI+EC S GK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHVNTSSKPDPRIYAILIEECTSLGKDGEFS 188
Query: 708 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSGK 887
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTV+AWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVFAWEQGNGC 248
Query: 888 TDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+F+TAQGF+TVLELV+ ++ L I+W YYDF++ + +YL
Sbjct: 249 YEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHQEVSKYL 289
>ref|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus].
Length = 364
Score = 311 bits (797), Expect = 5e-85
Identities = 161/287 (56%), Positives = 196/287 (68%), Gaps = 5/287 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP +LDKFI DHLLP++ F + + +D + FLKERCFQG HPVR
Sbjct: 8 TPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDE 67
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ +S+A +VVFL LTSFE+QL+ R EFI+EIR+ L Q E+ FKV FEVQS
Sbjct: 68 HTALKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEE 127
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDAL-----GQWTPGYKPNPEIYVQLIQECKSRG 689
N R+LSF LSSP+LQQEVEFDV PA+D L ++ Y N +IY QLI EC +
Sbjct: 128 PNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNKYAELYLYN-KIYAQLIHECTTLK 186
Query: 690 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAW 869
KEGEFS CFT+L + FL +R KLK+LIRLVKHWYQ CK+ G LPPQYALELLTVYAW
Sbjct: 187 KEGEFSICFTDLHQSFLEDRAPKLKNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAW 246
Query: 870 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
E GS +F+TAQGF+TVLELV K+K L I+W YYDF+ + YL
Sbjct: 247 ESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTVYYDFRKTKVSEYL 293
>ref|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus].
Length = 1138
Score = 284 bits (727), Expect = 7e-77
Identities = 150/285 (52%), Positives = 188/285 (65%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
T DLDKFI + L PN F QVK A+D +C FLKE CF+ + ++
Sbjct: 801 TLAEDLDKFISEFLQPNRHFLTQVKRAVDTICSFLKENCFRNST--IKVLKVVKGGSSAK 858
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+GRSDADLVVFL+ F +Q R E I EI+ LEACQ+ F V FEV +R
Sbjct: 859 GTALQGRSDADLVVFLSCFRQFSEQGSHRAEIISEIQAHLEACQQMHSFDVKFEVS--KR 916
Query: 525 ENPRALSFVLSSPQL-QQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGE 701
+NPR LSF L+S L Q V+FDVLPAFDALGQ G +P+P +Y LI C + G E
Sbjct: 917 KNPRVLSFTLTSQTLLDQSVDFDVLPAFDALGQLRSGSRPDPRVYTDLIHSCSNAG---E 973
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FSTCFTELQRDF+ +RPTKLKSLIRLVK+WYQ C KT K LPPQ+ LELLTVYAWEQ
Sbjct: 974 FSTCFTELQRDFITSRPTKLKSLIRLVKYWYQQCNKTIKGKGSLPPQHGLELLTVYAWEQ 1033
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G F+ A+GF+TVLEL++++++LC++W Y ++ IG +L
Sbjct: 1034 GGQNPQFNMAEGFRTVLELIVQYRQLCVYWTINYSAEDKTIGDFL 1078
Score = 189 bits (481), Expect = 2e-48
Identities = 109/288 (37%), Positives = 158/288 (54%), Gaps = 7/288 (2%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P +DLD FI+DHL P+ F+ QVK+AID + L+E+ +
Sbjct: 464 PSKDLDCFIQDHLRPSPQFQQQVKQAIDAILCCLREKSVY------KVLRVSKGGSFGRG 517
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEA-CQREQKFKVTFEVQSPRR 524
T LRG D +LV+F L F+ Q + E +++++ QL CQ ++
Sbjct: 518 TDLRGSCDVELVIFYKTLGDFKGQKPHQAEILRDMQAQLRHWCQNPVPGLSLQFIE---- 573
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEF 704
+ P AL L+S L V+ VLPAFDA+G G KP P++Y L+ S + GE
Sbjct: 574 QKPNALQLQLASTDLSNRVDLSVLPAFDAVGPLKSGTKPQPQVYSSLLS---SGCQAGEH 630
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTH------GNKLPPQYALELLTVYA 866
+ CF EL+R+F+ P KLKSL+ LVKHWY+ + G+ PP YALELLT++A
Sbjct: 631 AACFAELRRNFINTCPPKLKSLMLLVKHWYRQVVTRYKGGEAAGDAPPPAYALELLTIFA 690
Query: 867 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
WEQG G+ FS A+G +T+L L+ +H+ LCI+W Y ++P I +L
Sbjct: 691 WEQGCGEQKFSLAEGLRTILRLIQQHQSLCIYWTVNYSVQDPAIRAHL 738
Score = 187 bits (476), Expect = 9e-48
Identities = 112/283 (39%), Positives = 153/283 (54%), Gaps = 1/283 (0%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDK + +L P F V+ A+ + L++ +G+ P R
Sbjct: 6 TPAGALDKLVAHNLHPAPEFTAAVRGALGSLNITLQQHRARGSQRP-RVIRIAKGGAYAR 64
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T LRG +D +LV+FL SF DQ E + +R LE+ +TFE +
Sbjct: 65 GTALRGGTDVELVIFLDCFQSFGDQKTCHSETLGAMRMLLESWGGHPGPGLTFEFSQSKA 124
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEF 704
R L F L+S + ++ ++PAFD LGQ G KP P +Y L+ S + GE+
Sbjct: 125 S--RILQFRLASADGEHWIDVSLVPAFDVLGQPRSGVKPTPNVYSSLLS---SHCQAGEY 179
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKTHGNKLPPQYALELLTVYAWEQGS 881
S CFTE +++F+ RP KLK+LI LVKHWY Q + LPP YALELLT++AWEQG
Sbjct: 180 SACFTEPRKNFVNTRPAKLKNLILLVKHWYHQVQTRAVRATLPPSYALELLTIFAWEQGC 239
Query: 882 GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GK FS AQG +TVL L+ K LCIFW Y F++P +G +L
Sbjct: 240 GKDSFSLAQGLRTVLALIQHSKYLCIFWTENYGFEDPAVGEFL 282
>ref|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus musculus].
Length = 376
Score = 282 bits (721), Expect = 3e-76
Identities = 153/281 (54%), Positives = 186/281 (66%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P LDKFIE+HL P+T F ++E ID +C LK+R F+G +R
Sbjct: 9 PASKLDKFIENHL-PDTSFCADLREVIDALCALLKDRSFRGPVRRMRASKGVKGKG---- 63
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRE 527
TTL+GRSDADLVVFL LTSFEDQL + I+EI++QL Q E++ V FEV S R
Sbjct: 64 TTLKGRSDADLVVFLNNLTSFEDQLNQQGVLIKEIKKQLCEVQHERRCGVKFEVHSLRSP 123
Query: 528 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEFS 707
N RALSF LS+P L +EV+FDVLPA+D L KPN + Y LI GKEG+ S
Sbjct: 124 NSRALSFKLSAPDLLKEVKFDVLPAYDLLDHLNILKKPNQQFYANLISGRTPPGKEGKLS 183
Query: 708 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSGK 887
CF L++ FL RPTKLK LIRLV HWYQ CK+ G+ LPPQYALELLTVYAWE GS
Sbjct: 184 ICFMGLRKYFLNCRPTKLKRLIRLVTHWYQLCKEKLGDPLPPQYALELLTVYAWEYGSRV 243
Query: 888 TDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
T F+TAQGF+TVLELV K+K+L I+W YYDF++ + YL
Sbjct: 244 TKFNTAQGFRTVLELVTKYKQLRIYWTVYYDFRHQEVSEYL 284
>ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculus].
Length = 362
Score = 278 bits (710), Expect = 6e-75
Identities = 144/284 (50%), Positives = 189/284 (66%), Gaps = 5/284 (1%)
Frame = +3
Query: 174 RDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXXTT 353
R+LD+FI D+L P+T F +++ ID + FLKERCFQG AHPVR T
Sbjct: 11 RELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTA 70
Query: 354 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRENP 533
L+G+S+A +V+F LTSFE+QL+ R EF++EI++ L Q+E+ FKV FEVQS N
Sbjct: 71 LKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNS 130
Query: 534 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE----IYVQLIQECKSRGKEGE 701
R+LSF LSSP+LQQEVEFDV PA+D L + P+ +Y QLI EC + KEG+
Sbjct: 131 RSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGD 190
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS 881
FS CFT+L ++F+R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY WE +
Sbjct: 191 FSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSN 250
Query: 882 -GKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+ +TA+ F+T LELV +K L I+W YYDF++ + YL
Sbjct: 251 KNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYL 294
>ref|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculus].
Length = 356
Score = 274 bits (700), Expect = 9e-74
Identities = 151/289 (52%), Positives = 187/289 (64%), Gaps = 7/289 (2%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP+ LD FIED LLP+T F +++ ID + FLKERCFQG HP+R
Sbjct: 8 TPIWRLDNFIEDQLLPDTTFLTELRADIDSISAFLKERCFQGATHPMRVARVVMGGSYDE 67
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
L+GRS+A++VVF LTSFEDQL+ ++ FI+EIR+ L Q+E+ K+ FEVQS
Sbjct: 68 HNALKGRSEANMVVFFNDLTSFEDQLKWQQVFIEEIRKHLLQLQQEKPCKLKFEVQSSEE 127
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE------IYVQLIQECKSR 686
N R+L+F L SP+ QQEVEFDV PA+DAL + GY + E +Y QLI EC +
Sbjct: 128 PNTRSLTFKLCSPERQQEVEFDVQPAYDAL--YEGGYCKSFESINYNKVYAQLIHECTTL 185
Query: 687 GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYA 866
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY
Sbjct: 186 EKEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYV 245
Query: 867 WEQG-SGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
WE G AQ F+TVLELV K+K L I+W +YDF+ P I YL
Sbjct: 246 WEFGVQDSFGLHAAQCFRTVLELVTKYKCLLIYWTWFYDFR-PEISDYL 293
>ref|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus].
Length = 742
Score = 272 bits (696), Expect = 3e-73
Identities = 143/285 (50%), Positives = 192/285 (67%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP L+KFI+D L PN F Q+KEA+DI+C FLK CF + +
Sbjct: 382 TPSHLLNKFIKDFLQPNKLFLKQIKEAVDIICSFLKNVCFLNS--DTKVLKTVKGGSTAK 439
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+ SDAD+VVFL+ L S++ R +F+QEI++QLE + Q+++VTFE+ +
Sbjct: 440 GTALKRGSDADIVVFLSSLESYDSLKTNRSQFVQEIQKQLEEFVQAQEWEVTFEIS--KW 497
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRG-KEGE 701
+ PR LSF L S L + VEFDVLPA+DALGQ + PE Y LI+ C S+ KEGE
Sbjct: 498 KAPRVLSFTLKSKTLNESVEFDVLPAYDALGQLRSDFTLRPEAYKDLIELCASQDIKEGE 557
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FS CFTELQR+F++ RPTKLKSL+RL+KHWY+ ++ K LPP+YALELLTVYAWEQ
Sbjct: 558 FSICFTELQRNFIQTRPTKLKSLLRLIKHWYKQYERKMKPKASLPPKYALELLTVYAWEQ 617
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GSG DF A+GF+TVL+LV+K+++LCIFW Y+F+ + ++L
Sbjct: 618 GSGTDDFDIAEGFRTVLDLVIKYRQLCIFWTVNYNFEEEYMRKFL 662
Score = 143 bits (361), Expect = 2e-34
Identities = 97/285 (34%), Positives = 146/285 (51%), Gaps = 4/285 (1%)
Frame = +3
Query: 168 PVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXXX 347
P + L+ +I+++L PN Q+ +A+D + L+ + PV+
Sbjct: 61 PSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQI------PVKEVAKGGSYGRE-- 112
Query: 348 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRRE 527
T LRG SD LV+F+ F+DQ++ ++ ++ I L+ E +S + E
Sbjct: 113 TALRGCSDGTLVLFMDCFQQFQDQIKYQDAYLDVIELWLKI----------HEKKSVKHE 162
Query: 528 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKS-RGKEGEF 704
+ AL +S P Q + +LP F+ L P+ +YV L + R GEF
Sbjct: 163 H--ALVVQVSVPG--QRILLQLLPVFNPLRS---NENPSSCVYVDLKKSMDQVRASPGEF 215
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQ---YALELLTVYAWEQ 875
S CFT LQ+ F + P +LK LI LVKHWY+ C++ PPQ YALELLTVYAWEQ
Sbjct: 216 SDCFTTLQQRFFKKYPQRLKDLILLVKHWYEQCQEKWKTP-PPQPLLYALELLTVYAWEQ 274
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G DF AQG +TVL L+ + +LC++W Y+F++ + L
Sbjct: 275 GCQAEDFDMAQGVRTVLRLIQRPTELCVYWTVNYNFEDETVRNIL 319
>ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculus].
Length = 361
Score = 272 bits (695), Expect = 3e-73
Identities = 149/283 (52%), Positives = 185/283 (65%), Gaps = 6/283 (2%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP+ LDKFIED LLP+T F +++ ID + FL ERCFQG AHPVR
Sbjct: 8 TPIWRLDKFIEDQLLPDTTFLTELRADIDSISAFLMERCFQGAAHPVRVSRVVMGGCYNE 67
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+GRS+A++VVFL LTSFEDQ + FI+EI R L Q+E+ K+ FEVQSP+
Sbjct: 68 YTVLKGRSEANMVVFLINLTSFEDQFNGQVVFIEEIWRHLLQLQQEKLCKLKFEVQSPKE 127
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKP-----NPEIYVQLIQECKSRG 689
N R LSF LS P+ Q E+EFDV PA+DAL + +KP ++Y QL EC +
Sbjct: 128 PNSRFLSFKLSCPERQHELEFDVQPAYDALYE-VRHFKPFDSSNYNKVYAQLTHECTTLE 186
Query: 690 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAW 869
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY W
Sbjct: 187 KEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYVW 246
Query: 870 EQGSGKT-DFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPV 995
E G + TAQ F+TVLELV K+K+L I+W YDF++ +
Sbjct: 247 EYGIHENPGLHTAQCFRTVLELVTKYKRLRIYWTWCYDFQHEI 289
>ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus].
Length = 369
Score = 259 bits (663), Expect = 2e-69
Identities = 140/287 (48%), Positives = 186/287 (64%), Gaps = 5/287 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKFIE HLL + F +++ ++ + FLKERCFQG AHP+R
Sbjct: 15 TPAWRLDKFIEGHLLGDITFLTELRTDVNSISAFLKERCFQGAAHPMRVSRVVMGGSYNR 74
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T L+GRS+ DL+VF LT F+DQ +L++E I+EI++ L Q+E++ + F+VQS +
Sbjct: 75 YTVLKGRSEVDLLVFFNNLTCFDDQFKLQKEVIEEIQKHLCQFQQEKRLREKFKVQSSDQ 134
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI----YVQLIQECKSRGK 692
N R++SF LS P+ QQEVEF + A+DAL + N EI Y +LI+EC GK
Sbjct: 135 PNFRSVSFKLSYPKFQQEVEFHMQTAYDALYEVRRKENHNCEIYNKVYARLIRECTMLGK 194
Query: 693 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWE 872
EGEF+ CF ELQ+DFL RP +LK+LI LVKHWYQ CK+ LPPQYALELLTVYAWE
Sbjct: 195 EGEFNICFMELQQDFLWKRPCELKNLICLVKHWYQLCKEKLREPLPPQYALELLTVYAWE 254
Query: 873 -QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
+ K + TA+GF+TVLEL+ K+ L I+W YYD + + YL
Sbjct: 255 HELPDKHETQTARGFRTVLELITKYLCLRIYWTLYYDVLHEQVNAYL 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,243,917
Number of extensions: 850821
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2936
Number of HSP's successfully gapped: 16
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa]. 519 e-148
Alignment gi|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa]. 270 7e-73
Alignment gi|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 156 2e-38
>ref|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa].
Length = 349
Score = 519 bits (1337), Expect = e-148
Identities = 254/280 (90%), Positives = 259/280 (92%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP RDLDKFIEDHLLPNTCFR QVKEAIDIVCRFLKERCFQGTA PVR
Sbjct: 6 TPARDLDKFIEDHLLPNTCFRTQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGK 65
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
TTLRGRSDADLVVFLTKLTSFEDQL+ R EFIQEIRRQLEACQREQKFKVTFEVQSPRR
Sbjct: 66 GTTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRR 125
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEGEF 704
ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLI+ECKSRGKEGEF
Sbjct: 126 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEF 185
Query: 705 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSG 884
STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGS
Sbjct: 186 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSR 245
Query: 885 KTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGR 1004
KTDFSTAQGFQTVLELVLKH+KLCIFW+ YYDF NPV+GR
Sbjct: 246 KTDFSTAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGR 285
>ref|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa].
Length = 707
Score = 270 bits (691), Expect = 7e-73
Identities = 146/285 (51%), Positives = 189/285 (66%), Gaps = 3/285 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LDKFI+D L P+ F Q K+A+DI+C+FLKE CF+ +A V+
Sbjct: 341 TPSHHLDKFIKDFLQPDKTFLDQTKKAVDIICKFLKENCFRHSATKVQKIVKGGSTAKG- 399
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPRR 524
T SDADLVVF L S+ Q R I+EI +QLEACQ+ Q F+VTFE+ +
Sbjct: 400 --TALKNSDADLVVFTDLLKSYTSQKNERCTIIKEIHKQLEACQQAQDFEVTFEIS--KW 455
Query: 525 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRG-KEGE 701
+ PR LSF L S L + V FDVLPAF+ALG G P+P+IY +LI KS GE
Sbjct: 456 KAPRVLSFSLKSKVLNECVHFDVLPAFNALGDLKSGSAPSPKIYAELISLYKSSDILGGE 515
Query: 702 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNK--LPPQYALELLTVYAWEQ 875
FSTCFT+LQRDF+R++PTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAWE+
Sbjct: 516 FSTCFTKLQRDFVRSQPTKLKDLIRLVKHWYKWCERKLKQKGSLPPKYALELLTIYAWEK 575
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
GSG F TA+GF+TVL+L+ +++ LCIFW Y+F N ++ +L
Sbjct: 576 GSGVLSFDTAEGFRTVLKLITEYQHLCIFWTVNYNFDNEIVRNFL 620
Score = 180 bits (456), Expect = 1e-45
Identities = 104/285 (36%), Positives = 150/285 (52%), Gaps = 2/285 (0%)
Frame = +3
Query: 162 DTPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXX 341
D P + L +F++++L P+ + Q+ + +D +C+ L Q
Sbjct: 10 DRPPQKLGEFVQNNLRPSEDCQKQIDQTVDTICKVL-----QDAEQLPLVISVARGGSYG 64
Query: 342 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKFKVTFEVQSPR 521
T LRG SD LV+F++ L F+DQ + E + +I QL+ CQ +K + E+Q+
Sbjct: 65 RKTVLRGNSDGSLVIFISDLEKFQDQSKNHSELLSQIWAQLKCCQLTRKLEAKMEIQN-F 123
Query: 522 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKS-RGKEG 698
P + +Q + F +LPAF+ALG KP+P Y L + + G
Sbjct: 124 NSGPTTIQLFAK----EQSITFKILPAFNALGL---SEKPSPWTYRDLKRSLDMMKASPG 176
Query: 699 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLP-PQYALELLTVYAWEQ 875
EFS CFTELQ F N P KLK LI LVK+WYQ C++ P YALELLTVYAWEQ
Sbjct: 177 EFSVCFTELQERFFNNLPRKLKDLILLVKYWYQQCQEKLAVSFQLPVYALELLTVYAWEQ 236
Query: 876 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVIGRYL 1010
G G DF A+G +TVL L+ K +LC++W Y+F++ + L
Sbjct: 237 GCGAEDFDIAEGLRTVLGLIRKPGELCVYWTVNYNFEDETVRNVL 281
>ref|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa].
Length = 348
Score = 156 bits (394), Expect = 2e-38
Identities = 102/283 (36%), Positives = 154/283 (54%), Gaps = 5/283 (1%)
Frame = +3
Query: 165 TPVRDLDKFIEDHLLPNTCFRMQVKEAIDIVCRFLKERCFQGTAHPVRXXXXXXXXXXXX 344
TP LD F+ L P+ + +V EA+ V +FL ++CF G +
Sbjct: 6 TPASKLDTFVAKCLHPHKECKEEVLEAVRTVKKFLWQQCFPG-----KNVQVLEVGSFGN 60
Query: 345 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQREQKF--KVTFEVQSP 518
T LR ++ +LV FL SF + L + + ++ + L +CQ F K + V+
Sbjct: 61 GTVLRDSTEVELVAFLCCFRSFRETEDL-DNMLDQLSKTLCSCQGLLAFDLKDVWLVE-- 117
Query: 519 RRENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIQECKSRGKEG 698
E RA++F + + L+ + F ++PA+ L P P+ E+YV LI+ +R G
Sbjct: 118 --EVFRAIAFTIWTKNLEGPITFTIMPAYRDL---VPHGGPSAEVYVDLIE---ARKPPG 169
Query: 699 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHG--NKLPPQYALELLTVYAWE 872
FS F +LQR F+++RP KLKSL+RLVKHWY K +LPP YALELLT+YAWE
Sbjct: 170 NFSPSFAKLQRSFVKHRPAKLKSLLRLVKHWYLKYVKARCPIARLPPLYALELLTIYAWE 229
Query: 873 QGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWKTYYDFKNPVI 998
G+ + F +G TV+ L+ +++ LCI+W YY F+NP+I
Sbjct: 230 VGTKAHERFHLDRGLVTVMCLLQEYQSLCIYWTNYYKFQNPII 272
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,934,779
Number of extensions: 649193
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2336
Number of HSP's successfully gapped: 4
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-002859
(1013 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 559 e-156
>Sscrofa_Chr14
|| Length = 153851969
Score = 559 bits (282), Expect = e-156
Identities = 294/298 (98%)
Strand = Plus / Plus
Query: 325 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41258545 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41258604
Query: 385 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 444
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41258605 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41258664
Query: 445 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41258665 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41258724
Query: 505 aggtccagagtccacgacgggagaacccccgtgccctcagcttcgtgctcagctcccccc 564
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41258725 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41258784
Query: 565 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41258785 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41258842
Score = 559 bits (282), Expect = e-156
Identities = 294/298 (98%)
Strand = Plus / Plus
Query: 325 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41261746 agggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtcg 41261805
Query: 385 tcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaagaattcatcc 444
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 41261806 tcttcctcaccaagctcacaagttttgaggatcagcttcggctccgaggagaattcatcc 41261865
Query: 445 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41261866 aggaaattcggagacagctggaagcctgtcaaagagaacaaaagtttaaagtgacgtttg 41261925
Query: 505 aggtccagagtccacgacgggagaacccccgtgccctcagcttcgtgctcagctcccccc 564
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 41261926 aggtccagagtccacgacgggagaacccccgtgctctcagcttcgtgctcagctcccccc 41261985
Query: 565 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtcagtg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41261986 agctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtgagtg 41262043
Score = 424 bits (214), Expect = e-116
Identities = 214/214 (100%)
Strand = Plus / Plus
Query: 800 gtgtaagaagactcatggaaataaactgcccccacagtatgccctggagctcctgacagt 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265364 gtgtaagaagactcatggaaataaactgcccccacagtatgccctggagctcctgacagt 41265423
Query: 860 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265424 ctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttcagac 41265483
Query: 920 tgttttggaattagtcctaaagcataagaagctttgcatcttctggaaaacatattatga 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41265484 tgttttggaattagtcctaaagcataagaagctttgcatcttctggaaaacatattatga 41265543
Query: 980 ctttaaaaaccctgtcattggacgatatctgact 1013
||||||||||||||||||||||||||||||||||
Sbjct: 41265544 ctttaaaaaccctgtcattggacgatatctgact 41265577
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 615 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatccaagag 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263089 ggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatccaagag 41263148
Query: 675 tgcaagtcccgagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263149 tgcaagtcccgagggaaagagggcgagttttccacctgcttcacggagctgcagcgagac 41263208
Query: 735 ttcctgaggaaccgacctaccaagctgaagagcctcatccgccttgtcaagcactggtac 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41263209 ttcctgaggaaccgacctaccaagctgaagagcctcatccgccttgtcaagcactggtac 41263268
Query: 795 cagacg 800
||||||
Sbjct: 41263269 cagacg 41263274
Score = 295 bits (149), Expect = 2e-77
Identities = 161/165 (97%)
Strand = Plus / Plus
Query: 163 atacccctgttagggacctagacaagttcatcgaagaccacctcctgccaaacacatgtt 222
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 41260734 atacccctgctagggacctagacaagttcatcgaagaccacctcctgccaaacacgtgtt 41260793
Query: 223 tccgaatgcaggtcaaggaagccatcgacatcgtctgcagattcctgaaggagaggtgct 282
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 41260794 tccgaacgcaggtcaaggaagccatcgacatcgtctgcagtttcctgaaggagaggtgct 41260853
Query: 283 tccaggggaccgcccaccctgttcgcgtctccaaagttgtgaagg 327
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41260854 tccaggggaccgcccaccctgttcgcgtctccaaagttgtgaagg 41260898
Score = 240 bits (121), Expect = 1e-60
Identities = 139/145 (95%)
Strand = Plus / Plus
Query: 183 gacaagttcatcgaagaccacctcctgccaaacacatgtttccgaatgcaggtcaaggaa 242
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 41257553 gacaagttcatcgaagaccacctcctgccaaacacgtgtttccgaacgcaggtcaaggaa 41257612
Query: 243 gccatcgacatcgtctgcagattcctgaaggagaggtgcttccaggggaccgcccaccct 302
|||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||
Sbjct: 41257613 gccatcgacatcgtctgcggtttcctgaaggagaggtgcttctaggggaccgccgaccct 41257672
Query: 303 gttcgcgtctccaaagttgtgaagg 327
|||||||||||||||||||||||||
Sbjct: 41257673 gttcgcgtctccaaagttgtgaagg 41257697
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,456,070
Number of extensions: 160
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 6
Length of query: 1013
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 992
Effective length of database: 2,808,413,156
Effective search space: 2785945850752
Effective search space used: 2785945850752
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)